AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88938

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88938.t1 MTR_1g026410 98.711 543 6 1 1 542 1 543 0.0 1092
MS.gene88938.t1 MTR_3g115050 84.278 547 78 2 1 542 1 544 0.0 965
MS.gene88938.t1 MTR_4g075690 76.481 540 120 2 3 542 11 543 0.0 862
MS.gene88938.t1 MTR_4g049390 74.031 516 134 0 23 538 22 537 0.0 813
MS.gene88938.t1 MTR_4g048350 72.481 516 141 1 23 538 22 536 0.0 792
MS.gene88938.t1 MTR_2g088080 71.269 536 154 0 2 537 4 539 0.0 787
MS.gene88938.t1 MTR_4g132320 70.336 536 158 1 7 542 11 545 0.0 763
MS.gene88938.t1 MTR_4g075690 74.775 444 105 2 3 446 11 447 0.0 685
MS.gene88938.t1 MTR_2g088080 71.179 458 132 0 80 537 1 458 0.0 674
MS.gene88938.t1 MTR_8g479390 60.348 517 202 2 23 538 26 540 0.0 650
MS.gene88938.t1 MTR_5g018270 59.266 518 207 2 21 538 24 537 0.0 625
MS.gene88938.t1 MTR_8g479380 56.415 530 222 5 6 534 13 534 0.0 619
MS.gene88938.t1 MTR_4g083190 56.343 536 222 5 5 532 7 538 0.0 597
MS.gene88938.t1 MTR_3g083440 54.444 540 228 5 1 532 7 536 0.0 577
MS.gene88938.t1 MTR_3g083390 54.444 540 228 5 1 532 7 536 0.0 575
MS.gene88938.t1 MTR_3g083430 54.259 540 229 5 1 532 7 536 0.0 574
MS.gene88938.t1 MTR_3g083400 54.259 540 229 5 1 532 7 536 0.0 573
MS.gene88938.t1 MTR_3g083450 55.470 521 223 4 20 532 18 537 0.0 572
MS.gene88938.t1 MTR_4g083210 53.510 527 240 4 10 532 7 532 0.0 570
MS.gene88938.t1 MTR_3g083410 54.878 492 213 4 49 532 10 500 0.0 531
MS.gene88938.t1 MTR_4g101650 51.371 547 245 6 7 533 6 551 0.0 528
MS.gene88938.t1 MTR_3g008580 48.644 553 262 7 1 532 1 552 4.94e-176 509
MS.gene88938.t1 MTR_7g051440 51.985 529 228 10 25 532 26 549 1.12e-174 506
MS.gene88938.t1 MTR_1g090707 45.404 544 278 8 3 533 1 538 1.22e-156 460
MS.gene88938.t1 MTR_4g133150 58.173 208 68 2 132 337 21 211 7.00e-72 228
MS.gene88938.t1 MTR_5g020620 29.806 567 344 18 3 531 11 561 4.36e-59 206
MS.gene88938.t1 MTR_5g020600 28.345 568 352 16 6 531 12 566 2.71e-57 201
MS.gene88938.t1 MTR_3g462760 30.237 506 308 15 28 497 26 522 2.17e-54 192
MS.gene88938.t1 MTR_5g081810 27.561 537 340 12 33 531 4 529 1.51e-53 190
MS.gene88938.t1 MTR_5g069680 27.119 531 343 14 1 497 4 524 3.64e-51 184
MS.gene88938.t1 MTR_4g015120 27.639 521 345 12 22 511 18 537 4.80e-48 175
MS.gene88938.t1 MTR_8g091390 26.910 576 327 18 23 536 29 572 3.53e-47 173
MS.gene88938.t1 MTR_3g078740 25.894 587 335 20 28 537 26 589 7.33e-47 173
MS.gene88938.t1 MTR_3g078700 26.678 581 322 23 5 532 7 536 1.30e-44 166
MS.gene88938.t1 MTR_7g458880 26.117 582 364 17 1 531 14 580 1.38e-44 166
MS.gene88938.t1 MTR_8g027375 25.414 543 361 14 3 504 5 544 9.22e-41 155
MS.gene88938.t1 MTR_5g073210 26.132 574 358 16 7 531 4 560 9.24e-41 155
MS.gene88938.t1 MTR_7g058690 26.871 521 323 18 28 497 33 546 1.49e-40 155
MS.gene88938.t1 MTR_3g101640 27.675 542 327 17 6 497 11 537 2.81e-40 154
MS.gene88938.t1 MTR_3g071890 26.946 501 318 14 49 508 54 547 9.62e-40 152
MS.gene88938.t1 MTR_2g008330 26.376 527 338 14 49 531 59 579 1.65e-39 152
MS.gene88938.t1 MTR_7g065980 29.225 503 303 20 42 496 39 536 3.18e-39 151
MS.gene88938.t1 MTR_7g062310 25.720 521 328 15 28 497 47 559 1.53e-38 149
MS.gene88938.t1 MTR_5g083360 25.852 499 316 14 46 497 42 533 2.32e-38 148
MS.gene88938.t1 MTR_7g060460 26.095 548 338 18 8 497 9 547 2.61e-38 148
MS.gene88938.t1 MTR_7g062250 25.439 570 372 17 11 531 13 578 2.90e-38 148
MS.gene88938.t1 MTR_3g101635 28.189 486 311 14 49 497 48 532 2.95e-37 145
MS.gene88938.t1 MTR_4g064530 25.000 540 359 17 2 497 14 551 4.20e-36 142
MS.gene88938.t1 MTR_3g078730 25.342 584 334 21 5 537 7 539 4.52e-36 142
MS.gene88938.t1 MTR_7g065970 26.508 547 329 18 1 491 1 530 5.30e-36 142
MS.gene88938.t1 MTR_4g064530 25.000 536 354 18 2 491 14 547 7.28e-34 135
MS.gene88938.t1 MTR_4g019225 24.954 549 357 15 32 531 30 572 5.00e-29 121
MS.gene88938.t1 MTR_4g133160 53.211 109 37 2 413 521 1 95 2.90e-27 105
MS.gene88938.t1 MTR_5g018290 63.636 66 24 0 473 538 5 70 2.66e-24 96.7
MS.gene88938.t1 MTR_5g081790 26.538 260 158 7 256 489 168 420 9.51e-14 73.9
MS.gene88938.t1 MTR_5g081790 24.242 165 116 3 10 166 6 169 3.41e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88938.t1 AT1G76160 84.121 529 79 2 14 542 18 541 0.0 926
MS.gene88938.t1 AT1G41830 80.855 538 97 2 5 542 11 542 0.0 910
MS.gene88938.t1 AT1G21850 77.947 526 114 2 14 539 15 538 0.0 860
MS.gene88938.t1 AT1G21860 73.724 529 136 3 10 538 12 537 0.0 827
MS.gene88938.t1 AT4G22010 71.053 532 153 1 12 542 10 541 0.0 793
MS.gene88938.t1 AT4G38420 67.890 545 169 3 3 541 5 549 0.0 760
MS.gene88938.t1 AT4G28090 62.454 538 186 7 12 538 9 541 0.0 689
MS.gene88938.t1 AT5G66920 59.266 518 209 1 21 538 30 545 0.0 651
MS.gene88938.t1 AT4G38420 66.247 477 155 3 3 473 5 481 0.0 639
MS.gene88938.t1 AT1G55570 56.410 546 225 5 1 537 5 546 0.0 607
MS.gene88938.t1 AT4G38420 66.444 450 145 3 3 446 5 454 0.0 601
MS.gene88938.t1 AT3G13390 58.046 522 209 4 24 536 24 544 0.0 591
MS.gene88938.t1 AT3G13400 54.833 538 234 4 7 536 6 542 0.0 585
MS.gene88938.t1 AT3G13400 54.833 538 234 4 7 536 6 542 0.0 585
MS.gene88938.t1 AT1G55560 54.089 538 238 4 7 536 5 541 0.0 581
MS.gene88938.t1 AT4G37160 54.802 531 233 4 14 542 16 541 0.0 581
MS.gene88938.t1 AT2G23630 55.682 528 231 2 13 540 20 544 0.0 579
MS.gene88938.t1 AT2G23630 55.682 528 231 2 13 540 15 539 0.0 579
MS.gene88938.t1 AT5G48450 51.577 539 247 9 7 533 8 544 0.0 547
MS.gene88938.t1 AT5G48450 51.577 539 247 9 7 533 8 544 0.0 546
MS.gene88938.t1 AT4G12420 50.725 552 248 8 1 532 1 548 0.0 533
MS.gene88938.t1 AT4G12420 50.725 552 248 8 1 532 1 548 0.0 533
MS.gene88938.t1 AT5G51480 49.811 530 245 8 23 532 23 551 0.0 525
MS.gene88938.t1 AT1G75790 50.462 541 252 5 10 534 4 544 0.0 521
MS.gene88938.t1 AT4G25240 49.819 552 256 8 1 532 1 551 5.09e-178 514
MS.gene88938.t1 AT4G25240 49.819 552 256 8 1 532 1 551 5.09e-178 514
MS.gene88938.t1 AT4G37160 55.172 435 192 3 14 446 16 449 2.12e-167 482
MS.gene88938.t1 AT4G39830 27.698 556 336 14 2 504 13 555 6.06e-56 197
MS.gene88938.t1 AT5G21105 27.148 582 336 19 12 532 22 576 1.00e-53 192
MS.gene88938.t1 AT5G58910 28.785 535 328 16 7 497 8 533 4.06e-53 189
MS.gene88938.t1 AT2G38080 27.357 541 357 13 23 531 22 558 2.16e-52 187
MS.gene88938.t1 AT5G21105 27.829 539 306 18 12 489 22 538 1.81e-51 184
MS.gene88938.t1 AT5G58910 28.785 535 327 17 7 497 8 532 1.90e-51 185
MS.gene88938.t1 AT5G21100 27.143 560 323 19 32 532 28 561 3.68e-50 181
MS.gene88938.t1 AT5G03260 27.641 568 354 17 5 531 6 557 4.99e-50 181
MS.gene88938.t1 AT5G01190 27.746 519 335 12 28 511 25 538 7.11e-49 177
MS.gene88938.t1 AT5G01190 27.606 518 335 12 49 531 32 544 3.14e-47 173
MS.gene88938.t1 AT5G58910 29.472 492 288 16 49 497 14 489 7.35e-46 169
MS.gene88938.t1 AT4G39830 27.549 461 272 12 96 504 8 458 5.02e-40 152
MS.gene88938.t1 AT4G39830 27.549 461 272 12 96 504 10 460 5.61e-40 152
MS.gene88938.t1 AT2G30210 27.108 498 308 16 46 496 46 535 1.47e-39 152
MS.gene88938.t1 AT2G29130 26.335 543 343 17 2 496 5 538 1.51e-39 152
MS.gene88938.t1 AT2G46570 23.757 543 357 14 28 525 32 562 4.24e-39 150
MS.gene88938.t1 AT5G05390 27.054 499 313 14 42 497 41 531 8.64e-39 150
MS.gene88938.t1 AT3G09220 26.365 531 340 14 1 491 8 527 6.71e-38 147
MS.gene88938.t1 AT5G48100 26.800 500 318 16 49 505 43 537 1.13e-37 146
MS.gene88938.t1 AT1G18140 24.952 525 333 17 28 497 29 547 3.00e-36 142
MS.gene88938.t1 AT5G09360 26.136 528 344 16 7 496 15 534 3.24e-36 142
MS.gene88938.t1 AT5G01050 26.335 543 341 17 39 533 39 570 3.39e-36 142
MS.gene88938.t1 AT5G01040 27.435 503 300 17 39 491 39 526 3.85e-36 142
MS.gene88938.t1 AT4G39830 26.681 461 263 12 96 504 10 447 2.58e-35 138
MS.gene88938.t1 AT2G40370 23.850 587 384 15 1 531 1 580 8.58e-35 138
MS.gene88938.t1 AT5G21105 27.720 386 231 12 173 532 22 385 2.50e-34 134
MS.gene88938.t1 AT5G07130 24.955 553 333 18 14 504 10 542 7.94e-34 135
MS.gene88938.t1 AT2G46570 24.017 483 316 15 85 525 4 477 4.91e-30 123
MS.gene88938.t1 AT3G09220 25.814 430 278 11 101 491 3 430 3.56e-26 112
MS.gene88938.t1 AT5G60020 25.846 325 206 7 1 306 1 309 1.99e-25 110
MS.gene88938.t1 AT5G60020 25.846 325 206 7 1 306 1 309 2.01e-25 110
MS.gene88938.t1 AT5G60020 26.568 271 179 5 49 306 14 277 2.90e-24 107
MS.gene88938.t1 AT5G07130 24.790 476 276 18 91 504 2 457 3.96e-23 103
MS.gene88938.t1 AT5G07130 24.790 476 276 18 91 504 2 457 3.96e-23 103

Find 166 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGATGTCTTCATCATTT+TGG 0.141546 1.3:-103372 None:intergenic
GGAACTTGAGGTCAGAATTT+TGG 0.153063 1.3:+103648 MS.gene88938:CDS
CACAAAGCTGCTGGTGGTTT+TGG 0.164848 1.3:+102306 MS.gene88938:CDS
TGCTGTCAGGTTTGTCCTAA+TGG 0.243582 1.3:-103062 None:intergenic
AACTCTGCAGGTCCAGTTTC+AGG 0.260810 1.3:+102983 MS.gene88938:CDS
ATGTTACAGGAAAGACTTAC+AGG 0.284854 1.3:+102714 MS.gene88938:intron
GGCTACTCTTTCTTTGTTGT+TGG 0.288891 1.3:+103412 MS.gene88938:CDS
TTCTATTATTTCCCATCTCT+TGG 0.289041 1.3:+102279 MS.gene88938:CDS
AGTTCAGCTGGACAAGTTAA+TGG 0.296097 1.3:+103160 MS.gene88938:CDS
CCACAAAGTAATGCATTCTT+AGG 0.312465 1.3:-103749 None:intergenic
GACAATGGACAAGTGATAAA+AGG 0.313235 1.3:+103525 MS.gene88938:CDS
CGTATGAGTTCCTTCTTTGC+TGG 0.315087 1.3:-102170 None:intergenic
GGTGATTACACTGTCCTTAT+TGG 0.319377 1.3:+102384 MS.gene88938:CDS
GGTTCAAGGACCAATCAATT+TGG 0.323811 1.3:-103030 None:intergenic
AGTAATGCATTCTTAGGAAT+AGG 0.325123 1.3:-103743 None:intergenic
GGTCTATCAGAGATGCTTCC+AGG 0.328166 1.3:-103277 None:intergenic
TTACTTTGTGGTAGGGCAAC+TGG 0.340111 1.3:+103761 MS.gene88938:CDS
TCGAAGGGAACTGGAATTCT+TGG 0.348615 1.3:-102351 None:intergenic
CCGCAAGGATCATACCATTA+TGG 0.358471 1.3:+103103 MS.gene88938:CDS
GATCCTTGCGGGTTTGGTCT+TGG 0.363379 1.3:-103091 None:intergenic
GCTACTCTTTCTTTGTTGTT+GGG 0.364251 1.3:+103413 MS.gene88938:CDS
CCTAAGAATGCATTACTTTG+TGG 0.376644 1.3:+103749 MS.gene88938:CDS
CTTATCAATGGTCGTGGGTC+TGG 0.377274 1.3:+102559 MS.gene88938:CDS
AAGAAGTCAGCCAGCTTAAG+AGG 0.378912 1.3:-103232 None:intergenic
TCCACTTGGTGTTCGCCAAC+AGG 0.379493 1.3:+101170 MS.gene88938:CDS
GTCTTGGTCCACTTGCTGTC+AGG 0.380810 1.3:-103075 None:intergenic
CATAATGGTATGATCCTTGC+GGG 0.382551 1.3:-103102 None:intergenic
CTTCAGAGCTATCATCTTGA+TGG 0.384388 1.3:+103391 MS.gene88938:CDS
TGAACCAAGCCCGCTCCATT+AGG 0.386633 1.3:+103047 MS.gene88938:CDS
CTTCAAGTGAAAGATCAAAT+TGG 0.388160 1.3:+102252 MS.gene88938:CDS
TGGTATGATCCTTGCGGGTT+TGG 0.392790 1.3:-103097 None:intergenic
CAAAACCACCAGCAGCTTTG+TGG 0.393298 1.3:-102305 None:intergenic
ACACTGTCCTTATTGGTGAT+TGG 0.395975 1.3:+102391 MS.gene88938:CDS
TCATACGAAGATGGAGTGTT+TGG 0.398452 1.3:+102186 MS.gene88938:CDS
GTTGCTGTAGCGAAGAATTC+CGG 0.398646 1.3:-102963 None:intergenic
CTTGTTTCCGTTATCAAGTT+GGG 0.404501 1.3:-102515 None:intergenic
ACTTGTACCAATCACCAATA+AGG 0.411862 1.3:-102398 None:intergenic
ATGTATGTAAAGTTCTTTCC+AGG 0.413929 1.3:-102228 None:intergenic
ATCCATACAGGTTCTTCAAC+TGG 0.414214 1.3:+101124 MS.gene88938:CDS
GTAATGCATTCTTAGGAATA+GGG 0.417767 1.3:-103742 None:intergenic
ATTTGGATGGTGGGTCCACC+AGG 0.418556 1.3:-103013 None:intergenic
TTGTCCTAATGGAGCGGGCT+TGG 0.419822 1.3:-103051 None:intergenic
TTAAGTTTATCATGCCATAA+TGG 0.419861 1.3:-103117 None:intergenic
GAATGTCTGGTCCTGGGAAT+TGG 0.420914 1.3:-101333 None:intergenic
AATGGAGCGGGCTTGGTTCA+AGG 0.421159 1.3:-103044 None:intergenic
CCTGATGGAATTCTTATCAA+TGG 0.421680 1.3:+102547 MS.gene88938:CDS
GCGGGATCATCGAAGGGAAC+TGG 0.422110 1.3:-102360 None:intergenic
CTGGAATTCTTGGCCTACTT+AGG 0.428217 1.3:-102341 None:intergenic
TAGAATATCAAATGTGGGAT+TGG 0.430691 1.3:+102739 MS.gene88938:CDS
GCCAGCTTAAGAGGAGTATC+GGG 0.437831 1.3:-103223 None:intergenic
AAGTTCTTTCCAGGTGGAAT+GGG 0.445944 1.3:-102219 None:intergenic
GTTCAGCTGGACAAGTTAAT+GGG 0.447873 1.3:+103161 MS.gene88938:CDS
CAAGGGAGGAGTAGGTGGTT+TGG 0.449186 1.3:-102832 None:intergenic
AGCCAGCTTAAGAGGAGTAT+CGG 0.452171 1.3:-103224 None:intergenic
TAGATAGCAGTCCATGACTT+TGG 0.469788 1.3:-103599 None:intergenic
TATTATGTGACAGGATTTGA+AGG 0.472072 1.3:+102492 MS.gene88938:intron
TGGATGGTGGGTCCACCAGG+GGG 0.473394 1.3:-103010 None:intergenic
GACCCACCATCCAAATTGAT+TGG 0.477439 1.3:+103020 MS.gene88938:CDS
CAGTGAAATGGCACTGAACT+TGG 0.480159 1.3:+101044 None:intergenic
CTTGGATTCCACAAAGCTGC+TGG 0.481877 1.3:+102297 MS.gene88938:CDS
TTTGTCACAGAATGAATGTC+TGG 0.484656 1.3:-101346 None:intergenic
CAGGTTTGTCCTAATGGAGC+GGG 0.488484 1.3:-103056 None:intergenic
AAAGTTCTTTCCAGGTGGAA+TGG 0.489538 1.3:-102220 None:intergenic
GTGGTAGCTAAGTCATCAAA+GGG 0.489623 1.3:-103798 None:intergenic
TTGAAGGCCCAACTTGATAA+CGG 0.491854 1.3:+102508 MS.gene88938:CDS
CCCCGATACTCCTCTTAAGC+TGG 0.492307 1.3:+103222 MS.gene88938:CDS
CCATTGATAAGAATTCCATC+AGG 0.493362 1.3:-102547 None:intergenic
ACTTGTTTCCGTTATCAAGT+TGG 0.493576 1.3:-102516 None:intergenic
ATTCCGGTGGAGGTGAGTAC+AGG 0.496771 1.3:-102947 None:intergenic
CTCCTCCCTTGACGTTCACG+TGG 0.496861 1.3:+102844 MS.gene88938:CDS
ACAGAATGAATGTCTGGTCC+TGG 0.504301 1.3:-101340 None:intergenic
ATAGCAGGTGTTTACCGTCC+TGG 0.506103 1.3:+103259 MS.gene88938:CDS
ACTAACCATGAAATGAGAAA+AGG 0.507335 1.3:-101409 None:intergenic
GGAATGGAGTCCAGCAAAGA+AGG 0.507749 1.3:+102160 MS.gene88938:intron
TTCCAGTTGAAGAACCTGTA+TGG 0.507790 1.3:-101126 None:intergenic
GGGAGGAGTAGGTGGTTTGG+AGG 0.508210 1.3:-102829 None:intergenic
TATCAATGTCTTCAACAGCT+TGG 0.512023 1.3:+101381 MS.gene88938:CDS
GGAATTCTTATCAATGGTCG+TGG 0.513900 1.3:+102553 MS.gene88938:CDS
AGAATGCATTACTTTGTGGT+AGG 0.515449 1.3:+103753 MS.gene88938:CDS
CTGCGTCTCTAAGATTGTAC+TGG 0.516471 1.3:-103550 None:intergenic
TTGGATGGTGGGTCCACCAG+GGG 0.516542 1.3:-103011 None:intergenic
CAAGATGAAGCTGGTAGAAG+TGG 0.521035 1.3:+102793 MS.gene88938:CDS
AACAAGTTACCTTTCCCTGA+TGG 0.521178 1.3:+102532 MS.gene88938:CDS
GAGGAATTAGAATCCTAAGT+AGG 0.523452 1.3:+102328 MS.gene88938:CDS
GCTGACTTCTTCAAGATAGC+AGG 0.524240 1.3:+103244 MS.gene88938:CDS
TTCAACTGGAACGTTACCTA+TGG 0.528833 1.3:+101138 MS.gene88938:CDS
TTTGGATGGTGGGTCCACCA+GGG 0.529837 1.3:-103012 None:intergenic
TTGTTGCTGAAGATCCATAC+AGG 0.530698 1.3:+101112 MS.gene88938:CDS
GAATGCATTACTTTGTGGTA+GGG 0.534147 1.3:+103754 MS.gene88938:CDS
GGATTCCACAAAGCTGCTGG+TGG 0.534304 1.3:+102300 MS.gene88938:CDS
GGAGGAGTAGGTGGTTTGGA+GGG 0.534506 1.3:-102828 None:intergenic
ATCAATGGTCGTGGGTCTGG+AGG 0.535103 1.3:+102562 MS.gene88938:CDS
CTTATCAATGGCCAATTCCC+AGG 0.536067 1.3:+101322 MS.gene88938:CDS
CTTCGCTACAGCAACTCTGC+AGG 0.536476 1.3:+102971 MS.gene88938:CDS
ATGATTAGTTACCGTGTGGT+TGG 0.536620 1.3:-102421 None:intergenic
TTTGGGCACGACAATATCTC+GGG 0.539491 1.3:+103666 MS.gene88938:CDS
TATGGTGACATTTATCCACT+TGG 0.540771 1.3:+101156 MS.gene88938:CDS
CATCAAGATGATAGCTCTGA+AGG 0.545903 1.3:-103390 None:intergenic
TATGTTGCACTTGACAATGT+AGG 0.546497 1.3:+103620 MS.gene88938:CDS
TCTGATAGACCTAGTGGTGG+TGG 0.549192 1.3:+103289 MS.gene88938:CDS
AATCCTGTACTCACCTCCAC+CGG 0.553249 1.3:+102944 MS.gene88938:CDS
ATCACCAGCGGGATCATCGA+AGG 0.554567 1.3:-102367 None:intergenic
CAGGCTTAGAATATCAAATG+TGG 0.556229 1.3:+102733 MS.gene88938:CDS
ATTGTGCTATCAAGTTCAGC+TGG 0.557942 1.3:+103148 MS.gene88938:CDS
AGAAGGAACTCATACGAAGA+TGG 0.560891 1.3:+102177 MS.gene88938:CDS
GACCAATCAATTTGGATGGT+GGG 0.562075 1.3:-103022 None:intergenic
AGCAACAATAGTAGTAGTGA+TGG 0.562486 1.3:-101097 None:intergenic
ATGCAGGGAATACTTATCAA+TGG 0.562736 1.3:+101310 MS.gene88938:intron
CAGAATGAATGTCTGGTCCT+GGG 0.565547 1.3:-101339 None:intergenic
GCTTTGTGGAATCCAAGAGA+TGG 0.565601 1.3:-102291 None:intergenic
CAAGGACCAATCAATTTGGA+TGG 0.569010 1.3:-103026 None:intergenic
AGGACAAACCTGACAGCAAG+TGG 0.574032 1.3:+103067 MS.gene88938:CDS
GTGAACGTCAAGGGAGGAGT+AGG 0.576942 1.3:-102840 None:intergenic
CTAGTAACCGCGGATCAACC+TGG 0.581592 1.3:+102884 MS.gene88938:CDS
GGACCAATCAATTTGGATGG+TGG 0.582450 1.3:-103023 None:intergenic
CTCAGGTATATCCAAAGTCA+TGG 0.583355 1.3:+103588 MS.gene88938:CDS
GGTGGAGGTGAGTACAGGAT+TGG 0.585429 1.3:-102942 None:intergenic
GTAGCGAAGAATTCCGGTGG+AGG 0.585607 1.3:-102957 None:intergenic
ACAACATGTCCCATTCCACC+TGG 0.586121 1.3:+102210 MS.gene88938:CDS
CTTTGTGGAATCCAAGAGAT+GGG 0.586569 1.3:-102290 None:intergenic
ACCTGTTGGCGAACACCAAG+TGG 0.587332 1.3:-101171 None:intergenic
GTTCCCTTCGATGATCCCGC+TGG 0.588900 1.3:+102363 MS.gene88938:CDS
ATGTAGGAATGTGGAACTTG+AGG 0.589636 1.3:+103636 MS.gene88938:CDS
ACAGAATCACAAGATGAAGC+TGG 0.591529 1.3:+102784 MS.gene88938:CDS
AGGCTTAGAATATCAAATGT+GGG 0.595758 1.3:+102734 MS.gene88938:CDS
TTGACCCACGTGAACGTCAA+GGG 0.599164 1.3:-102849 None:intergenic
AATGTTGCATGCAGTCTGGA+TGG 0.603037 1.3:+103500 MS.gene88938:intron
ATAAGAATTCCATCAGGGAA+AGG 0.603702 1.3:-102541 None:intergenic
TCAGGTTTGTCCTAATGGAG+CGG 0.604135 1.3:-103057 None:intergenic
AAGTGGATAAATGTCACCAT+AGG 0.607359 1.3:-101154 None:intergenic
AGGACAGTGTAATCACCAGC+GGG 0.611484 1.3:-102378 None:intergenic
CCATAATGGTATGATCCTTG+CGG 0.613798 1.3:-103103 None:intergenic
TACAGGATTGGTAAATCGAG+AGG 0.614756 1.3:-102930 None:intergenic
AACGTCAAGGGAGGAGTAGG+TGG 0.614850 1.3:-102837 None:intergenic
TCATCTCTCAATGTGGAGCA+AGG 0.615730 1.3:+102586 MS.gene88938:CDS
AGATAAATACCACCACCACT+AGG 0.622790 1.3:-103298 None:intergenic
GCAGTCTGGATGGAGGACAA+TGG 0.623708 1.3:+103510 MS.gene88938:intron
ATTGACCCACGTGAACGTCA+AGG 0.633112 1.3:-102850 None:intergenic
TAGTAGTAGTGATGGCAAAG+AGG 0.634339 1.3:-101089 None:intergenic
ATGAAGCTGGTAGAAGTGGA+AGG 0.637021 1.3:+102797 MS.gene88938:CDS
TCCTCCCTTGACGTTCACGT+GGG 0.641683 1.3:+102845 MS.gene88938:CDS
ATCTCTGATAGACCTAGTGG+TGG 0.645124 1.3:+103286 MS.gene88938:CDS
TATGTAAAGTTCTTTCCAGG+TGG 0.645224 1.3:-102225 None:intergenic
GAATTCTTATCAATGGTCGT+GGG 0.645558 1.3:+102554 MS.gene88938:CDS
AGTTTCGCGTTCCACCACTC+AGG 0.647895 1.3:+103571 MS.gene88938:CDS
GGACCAAGACCAAACCCGCA+AGG 0.650703 1.3:+103088 MS.gene88938:CDS
TCACCAGCGGGATCATCGAA+GGG 0.652297 1.3:-102366 None:intergenic
CACTTGACAATGTAGGAATG+TGG 0.655047 1.3:+103627 MS.gene88938:CDS
CATTGATAAGAATTCCATCA+GGG 0.656365 1.3:-102546 None:intergenic
TATCAGAGATGCTTCCAGGA+CGG 0.660561 1.3:-103273 None:intergenic
GTCTTGACCAGGTTGATCCG+CGG 0.661746 1.3:-102891 None:intergenic
ACAATATAATAGTCTTGACC+AGG 0.663963 1.3:-102902 None:intergenic
TGGAGGATCATCTCTCAATG+TGG 0.668048 1.3:+102579 MS.gene88938:CDS
AGCATCTCTGATAGACCTAG+TGG 0.673066 1.3:+103283 MS.gene88938:CDS
TTGGTACAAGTCCAACCACA+CGG 0.685221 1.3:+102410 MS.gene88938:CDS
CCAGCTTAAGAGGAGTATCG+GGG 0.687155 1.3:-103222 None:intergenic
ACCCACGTGAACGTCAAGGG+AGG 0.690184 1.3:-102846 None:intergenic
GTTGCATGCAGTCTGGATGG+AGG 0.694195 1.3:+103503 MS.gene88938:intron
AAGGACAGTGTAATCACCAG+CGG 0.694966 1.3:-102379 None:intergenic
GCTGTAGCGAAGAATTCCGG+TGG 0.700350 1.3:-102960 None:intergenic
CTTTGGATATACCTGAGTGG+TGG 0.703031 1.3:-103582 None:intergenic
ATACTCAGTTCTAGTAACCG+CGG 0.703123 1.3:+102874 MS.gene88938:CDS
CAGCTTAAGAGGAGTATCGG+GGG 0.703277 1.3:-103221 None:intergenic
ATGGCATGATAAACTTAACG+AGG 0.737321 1.3:+103122 MS.gene88938:CDS
TGGTAGCTAAGTCATCAAAG+GGG 0.773118 1.3:-103797 None:intergenic
TGACTTTGGATATACCTGAG+TGG 0.778186 1.3:-103585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAACAAATTAAGTT+TGG - chr1.3:101279-101298 None:intergenic 15.0%
!!! CACTTTTATATTCATTTATA+TGG + chr1.3:101792-101811 MS.gene88938:intron 15.0%
!! AAAGCATGAATAAAGTAAAT+GGG - chr1.3:101957-101976 None:intergenic 20.0%
!! AATGAAAATGATCTATATGA+TGG - chr1.3:103452-103471 None:intergenic 20.0%
!! CACAATAATTTAAAAAGTAG+TGG - chr1.3:102055-102074 None:intergenic 20.0%
!! TATATTCATTTATATGGAGA+TGG + chr1.3:101798-101817 MS.gene88938:intron 20.0%
!! TCAATTCCAAATTAAGTAAT+TGG + chr1.3:101849-101868 MS.gene88938:intron 20.0%
!! TCATTTATTAATCAATTGCA+AGG - chr1.3:102112-102131 None:intergenic 20.0%
!! TGAAATATAAATATACCTGT+TGG - chr1.3:101188-101207 None:intergenic 20.0%
!!! TTGACACAACTAATATTTTT+TGG + chr1.3:102679-102698 MS.gene88938:intron 20.0%
! AAAATGATTCAGATCCAATA+AGG - chr1.3:101225-101244 None:intergenic 25.0%
! AAGCATGAATAAAGTAAATG+GGG - chr1.3:101956-101975 None:intergenic 25.0%
! ACGTGAAATAGTAGTATATT+AGG + chr1.3:102027-102046 MS.gene88938:intron 25.0%
! AGATAATTAGCTCAATTTGA+TGG - chr1.3:101999-102018 None:intergenic 25.0%
! ATTGTATTGTATTATGTGAC+AGG + chr1.3:102483-102502 MS.gene88938:intron 25.0%
! CAAAGCATGAATAAAGTAAA+TGG - chr1.3:101958-101977 None:intergenic 25.0%
! CAAATTTAGTACTAATGTTG+AGG - chr1.3:102662-102681 None:intergenic 25.0%
! CGTGAAATAGTAGTATATTA+GGG + chr1.3:102028-102047 MS.gene88938:intron 25.0%
! GACTCATATAATGTTTCATT+TGG + chr1.3:102632-102651 MS.gene88938:intron 25.0%
! GATGAAAAAAGAAATGTGAA+AGG - chr1.3:101440-101459 None:intergenic 25.0%
! TTAAGTTTATCATGCCATAA+TGG - chr1.3:103120-103139 None:intergenic 25.0%
!! TATAGTATGTGTGTTTTGTA+AGG - chr1.3:101703-101722 None:intergenic 25.0%
!! TGTTATTTACACATAGATAG+AGG - chr1.3:101471-101490 None:intergenic 25.0%
!!! CCTCAAAAGTCTTTTTAATT+GGG + chr1.3:101926-101945 MS.gene88938:intron 25.0%
!!! TATATGAGTCTTATTCATGT+AGG - chr1.3:102622-102641 None:intergenic 25.0%
ACATGACATAAAAACAGGAA+TGG + chr1.3:102144-102163 MS.gene88938:intron 30.0%
ACATGACATGACATAAAAAC+AGG + chr1.3:102139-102158 MS.gene88938:intron 30.0%
ACTAACCATGAAATGAGAAA+AGG - chr1.3:101412-101431 None:intergenic 30.0%
ACTACTATTTCACGTAATCA+AGG - chr1.3:102022-102041 None:intergenic 30.0%
AGGCTTAGAATATCAAATGT+GGG + chr1.3:102734-102753 MS.gene88938:CDS 30.0%
AGTAATGCATTCTTAGGAAT+AGG - chr1.3:103746-103765 None:intergenic 30.0%
ATATGAAGATATCAAACGTG+TGG - chr1.3:101573-101592 None:intergenic 30.0%
ATGTATGTAAAGTTCTTTCC+AGG - chr1.3:102231-102250 None:intergenic 30.0%
CATTGATAAGAATTCCATCA+GGG - chr1.3:102549-102568 None:intergenic 30.0%
CTTCAAGTGAAAGATCAAAT+TGG + chr1.3:102252-102271 MS.gene88938:CDS 30.0%
CTTTCATCCTTATACCTTAT+TGG + chr1.3:101208-101227 MS.gene88938:intron 30.0%
GTAATGCATTCTTAGGAATA+GGG - chr1.3:103745-103764 None:intergenic 30.0%
TAGAATATCAAATGTGGGAT+TGG + chr1.3:102739-102758 MS.gene88938:CDS 30.0%
TATTATGTGACAGGATTTGA+AGG + chr1.3:102492-102511 MS.gene88938:intron 30.0%
TTCAGATCCAATAAGGTATA+AGG - chr1.3:101218-101237 None:intergenic 30.0%
TTCTATTATTTCCCATCTCT+TGG + chr1.3:102279-102298 MS.gene88938:CDS 30.0%
! ACAATATAATAGTCTTGACC+AGG - chr1.3:102905-102924 None:intergenic 30.0%
! ACCTAGTACTACTACATTTT+GGG + chr1.3:101608-101627 MS.gene88938:intron 30.0%
! CCCAATTAAAAAGACTTTTG+AGG - chr1.3:101929-101948 None:intergenic 30.0%
! GCCTCAAAAGTCTTTTTAAT+TGG + chr1.3:101925-101944 MS.gene88938:intron 30.0%
! TACCTAGTACTACTACATTT+TGG + chr1.3:101607-101626 MS.gene88938:intron 30.0%
!! CAAAAGTCTTTTTAATTGGG+TGG + chr1.3:101929-101948 MS.gene88938:intron 30.0%
!!! ATTAAAAAGACTTTTGAGGC+AGG - chr1.3:101925-101944 None:intergenic 30.0%
!!! ATTTTGGGATGTTTGTTTGT+TGG + chr1.3:101623-101642 MS.gene88938:intron 30.0%
!!! TTTTGGGATGTTTGTTTGTT+GGG + chr1.3:101624-101643 MS.gene88938:intron 30.0%
AAGTGGATAAATGTCACCAT+AGG - chr1.3:101157-101176 None:intergenic 35.0%
ACTTGTACCAATCACCAATA+AGG - chr1.3:102401-102420 None:intergenic 35.0%
ACTTGTTTCCGTTATCAAGT+TGG - chr1.3:102519-102538 None:intergenic 35.0%
AGAATGCATTACTTTGTGGT+AGG + chr1.3:103753-103772 MS.gene88938:CDS 35.0%
AGCAACAATAGTAGTAGTGA+TGG - chr1.3:101100-101119 None:intergenic 35.0%
ATAAGAATTCCATCAGGGAA+AGG - chr1.3:102544-102563 None:intergenic 35.0%
ATGCAGGGAATACTTATCAA+TGG + chr1.3:101310-101329 MS.gene88938:intron 35.0%
ATGGCATGATAAACTTAACG+AGG + chr1.3:103122-103141 MS.gene88938:CDS 35.0%
ATGTTACAGGAAAGACTTAC+AGG + chr1.3:102714-102733 MS.gene88938:intron 35.0%
CAGGCTTAGAATATCAAATG+TGG + chr1.3:102733-102752 MS.gene88938:CDS 35.0%
CCACAAAGTAATGCATTCTT+AGG - chr1.3:103752-103771 None:intergenic 35.0%
CCATTGATAAGAATTCCATC+AGG - chr1.3:102550-102569 None:intergenic 35.0%
CCTAAGAATGCATTACTTTG+TGG + chr1.3:103749-103768 MS.gene88938:CDS 35.0%
CCTGATGGAATTCTTATCAA+TGG + chr1.3:102547-102566 MS.gene88938:CDS 35.0%
CTTGTTTCCGTTATCAAGTT+GGG - chr1.3:102518-102537 None:intergenic 35.0%
GAATGCATTACTTTGTGGTA+GGG + chr1.3:103754-103773 MS.gene88938:CDS 35.0%
GAATTCTTATCAATGGTCGT+GGG + chr1.3:102554-102573 MS.gene88938:CDS 35.0%
GACAATGGACAAGTGATAAA+AGG + chr1.3:103525-103544 MS.gene88938:CDS 35.0%
GAGGAATTAGAATCCTAAGT+AGG + chr1.3:102328-102347 MS.gene88938:CDS 35.0%
GCATGTTATGTTGTTAGAGT+TGG + chr1.3:101510-101529 MS.gene88938:intron 35.0%
TATCAATGTCTTCAACAGCT+TGG + chr1.3:101381-101400 MS.gene88938:CDS 35.0%
TATCTCTTGTAGTACTATGC+TGG + chr1.3:101729-101748 MS.gene88938:intron 35.0%
TATGGTGACATTTATCCACT+TGG + chr1.3:101156-101175 MS.gene88938:CDS 35.0%
TATGTAAAGTTCTTTCCAGG+TGG - chr1.3:102228-102247 None:intergenic 35.0%
TATGTTGCACTTGACAATGT+AGG + chr1.3:103620-103639 MS.gene88938:CDS 35.0%
TCCCAAAATGTAGTAGTACT+AGG - chr1.3:101612-101631 None:intergenic 35.0%
TCCTGTAACATCAATGACAA+GGG - chr1.3:102705-102724 None:intergenic 35.0%
TGCTGGCCAATTACTTAATT+TGG - chr1.3:101858-101877 None:intergenic 35.0%
TTCCTGTAACATCAATGACA+AGG - chr1.3:102706-102725 None:intergenic 35.0%
TTTACACATAGATAGAGGCT+AGG - chr1.3:101466-101485 None:intergenic 35.0%
TTTGTCACAGAATGAATGTC+TGG - chr1.3:101349-101368 None:intergenic 35.0%
! ACGAACCTTTTCTCATTTCA+TGG + chr1.3:101404-101423 MS.gene88938:CDS 35.0%
! ATGTTTTGTGACAAACATGC+AGG + chr1.3:101294-101313 MS.gene88938:intron 35.0%
! GAACTTGAGGTCAGAATTTT+GGG + chr1.3:103649-103668 MS.gene88938:CDS 35.0%
! GAAGGATGTCTTCATCATTT+TGG - chr1.3:103375-103394 None:intergenic 35.0%
! GTAAATGATTAGTTACCGTG+TGG - chr1.3:102428-102447 None:intergenic 35.0%
! TCAATTTGATGGTTAGCTAG+AGG - chr1.3:101988-102007 None:intergenic 35.0%
! TGTTTTGTGACAAACATGCA+GGG + chr1.3:101295-101314 MS.gene88938:intron 35.0%
!! GCTACTCTTTCTTTGTTGTT+GGG + chr1.3:103413-103432 MS.gene88938:CDS 35.0%
AAAAGTGAAGCTAGCAGATC+TGG - chr1.3:101779-101798 None:intergenic 40.0%
AAAGTGAAGCTAGCAGATCT+GGG - chr1.3:101778-101797 None:intergenic 40.0%
AAAGTTCTTTCCAGGTGGAA+TGG - chr1.3:102223-102242 None:intergenic 40.0%
AACAAGTTACCTTTCCCTGA+TGG + chr1.3:102532-102551 MS.gene88938:CDS 40.0%
AAGTTCTTTCCAGGTGGAAT+GGG - chr1.3:102222-102241 None:intergenic 40.0%
ACAGAATCACAAGATGAAGC+TGG + chr1.3:102784-102803 MS.gene88938:CDS 40.0%
ACCACTTGTATTGTGTTGTG+TGG + chr1.3:101651-101670 MS.gene88938:intron 40.0%
AGAAGGAACTCATACGAAGA+TGG + chr1.3:102177-102196 MS.gene88938:CDS 40.0%
AGATAAATACCACCACCACT+AGG - chr1.3:103301-103320 None:intergenic 40.0%
AGTTCAGCTGGACAAGTTAA+TGG + chr1.3:103160-103179 MS.gene88938:CDS 40.0%
ATCCATACAGGTTCTTCAAC+TGG + chr1.3:101124-101143 MS.gene88938:CDS 40.0%
ATGTAGGAATGTGGAACTTG+AGG + chr1.3:103636-103655 MS.gene88938:CDS 40.0%
ATTGTGCTATCAAGTTCAGC+TGG + chr1.3:103148-103167 MS.gene88938:CDS 40.0%
CAAGGACCAATCAATTTGGA+TGG - chr1.3:103029-103048 None:intergenic 40.0%
CACTTGACAATGTAGGAATG+TGG + chr1.3:103627-103646 MS.gene88938:CDS 40.0%
CATAATGGTATGATCCTTGC+GGG - chr1.3:103105-103124 None:intergenic 40.0%
CCATAATGGTATGATCCTTG+CGG - chr1.3:103106-103125 None:intergenic 40.0%
CTCAGGTATATCCAAAGTCA+TGG + chr1.3:103588-103607 MS.gene88938:CDS 40.0%
CTTCAGAGCTATCATCTTGA+TGG + chr1.3:103391-103410 MS.gene88938:CDS 40.0%
CTTTGTGGAATCCAAGAGAT+GGG - chr1.3:102293-102312 None:intergenic 40.0%
GACCAATCAATTTGGATGGT+GGG - chr1.3:103025-103044 None:intergenic 40.0%
GGAATTCTTATCAATGGTCG+TGG + chr1.3:102553-102572 MS.gene88938:CDS 40.0%
GGTGATTACACTGTCCTTAT+TGG + chr1.3:102384-102403 MS.gene88938:CDS 40.0%
GGTTCAAGGACCAATCAATT+TGG - chr1.3:103033-103052 None:intergenic 40.0%
GTTCAGCTGGACAAGTTAAT+GGG + chr1.3:103161-103180 MS.gene88938:CDS 40.0%
TAGATAGCAGTCCATGACTT+TGG - chr1.3:103602-103621 None:intergenic 40.0%
TAGTAGTAGTGATGGCAAAG+AGG - chr1.3:101092-101111 None:intergenic 40.0%
TATGAATGTTGCATGCAGTC+TGG + chr1.3:103496-103515 MS.gene88938:intron 40.0%
TGACTTTGGATATACCTGAG+TGG - chr1.3:103588-103607 None:intergenic 40.0%
TTCAACTGGAACGTTACCTA+TGG + chr1.3:101138-101157 MS.gene88938:CDS 40.0%
TTCCAGTTGAAGAACCTGTA+TGG - chr1.3:101129-101148 None:intergenic 40.0%
TTGAAGGCCCAACTTGATAA+CGG + chr1.3:102508-102527 MS.gene88938:CDS 40.0%
TTGTAGTACTATGCTGGTCA+TGG + chr1.3:101735-101754 MS.gene88938:intron 40.0%
TTGTTGCTGAAGATCCATAC+AGG + chr1.3:101112-101131 MS.gene88938:CDS 40.0%
! ACACTGTCCTTATTGGTGAT+TGG + chr1.3:102391-102410 MS.gene88938:CDS 40.0%
! ATACTCAGTTCTAGTAACCG+CGG + chr1.3:102874-102893 MS.gene88938:CDS 40.0%
! ATGATTAGTTACCGTGTGGT+TGG - chr1.3:102424-102443 None:intergenic 40.0%
! GGAACTTGAGGTCAGAATTT+TGG + chr1.3:103648-103667 MS.gene88938:CDS 40.0%
! GGCTACTCTTTCTTTGTTGT+TGG + chr1.3:103412-103431 MS.gene88938:CDS 40.0%
! TACAGGATTGGTAAATCGAG+AGG - chr1.3:102933-102952 None:intergenic 40.0%
! TCATACGAAGATGGAGTGTT+TGG + chr1.3:102186-102205 MS.gene88938:CDS 40.0%
! TGGCTAGCTAACTAACTAAC+AGG - chr1.3:101553-101572 None:intergenic 40.0%
! TTTTGGGCACGACAATATCT+CGG + chr1.3:103665-103684 MS.gene88938:CDS 40.0%
!! CATCAAGATGATAGCTCTGA+AGG - chr1.3:103393-103412 None:intergenic 40.0%
AAGAAGTCAGCCAGCTTAAG+AGG - chr1.3:103235-103254 None:intergenic 45.0%
AAGGACAGTGTAATCACCAG+CGG - chr1.3:102382-102401 None:intergenic 45.0%
AATGTTGCATGCAGTCTGGA+TGG + chr1.3:103500-103519 MS.gene88938:intron 45.0%
AATTGGCCAGCACTGCAATT+TGG + chr1.3:101866-101885 MS.gene88938:intron 45.0%
ACAGAATGAATGTCTGGTCC+TGG - chr1.3:101343-101362 None:intergenic 45.0%
AGAAAGCCAAATTGCAGTGC+TGG - chr1.3:101875-101894 None:intergenic 45.0%
AGCATCTCTGATAGACCTAG+TGG + chr1.3:103283-103302 MS.gene88938:CDS 45.0%
AGTACTATGCTGGTCATGGT+GGG + chr1.3:101739-101758 MS.gene88938:intron 45.0%
ATCTCTGATAGACCTAGTGG+TGG + chr1.3:103286-103305 MS.gene88938:CDS 45.0%
ATGAAGCTGGTAGAAGTGGA+AGG + chr1.3:102797-102816 MS.gene88938:CDS 45.0%
ATTGTGTTGTGTGGCTGCAA+AGG + chr1.3:101660-101679 MS.gene88938:intron 45.0%
CAAGATGAAGCTGGTAGAAG+TGG + chr1.3:102793-102812 MS.gene88938:CDS 45.0%
CACATAGATAGAGGCTAGGA+TGG - chr1.3:101462-101481 None:intergenic 45.0%
CAGAATGAATGTCTGGTCCT+GGG - chr1.3:101342-101361 None:intergenic 45.0%
CCGCAAGGATCATACCATTA+TGG + chr1.3:103103-103122 MS.gene88938:CDS 45.0%
CGTATGAGTTCCTTCTTTGC+TGG - chr1.3:102173-102192 None:intergenic 45.0%
CTGGAATTCTTGGCCTACTT+AGG - chr1.3:102344-102363 None:intergenic 45.0%
CTTATCAATGGCCAATTCCC+AGG + chr1.3:101322-101341 MS.gene88938:CDS 45.0%
CTTTGGATATACCTGAGTGG+TGG - chr1.3:103585-103604 None:intergenic 45.0%
GACCCACCATCCAAATTGAT+TGG + chr1.3:103020-103039 MS.gene88938:CDS 45.0%
GCCACACAACACAATACAAG+TGG - chr1.3:101655-101674 None:intergenic 45.0%
GCCCTTGTCATTGATGTTAC+AGG + chr1.3:102701-102720 MS.gene88938:intron 45.0%
GCTTTGTGGAATCCAAGAGA+TGG - chr1.3:102294-102313 None:intergenic 45.0%
GGACCAATCAATTTGGATGG+TGG - chr1.3:103026-103045 None:intergenic 45.0%
GTTGCTGTAGCGAAGAATTC+CGG - chr1.3:102966-102985 None:intergenic 45.0%
TAGTACTATGCTGGTCATGG+TGG + chr1.3:101738-101757 MS.gene88938:intron 45.0%
TATCAGAGATGCTTCCAGGA+CGG - chr1.3:103276-103295 None:intergenic 45.0%
TCAGGTTTGTCCTAATGGAG+CGG - chr1.3:103060-103079 None:intergenic 45.0%
TCATCTCTCAATGTGGAGCA+AGG + chr1.3:102586-102605 MS.gene88938:CDS 45.0%
TCGAAGGGAACTGGAATTCT+TGG - chr1.3:102354-102373 None:intergenic 45.0%
TGCTGTCAGGTTTGTCCTAA+TGG - chr1.3:103065-103084 None:intergenic 45.0%
TGGAGGATCATCTCTCAATG+TGG + chr1.3:102579-102598 MS.gene88938:CDS 45.0%
TTACTTTGTGGTAGGGCAAC+TGG + chr1.3:103761-103780 MS.gene88938:CDS 45.0%
TTGGTACAAGTCCAACCACA+CGG + chr1.3:102410-102429 MS.gene88938:CDS 45.0%
TTTGGGCACGACAATATCTC+GGG + chr1.3:103666-103685 MS.gene88938:CDS 45.0%
! AGCCAGCTTAAGAGGAGTAT+CGG - chr1.3:103227-103246 None:intergenic 45.0%
! GCTGACTTCTTCAAGATAGC+AGG + chr1.3:103244-103263 MS.gene88938:CDS 45.0%
!! CTGCGTCTCTAAGATTGTAC+TGG - chr1.3:103553-103572 None:intergenic 45.0%
!!! AAAAGACTTTTGAGGCAGGC+AGG - chr1.3:101921-101940 None:intergenic 45.0%
AACTCTGCAGGTCCAGTTTC+AGG + chr1.3:102983-103002 MS.gene88938:CDS 50.0%
AATCCTGTACTCACCTCCAC+CGG + chr1.3:102944-102963 MS.gene88938:CDS 50.0%
ACAACATGTCCCATTCCACC+TGG + chr1.3:102210-102229 MS.gene88938:CDS 50.0%
AGGACAAACCTGACAGCAAG+TGG + chr1.3:103067-103086 MS.gene88938:CDS 50.0%
AGGACAGTGTAATCACCAGC+GGG - chr1.3:102381-102400 None:intergenic 50.0%
ATAGCAGGTGTTTACCGTCC+TGG + chr1.3:103259-103278 MS.gene88938:CDS 50.0%
ATTGACCCACGTGAACGTCA+AGG - chr1.3:102853-102872 None:intergenic 50.0%
CAAAACCACCAGCAGCTTTG+TGG - chr1.3:102308-102327 None:intergenic 50.0%
CAGGTTTGTCCTAATGGAGC+GGG - chr1.3:103059-103078 None:intergenic 50.0%
CTTATCAATGGTCGTGGGTC+TGG + chr1.3:102559-102578 MS.gene88938:CDS 50.0%
CTTGGATTCCACAAAGCTGC+TGG + chr1.3:102297-102316 MS.gene88938:CDS 50.0%
GAATGTCTGGTCCTGGGAAT+TGG - chr1.3:101336-101355 None:intergenic 50.0%
GGAATGGAGTCCAGCAAAGA+AGG + chr1.3:102160-102179 MS.gene88938:intron 50.0%
GGTCTATCAGAGATGCTTCC+AGG - chr1.3:103280-103299 None:intergenic 50.0%
GTTGTGTGGCTGCAAAGGAT+AGG + chr1.3:101665-101684 MS.gene88938:intron 50.0%
TCTGATAGACCTAGTGGTGG+TGG + chr1.3:103289-103308 MS.gene88938:CDS 50.0%
TGGTATGATCCTTGCGGGTT+TGG - chr1.3:103100-103119 None:intergenic 50.0%
TTGACCCACGTGAACGTCAA+GGG - chr1.3:102852-102871 None:intergenic 50.0%
! CACAAAGCTGCTGGTGGTTT+TGG + chr1.3:102306-102325 MS.gene88938:CDS 50.0%
!! CAGCTTAAGAGGAGTATCGG+GGG - chr1.3:103224-103243 None:intergenic 50.0%
!! CCAGCTTAAGAGGAGTATCG+GGG - chr1.3:103225-103244 None:intergenic 50.0%
!! GCCAGCTTAAGAGGAGTATC+GGG - chr1.3:103226-103245 None:intergenic 50.0%
!!! AAAGCTGCTGGTGGTTTTGG+AGG + chr1.3:102309-102328 MS.gene88938:CDS 50.0%
AACGTCAAGGGAGGAGTAGG+TGG - chr1.3:102840-102859 None:intergenic 55.0%
ACCTGTTGGCGAACACCAAG+TGG - chr1.3:101174-101193 None:intergenic 55.0%
AGTTTCGCGTTCCACCACTC+AGG + chr1.3:103571-103590 MS.gene88938:CDS 55.0%
ATCAATGGTCGTGGGTCTGG+AGG + chr1.3:102562-102581 MS.gene88938:CDS 55.0%
ATCACCAGCGGGATCATCGA+AGG - chr1.3:102370-102389 None:intergenic 55.0%
ATTCCGGTGGAGGTGAGTAC+AGG - chr1.3:102950-102969 None:intergenic 55.0%
CAAGGGAGGAGTAGGTGGTT+TGG - chr1.3:102835-102854 None:intergenic 55.0%
CCCCGATACTCCTCTTAAGC+TGG + chr1.3:103222-103241 MS.gene88938:CDS 55.0%
CTAGTAACCGCGGATCAACC+TGG + chr1.3:102884-102903 MS.gene88938:CDS 55.0%
CTTCGCTACAGCAACTCTGC+AGG + chr1.3:102971-102990 MS.gene88938:CDS 55.0%
GCAGTCTGGATGGAGGACAA+TGG + chr1.3:103510-103529 MS.gene88938:intron 55.0%
GCTAGCAGATCTGGGTGGAA+TGG - chr1.3:101770-101789 None:intergenic 55.0%
GCTGTAGCGAAGAATTCCGG+TGG - chr1.3:102963-102982 None:intergenic 55.0%
GGATTCCACAAAGCTGCTGG+TGG + chr1.3:102300-102319 MS.gene88938:CDS 55.0%
GGTGGAGGTGAGTACAGGAT+TGG - chr1.3:102945-102964 None:intergenic 55.0%
GTAGCGAAGAATTCCGGTGG+AGG - chr1.3:102960-102979 None:intergenic 55.0%
GTGAACGTCAAGGGAGGAGT+AGG - chr1.3:102843-102862 None:intergenic 55.0%
GTGAAGCTAGCAGATCTGGG+TGG - chr1.3:101775-101794 None:intergenic 55.0%
GTTGCATGCAGTCTGGATGG+AGG + chr1.3:103503-103522 MS.gene88938:intron 55.0%
TCACCAGCGGGATCATCGAA+GGG - chr1.3:102369-102388 None:intergenic 55.0%
TCCTCCCTTGACGTTCACGT+GGG + chr1.3:102845-102864 MS.gene88938:CDS 55.0%
TGAACCAAGCCCGCTCCATT+AGG + chr1.3:103047-103066 MS.gene88938:CDS 55.0%
! AATGGAGCGGGCTTGGTTCA+AGG - chr1.3:103047-103066 None:intergenic 55.0%
! GATCCTTGCGGGTTTGGTCT+TGG - chr1.3:103094-103113 None:intergenic 55.0%
! GGAGGAGTAGGTGGTTTGGA+GGG - chr1.3:102831-102850 None:intergenic 55.0%
! TTGTCCTAATGGAGCGGGCT+TGG - chr1.3:103054-103073 None:intergenic 55.0%
!! ATTTGGATGGTGGGTCCACC+AGG - chr1.3:103016-103035 None:intergenic 55.0%
!! GTCTTGACCAGGTTGATCCG+CGG - chr1.3:102894-102913 None:intergenic 55.0%
!! GTCTTGGTCCACTTGCTGTC+AGG - chr1.3:103078-103097 None:intergenic 55.0%
!! TCCACTTGGTGTTCGCCAAC+AGG + chr1.3:101170-101189 MS.gene88938:CDS 55.0%
!! TTTGGATGGTGGGTCCACCA+GGG - chr1.3:103015-103034 None:intergenic 55.0%
ACCCACGTGAACGTCAAGGG+AGG - chr1.3:102849-102868 None:intergenic 60.0%
CTCCTCCCTTGACGTTCACG+TGG + chr1.3:102844-102863 MS.gene88938:CDS 60.0%
GCGGGATCATCGAAGGGAAC+TGG - chr1.3:102363-102382 None:intergenic 60.0%
GGACCAAGACCAAACCCGCA+AGG + chr1.3:103088-103107 MS.gene88938:CDS 60.0%
GTTCCCTTCGATGATCCCGC+TGG + chr1.3:102363-102382 MS.gene88938:CDS 60.0%
! GGGAGGAGTAGGTGGTTTGG+AGG - chr1.3:102832-102851 None:intergenic 60.0%
!! TTGGATGGTGGGTCCACCAG+GGG - chr1.3:103014-103033 None:intergenic 60.0%
!!! GACTTTTGAGGCAGGCAGGC+AGG - chr1.3:101917-101936 None:intergenic 60.0%
CCAGGGGGTGGACCTGAAAC+TGG - chr1.3:102998-103017 None:intergenic 65.0%
! CCAGTTTCAGGTCCACCCCC+TGG + chr1.3:102995-103014 MS.gene88938:CDS 65.0%
! GTTTCAGGTCCACCCCCTGG+TGG + chr1.3:102998-103017 MS.gene88938:CDS 65.0%
!! TGGATGGTGGGTCCACCAGG+GGG - chr1.3:103013-103032 None:intergenic 65.0%
!! ATGGTGGGTCCACCAGGGGG+TGG - chr1.3:103010-103029 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 101051 103805 101051 ID=MS.gene88938
chr1.3 mRNA 101051 103805 101051 ID=MS.gene88938.t1;Parent=MS.gene88938
chr1.3 exon 101051 101191 101051 ID=MS.gene88938.t1.exon1;Parent=MS.gene88938.t1
chr1.3 CDS 101051 101191 101051 ID=cds.MS.gene88938.t1;Parent=MS.gene88938.t1
chr1.3 exon 101316 101425 101316 ID=MS.gene88938.t1.exon2;Parent=MS.gene88938.t1
chr1.3 CDS 101316 101425 101316 ID=cds.MS.gene88938.t1;Parent=MS.gene88938.t1
chr1.3 exon 102161 102431 102161 ID=MS.gene88938.t1.exon3;Parent=MS.gene88938.t1
chr1.3 CDS 102161 102431 102161 ID=cds.MS.gene88938.t1;Parent=MS.gene88938.t1
chr1.3 exon 102505 102607 102505 ID=MS.gene88938.t1.exon4;Parent=MS.gene88938.t1
chr1.3 CDS 102505 102607 102505 ID=cds.MS.gene88938.t1;Parent=MS.gene88938.t1
chr1.3 exon 102723 103434 102723 ID=MS.gene88938.t1.exon5;Parent=MS.gene88938.t1
chr1.3 CDS 102723 103434 102723 ID=cds.MS.gene88938.t1;Parent=MS.gene88938.t1
chr1.3 exon 103514 103805 103514 ID=MS.gene88938.t1.exon6;Parent=MS.gene88938.t1
chr1.3 CDS 103514 103805 103514 ID=cds.MS.gene88938.t1;Parent=MS.gene88938.t1
Gene Sequence

>MS.gene88938

ATGGCACTGAACTTGGTGTTATTATGTGTTAGTGTTTACCTCTTTGCCATCACTACTACTATTGTTGCTGAAGATCCATACAGGTTCTTCAACTGGAACGTTACCTATGGTGACATTTATCCACTTGGTGTTCGCCAACAGGTATATTTATATTTCACTTTCATCCTTATACCTTATTGGATCTGAATCATTTTGATTAATTAATTGATTCATCAACTAGATAGACCAAACTTAATTTGTTATATGTTTTGTGACAAACATGCAGGGAATACTTATCAATGGCCAATTCCCAGGACCAGACATTCATTCTGTGACAAATGATAATCTCATTATCAATGTCTTCAACAGCTTGGACGAACCTTTTCTCATTTCATGGTTAGTTAGTACCTTTCACATTTCTTTTTTCATCCATCCTAGCCTCTATCTATGTGTAAATAACAAAAAGAATTAAACACGAAAGCATGTTATGTTGTTAGAGTTGGTTTCTTTTAATGATGTTCCTGTTAGTTAGTTAGCTAGCCACACGTTTGATATCTTCATATTCATCATATCATACTACCTAGTACTACTACATTTTGGGATGTTTGTTTGTTGGGTCACACCACTTGTATTGTGTTGTGTGGCTGCAAAGGATAGGAAAATGATGAAACCTTACAAAACACACATACTATACTATCTTATCTCTTGTAGTACTATGCTGGTCATGGTGGGTCAATCCATTCCACCCAGATCTGCTAGCTTCACTTTTATATTCATTTATATGGAGATGGAAGACATTTTCACAAGTAATATTAATATTCAATTCCAAATTAAGTAATTGGCCAGCACTGCAATTTGGCTTTCTATACTTGCTTGCTTGCTTGCCTGCCTGCCTGCCTCAAAAGTCTTTTTAATTGGGTGGACCCCATTTACTTTATTCATGCTTTGCTGTTCTCCTCTAGCTAACCATCAAATTGAGCTAATTATCTCCTTGATTACGTGAAATAGTAGTATATTAGGGACCACTACTTTTTAAATTATTGTGAATTTGTGATAATACTAACTGATAAGACATATAACCTTGCAATTGATTAATAAATGATGACATGACATGACATGACATAAAAACAGGAATGGAGTCCAGCAAAGAAGGAACTCATACGAAGATGGAGTGTTTGGAACAACATGTCCCATTCCACCTGGAAAGAACTTTACATACATACTTCAAGTGAAAGATCAAATTGGTAGTTTCTATTATTTCCCATCTCTTGGATTCCACAAAGCTGCTGGTGGTTTTGGAGGAATTAGAATCCTAAGTAGGCCAAGAATTCCAGTTCCCTTCGATGATCCCGCTGGTGATTACACTGTCCTTATTGGTGATTGGTACAAGTCCAACCACACGGTAACTAATCATTTACTATCTTCATCATCAATTTCATTTTCAATAAAATTGATTGTATTGTATTATGTGACAGGATTTGAAGGCCCAACTTGATAACGGAAACAAGTTACCTTTCCCTGATGGAATTCTTATCAATGGTCGTGGGTCTGGAGGATCATCTCTCAATGTGGAGCAAGGTACTGCATTACCTACATGAATAAGACTCATATAATGTTTCATTTGGCTTTCCTCAACATTAGTACTAAATTTGACACAACTAATATTTTTTGGCCCTTGTCATTGATGTTACAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGATTGGAAAATTCACTCAACTTTCGCATACAGAATCACAAGATGAAGCTGGTAGAAGTGGAAGGAACACACACCCTCCAAACCACCTACTCCTCCCTTGACGTTCACGTGGGTCAATCATACTCAGTTCTAGTAACCGCGGATCAACCTGGTCAAGACTATTATATTGTTGTTTCCTCTCGATTTACCAATCCTGTACTCACCTCCACCGGAATTCTTCGCTACAGCAACTCTGCAGGTCCAGTTTCAGGTCCACCCCCTGGTGGACCCACCATCCAAATTGATTGGTCCTTGAACCAAGCCCGCTCCATTAGGACAAACCTGACAGCAAGTGGACCAAGACCAAACCCGCAAGGATCATACCATTATGGCATGATAAACTTAACGAGGACAATTGTGCTATCAAGTTCAGCTGGACAAGTTAATGGGAAACAAAGATACGCAATTAACAGTGTGTCTTATGTTGCCCCCGATACTCCTCTTAAGCTGGCTGACTTCTTCAAGATAGCAGGTGTTTACCGTCCTGGAAGCATCTCTGATAGACCTAGTGGTGGTGGTATTTATCTCGACACTTCTGTTATGCAAACTGACTATAGAACATTTGTTGAGATTGTTTTCCAAAATGATGAAGACATCCTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTTGTTGGGTGAGTATGATTTTCCATCATATAGATCATTTTCATTTCTTTAAAATCAGTCTAATCTATATATGAATGTTGCATGCAGTCTGGATGGAGGACAATGGACAAGTGATAAAAGGAACCAGTACAATCTTAGAGACGCAGTTTCGCGTTCCACCACTCAGGTATATCCAAAGTCATGGACTGCTATCTATGTTGCACTTGACAATGTAGGAATGTGGAACTTGAGGTCAGAATTTTGGGCACGACAATATCTCGGGCAACAGTTTTATATGCGTGTATATACAACATCAACATCACTCAGAGATGAATACCCTATTCCTAAGAATGCATTACTTTGTGGTAGGGCAACTGGAAGACATACTCGACCCCTTTGA
Protein sequence

>MS.gene88938.t1

MALNLVLLCVSVYLFAITTTIVAEDPYRFFNWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLISWNGVQQRRNSYEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYKSNHTDLKAQLDNGNKLPFPDGILINGRGSGGSSLNVEQGKTYRLRISNVGLENSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPGQDYYIVVSSRFTNPVLTSTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINLTRTIVLSSSAGQVNGKQRYAINSVSYVAPDTPLKLADFFKIAGVYRPGSISDRPSGGGIYLDTSVMQTDYRTFVEIVFQNDEDILQSYHLDGYSFFVVGLDGGQWTSDKRNQYNLRDAVSRSTTQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSLRDEYPIPKNALLCGRATGRHTRPL