AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89018

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89018.t1 MTR_2g103795 94.942 257 13 0 1 257 19 275 9.35e-157 437
MS.gene89018.t1 MTR_2g103795 95.122 205 10 0 1 205 19 223 1.01e-116 333
MS.gene89018.t1 MTR_4g010250 49.789 237 101 3 2 237 21 240 2.25e-59 189
MS.gene89018.t1 MTR_4g114690 67.857 112 36 0 106 217 147 258 7.00e-48 160
MS.gene89018.t1 MTR_7g098450 48.361 122 60 1 103 224 211 329 8.31e-34 125
MS.gene89018.t1 MTR_7g098450 48.361 122 60 1 103 224 234 352 1.09e-33 125
MS.gene89018.t1 MTR_5g029910 52.941 102 48 0 118 219 119 220 3.61e-33 121
MS.gene89018.t1 MTR_7g099260 45.902 122 60 2 113 228 226 347 5.38e-30 115
MS.gene89018.t1 MTR_1g073230 38.158 152 88 2 80 231 93 238 1.85e-26 106
MS.gene89018.t1 MTR_1g073230 46.364 110 58 1 115 223 266 375 1.43e-22 95.5
MS.gene89018.t1 MTR_3g463450 40.816 98 58 0 121 218 399 496 2.71e-19 87.0
MS.gene89018.t1 MTR_5g082130 38.318 107 66 0 119 225 296 402 8.42e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89018.t1 AT5G20190 62.626 99 37 0 121 219 156 254 1.44e-40 141
MS.gene89018.t1 AT1G80130 62.626 99 37 0 119 217 163 261 3.35e-38 135
MS.gene89018.t1 AT4G32340 59.000 100 40 1 121 219 110 209 6.77e-35 125
MS.gene89018.t1 AT4G17940 57.292 96 41 0 124 219 153 248 3.57e-34 124
MS.gene89018.t1 AT2G29670 40.650 123 71 1 113 235 412 532 3.59e-22 95.5
MS.gene89018.t1 AT2G29670 40.650 123 71 1 113 235 412 532 3.59e-22 95.5
MS.gene89018.t1 AT1G04530 47.368 95 49 1 124 218 124 217 1.55e-21 91.7
MS.gene89018.t1 AT1G07280 41.346 104 61 0 120 223 434 537 8.12e-20 89.0
MS.gene89018.t1 AT1G07280 41.346 104 61 0 120 223 434 537 8.12e-20 89.0
MS.gene89018.t1 AT1G07280 41.346 104 61 0 120 223 434 537 8.12e-20 89.0
MS.gene89018.t1 AT3G47080 35.922 103 66 0 121 223 400 502 6.00e-14 71.6

Find 50 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTAAAAGAGAATTATT+TGG 0.185235 2.1:+1844870 None:intergenic
CTTGGACTTGCAAGTGTTCT+AGG 0.227205 2.1:+1845227 None:intergenic
CTCTCTATGCTGATTTAATA+TGG 0.230159 2.1:-1844309 MS.gene89018:CDS
TTTAACAGCCCTATCAAAAT+AGG 0.241375 2.1:+1844255 None:intergenic
GTATGTTGAAAGAGCCATTT+TGG 0.262466 2.1:-1844359 MS.gene89018:CDS
GGTTTGCTTCAATCATGTTT+TGG 0.294320 2.1:+1844892 None:intergenic
AAGTAGGTTCGTGGAGATTA+TGG 0.302005 2.1:-1844394 MS.gene89018:intron
ATCACTAGGGCTAGCCAAAA+TGG 0.330932 2.1:+1844345 None:intergenic
TAGTTTAGATAAGCAAGTTT+TGG 0.332832 2.1:-1845096 MS.gene89018:CDS
AGTAATGGGTGGTGGTGGTA+TGG 0.351405 2.1:-1845030 MS.gene89018:CDS
AATGGTAGTGGAAGAGATTC+TGG 0.357707 2.1:-1844975 MS.gene89018:CDS
GATTTCTCTTACCAATCATC+TGG 0.360855 2.1:+1844226 None:intergenic
GTAATGGGTGGTGGTGGTAT+GGG 0.372856 2.1:-1845029 MS.gene89018:CDS
CAAGTAAAAGAGAATTATTT+GGG 0.377661 2.1:+1844871 None:intergenic
TGGTGATTGAGTTCTTGTTC+AGG 0.381932 2.1:+1845254 None:intergenic
CTTCATATGCAAAATTCCTA+TGG 0.391469 2.1:-1843223 MS.gene89018:CDS
GAAAATAGTTCTCTCGTTGA+AGG 0.392335 2.1:+1845125 None:intergenic
GGTGGTATGGGGTGTGATGG+TGG 0.402385 2.1:-1845017 MS.gene89018:CDS
GGTGGTGGTATGGGGTGTGA+TGG 0.405771 2.1:-1845020 MS.gene89018:CDS
AAGTTGCAAACTTTAGTAAT+GGG 0.406381 2.1:-1845044 MS.gene89018:CDS
AGAGATTCTGGTGGTGGAAA+TGG 0.409069 2.1:-1844963 MS.gene89018:CDS
TGTGATGGTGGAAGTATTTG+TGG 0.443120 2.1:-1845005 MS.gene89018:CDS
AAAGTTGCAAACTTTAGTAA+TGG 0.445266 2.1:-1845045 MS.gene89018:CDS
AGTATTTGTGGTGGTTGTAA+TGG 0.447043 2.1:-1844993 MS.gene89018:CDS
TCTGGTGGTGGAAATGGAAA+TGG 0.452290 2.1:-1844957 MS.gene89018:CDS
AAAGATCAGGTGAAAGTGTA+TGG 0.469919 2.1:+1843150 None:intergenic
GGTGATTGAGTTCTTGTTCA+GGG 0.477042 2.1:+1845255 None:intergenic
TAATGGGTGGTGGTGGTATG+GGG 0.499472 2.1:-1845028 MS.gene89018:CDS
TGTGGTGGTTGTAATGGTAG+TGG 0.516522 2.1:-1844987 MS.gene89018:CDS
TTAAAAGTGATCCAGATGAT+TGG 0.517931 2.1:-1844237 MS.gene89018:intron
TTATCACATCAGCTATGTCC+TGG 0.518059 2.1:-1843246 MS.gene89018:intron
CAATTTGAAAAGTAGGTTCG+TGG 0.525753 2.1:-1844403 MS.gene89018:intron
ACTTTAGTAATGGGTGGTGG+TGG 0.545271 2.1:-1845035 MS.gene89018:CDS
AGTGGAAGAGATTCTGGTGG+TGG 0.546901 2.1:-1844969 MS.gene89018:CDS
CATCATCTTCAGCGTCCCAT+AGG 0.546961 2.1:+1843207 None:intergenic
GATAAAGCATCAGCATCACT+AGG 0.552225 2.1:+1844331 None:intergenic
TTCATATGCAAAATTCCTAT+GGG 0.567504 2.1:-1843222 MS.gene89018:CDS
GTGATTGAGTTCTTGTTCAG+GGG 0.572118 2.1:+1845256 None:intergenic
GACTTGCAAGTGTTCTAGGA+AGG 0.580355 2.1:+1845231 None:intergenic
CAAACTTTAGTAATGGGTGG+TGG 0.599262 2.1:-1845038 MS.gene89018:CDS
AATGGATGGGAAAATAATGA+TGG 0.600399 2.1:-1844939 MS.gene89018:CDS
TTGCAAACTTTAGTAATGGG+TGG 0.605342 2.1:-1845041 MS.gene89018:CDS
TGGTGGAAATGGAAATGGAT+GGG 0.611749 2.1:-1844952 MS.gene89018:CDS
TGGTGATGATTCTTAAGAAG+TGG 0.624905 2.1:+1845188 None:intergenic
ATAAAGCATCAGCATCACTA+GGG 0.631318 2.1:+1844332 None:intergenic
TTGCAAGTGTTCTAGGAAGG+TGG 0.634929 2.1:+1845234 None:intergenic
GTGGTGGAAATGGAAATGGA+TGG 0.643918 2.1:-1844953 MS.gene89018:CDS
GATGGTGGAAGTATTTGTGG+TGG 0.659019 2.1:-1845002 MS.gene89018:CDS
TGGAGATTATGGTAAAGCAG+AGG 0.689369 2.1:-1844383 MS.gene89018:CDS
GGTAGTGGAAGAGATTCTGG+TGG 0.752433 2.1:-1844972 MS.gene89018:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACACAAATAAAATTATTT+AGG + chr2.1:1844608-1844627 None:intergenic 10.0%
!! AATTTCATCATAATATTAAT+TGG + chr2.1:1844699-1844718 None:intergenic 10.0%
!! AAAAAAAATCCTACAAAAAA+CGG - chr2.1:1844743-1844762 MS.gene89018:intron 15.0%
!! AAAATATCAAACTTGAAATT+TGG - chr2.1:1843696-1843715 MS.gene89018:intron 15.0%
!! AATTAGATTATCTATCATTT+GGG - chr2.1:1844865-1844884 MS.gene89018:CDS 15.0%
!! ACAATATATAAATGAAGATT+AGG - chr2.1:1843829-1843848 MS.gene89018:intron 15.0%
!! ATGATGAAATTAATTAACAA+GGG - chr2.1:1844708-1844727 MS.gene89018:intron 15.0%
!! TAATTAGATTATCTATCATT+TGG - chr2.1:1844864-1844883 MS.gene89018:CDS 15.0%
!! TATAACATCAAATAAAAATC+AGG + chr2.1:1845071-1845090 None:intergenic 15.0%
!! TATGATGAAATTAATTAACA+AGG - chr2.1:1844707-1844726 MS.gene89018:intron 15.0%
!! TGTATTGTGATTAAAATATA+TGG - chr2.1:1843916-1843935 MS.gene89018:intron 15.0%
!!! TAGGTAAAATATTTTGTAAT+TGG - chr2.1:1843853-1843872 MS.gene89018:intron 15.0%
!! AAAAAAATCCTACAAAAAAC+GGG - chr2.1:1844744-1844763 MS.gene89018:intron 20.0%
!! AGAACAAAATATGTTACAAA+AGG + chr2.1:1844426-1844445 None:intergenic 20.0%
!! ATAAACATGAGAAATACTTA+GGG - chr2.1:1844450-1844469 MS.gene89018:intron 20.0%
!! ATAAAGTTCATAGATGAATT+AGG + chr2.1:1844214-1844233 None:intergenic 20.0%
!! CAAGTAAAAGAGAATTATTT+GGG + chr2.1:1843498-1843517 None:intergenic 20.0%
!! TAATGTTCAATTTGAAAAGT+AGG - chr2.1:1843956-1843975 MS.gene89018:intron 20.0%
!! TTAAGTTATGTGTTGAAATA+TGG + chr2.1:1843664-1843683 None:intergenic 20.0%
!! TTAGTAATTAGTTGTTAGAT+TGG + chr2.1:1844959-1844978 None:intergenic 20.0%
!! TTCTTTCCAAAAAAATACAA+GGG - chr2.1:1845034-1845053 MS.gene89018:CDS 20.0%
!! TTTCTTTCCAAAAAAATACA+AGG - chr2.1:1845033-1845052 MS.gene89018:CDS 20.0%
!!! TTTATTTGTGTTTCTAGTTA+AGG - chr2.1:1844615-1844634 MS.gene89018:intron 20.0%
! AAACACAAATGTAAAAGGTT+TGG - chr2.1:1844475-1844494 MS.gene89018:intron 25.0%
! AAAGTTGCAAACTTTAGTAA+TGG - chr2.1:1843321-1843340 MS.gene89018:intron 25.0%
! AAGTATTTCTCATGTTTATG+CGG + chr2.1:1844449-1844468 None:intergenic 25.0%
! AAGTTGCAAACTTTAGTAAT+GGG - chr2.1:1843322-1843341 MS.gene89018:intron 25.0%
! AGAGAAATCTTAAATCTATG+TGG - chr2.1:1844154-1844173 MS.gene89018:intron 25.0%
! ATATAAACCAAATGATACAG+TGG - chr2.1:1844341-1844360 MS.gene89018:CDS 25.0%
! ATATAAATGAAGATTAGGCT+AGG - chr2.1:1843834-1843853 MS.gene89018:intron 25.0%
! ATGTGCAAATTTGTATATGT+AGG + chr2.1:1844665-1844684 None:intergenic 25.0%
! CATAAACATGAGAAATACTT+AGG - chr2.1:1844449-1844468 MS.gene89018:intron 25.0%
! CCAAGTAAAAGAGAATTATT+TGG + chr2.1:1843499-1843518 None:intergenic 25.0%
! TGTGCAAATTTGTATATGTA+GGG + chr2.1:1844664-1844683 None:intergenic 25.0%
! TTCATATGCAAAATTCCTAT+GGG - chr2.1:1845144-1845163 MS.gene89018:CDS 25.0%
!! ACGAATTAGACTTAAACTTT+TGG + chr2.1:1843791-1843810 None:intergenic 25.0%
!! CCAAATAATTCTCTTTTACT+TGG - chr2.1:1843496-1843515 MS.gene89018:intron 25.0%
!! TAGTTTAGATAAGCAAGTTT+TGG - chr2.1:1843270-1843289 MS.gene89018:intron 25.0%
!!! AACAAACCCTTGTATTTTTT+TGG + chr2.1:1845043-1845062 None:intergenic 25.0%
!!! ATTTTTGTTCTGTTTCTTCT+TGG + chr2.1:1843201-1843220 None:intergenic 25.0%
!!! TTATGCTAAGTTTTTGAAAG+AGG - chr2.1:1843522-1843541 MS.gene89018:intron 25.0%
AATGGATGGGAAAATAATGA+TGG - chr2.1:1843427-1843446 MS.gene89018:intron 30.0%
AATTAACAAGGGAACAACAA+GGG - chr2.1:1844719-1844738 MS.gene89018:intron 30.0%
AGCTCAACTAATTTACGATA+GGG - chr2.1:1844895-1844914 MS.gene89018:CDS 30.0%
CTTCATATGCAAAATTCCTA+TGG - chr2.1:1845143-1845162 MS.gene89018:CDS 30.0%
GAGAATGTATGTATACATAG+AGG + chr2.1:1844192-1844211 None:intergenic 30.0%
GGGATAAACACAAATGTAAA+AGG - chr2.1:1844470-1844489 MS.gene89018:intron 30.0%
TAATTAACAAGGGAACAACA+AGG - chr2.1:1844718-1844737 MS.gene89018:intron 30.0%
TAGCTCAACTAATTTACGAT+AGG - chr2.1:1844894-1844913 MS.gene89018:CDS 30.0%
TTAAAAGTGATCCAGATGAT+TGG - chr2.1:1844129-1844148 MS.gene89018:intron 30.0%
TTTAACAGCCCTATCAAAAT+AGG + chr2.1:1844114-1844133 None:intergenic 30.0%
! GATTATCTATCATTTGGGAT+TGG - chr2.1:1844870-1844889 MS.gene89018:CDS 30.0%
!! CTCTCTATGCTGATTTAATA+TGG - chr2.1:1844057-1844076 MS.gene89018:intron 30.0%
!!! AGACGTTTTGCTTTATTTTC+TGG - chr2.1:1845003-1845022 MS.gene89018:CDS 30.0%
!!! TATATAGACCCGTTTTTTGT+AGG + chr2.1:1844755-1844774 None:intergenic 30.0%
AACATCTACCATGTCACATA+TGG + chr2.1:1844261-1844280 None:intergenic 35.0%
AGTATTTGTGGTGGTTGTAA+TGG - chr2.1:1843373-1843392 MS.gene89018:intron 35.0%
ATAACATGATCAAGCTCAAG+TGG + chr2.1:1843583-1843602 None:intergenic 35.0%
CAATTTGAAAAGTAGGTTCG+TGG - chr2.1:1843963-1843982 MS.gene89018:intron 35.0%
GAAAATAGTTCTCTCGTTGA+AGG + chr2.1:1843244-1843263 None:intergenic 35.0%
GAAGAAGGTGGTAAAAAAGT+AGG - chr2.1:1843298-1843317 MS.gene89018:intron 35.0%
GAATTCATATTGCATGCAGT+CGG + chr2.1:1843756-1843775 None:intergenic 35.0%
GATTTCTCTTACCAATCATC+TGG + chr2.1:1844143-1844162 None:intergenic 35.0%
TACGATAGGGTCAAAAAAGT+TGG - chr2.1:1844908-1844927 MS.gene89018:CDS 35.0%
TCTTGATCCACTGTATCATT+TGG + chr2.1:1844351-1844370 None:intergenic 35.0%
TTAGCTCCTAGAAAAAGATC+AGG + chr2.1:1845232-1845251 None:intergenic 35.0%
! AAAGATCAGGTGAAAGTGTA+TGG + chr2.1:1845219-1845238 None:intergenic 35.0%
! ATAAAGCATCAGCATCACTA+GGG + chr2.1:1844037-1844056 None:intergenic 35.0%
! CTTTCACCTGATCTTTTTCT+AGG - chr2.1:1845223-1845242 MS.gene89018:CDS 35.0%
! GTATGTTGAAAGAGCCATTT+TGG - chr2.1:1844007-1844026 MS.gene89018:intron 35.0%
! TGGTGATGATTCTTAAGAAG+TGG + chr2.1:1843181-1843200 None:intergenic 35.0%
! TTGCAAACTTTAGTAATGGG+TGG - chr2.1:1843325-1843344 MS.gene89018:intron 35.0%
!! GATCTTTTTCTAGGAGCTAA+TGG - chr2.1:1845232-1845251 MS.gene89018:CDS 35.0%
!! GGCTCTTATCAGTTTTATGT+TGG + chr2.1:1845198-1845217 None:intergenic 35.0%
!! GGTTTGCTTCAATCATGTTT+TGG + chr2.1:1843477-1843496 None:intergenic 35.0%
!!! AGCTGAAGCCTATTTTGATA+GGG - chr2.1:1844103-1844122 MS.gene89018:intron 35.0%
!!! CAAGTTTTGGATCATGAAGA+AGG - chr2.1:1843283-1843302 MS.gene89018:intron 35.0%
!!! CCTGATAGTTGGTCTTTTAA+GGG + chr2.1:1844805-1844824 None:intergenic 35.0%
!!! GGTGCAGATTTTTTATGTCT+TGG + chr2.1:1843160-1843179 None:intergenic 35.0%
!!! TCCTGATAGTTGGTCTTTTA+AGG + chr2.1:1844806-1844825 None:intergenic 35.0%
AAGTAGGTTCGTGGAGATTA+TGG - chr2.1:1843972-1843991 MS.gene89018:intron 40.0%
AGACCAACTATCAGGAACAA+AGG - chr2.1:1844810-1844829 MS.gene89018:intron 40.0%
ATAAATTTCCCGCATTCACG+CGG - chr2.1:1843601-1843620 MS.gene89018:intron 40.0%
CCCTTAAAAGACCAACTATC+AGG - chr2.1:1844802-1844821 MS.gene89018:intron 40.0%
CTTCCTTTGTTCCTGATAGT+TGG + chr2.1:1844816-1844835 None:intergenic 40.0%
GATAGGGTCAAAAAAGTTGG+AGG - chr2.1:1844911-1844930 MS.gene89018:CDS 40.0%
GGTGATTGAGTTCTTGTTCA+GGG + chr2.1:1843114-1843133 None:intergenic 40.0%
GTGATTGAGTTCTTGTTCAG+GGG + chr2.1:1843113-1843132 None:intergenic 40.0%
TAGAGACACCATATGTGACA+TGG - chr2.1:1844250-1844269 MS.gene89018:CDS 40.0%
TGGAGATTATGGTAAAGCAG+AGG - chr2.1:1843983-1844002 MS.gene89018:intron 40.0%
TGGTGATTGAGTTCTTGTTC+AGG + chr2.1:1843115-1843134 None:intergenic 40.0%
TGGTGGAAATGGAAATGGAT+GGG - chr2.1:1843414-1843433 MS.gene89018:intron 40.0%
TTATCACATCAGCTATGTCC+TGG - chr2.1:1845120-1845139 MS.gene89018:CDS 40.0%
! GATAAAGCATCAGCATCACT+AGG + chr2.1:1844038-1844057 None:intergenic 40.0%
! GGAATTTTGCATATGAAGCC+AGG + chr2.1:1845141-1845160 None:intergenic 40.0%
! GTCGGTACATTGATGATTGT+TGG + chr2.1:1843738-1843757 None:intergenic 40.0%
!! AATGGTAGTGGAAGAGATTC+TGG - chr2.1:1843391-1843410 MS.gene89018:intron 40.0%
!! CAAACTTTAGTAATGGGTGG+TGG - chr2.1:1843328-1843347 MS.gene89018:intron 40.0%
!! GTTTTGGATCATGAAGAAGG+TGG - chr2.1:1843286-1843305 MS.gene89018:intron 40.0%
!! TGTGATGGTGGAAGTATTTG+TGG - chr2.1:1843361-1843380 MS.gene89018:intron 40.0%
!!! GAGCTGAAGCCTATTTTGAT+AGG - chr2.1:1844102-1844121 MS.gene89018:intron 40.0%
!!! GATAGTTGGTCTTTTAAGGG+TGG + chr2.1:1844802-1844821 None:intergenic 40.0%
AGGTGGTTGTTGATCGAGAT+AGG - chr2.1:1843633-1843652 MS.gene89018:intron 45.0%
CTTGGACTTGCAAGTGTTCT+AGG + chr2.1:1843142-1843161 None:intergenic 45.0%
TGTGGTGGTTGTAATGGTAG+TGG - chr2.1:1843379-1843398 MS.gene89018:intron 45.0%
! AGTTGTTAGATTGGTCCGCA+GGG + chr2.1:1844950-1844969 None:intergenic 45.0%
! GTGGTGGAAATGGAAATGGA+TGG - chr2.1:1843413-1843432 MS.gene89018:intron 45.0%
! TAGTTGTTAGATTGGTCCGC+AGG + chr2.1:1844951-1844970 None:intergenic 45.0%
!! ACTTTAGTAATGGGTGGTGG+TGG - chr2.1:1843331-1843350 MS.gene89018:intron 45.0%
!! AGAGATTCTGGTGGTGGAAA+TGG - chr2.1:1843403-1843422 MS.gene89018:intron 45.0%
!! ATCACTAGGGCTAGCCAAAA+TGG + chr2.1:1844024-1844043 None:intergenic 45.0%
!! GACTTGCAAGTGTTCTAGGA+AGG + chr2.1:1843138-1843157 None:intergenic 45.0%
!! GATGGTGGAAGTATTTGTGG+TGG - chr2.1:1843364-1843383 MS.gene89018:intron 45.0%
!! TCTGGTGGTGGAAATGGAAA+TGG - chr2.1:1843409-1843428 MS.gene89018:intron 45.0%
!! TTGCAAGTGTTCTAGGAAGG+TGG + chr2.1:1843135-1843154 None:intergenic 45.0%
!!! TTATTTAATTTTTTTTATTG+TGG - chr2.1:1844574-1844593 MS.gene89018:intron 5.0%
!!! TTTTTATTTTTAAGATAAAT+TGG - chr2.1:1844516-1844535 MS.gene89018:intron 5.0%
AGTGGAAGAGATTCTGGTGG+TGG - chr2.1:1843397-1843416 MS.gene89018:intron 50.0%
ATGTGCTAACCGCGTGAATG+CGG + chr2.1:1843613-1843632 None:intergenic 50.0%
CATCATCTTCAGCGTCCCAT+AGG + chr2.1:1845162-1845181 None:intergenic 50.0%
CATTCACGCGGTTAGCACAT+AGG - chr2.1:1843613-1843632 MS.gene89018:intron 50.0%
TGGTCCGCAGGGTTTGAATT+CGG + chr2.1:1844939-1844958 None:intergenic 50.0%
!! AGTAATGGGTGGTGGTGGTA+TGG - chr2.1:1843336-1843355 MS.gene89018:intron 50.0%
!! GGTAGTGGAAGAGATTCTGG+TGG - chr2.1:1843394-1843413 MS.gene89018:intron 50.0%
!! GTAATGGGTGGTGGTGGTAT+GGG - chr2.1:1843337-1843356 MS.gene89018:intron 50.0%
!! TAATGGGTGGTGGTGGTATG+GGG - chr2.1:1843338-1843357 MS.gene89018:intron 50.0%
GGACCCGAATTCAAACCCTG+CGG - chr2.1:1844932-1844951 MS.gene89018:CDS 55.0%
GGTCCGCAGGGTTTGAATTC+GGG + chr2.1:1844938-1844957 None:intergenic 55.0%
TCACGCGGTTAGCACATAGG+TGG - chr2.1:1843616-1843635 MS.gene89018:intron 55.0%
TGTGCTAACCGCGTGAATGC+GGG + chr2.1:1843612-1843631 None:intergenic 55.0%
GGTGGTATGGGGTGTGATGG+TGG - chr2.1:1843349-1843368 MS.gene89018:intron 60.0%
! GGTGGTGGTATGGGGTGTGA+TGG - chr2.1:1843346-1843365 MS.gene89018:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 1843100 1845288 1843100 ID=MS.gene89018
chr2.1 mRNA 1843100 1845288 1843100 ID=MS.gene89018.t1;Parent=MS.gene89018
chr2.1 exon 1844845 1845288 1844845 ID=MS.gene89018.t1.exon1;Parent=MS.gene89018.t1
chr2.1 CDS 1844845 1845288 1844845 ID=cds.MS.gene89018.t1;Parent=MS.gene89018.t1
chr2.1 exon 1844238 1844410 1844238 ID=MS.gene89018.t1.exon2;Parent=MS.gene89018.t1
chr2.1 CDS 1844238 1844410 1844238 ID=cds.MS.gene89018.t1;Parent=MS.gene89018.t1
chr2.1 exon 1843100 1843256 1843100 ID=MS.gene89018.t1.exon3;Parent=MS.gene89018.t1
chr2.1 CDS 1843100 1843256 1843100 ID=cds.MS.gene89018.t1;Parent=MS.gene89018.t1
Gene Sequence

>MS.gene89018

ATGGAATCTTCCCCTGAACAAGAACTCAATCACCACCTTCCTAGAACACTTGCAAGTCCAAGACATAAAAAATCTGCACCACTTCTTAAGAATCATCACCAAGAAGAAACAGAACAAAAATTTCACAAGAAAAAAACAACACCTTCAACGAGAGAACTATTTTCAAGCTCTAGTTTAGATAAGCAAGTTTTGGATCATGAAGAAGGTGGTAAAAAAGTAGGAAAGTTGCAAACTTTAGTAATGGGTGGTGGTGGTATGGGGTGTGATGGTGGAAGTATTTGTGGTGGTTGTAATGGTAGTGGAAGAGATTCTGGTGGTGGAAATGGAAATGGATGGGAAAATAATGATGGTAGAGATGAAACTGATGCTTATTACCAAAACATGATTGAAGCAAACCCAAATAATTCTCTTTTACTTGGAAATTATGCTAAGTTTTTGAAAGAGGTAATTAATTTGATTTATTTGAGTAAGAGTGATTGACCACTTGAGCTTGATCATGTTATAAATTTCCCGCATTCACGCGGTTAGCACATAGGTGGTTGTTGATCGAGATAGGACGTTCCATATTTCAACACATAACTTAATTTTTTTAAACTAAAATATCAAACTTGAAATTTGGATCGTTTAATCTAGATCCAACAATCATCAATGTACCGACTGCATGCAATATGAATTCGAAAACTATGAACCAAAAGTTTAAGTCTAATTCGTCAGATCAAATACTTACTTACAATATATAAATGAAGATTAGGCTAGGTAAAATATTTTGTAATTGGATCATCATTTTGAGAAATTAAAATGTAAAGAGAAATATAGTGTATTGTGATTAAAATATATGGTTTGTCACATAATAAATTAATGTTCAATTTGAAAAGTAGGTTCGTGGAGATTATGGTAAAGCAGAGGAGTATGTTGAAAGAGCCATTTTGGCTAGCCCTAGTGATGCTGATGCTTTATCTCTCTATGCTGATTTAATATGGCAAACAGAGAAGAATGCTGATCGAGCTGAAGCCTATTTTGATAGGGCTGTTAAAAGTGATCCAGATGATTGGTAAGAGAAATCTTAAATCTATGTGGATTATGTCTTTTCCTCTATGTATACATACATTCTCCTAATTCATCTATGAACTTTATTGTTTGAACATCAAACTAGAGACACCATATGTGACATGGTAGATGTTTATATCTCTCTTTTTCTTTTGCTTTTTATCTTCTATAATTTACATATTTAAAAAATGCAAATATAAACCAAATGATACAGTGGATCAAGATTTTGATGTTTAAAAGTCATTTATCTATATAGAACTAGATGCATCTTTCATTCCTTTTGTAACATATTTTGTTCTCCGCATAAACATGAGAAATACTTAGGGATAAACACAAATGTAAAAGGTTTGGACACACTCACACAAATGCTTTTTATTTTTAAGATAAATTGGTTTAATGATGTTGAAAGATGTGACTAATTTATTTATTATTTAATTTTTTTTATTGTGGAGTGTGTGCCTAAATAATTTTATTTGTGTTTCTAGTTAAGGCTTGTTAATGTGTTAAACTGCATCCCTACATATACAAATTTGCACATGATAGAATAATCCAATTAATATTATGATGAAATTAATTAACAAGGGAACAACAAGGGTAAAAAAAATCCTACAAAAAACGGGTCTATATATATAAATTGATTGTTTCTAAGTGTCCACCCTTAAAAGACCAACTATCAGGAACAAAGGAAGTTCTAGTGATTAGCAAAATGTGATGTGATAATTAGATTATCTATCATTTGGGATTGGATAGCTCAACTAATTTACGATAGGGTCAAAAAAGTTGGAGGACCCGAATTCAAACCCTGCGGACCAATCTAACAACTAATTACTAACATTGACTGCTGCAAAAATTCTTTAGACGTTTTGCTTTATTTTCTGGCTTTTTTTTTCTTTCCAAAAAAATACAAGGGTTTGTTTGTGTCCTGATTTTTATTTGATGTTATATATAAAAACTTATGTGTAAGTTCATATTATTATCACATCAGCTATGTCCTGGCTTCATATGCAAAATTCCTATGGGACGCTGAAGATGATGAAGATAATGACTGCCAACATAAAACTGATAAGAGCCATACACTTTCACCTGATCTTTTTCTAGGAGCTAATGGTCGTTCTCATGTCACTGCAACCTCTAAAATATAA
Protein sequence

>MS.gene89018.t1

MESSPEQELNHHLPRTLASPRHKKSAPLLKNHHQEETEQKFHKKKTTPSTRELFSSSSLDKQVLDHEEGGKKVGKLQTLVMGGGGMGCDGGSICGGCNGSGRDSGGGNGNGWENNDGRDETDAYYQNMIEANPNNSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYADLIWQTEKNADRAEAYFDRAVKSDPDDCYVLASYAKFLWDAEDDEDNDCQHKTDKSHTLSPDLFLGANGRSHVTATSKI