AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051367


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051367.t1 MTR_7g103870 86.481 503 8 5 1 446 1 500 0.0 856
MS.gene051367.t1 MTR_7g072460 25.641 312 184 12 106 395 152 437 3.08e-13 71.6
MS.gene051367.t1 MTR_7g092050 24.031 258 163 8 107 346 136 378 4.66e-12 68.6
MS.gene051367.t1 MTR_1g099400 22.697 304 185 15 177 444 232 521 6.98e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051367.t1 AT5G03700 46.087 460 180 12 35 442 37 480 5.84e-129 382

Find 139 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCTCAAAGGGTATTAT+TGG 0.229085 7.3:+10252970 MS.gene051367:CDS
GGTGCTTACTCTTGCATAAA+TGG 0.242269 7.3:-10252838 None:intergenic
GTTCCTAACATTGTTCCTAT+TGG 0.255100 7.3:-10253386 None:intergenic
CCCTTTCCCTTGAACCACTA+TGG 0.283811 7.3:+10252394 MS.gene051367:CDS
TGGAATTGTGGTTTCTGTTT+TGG 0.285828 7.3:+10253484 MS.gene051367:CDS
AGAAACTTCGTCGTTTCTTT+TGG 0.327593 7.3:+10252929 MS.gene051367:CDS
AATAGGGTTGGGGTTATTGT+TGG 0.329282 7.3:+10253464 MS.gene051367:CDS
TCGGATCCAAGATTCCTATA+CGG 0.334849 7.3:-10253605 None:intergenic
GAAAATCACGACAAAGAAAA+AGG 0.336915 7.3:+10252729 MS.gene051367:CDS
CCATACGAACCACATGGATT+TGG 0.349570 7.3:-10253053 None:intergenic
CAGCAGGTTTAGAACTTGTT+TGG 0.369084 7.3:-10252881 None:intergenic
GAAAGAGGAGGATGAGAATT+GGG 0.370412 7.3:+10253571 MS.gene051367:CDS
TGGGGTTATTGTTGGAATTG+TGG 0.370640 7.3:+10253472 MS.gene051367:CDS
ACGTTTAGGTGACACTTTCA+TGG 0.378138 7.3:+10252698 MS.gene051367:intron
GAATCTCAAAGGGTATTATT+GGG 0.385265 7.3:+10252971 MS.gene051367:CDS
GGGCTTTGCCTGGCCCGTAT+AGG 0.385386 7.3:+10253591 MS.gene051367:CDS
GTAAGCACCGAGGGTTATAT+TGG 0.386812 7.3:+10252852 MS.gene051367:CDS
TAGGTTTGAACCGGGTGAAC+CGG 0.391695 7.3:+10253124 MS.gene051367:CDS
TGAAAGAGGAGGATGAGAAT+TGG 0.393666 7.3:+10253570 MS.gene051367:CDS
GATGAGAATTGGGCTTTGCC+TGG 0.395502 7.3:+10253581 MS.gene051367:CDS
AAACATAACAAAACCCGGTT+TGG 0.400335 7.3:-10253355 None:intergenic
CCTGGCCCGTATAGGAATCT+TGG 0.400630 7.3:+10253599 MS.gene051367:CDS
ACCAAGATACTGTGTGGGTT+GGG 0.401401 7.3:-10252425 None:intergenic
TTGGTTGGGATTGTTGTTGT+TGG 0.406997 7.3:+10253503 MS.gene051367:CDS
CACGGAGAAGGAATAGGGTT+GGG 0.407268 7.3:+10253453 MS.gene051367:CDS
ATAGGAACAATGTTAGGAAC+AGG 0.415563 7.3:+10253389 MS.gene051367:CDS
GCAAAATCTAAAATCATAGA+AGG 0.419839 7.3:+10252807 MS.gene051367:CDS
TATCCAATAGGAACAATGTT+AGG 0.420533 7.3:+10253383 MS.gene051367:CDS
TAACAAAGCTAGGTTTGAAC+CGG 0.430362 7.3:+10253115 MS.gene051367:CDS
TTGAATTTCTGAACATCAGC+AGG 0.432916 7.3:-10252897 None:intergenic
TGGTGGATGTTGACCATGAT+AGG 0.433516 7.3:-10252506 None:intergenic
CACAAGTTTCGCTAATAGCT+TGG 0.440991 7.3:-10253025 None:intergenic
CGTTTAGGTGACACTTTCAT+GGG 0.443125 7.3:+10252699 MS.gene051367:intron
GAACCCGAGAGAGAAGTTTC+CGG 0.448425 7.3:-10252328 None:intergenic
ACCATGATAGGGTTCTTTGT+GGG 0.450423 7.3:-10252494 None:intergenic
ACCCAACCCACACAGTATCT+TGG 0.453874 7.3:+10252424 MS.gene051367:CDS
GTGCTTACTCTTGCATAAAT+GGG 0.460763 7.3:-10252837 None:intergenic
CTCGACGGATCTAAAACTTT+CGG 0.461250 7.3:-10253624 None:intergenic
CCAAATCCATGTGGTTCGTA+TGG 0.462161 7.3:+10253053 MS.gene051367:CDS
GGGATTCAACAAAGTCTAGT+TGG 0.465277 7.3:+10252991 MS.gene051367:CDS
AAGGTGCACGGAGAAGGAAT+AGG 0.470387 7.3:+10253447 MS.gene051367:CDS
CGGATCCAAGATTCCTATAC+GGG 0.473474 7.3:-10253604 None:intergenic
GCGTTGTATAATAACCAAAC+CGG 0.476217 7.3:+10253341 MS.gene051367:CDS
TACAAGATTCTGAGAAAGGT+TGG 0.478101 7.3:+10253221 MS.gene051367:CDS
TCCGGTAGGATCGGTGAGGA+TGG 0.479284 7.3:-10252310 None:intergenic
CTTGTTTAGATAACAAAGCT+AGG 0.482136 7.3:+10253105 MS.gene051367:CDS
GACCATGATAGGGTTCTTTG+TGG 0.482393 7.3:-10252495 None:intergenic
GACCAAGATACTGTGTGGGT+TGG 0.482474 7.3:-10252426 None:intergenic
GATTGTTGCAAAAGATGTTA+AGG 0.483421 7.3:-10252214 None:intergenic
AAGGTAGTTTGTTAACAAAA+CGG 0.484249 7.3:+10252748 MS.gene051367:CDS
AACCACGCGCTCACCGTTGG+TGG 0.488054 7.3:-10252523 None:intergenic
TAGTTACAAGATTCTGAGAA+AGG 0.492029 7.3:+10253217 MS.gene051367:CDS
TCCATAGTGGTTCAAGGGAA+AGG 0.497589 7.3:-10252395 None:intergenic
CAAGACTACCGTTGAAGAAG+AGG 0.498874 7.3:-10252461 None:intergenic
AGGTGCACGGAGAAGGAATA+GGG 0.499165 7.3:+10253448 MS.gene051367:CDS
ATCGGTGAGGATGGGTTGAA+AGG 0.499686 7.3:-10252301 None:intergenic
TGGCCGTCCATAGTGGTTCA+AGG 0.506314 7.3:-10252401 None:intergenic
TTCGTATGGTTTGTGTACCC+CGG 0.508542 7.3:+10253067 MS.gene051367:CDS
TGGTTAGGTTAGAACAAGAC+GGG 0.512333 7.3:+10252949 MS.gene051367:CDS
AAGCCTTTGAGAAGCTCTTG+TGG 0.514091 7.3:-10252249 None:intergenic
GATGATGATGGTGATGGAGG+TGG 0.514144 7.3:+10253161 MS.gene051367:CDS
GAGGATGGGTTGAAAGGAGG+TGG 0.514601 7.3:-10252295 None:intergenic
CCGGTAGGATCGGTGAGGAT+GGG 0.515364 7.3:-10252309 None:intergenic
GAAGAAGAGGCGCGTGGTGT+GGG 0.517147 7.3:-10252448 None:intergenic
TTTGAGAAGCTCTTGTGGGA+TGG 0.521091 7.3:-10252244 None:intergenic
CCATAGTGGTTCAAGGGAAA+GGG 0.521431 7.3:-10252394 None:intergenic
GACTTGTGCAGTGGAGGGAT+TGG 0.523694 7.3:+10253185 MS.gene051367:CDS
CTACCGGAAACTTCTCTCTC+GGG 0.525044 7.3:+10252325 MS.gene051367:CDS
CCTACCGGAAACTTCTCTCT+CGG 0.525872 7.3:+10252324 MS.gene051367:CDS
TCTAAAATCATAGAAGGTGA+TGG 0.528671 7.3:+10252813 MS.gene051367:CDS
TTTAATGATGATGATGGTGA+TGG 0.529593 7.3:+10253155 MS.gene051367:CDS
AGGTTTGAACCGGGTGAACC+GGG 0.529961 7.3:+10253125 MS.gene051367:CDS
TGAGGAAAGGTGCACGGAGA+AGG 0.531685 7.3:+10253441 MS.gene051367:CDS
AACAAGACGGGAATCTCAAA+GGG 0.531757 7.3:+10252961 MS.gene051367:CDS
CCAAGATTCCTATACGGGCC+AGG 0.531866 7.3:-10253599 None:intergenic
AGCCTTTGAGAAGCTCTTGT+GGG 0.535324 7.3:-10252248 None:intergenic
GTTGGGTTGGCCGTCCATAG+TGG 0.535752 7.3:-10252408 None:intergenic
TCGTATGGTTTGTGTACCCC+GGG 0.537638 7.3:+10253068 MS.gene051367:CDS
GAACAAGACGGGAATCTCAA+AGG 0.540237 7.3:+10252960 MS.gene051367:CDS
TGAAGAAGAGGCGCGTGGTG+TGG 0.545063 7.3:-10252449 None:intergenic
GGTGAGGATGGGTTGAAAGG+AGG 0.550449 7.3:-10252298 None:intergenic
GGTGGAGACTTGTGCAGTGG+AGG 0.550599 7.3:+10253179 MS.gene051367:CDS
AAACACCCACCCGGTTCACC+CGG 0.551323 7.3:-10253134 None:intergenic
AGGAACAGGGGATGAGTCAA+AGG 0.556839 7.3:+10253403 MS.gene051367:CDS
CCCATCCTCACCGATCCTAC+CGG 0.557827 7.3:+10252309 MS.gene051367:CDS
TCCTCTAGTAACTCTTTATG+CGG 0.558201 7.3:-10253254 None:intergenic
CGTTGTATAATAACCAAACC+GGG 0.564803 7.3:+10253342 MS.gene051367:CDS
AGAGAAGTTTCCGGTAGGAT+CGG 0.568706 7.3:-10252319 None:intergenic
TATGGTTTGTGTACCCCGGG+TGG 0.569680 7.3:+10253071 MS.gene051367:CDS
ATGGTTTGTGTACCCCGGGT+GGG 0.571622 7.3:+10253072 MS.gene051367:CDS
GTTATCTTTAACAGAATGTG+AGG 0.575632 7.3:+10253286 MS.gene051367:CDS
ATCCCACAAGAGCTTCTCAA+AGG 0.581973 7.3:+10252246 MS.gene051367:CDS
TCTAGTAACTCTTTATGCGG+TGG 0.582196 7.3:-10253251 None:intergenic
AAGGAGGTGGATGTTGAGAG+TGG 0.584748 7.3:-10252282 None:intergenic
ACCCACAAAGAACCCTATCA+TGG 0.585380 7.3:+10252493 MS.gene051367:CDS
TTGGTTAGGTTAGAACAAGA+CGG 0.585405 7.3:+10252948 MS.gene051367:CDS
TTGAACCGGGTGAACCGGGT+GGG 0.586209 7.3:+10253129 MS.gene051367:CDS
GTGGAGACTTGTGCAGTGGA+GGG 0.586292 7.3:+10253180 MS.gene051367:CDS
GTACATTCCAATATAACCCT+CGG 0.587317 7.3:-10252859 None:intergenic
AATGATGATGATGGTGATGG+AGG 0.587786 7.3:+10253158 MS.gene051367:CDS
GGTGGATGTTGACCATGATA+GGG 0.588463 7.3:-10252505 None:intergenic
GGATGTTGAGAGTGGAGATG+AGG 0.588810 7.3:-10252274 None:intergenic
TTCCCTTGAACCACTATGGA+CGG 0.592559 7.3:+10252398 MS.gene051367:CDS
GCACGGAGAAGGAATAGGGT+TGG 0.594548 7.3:+10253452 MS.gene051367:CDS
ACGGAGAAGGAATAGGGTTG+GGG 0.595008 7.3:+10253454 MS.gene051367:CDS
GGCCGTCCATAGTGGTTCAA+GGG 0.595077 7.3:-10252400 None:intergenic
CAAGAACAACTAGACCCACC+CGG 0.597425 7.3:-10253086 None:intergenic
AGATACTGTGTGGGTTGGGT+TGG 0.597895 7.3:-10252421 None:intergenic
ACAGGGGATGAGTCAAAGGT+GGG 0.600129 7.3:+10253407 MS.gene051367:CDS
TTTGAACCGGGTGAACCGGG+TGG 0.602123 7.3:+10253128 MS.gene051367:CDS
TTAAAGTGAGGAAAGGTGCA+CGG 0.603602 7.3:+10253435 MS.gene051367:CDS
ATCCAAAACATAACAAAACC+CGG 0.603883 7.3:-10253360 None:intergenic
ACCACGCGCCTCTTCTTCAA+CGG 0.605894 7.3:+10252453 MS.gene051367:CDS
AACAGGGGATGAGTCAAAGG+TGG 0.611797 7.3:+10253406 MS.gene051367:CDS
AAGCTCTTGTGGGATGGAAG+TGG 0.612049 7.3:-10252238 None:intergenic
AAGAACAACTAGACCCACCC+GGG 0.614763 7.3:-10253085 None:intergenic
CACAAACCATACGAACCACA+TGG 0.615636 7.3:-10253059 None:intergenic
GATTCTGAGAAAGGTTGGAG+TGG 0.618823 7.3:+10253226 MS.gene051367:CDS
TTGTGATATGTGTAGTGAGG+TGG 0.623058 7.3:+10253528 MS.gene051367:CDS
CGCACTACTCGACATCTCGA+CGG 0.625373 7.3:-10253639 None:intergenic
AGGAACAATGTTAGGAACAG+GGG 0.629514 7.3:+10253391 MS.gene051367:CDS
TATGCAAGAGTAAGCACCGA+GGG 0.634595 7.3:+10252843 MS.gene051367:CDS
GTGTTGTGATATGTGTAGTG+AGG 0.634695 7.3:+10253525 MS.gene051367:CDS
AACAAAGCTAGGTTTGAACC+GGG 0.646696 7.3:+10253116 MS.gene051367:CDS
TAGGAACAATGTTAGGAACA+GGG 0.647964 7.3:+10253390 MS.gene051367:CDS
TTATCTTTAACAGAATGTGA+GGG 0.662315 7.3:+10253287 MS.gene051367:CDS
CCGAGAGAGAAGTTTCCGGT+AGG 0.665125 7.3:-10252324 None:intergenic
GTGGGACCAAGATACTGTGT+GGG 0.669264 7.3:-10252430 None:intergenic
AAGGGAAAGGGTGTGAACGA+CGG 0.672396 7.3:-10252382 None:intergenic
ACCGCATAAAGAGTTACTAG+AGG 0.673293 7.3:+10253253 MS.gene051367:CDS
TGTGGGACCAAGATACTGTG+TGG 0.677336 7.3:-10252431 None:intergenic
TCATGGTCAACATCCACCAA+CGG 0.689681 7.3:+10252510 MS.gene051367:CDS
GGAGGTGGAGACTTGTGCAG+TGG 0.693599 7.3:+10253176 MS.gene051367:CDS
ACCGTTGAAGAAGAGGCGCG+TGG 0.703254 7.3:-10252454 None:intergenic
TCATCATTAAAACACCCACC+CGG 0.718915 7.3:-10253143 None:intergenic
TGTGAGCTTCCAAATCCATG+TGG 0.726162 7.3:+10253044 MS.gene051367:CDS
AGTTTCCGGTAGGATCGGTG+AGG 0.731059 7.3:-10252314 None:intergenic
AGAACAACTAGACCCACCCG+GGG 0.777454 7.3:-10253084 None:intergenic
TTATGCAAGAGTAAGCACCG+AGG 0.833555 7.3:+10252842 MS.gene051367:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGAAAAATTGTAAATGTT+GGG + chr7.3:10253316-10253335 MS.gene051367:CDS 20.0%
!!! AACGGTTATTTTTGTTATAT+TGG + chr7.3:10252766-10252785 MS.gene051367:CDS 20.0%
! GAGAAAAATTGTAAATGTTG+GGG + chr7.3:10253317-10253336 MS.gene051367:CDS 25.0%
! GTGAGAAAAATTGTAAATGT+TGG + chr7.3:10253315-10253334 MS.gene051367:CDS 25.0%
! TTATCTTTAACAGAATGTGA+GGG + chr7.3:10253287-10253306 MS.gene051367:CDS 25.0%
!! GCAAAATCTAAAATCATAGA+AGG + chr7.3:10252807-10252826 MS.gene051367:CDS 25.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG + chr7.3:10252748-10252767 MS.gene051367:CDS 25.0%
!!! TATGTTTTGGATTATCCAAT+AGG + chr7.3:10253371-10253390 MS.gene051367:CDS 25.0%
AATCTCTACTCTTTACGTTT+AGG + chr7.3:10252684-10252703 MS.gene051367:intron 30.0%
ACGTAAAGAGTAGAGATTAT+TGG - chr7.3:10252682-10252701 None:intergenic 30.0%
ATCCAAAACATAACAAAACC+CGG - chr7.3:10253363-10253382 None:intergenic 30.0%
CTTGTTTAGATAACAAAGCT+AGG + chr7.3:10253105-10253124 MS.gene051367:CDS 30.0%
GAAAATCACGACAAAGAAAA+AGG + chr7.3:10252729-10252748 MS.gene051367:CDS 30.0%
GATTGTTGCAAAAGATGTTA+AGG - chr7.3:10252217-10252236 None:intergenic 30.0%
GTTATCTTTAACAGAATGTG+AGG + chr7.3:10253286-10253305 MS.gene051367:CDS 30.0%
TATCCAATAGGAACAATGTT+AGG + chr7.3:10253383-10253402 MS.gene051367:CDS 30.0%
TGTTTGTACTAGTAAGTTTG+AGG - chr7.3:10252559-10252578 None:intergenic 30.0%
! TAGTTACAAGATTCTGAGAA+AGG + chr7.3:10253217-10253236 MS.gene051367:CDS 30.0%
! TCTAAAATCATAGAAGGTGA+TGG + chr7.3:10252813-10252832 MS.gene051367:CDS 30.0%
!! GAATCTCAAAGGGTATTATT+GGG + chr7.3:10252971-10252990 MS.gene051367:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG + chr7.3:10253155-10253174 MS.gene051367:CDS 30.0%
!!! GGTTATTTTAAAGTGAGGAA+AGG + chr7.3:10253428-10253447 MS.gene051367:CDS 30.0%
AAACATAACAAAACCCGGTT+TGG - chr7.3:10253358-10253377 None:intergenic 35.0%
AAATGGAAACTTTCCCAAAG+TGG - chr7.3:10252600-10252619 None:intergenic 35.0%
ATAGGAACAATGTTAGGAAC+AGG + chr7.3:10253389-10253408 MS.gene051367:CDS 35.0%
CGTTGTATAATAACCAAACC+GGG + chr7.3:10253342-10253361 MS.gene051367:CDS 35.0%
GCGTTGTATAATAACCAAAC+CGG + chr7.3:10253341-10253360 MS.gene051367:CDS 35.0%
GTACATTCCAATATAACCCT+CGG - chr7.3:10252862-10252881 None:intergenic 35.0%
GTGCTTACTCTTGCATAAAT+GGG - chr7.3:10252840-10252859 None:intergenic 35.0%
GTTCCTAACATTGTTCCTAT+TGG - chr7.3:10253389-10253408 None:intergenic 35.0%
TAACAAAGCTAGGTTTGAAC+CGG + chr7.3:10253115-10253134 MS.gene051367:CDS 35.0%
TAGGAACAATGTTAGGAACA+GGG + chr7.3:10253390-10253409 MS.gene051367:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG - chr7.3:10253257-10253276 None:intergenic 35.0%
TGAGGTGGAAAAAGAGAAAA+GGG + chr7.3:10253543-10253562 MS.gene051367:CDS 35.0%
TTGAATTTCTGAACATCAGC+AGG - chr7.3:10252900-10252919 None:intergenic 35.0%
TTGGTTAGGTTAGAACAAGA+CGG + chr7.3:10252948-10252967 MS.gene051367:CDS 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG + chr7.3:10252929-10252948 MS.gene051367:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG + chr7.3:10253221-10253240 MS.gene051367:CDS 35.0%
! TGGAATTGTGGTTTCTGTTT+TGG + chr7.3:10253484-10253503 MS.gene051367:CDS 35.0%
!! GAAGTTTTGATCTTGTACGA+GGG - chr7.3:10252634-10252653 None:intergenic 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG + chr7.3:10252970-10252989 MS.gene051367:CDS 35.0%
!! TGAAGTTTTGATCTTGTACG+AGG - chr7.3:10252635-10252654 None:intergenic 35.0%
!!! AACCGGGTTTTGTTATGTTT+TGG + chr7.3:10253358-10253377 MS.gene051367:CDS 35.0%
!!! AGGTGGGTTATTTTAAAGTG+AGG + chr7.3:10253423-10253442 MS.gene051367:CDS 35.0%
!!! ATTGTGGTTTCTGTTTTGGT+TGG + chr7.3:10253488-10253507 MS.gene051367:CDS 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG + chr7.3:10253149-10253168 MS.gene051367:CDS 35.0%
!!! GTTTTATGTCGTTTTGGTTG+TGG - chr7.3:10252359-10252378 None:intergenic 35.0%
!!! TTGTGGTTTCTGTTTTGGTT+GGG + chr7.3:10253489-10253508 MS.gene051367:CDS 35.0%
AACAAAGCTAGGTTTGAACC+GGG + chr7.3:10253116-10253135 MS.gene051367:CDS 40.0%
AACAAGACGGGAATCTCAAA+GGG + chr7.3:10252961-10252980 MS.gene051367:CDS 40.0%
AATAGGGTTGGGGTTATTGT+TGG + chr7.3:10253464-10253483 MS.gene051367:CDS 40.0%
ACCATGATAGGGTTCTTTGT+GGG - chr7.3:10252497-10252516 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG + chr7.3:10253253-10253272 MS.gene051367:CDS 40.0%
ACGTTTAGGTGACACTTTCA+TGG + chr7.3:10252698-10252717 MS.gene051367:intron 40.0%
AGGAACAATGTTAGGAACAG+GGG + chr7.3:10253391-10253410 MS.gene051367:CDS 40.0%
AGGTGGAAAAAGAGAAAAGG+GGG + chr7.3:10253545-10253564 MS.gene051367:CDS 40.0%
CACAAGTTTCGCTAATAGCT+TGG - chr7.3:10253028-10253047 None:intergenic 40.0%
CGTTTAGGTGACACTTTCAT+GGG + chr7.3:10252699-10252718 MS.gene051367:intron 40.0%
GAAAGAGGAGGATGAGAATT+GGG + chr7.3:10253571-10253590 MS.gene051367:CDS 40.0%
GAGGTGGAAAAAGAGAAAAG+GGG + chr7.3:10253544-10253563 MS.gene051367:CDS 40.0%
GGGATTCAACAAAGTCTAGT+TGG + chr7.3:10252991-10253010 MS.gene051367:CDS 40.0%
GGTGCTTACTCTTGCATAAA+TGG - chr7.3:10252841-10252860 None:intergenic 40.0%
GTGAGGTGGAAAAAGAGAAA+AGG + chr7.3:10253542-10253561 MS.gene051367:CDS 40.0%
GTGTTGTGATATGTGTAGTG+AGG + chr7.3:10253525-10253544 MS.gene051367:CDS 40.0%
TCATCATTAAAACACCCACC+CGG - chr7.3:10253146-10253165 None:intergenic 40.0%
TCGGATCCAAGATTCCTATA+CGG - chr7.3:10253608-10253627 None:intergenic 40.0%
TCTAGTAACTCTTTATGCGG+TGG - chr7.3:10253254-10253273 None:intergenic 40.0%
TGAAAGAGGAGGATGAGAAT+TGG + chr7.3:10253570-10253589 MS.gene051367:CDS 40.0%
TGGGGTTATTGTTGGAATTG+TGG + chr7.3:10253472-10253491 MS.gene051367:CDS 40.0%
TGGTTAGGTTAGAACAAGAC+GGG + chr7.3:10252949-10252968 MS.gene051367:CDS 40.0%
TTGTGATATGTGTAGTGAGG+TGG + chr7.3:10253528-10253547 MS.gene051367:CDS 40.0%
! AACCTCAAAAACGCCACTTT+GGG + chr7.3:10252584-10252603 MS.gene051367:intron 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG - chr7.3:10252884-10252903 None:intergenic 40.0%
! CTCGACGGATCTAAAACTTT+CGG - chr7.3:10253627-10253646 None:intergenic 40.0%
! TTAAAGTGAGGAAAGGTGCA+CGG + chr7.3:10253435-10253454 MS.gene051367:CDS 40.0%
! TTGGTTGGGATTGTTGTTGT+TGG + chr7.3:10253503-10253522 MS.gene051367:CDS 40.0%
!! AATGATGATGATGGTGATGG+AGG + chr7.3:10253158-10253177 MS.gene051367:CDS 40.0%
!! ATCTTGTACGAGGGTATTTG+TGG - chr7.3:10252625-10252644 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG + chr7.3:10252934-10252953 MS.gene051367:CDS 40.0%
!! TCTTGTACGAGGGTATTTGT+GGG - chr7.3:10252624-10252643 None:intergenic 40.0%
!!! CAACGGTAGTCTTGTTTTGT+GGG + chr7.3:10252470-10252489 MS.gene051367:CDS 40.0%
!!! TCAACGGTAGTCTTGTTTTG+TGG + chr7.3:10252469-10252488 MS.gene051367:CDS 40.0%
!!! TTATGTCGTTTTGGTTGTGG+CGG - chr7.3:10252356-10252375 None:intergenic 40.0%
ACCAAGATACTGTGTGGGTT+GGG - chr7.3:10252428-10252447 None:intergenic 45.0%
ACCCACAAAGAACCCTATCA+TGG + chr7.3:10252493-10252512 MS.gene051367:CDS 45.0%
AGAGAAGTTTCCGGTAGGAT+CGG - chr7.3:10252322-10252341 None:intergenic 45.0%
ATCCCACAAGAGCTTCTCAA+AGG + chr7.3:10252246-10252265 MS.gene051367:CDS 45.0%
CAACCTCAAAAACGCCACTT+TGG + chr7.3:10252583-10252602 MS.gene051367:intron 45.0%
CAAGACTACCGTTGAAGAAG+AGG - chr7.3:10252464-10252483 None:intergenic 45.0%
CACAAACCATACGAACCACA+TGG - chr7.3:10253062-10253081 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG + chr7.3:10253053-10253072 MS.gene051367:CDS 45.0%
CCATACGAACCACATGGATT+TGG - chr7.3:10253056-10253075 None:intergenic 45.0%
CCATAGTGGTTCAAGGGAAA+GGG - chr7.3:10252397-10252416 None:intergenic 45.0%
CGGATCCAAGATTCCTATAC+GGG - chr7.3:10253607-10253626 None:intergenic 45.0%
GAACAAGACGGGAATCTCAA+AGG + chr7.3:10252960-10252979 MS.gene051367:CDS 45.0%
GACCATGATAGGGTTCTTTG+TGG - chr7.3:10252498-10252517 None:intergenic 45.0%
GGTGGATGTTGACCATGATA+GGG - chr7.3:10252508-10252527 None:intergenic 45.0%
TCATGGTCAACATCCACCAA+CGG + chr7.3:10252510-10252529 MS.gene051367:CDS 45.0%
TCCATAGTGGTTCAAGGGAA+AGG - chr7.3:10252398-10252417 None:intergenic 45.0%
TGTGAGCTTCCAAATCCATG+TGG + chr7.3:10253044-10253063 MS.gene051367:CDS 45.0%
TTCCCTTGAACCACTATGGA+CGG + chr7.3:10252398-10252417 MS.gene051367:CDS 45.0%
TTTGAGAAGCTCTTGTGGGA+TGG - chr7.3:10252247-10252266 None:intergenic 45.0%
! AAAAGGGGGTATGAAAGAGG+AGG + chr7.3:10253559-10253578 MS.gene051367:CDS 45.0%
! AAGCCTTTGAGAAGCTCTTG+TGG - chr7.3:10252252-10252271 None:intergenic 45.0%
! AGCCTTTGAGAAGCTCTTGT+GGG - chr7.3:10252251-10252270 None:intergenic 45.0%
! GAGAAAAGGGGGTATGAAAG+AGG + chr7.3:10253556-10253575 MS.gene051367:CDS 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG + chr7.3:10253226-10253245 MS.gene051367:CDS 45.0%
! TGGTGGATGTTGACCATGAT+AGG - chr7.3:10252509-10252528 None:intergenic 45.0%
! TTATGCAAGAGTAAGCACCG+AGG + chr7.3:10252842-10252861 MS.gene051367:CDS 45.0%
! TTCCCAAAGTGGCGTTTTTG+AGG - chr7.3:10252589-10252608 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG + chr7.3:10253067-10253086 MS.gene051367:CDS 45.0%
!! CGGCGAGTTTTATGTCGTTT+TGG - chr7.3:10252365-10252384 None:intergenic 45.0%
!! CTTGTACGAGGGTATTTGTG+GGG - chr7.3:10252623-10252642 None:intergenic 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG + chr7.3:10252852-10252871 MS.gene051367:CDS 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG + chr7.3:10252843-10252862 MS.gene051367:CDS 45.0%
AACAGGGGATGAGTCAAAGG+TGG + chr7.3:10253406-10253425 MS.gene051367:CDS 50.0%
AAGAACAACTAGACCCACCC+GGG - chr7.3:10253088-10253107 None:intergenic 50.0%
AAGCTCTTGTGGGATGGAAG+TGG - chr7.3:10252241-10252260 None:intergenic 50.0%
AAGGAGGTGGATGTTGAGAG+TGG - chr7.3:10252285-10252304 None:intergenic 50.0%
AAGGTGCACGGAGAAGGAAT+AGG + chr7.3:10253447-10253466 MS.gene051367:CDS 50.0%
ACAGGGGATGAGTCAAAGGT+GGG + chr7.3:10253407-10253426 MS.gene051367:CDS 50.0%
ACCCAACCCACACAGTATCT+TGG + chr7.3:10252424-10252443 MS.gene051367:CDS 50.0%
ACGGAGAAGGAATAGGGTTG+GGG + chr7.3:10253454-10253473 MS.gene051367:CDS 50.0%
AGGAACAGGGGATGAGTCAA+AGG + chr7.3:10253403-10253422 MS.gene051367:CDS 50.0%
AGGTGCACGGAGAAGGAATA+GGG + chr7.3:10253448-10253467 MS.gene051367:CDS 50.0%
CAAGAACAACTAGACCCACC+CGG - chr7.3:10253089-10253108 None:intergenic 50.0%
CACGGAGAAGGAATAGGGTT+GGG + chr7.3:10253453-10253472 MS.gene051367:CDS 50.0%
CCCTTTCCCTTGAACCACTA+TGG + chr7.3:10252394-10252413 MS.gene051367:CDS 50.0%
CCTACCGGAAACTTCTCTCT+CGG + chr7.3:10252324-10252343 MS.gene051367:CDS 50.0%
CTACCGGAAACTTCTCTCTC+GGG + chr7.3:10252325-10252344 MS.gene051367:CDS 50.0%
GAACCCGAGAGAGAAGTTTC+CGG - chr7.3:10252331-10252350 None:intergenic 50.0%
GACCAAGATACTGTGTGGGT+TGG - chr7.3:10252429-10252448 None:intergenic 50.0%
GATGAGAATTGGGCTTTGCC+TGG + chr7.3:10253581-10253600 MS.gene051367:CDS 50.0%
GGATGTTGAGAGTGGAGATG+AGG - chr7.3:10252277-10252296 None:intergenic 50.0%
GTGGGACCAAGATACTGTGT+GGG - chr7.3:10252433-10252452 None:intergenic 50.0%
TAGGTTTGAACCGGGTGAAC+CGG + chr7.3:10253124-10253143 MS.gene051367:CDS 50.0%
TGTGGGACCAAGATACTGTG+TGG - chr7.3:10252434-10252453 None:intergenic 50.0%
! AAGGGAAAGGGTGTGAACGA+CGG - chr7.3:10252385-10252404 None:intergenic 50.0%
! TCGTATGGTTTGTGTACCCC+GGG + chr7.3:10253068-10253087 MS.gene051367:CDS 50.0%
!! AGATACTGTGTGGGTTGGGT+TGG - chr7.3:10252424-10252443 None:intergenic 50.0%
!! ATCGGTGAGGATGGGTTGAA+AGG - chr7.3:10252304-10252323 None:intergenic 50.0%
!! CGAGGGTATTTGTGGGGAAA+TGG - chr7.3:10252617-10252636 None:intergenic 50.0%
!! GATGATGATGGTGATGGAGG+TGG + chr7.3:10253161-10253180 MS.gene051367:CDS 50.0%
ACCACGCGCCTCTTCTTCAA+CGG + chr7.3:10252453-10252472 MS.gene051367:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG - chr7.3:10253087-10253106 None:intergenic 55.0%
AGGTTTGAACCGGGTGAACC+GGG + chr7.3:10253125-10253144 MS.gene051367:CDS 55.0%
AGTTTCCGGTAGGATCGGTG+AGG - chr7.3:10252317-10252336 None:intergenic 55.0%
CCAAGATTCCTATACGGGCC+AGG - chr7.3:10253602-10253621 None:intergenic 55.0%
CCGAGAGAGAAGTTTCCGGT+AGG - chr7.3:10252327-10252346 None:intergenic 55.0%
CCTGGCCCGTATAGGAATCT+TGG + chr7.3:10253599-10253618 MS.gene051367:CDS 55.0%
CGCACTACTCGACATCTCGA+CGG - chr7.3:10253642-10253661 None:intergenic 55.0%
GACTTGTGCAGTGGAGGGAT+TGG + chr7.3:10253185-10253204 MS.gene051367:CDS 55.0%
GCACGGAGAAGGAATAGGGT+TGG + chr7.3:10253452-10253471 MS.gene051367:CDS 55.0%
GGCCGTCCATAGTGGTTCAA+GGG - chr7.3:10252403-10252422 None:intergenic 55.0%
GTGGAGACTTGTGCAGTGGA+GGG + chr7.3:10253180-10253199 MS.gene051367:CDS 55.0%
TGGCCGTCCATAGTGGTTCA+AGG - chr7.3:10252404-10252423 None:intergenic 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG + chr7.3:10253072-10253091 MS.gene051367:CDS 55.0%
! TATGGTTTGTGTACCCCGGG+TGG + chr7.3:10253071-10253090 MS.gene051367:CDS 55.0%
! TGAGGAAAGGTGCACGGAGA+AGG + chr7.3:10253441-10253460 MS.gene051367:CDS 55.0%
!! GAGGATGGGTTGAAAGGAGG+TGG - chr7.3:10252298-10252317 None:intergenic 55.0%
!! GGTGAGGATGGGTTGAAAGG+AGG - chr7.3:10252301-10252320 None:intergenic 55.0%
!!! TGTCGTTTTGGTTGTGGCGG+AGG - chr7.3:10252353-10252372 None:intergenic 55.0%
AAACACCCACCCGGTTCACC+CGG - chr7.3:10253137-10253156 None:intergenic 60.0%
AAGAACCACGCGCTCACCGT+TGG - chr7.3:10252529-10252548 None:intergenic 60.0%
CCCATCCTCACCGATCCTAC+CGG + chr7.3:10252309-10252328 MS.gene051367:CDS 60.0%
CCGGTAGGATCGGTGAGGAT+GGG - chr7.3:10252312-10252331 None:intergenic 60.0%
GGAGGTGGAGACTTGTGCAG+TGG + chr7.3:10253176-10253195 MS.gene051367:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG + chr7.3:10253179-10253198 MS.gene051367:CDS 60.0%
TCCGGTAGGATCGGTGAGGA+TGG - chr7.3:10252313-10252332 None:intergenic 60.0%
TTGAACCGGGTGAACCGGGT+GGG + chr7.3:10253129-10253148 MS.gene051367:CDS 60.0%
TTTGAACCGGGTGAACCGGG+TGG + chr7.3:10253128-10253147 MS.gene051367:CDS 60.0%
! ACCGTTGAAGAAGAGGCGCG+TGG - chr7.3:10252457-10252476 None:intergenic 60.0%
! GAAGAAGAGGCGCGTGGTGT+GGG - chr7.3:10252451-10252470 None:intergenic 60.0%
! TGAAGAAGAGGCGCGTGGTG+TGG - chr7.3:10252452-10252471 None:intergenic 60.0%
!! GTTGGGTTGGCCGTCCATAG+TGG - chr7.3:10252411-10252430 None:intergenic 60.0%
AACCACGCGCTCACCGTTGG+TGG - chr7.3:10252526-10252545 None:intergenic 65.0%
ATCCACCAACGGTGAGCGCG+TGG + chr7.3:10252521-10252540 MS.gene051367:intron 65.0%
GGGCTTTGCCTGGCCCGTAT+AGG + chr7.3:10253591-10253610 MS.gene051367:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 10252153 10253667 10252153 ID=MS.gene051367
chr7.3 mRNA 10252153 10253667 10252153 ID=MS.gene051367.t1;Parent=MS.gene051367
chr7.3 exon 10252153 10252531 10252153 ID=MS.gene051367.t1.exon1;Parent=MS.gene051367.t1
chr7.3 CDS 10252153 10252531 10252153 ID=cds.MS.gene051367.t1;Parent=MS.gene051367.t1
chr7.3 exon 10252706 10253667 10252706 ID=MS.gene051367.t1.exon2;Parent=MS.gene051367.t1
chr7.3 CDS 10252706 10253667 10252706 ID=cds.MS.gene051367.t1;Parent=MS.gene051367.t1
Gene Sequence

>MS.gene051367

ATGTATGCAACACATAAGCTTCATTTCACAAATATAATTCTCGTTCTATTCTTTTCTACTACCTTAACATCTTTTGCAACAATCACCACTTCCATCCCACAAGAGCTTCTCAAAGGCTTCTCCTCATCTCCACTCTCAACATCCACCTCCTTTCAACCCATCCTCACCGATCCTACCGGAAACTTCTCTCTCGGGTTCCTCCGCCACAACCAAAACGACATAAAACTCGCCGTCGTTCACACCCTTTCCCTTGAACCACTATGGACGGCCAACCCAACCCACACAGTATCTTGGTCCCACACCACGCGCCTCTTCTTCAACGGTAGTCTTGTTTTGTGGGACCCACAAAGAACCCTATCATGGTCAACATCCACCAACGGTGAGCGCGTGGTTCTTCTCAATACCTCAAACTTACTAGTACAAACAAAAACAACCTCAAAAACGCCACTTTGGGAAAGTTTCCATTTCCCCACAAATACCCTCGTACAAGATCAAAACTTCACTTCAAACATGTCTTTAGTATCAACCAATAATCTCTACTCTTTACGTTTAGGTGACACTTTCATGGGTTTATACGAAAATCACGACAAAGAAAAAGGTAGTTTGTTAACAAAACGGTTATTTTTGTTATATTGGAAACGTTCTGCACTACAAGCAAAATCTAAAATCATAGAAGGTGATGGACCCATTTATGCAAGAGTAAGCACCGAGGGTTATATTGGAATGTACCAAACAAGTTCTAAACCTGCTGATGTTCAGAAATTCAACAGTTTTCAAGAAACTTCGTCGTTTCTTTTGGTTAGGTTAGAACAAGACGGGAATCTCAAAGGGTATTATTGGGATTCAACAAAGTCTAGTTGGATACTTAACTTCCAAGCTATTAGCGAAACTTGTGAGCTTCCAAATCCATGTGGTTCGTATGGTTTGTGTACCCCGGGTGGGTCTAGTTGTTCTTGTTTAGATAACAAAGCTAGGTTTGAACCGGGTGAACCGGGTGGGTGTTTTAATGATGATGATGGTGATGGAGGTGGAGACTTGTGCAGTGGAGGGATTGGCGAAGAGAATAGTTACAAGATTCTGAGAAAGGTTGGAGTGGAGCCACCGCATAAAGAGTTACTAGAGGAAGTAACAACGTTATCTTTAACAGAATGTGAGGGTTTGTGTGAGAAAAATTGTAAATGTTGGGGAGCGTTGTATAATAACCAAACCGGGTTTTGTTATGTTTTGGATTATCCAATAGGAACAATGTTAGGAACAGGGGATGAGTCAAAGGTGGGTTATTTTAAAGTGAGGAAAGGTGCACGGAGAAGGAATAGGGTTGGGGTTATTGTTGGAATTGTGGTTTCTGTTTTGGTTGGGATTGTTGTTGTTGGTGTTGTGATATGTGTAGTGAGGTGGAAAAAGAGAAAAGGGGGTATGAAAGAGGAGGATGAGAATTGGGCTTTGCCTGGCCCGTATAGGAATCTTGGATCCGAAAGTTTTAGATCCGTCGAGATGTCGAGTAGTGCGCATTAA

Protein sequence

>MS.gene051367.t1

MYATHKLHFTNIILVLFFSTTLTSFATITTSIPQELLKGFSSSPLSTSTSFQPILTDPTGNFSLGFLRHNQNDIKLAVVHTLSLEPLWTANPTHTVSWSHTTRLFFNGSLVLWDPQRTLSWSTSTNGDTFMGLYENHDKEKGSLLTKRLFLLYWKRSALQAKSKIIEGDGPIYARVSTEGYIGMYQTSSKPADVQKFNSFQETSSFLLVRLEQDGNLKGYYWDSTKSSWILNFQAISETCELPNPCGSYGLCTPGGSSCSCLDNKARFEPGEPGGCFNDDDGDGGGDLCSGGIGEENSYKILRKVGVEPPHKELLEEVTTLSLTECEGLCEKNCKCWGALYNNQTGFCYVLDYPIGTMLGTGDESKVGYFKVRKGARRRNRVGVIVGIVVSVLVGIVVVGVVICVVRWKKRKGGMKEEDENWALPGPYRNLGSESFRSVEMSSSAH