AlfalfaGEDB | MS.gene88853

M. sativa cultivar XinJiangDaYe / MS.gene88853

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88853.t1	XP_013469571.1	98.2	571	10	0	1	571	1	571	0.00E+00	1139.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88853.t1	Q9XIC5	42.8	593	268	17	4	567	1	551	2.8e-108	394.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88853.t1	A0A072VNK6	98.2	571	10	0	1	571	1	571	0.0e+00	1139.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene88853.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055150	MS.gene88853	0.816979	4.18E-52	-1.69E-46
MS.gene055886	MS.gene88853	0.804414	2.19E-49	-1.69E-46
MS.gene057148	MS.gene88853	-0.806338	8.63E-50	-1.69E-46
MS.gene057174	MS.gene88853	0.819287	1.26E-52	-1.69E-46
MS.gene060237	MS.gene88853	0.82409	9.74E-54	-1.69E-46
MS.gene060522	MS.gene88853	0.813823	2.11E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88853.t1	MTR_1g097300	98.249	571	10	0	1	571	1	571	0.0	1178
MS.gene88853.t1	MTR_1g097300	97.680	431	10	0	141	571	1	431	0.0	876
MS.gene88853.t1	MTR_3g096140	52.261	199	90	1	13	211	1	194	1.02e-69	226
MS.gene88853.t1	MTR_3g096140	52.261	199	90	1	13	211	1	194	9.94e-69	226
MS.gene88853.t1	MTR_8g063550	56.000	175	77	0	20	194	7	181	2.16e-67	222
MS.gene88853.t1	MTR_8g063550	56.000	175	77	0	20	194	7	181	4.74e-67	224
MS.gene88853.t1	MTR_8g063550	56.000	175	77	0	20	194	7	181	6.98e-67	224
MS.gene88853.t1	MTR_8g093580	54.857	175	79	0	20	194	7	181	3.16e-65	221
MS.gene88853.t1	MTR_6g477900	59.006	161	66	0	21	181	8	168	1.15e-60	201
MS.gene88853.t1	MTR_5g076850	61.728	162	61	1	21	181	8	169	1.29e-60	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88853.t1	AT1G34190	43.121	596	266	19	4	569	1	553	7.45e-139	414
MS.gene88853.t1	AT1G34180	41.356	590	286	19	6	567	3	560	3.03e-125	380
MS.gene88853.t1	AT1G34180	40.532	602	286	20	6	567	3	572	1.30e-121	370
MS.gene88853.t1	AT1G34180	47.354	378	161	10	6	370	3	355	4.63e-99	308
MS.gene88853.t1	AT1G34180	45.897	390	161	11	6	370	3	367	1.26e-95	300
MS.gene88853.t1	AT1G32870	37.655	563	285	16	21	567	12	524	6.19e-86	276
MS.gene88853.t1	AT1G32870	37.655	563	285	16	21	567	48	560	2.66e-85	276
MS.gene88853.t1	AT5G09330	41.791	335	173	8	21	339	8	336	1.19e-72	241
MS.gene88853.t1	AT5G09330	41.791	335	173	8	21	339	8	336	1.19e-72	241
MS.gene88853.t1	AT5G09330	41.791	335	173	8	21	339	8	336	1.19e-72	241

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Find 127 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAACATCTCTGCATCT+TGG	0.490156	1.1:+70062776	None:intergenic
AAATTGATGAAATCATTAAA+GGG	0.472368	1.1:-70063576	MS.gene88853:CDS
AACAAAGGCCCACAGAGCTG+AGG	0.632369	1.1:+70062142	None:intergenic
AACACCCGCAGTCCAGCTGA+AGG	0.628590	1.1:-70062604	MS.gene88853:CDS
AACATCTCTGCATCTTGGTA+AGG	0.509554	1.1:+70062781	None:intergenic
AAGGTAATACCTTAACATCA+CGG	0.661498	1.1:+70063912	None:intergenic
ACAGTTTGATTTGCGTCTTC+TGG	0.203030	1.1:+70062655	None:intergenic
ACATGTTGCTGGTCAAGGAC+AGG	0.530141	1.1:+70063538	None:intergenic
ACATTGTCAACAGCAGCCTC+TGG	0.508902	1.1:+70063637	None:intergenic
ACCATTTAAAGAAGAAGAAT+GGG	0.480249	1.1:-70063710	MS.gene88853:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAATACCTTAACATCA+CGG	+	chr1.1:70063205-70063224	None:intergenic	30.0%
ACAAAATGACAATCACCAAT+CGG	+	chr1.1:70062125-70062144	None:intergenic	30.0%
ACCAATCGGAAAAACATAAA+AGG	+	chr1.1:70062111-70062130	None:intergenic	30.0%
ATCTGAAAAGGAAGATTTGT+GGG	-	chr1.1:70061984-70062003	MS.gene88853:CDS	30.0%
CACATAAAGCAATAAGAATC+GGG	+	chr1.1:70065180-70065199	None:intergenic	30.0%
CACCATTTAAAGAAGAAGAA+TGG	-	chr1.1:70063403-70063422	MS.gene88853:intron	30.0%
GAGATCAAAACTACAAAAAC+AGG	+	chr1.1:70063761-70063780	None:intergenic	30.0%
GCACATAAAGCAATAAGAAT+CGG	+	chr1.1:70065181-70065200	None:intergenic	30.0%
TAATGTAAATTCAGTTGACC+GGG	-	chr1.1:70063449-70063468	MS.gene88853:intron	30.0%
TATCTGAAAAGGAAGATTTG+TGG	-	chr1.1:70061983-70062002	MS.gene88853:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	70061878	70065258	70061878	ID=MS.gene88853
chr1.1	mRNA	70061878	70065258	70061878	ID=MS.gene88853.t1;Parent=MS.gene88853
chr1.1	exon	70065063	70065258	70065063	ID=MS.gene88853.t1.exon1;Parent=MS.gene88853.t1
chr1.1	CDS	70065063	70065258	70065063	ID=cds.MS.gene88853.t1;Parent=MS.gene88853.t1
chr1.1	exon	70063922	70064199	70063922	ID=MS.gene88853.t1.exon2;Parent=MS.gene88853.t1
chr1.1	CDS	70063922	70064199	70063922	ID=cds.MS.gene88853.t1;Parent=MS.gene88853.t1
chr1.1	exon	70063513	70063803	70063513	ID=MS.gene88853.t1.exon3;Parent=MS.gene88853.t1
chr1.1	CDS	70063513	70063803	70063513	ID=cds.MS.gene88853.t1;Parent=MS.gene88853.t1
chr1.1	exon	70062572	70063148	70062572	ID=MS.gene88853.t1.exon4;Parent=MS.gene88853.t1
chr1.1	CDS	70062572	70063148	70062572	ID=cds.MS.gene88853.t1;Parent=MS.gene88853.t1
chr1.1	exon	70061878	70062251	70061878	ID=MS.gene88853.t1.exon5;Parent=MS.gene88853.t1
chr1.1	CDS	70061878	70062251	70061878	ID=cds.MS.gene88853.t1;Parent=MS.gene88853.t1

Gene Sequence

>MS.gene88853

ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCAGGTTTTCGCTTTCATCCAACAGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATCAAGGAAACTGATGTGTACAAGTGGGATCCTGAGGATTTACCTGGTATTTGATTTTGCTCTTCACTCTTATTTCAGTACCTTTTATGTTTTTCCGATTGGTGATTGTCATTTTGTTGACCTAGTTTTTTTTTGTTGGTTATGTTTATGATTTTTGGTTTTGTTTGTTGGTTATATTAATGTTTTTGGTTTTGTTTGTTGGTTATGTTCATGTTTTTGGTTTTGTTTAATGGTTATAAGGTGTTGATTTGGGTATGAATGTTTAGATCTCCTTGTTGTGAATATTATGTACAGTACTTAGCAATTCAGGATATGACCTATGCTTATTTGATATTTTGGATGTGTTTTTCAGGTTAGAGCCTCAAGAGTTGACTTCCATTTGTTTCGATAAGGTTTTTGTGTGTTATTTGGGTTCTTTTGTTTTGTCTATCTGAGTGATTCATGTTATGACTTATAATTGGTGTTTATTCGATGGGTGGTACCGCGAATCTGTTTGTACGAGTTTCTTTTTATTTTAGCTTTGACCTAGATGTAAGACTGATCACCAGTTCCCCTCCCCTTTGTGGGGTTCATTGACCCTGTCAGCTTTATCTATTTTTTGGGGTATGTTGAGATCTCTTGGTTGATATGGTCAGTGGATATTTTAGATGAATTGAAGTTTCCTTCAGTGCATGATAGGTCCGTAGATATTTTTGGTTCTCAAATTCGTGTCATGTGATGATCTGCTTGTATATGTTGGTAAATATGGTTAATTGCGATCTTTTGAATTTATTTCCTTAAAATAATGGGTTTTTGGAGTTCTAATGATCTATGCTATATGATTGTAGTATCGTTTCAATTTGATTGATAAAACTTACACTTCTTCATTTCTTTTGGTTTGATTGCTTACTTGCTTGTATTATTCTGCAGAACAATCTTTCCTGAAAACTGGAGACAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAACGGTGGAAGGTCTAGTCGAGCAACTAGACATGGCTACTGGAAAGCTACTGGAAAAGATCGAAATGTGATATACAATTCTCGGTCAGTTGGAGTGAAAAAGACACTTGTTTTCTATCTTGGCAGAGCTCCTAGTGGTGAGCGAACTGATTGGGTTATGCATGAGTACACCATGGATGAAGATGAGCTTAAGACATGCCGTGATGTTAAGGTATTACCTTCAACTGACTATTTTGATTTAAAATTATTGTTTCTGTTGGTTGTTTTGATTACTAAAATAGTATTATTTATTTACTGACTGTCAAATTTTGATATAAATTCATTATCAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGTTGACCGGGAGGTTCCAGAGGCTGCTGTTGACAATGTTATTGATCAGCATCAGCTGCAGCCGTTGTTTGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGACCAGCAACATGTGAATGGTTATGTTGACTTTCCTCAGGTGTGTGATCTGCCTGGAGTATTTTTTTTCTAAAATTCTTATAAATTTAGTTATGCCTTTATTCCTTTTTTGTTGTTGTGGGTAGGGGGAGGAACTTGAATCAGTACCATGTATGTAATCATCTGTTTTTATTTCCTGTTTTTGTAGTTTTGATCTCAATGTTCATAAATTGATACCCATTTGACAAAAAAAAAAAACTTTGCAGCTTTTTATAAGGGTTTTGGTCGTTGTAGTTTTTCTTGTTTAGTTAAAATATGTGAAAACCTGATCGTAGTATTGTTCTTCTCTCTTGTTTTCCTTCTATTGGTCTTCTCTCATATTTTCTAAATAACCGCTGACAGACATTTTTCCATGAATAATATAGGTTGCTGATGAAGAAACACGAAATATGGTCATGGATCAATTCTATGAGGCCATGATATTCCCTGATCCAAGTGAAAAACAGCAATCTAGCAGTCAGCTTTATGATGCGCAGCCCAGCTTTGACTTCAATCATCAATCAGTTGATTCTCACTTGTGTATTTCTGAAGCACCTGAGGTCACTTCCACTCCGAACATTCAAAGCGGGGAGGAGCTTGTCTTTTACGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGATACCGAATCTACATTTTCAAATACAGATAAGCTTAACAACGATCTCATTGAGAACCTCCAGTTTGAAGATGTGTTGAGTGAATTTGATCCTTACCAAGATGCAGAGATGTTTCTTTGTGGCCTGGGGTCTATTAACGAAGAAACAGTTTCACATGCATATATGAATAGCACTGGCAGCAATATTGAAAATCAGAGTTACCAGTTGTTGTCCAATCCAGAAGACGCAAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAACACCCGCAGTCCAGCTGAAGGTTATGATGGTTCTTTCTCTCTAACAAATCCAGGTATAGTCATTGGCACAAGCTACAATGTTGCTCAACTGGCAAATAATGATTTTACTTTCTTCGATTTGGATGGAGATTCAAGCTTCCCATCTCATTTCTGCTGAGCTCGTCACAGTTTACTGCTCCTGGTTGACACGCCAACTTGCGCGTGGCAGAAACCTTTATGGAGTTTAAATTTTGTGATGTTTAGAGAGCTTTAGAAATTAAAACTAAAACTTACGACATTATATTTCTGTTTTTGAGCCAATTTCAAGTGGCTCTTCTGCTTAGAAAATGTCATAGGCTATCCCTAATTTGTCATAGTTTTTGGTCATGTTTAGGTGTTGTGTGTGACTCTGTCGGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTAGAAGATGTTAAAACAAGTAGATTCTCCTCAGCTCTGTGGGCCTTTGTTGATTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATCCCTTGGTAAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCCACCGACAACAACATTGCTGCAGGTAATAATGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGGGTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGGTGCGTCTCCCCTTGA

Protein sequence

>MS.gene88853.t1

MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVIKETDVYKWDPEDLPEQSFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVIYNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEDELKTCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSVDREVPEAAVDNVIDQHQLQPLFDDEIDEIIKGMLDVEPVLDQQHVNGYVDFPQVADEETRNMVMDQFYEAMIFPDPSEKQQSSSQLYDAQPSFDFNHQSVDSHLCISEAPEVTSTPNIQSGEELVFYEEGFLEINDLIDTESTFSNTDKLNNDLIENLQFEDVLSEFDPYQDAEMFLCGLGSINEETVSHAYMNSTGSNIENQSYQLLSNPEDANQTVDEFWMHVERNTRSPAEGYDGSFSLTNPGVVCDSVGFPTESTENQRSTVEDVKTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKIKPTDNNIAAGNNDTATMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRCVSP