AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051364


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051364.t1 MTR_7g103870 86.905 168 19 1 121 288 205 369 3.18e-83 259
MS.gene051364.t1 MTR_7g103870 94.488 127 6 1 12 137 1 127 1.76e-61 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051364.t1 AT5G03700 46.875 160 70 6 129 287 208 353 8.33e-40 145
MS.gene051364.t1 AT5G03700 57.609 92 39 0 46 137 37 128 1.72e-27 111

Find 98 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCTCAAAGGGTATTAT+TGG 0.229085 7.3:-10167705 MS.gene051364:CDS
GGTGCTTACTCTTGCATAAA+TGG 0.242269 7.3:+10167837 None:intergenic
CCCTTTCCCTTGAACCACTA+TGG 0.283811 7.3:-10168282 MS.gene051364:CDS
AGAAACTTCGTCGTTTCTTT+TGG 0.327593 7.3:-10167746 MS.gene051364:CDS
CCATACGAACCACATGGATT+TGG 0.349570 7.3:+10167622 None:intergenic
CAGCAGGTTTAGAACTTGTT+TGG 0.369084 7.3:+10167794 None:intergenic
TTGAATATTGTAGAAGCAAC+TGG 0.379851 7.3:+10168548 None:intergenic
GAATCTCAAAGGGTATTATT+GGG 0.385265 7.3:-10167704 MS.gene051364:CDS
GTAAGCACCGAGGGTTATAT+TGG 0.386812 7.3:-10167823 MS.gene051364:CDS
TAGGTTTGAACCGGGTGAAC+CGG 0.391695 7.3:-10167551 MS.gene051364:CDS
ACCAAGATACTGTGTGGGTT+GGG 0.401401 7.3:+10168251 None:intergenic
TAACAAAGCTAGGTTTGAAC+CGG 0.430362 7.3:-10167560 MS.gene051364:CDS
TTGAATTTCTGAACATCAGC+AGG 0.432916 7.3:+10167778 None:intergenic
TGGTGGATGTTGACCATGAT+AGG 0.433516 7.3:+10168170 None:intergenic
CACAAGTTTCGCTAATAGCT+TGG 0.440991 7.3:+10167650 None:intergenic
GAACCCGAGAGAGAAGTTTC+CGG 0.448425 7.3:+10168348 None:intergenic
ACCATGATAGGGTTCTTTGT+GGG 0.450423 7.3:+10168182 None:intergenic
ACCCAACCCACACAGTATCT+TGG 0.453874 7.3:-10168252 MS.gene051364:CDS
GTGCTTACTCTTGCATAAAT+GGG 0.460763 7.3:+10167838 None:intergenic
CCAAATCCATGTGGTTCGTA+TGG 0.462161 7.3:-10167622 MS.gene051364:CDS
GGGATTCAACAAAGTCTAGT+TGG 0.465277 7.3:-10167684 MS.gene051364:CDS
TACAAGATTCTGAGAAAGGT+TGG 0.478101 7.3:-10167454 MS.gene051364:CDS
TCCGGTAGGATCGGTGAGGA+TGG 0.479284 7.3:+10168366 None:intergenic
CTTGTTTAGATAACAAAGCT+AGG 0.482136 7.3:-10167570 MS.gene051364:CDS
GACCATGATAGGGTTCTTTG+TGG 0.482393 7.3:+10168181 None:intergenic
GACCAAGATACTGTGTGGGT+TGG 0.482474 7.3:+10168250 None:intergenic
GATTGTTGCAAAAGATGTTA+AGG 0.483421 7.3:+10168462 None:intergenic
AACCACGCGCTCACCGTTGG+TGG 0.488054 7.3:+10168153 None:intergenic
TAGTTACAAGATTCTGAGAA+AGG 0.492029 7.3:-10167458 MS.gene051364:CDS
TCCATAGTGGTTCAAGGGAA+AGG 0.497589 7.3:+10168281 None:intergenic
CAAGACTACCGTTGAAGAAG+AGG 0.498874 7.3:+10168215 None:intergenic
ATCGGTGAGGATGGGTTGAA+AGG 0.499686 7.3:+10168375 None:intergenic
TGGCCGTCCATAGTGGTTCA+AGG 0.506314 7.3:+10168275 None:intergenic
TTCGTATGGTTTGTGTACCC+CGG 0.508542 7.3:-10167608 MS.gene051364:CDS
TGGTTAGGTTAGAACAAGAC+GGG 0.512333 7.3:-10167726 MS.gene051364:CDS
AAGCCTTTGAGAAGCTCTTG+TGG 0.514091 7.3:+10168427 None:intergenic
GATGATGATGGTGATGGAGG+TGG 0.514144 7.3:-10167514 MS.gene051364:CDS
GAGGATGGGTTGAAAGGAGG+TGG 0.514601 7.3:+10168381 None:intergenic
CCGGTAGGATCGGTGAGGAT+GGG 0.515364 7.3:+10168367 None:intergenic
GAAGAAGAGGCGCGTGGTGT+GGG 0.517147 7.3:+10168228 None:intergenic
TTTGAGAAGCTCTTGTGGGA+TGG 0.521091 7.3:+10168432 None:intergenic
CCATAGTGGTTCAAGGGAAA+GGG 0.521431 7.3:+10168282 None:intergenic
GACTTGTGCAGTGGAGGGAT+TGG 0.523694 7.3:-10167490 MS.gene051364:CDS
CTACCGGAAACTTCTCTCTC+GGG 0.525044 7.3:-10168351 MS.gene051364:CDS
CCTACCGGAAACTTCTCTCT+CGG 0.525872 7.3:-10168352 MS.gene051364:CDS
TCTAAAATCATAGAAGGTGA+TGG 0.528671 7.3:-10167862 MS.gene051364:intron
TTTAATGATGATGATGGTGA+TGG 0.529593 7.3:-10167520 MS.gene051364:CDS
AGGTTTGAACCGGGTGAACC+GGG 0.529961 7.3:-10167550 MS.gene051364:CDS
AACAAGACGGGAATCTCAAA+GGG 0.531757 7.3:-10167714 MS.gene051364:CDS
AGCCTTTGAGAAGCTCTTGT+GGG 0.535324 7.3:+10168428 None:intergenic
GTTGGGTTGGCCGTCCATAG+TGG 0.535752 7.3:+10168268 None:intergenic
TCGTATGGTTTGTGTACCCC+GGG 0.537638 7.3:-10167607 MS.gene051364:CDS
GAACAAGACGGGAATCTCAA+AGG 0.540237 7.3:-10167715 MS.gene051364:CDS
TGAAGAAGAGGCGCGTGGTG+TGG 0.545063 7.3:+10168227 None:intergenic
GGTGAGGATGGGTTGAAAGG+AGG 0.550449 7.3:+10168378 None:intergenic
GGTGGAGACTTGTGCAGTGG+AGG 0.550599 7.3:-10167496 MS.gene051364:CDS
AAACACCCACCCGGTTCACC+CGG 0.551323 7.3:+10167541 None:intergenic
CCCATCCTCACCGATCCTAC+CGG 0.557827 7.3:-10168367 MS.gene051364:CDS
TCCTCTAGTAACTCTTTATG+CGG 0.558201 7.3:+10167421 None:intergenic
AGAGAAGTTTCCGGTAGGAT+CGG 0.568706 7.3:+10168357 None:intergenic
TATGGTTTGTGTACCCCGGG+TGG 0.569680 7.3:-10167604 MS.gene051364:CDS
ATGGTTTGTGTACCCCGGGT+GGG 0.571622 7.3:-10167603 MS.gene051364:CDS
ATCCCACAAGAGCTTCTCAA+AGG 0.581973 7.3:-10168430 MS.gene051364:CDS
TCTAGTAACTCTTTATGCGG+TGG 0.582196 7.3:+10167424 None:intergenic
AAGGAGGTGGATGTTGAGAG+TGG 0.584748 7.3:+10168394 None:intergenic
ACCCACAAAGAACCCTATCA+TGG 0.585380 7.3:-10168183 MS.gene051364:CDS
TTGGTTAGGTTAGAACAAGA+CGG 0.585405 7.3:-10167727 MS.gene051364:CDS
TTGAACCGGGTGAACCGGGT+GGG 0.586209 7.3:-10167546 MS.gene051364:CDS
GTGGAGACTTGTGCAGTGGA+GGG 0.586292 7.3:-10167495 MS.gene051364:CDS
GTACATTCCAATATAACCCT+CGG 0.587317 7.3:+10167816 None:intergenic
AATGATGATGATGGTGATGG+AGG 0.587786 7.3:-10167517 MS.gene051364:CDS
GGTGGATGTTGACCATGATA+GGG 0.588463 7.3:+10168171 None:intergenic
GGATGTTGAGAGTGGAGATG+AGG 0.588810 7.3:+10168402 None:intergenic
TTCCCTTGAACCACTATGGA+CGG 0.592559 7.3:-10168278 MS.gene051364:CDS
GGCCGTCCATAGTGGTTCAA+GGG 0.595077 7.3:+10168276 None:intergenic
CAAGAACAACTAGACCCACC+CGG 0.597425 7.3:+10167589 None:intergenic
AGATACTGTGTGGGTTGGGT+TGG 0.597895 7.3:+10168255 None:intergenic
TTTGAACCGGGTGAACCGGG+TGG 0.602123 7.3:-10167547 MS.gene051364:CDS
ACCACGCGCCTCTTCTTCAA+CGG 0.605894 7.3:-10168223 MS.gene051364:CDS
AAGCTCTTGTGGGATGGAAG+TGG 0.612049 7.3:+10168438 None:intergenic
AAGAACAACTAGACCCACCC+GGG 0.614763 7.3:+10167590 None:intergenic
CACAAACCATACGAACCACA+TGG 0.615636 7.3:+10167616 None:intergenic
GATTCTGAGAAAGGTTGGAG+TGG 0.618823 7.3:-10167449 MS.gene051364:CDS
TATGCAAGAGTAAGCACCGA+GGG 0.634595 7.3:-10167832 MS.gene051364:CDS
AACAAAGCTAGGTTTGAACC+GGG 0.646696 7.3:-10167559 MS.gene051364:CDS
CCGAGAGAGAAGTTTCCGGT+AGG 0.665125 7.3:+10168352 None:intergenic
GTGGGACCAAGATACTGTGT+GGG 0.669264 7.3:+10168246 None:intergenic
AAGGGAAAGGGTGTGAACGA+CGG 0.672396 7.3:+10168294 None:intergenic
ACCGCATAAAGAGTTACTAG+AGG 0.673293 7.3:-10167422 MS.gene051364:CDS
TGTGGGACCAAGATACTGTG+TGG 0.677336 7.3:+10168245 None:intergenic
TCATGGTCAACATCCACCAA+CGG 0.689681 7.3:-10168166 MS.gene051364:intron
GGAGGTGGAGACTTGTGCAG+TGG 0.693599 7.3:-10167499 MS.gene051364:CDS
ACCGTTGAAGAAGAGGCGCG+TGG 0.703254 7.3:+10168222 None:intergenic
TCATCATTAAAACACCCACC+CGG 0.718915 7.3:+10167532 None:intergenic
TGTGAGCTTCCAAATCCATG+TGG 0.726162 7.3:-10167631 MS.gene051364:CDS
AGTTTCCGGTAGGATCGGTG+AGG 0.731059 7.3:+10168362 None:intergenic
AGAACAACTAGACCCACCCG+GGG 0.777454 7.3:+10167591 None:intergenic
TTATGCAAGAGTAAGCACCG+AGG 0.833555 7.3:-10167833 MS.gene051364:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACGGTTATTTTTGTTATAT+TGG - chr7.3:10168067-10168086 MS.gene051364:intron 20.0%
!! GCAAAATCTAAAATCATAGA+AGG - chr7.3:10168108-10168127 MS.gene051364:intron 25.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG - chr7.3:10168049-10168068 MS.gene051364:intron 25.0%
AATCTCTACTCTTTACGTTT+AGG - chr7.3:10167984-10168003 MS.gene051364:intron 30.0%
ACGTAAAGAGTAGAGATTAT+TGG + chr7.3:10167982-10168001 None:intergenic 30.0%
CTTGTTTAGATAACAAAGCT+AGG - chr7.3:10168406-10168425 MS.gene051364:CDS 30.0%
GAAAATCACGACAAAGAAAA+AGG - chr7.3:10168030-10168049 MS.gene051364:intron 30.0%
GATTGTTGCAAAAGATGTTA+AGG + chr7.3:10167517-10167536 None:intergenic 30.0%
TGTTTGTACTAGTAAGTTTG+AGG + chr7.3:10167859-10167878 None:intergenic 30.0%
TTGAATATTGTAGAAGCAAC+TGG + chr7.3:10167431-10167450 None:intergenic 30.0%
! TAGTTACAAGATTCTGAGAA+AGG - chr7.3:10168518-10168537 MS.gene051364:CDS 30.0%
! TCTAAAATCATAGAAGGTGA+TGG - chr7.3:10168114-10168133 MS.gene051364:intron 30.0%
!! GAATCTCAAAGGGTATTATT+GGG - chr7.3:10168272-10168291 MS.gene051364:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG - chr7.3:10168456-10168475 MS.gene051364:CDS 30.0%
AAATGGAAACTTTCCCAAAG+TGG + chr7.3:10167900-10167919 None:intergenic 35.0%
GTACATTCCAATATAACCCT+CGG + chr7.3:10168163-10168182 None:intergenic 35.0%
GTGCTTACTCTTGCATAAAT+GGG + chr7.3:10168141-10168160 None:intergenic 35.0%
TAACAAAGCTAGGTTTGAAC+CGG - chr7.3:10168416-10168435 MS.gene051364:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG + chr7.3:10168558-10168577 None:intergenic 35.0%
TTGAATTTCTGAACATCAGC+AGG + chr7.3:10168201-10168220 None:intergenic 35.0%
TTGGTTAGGTTAGAACAAGA+CGG - chr7.3:10168249-10168268 MS.gene051364:CDS 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG - chr7.3:10168230-10168249 MS.gene051364:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG - chr7.3:10168522-10168541 MS.gene051364:CDS 35.0%
!! GAAGTTTTGATCTTGTACGA+GGG + chr7.3:10167934-10167953 None:intergenic 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG - chr7.3:10168271-10168290 MS.gene051364:CDS 35.0%
!! TGAAGTTTTGATCTTGTACG+AGG + chr7.3:10167935-10167954 None:intergenic 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG - chr7.3:10168450-10168469 MS.gene051364:CDS 35.0%
!!! GTTTTATGTCGTTTTGGTTG+TGG + chr7.3:10167659-10167678 None:intergenic 35.0%
AACAAAGCTAGGTTTGAACC+GGG - chr7.3:10168417-10168436 MS.gene051364:CDS 40.0%
AACAAGACGGGAATCTCAAA+GGG - chr7.3:10168262-10168281 MS.gene051364:CDS 40.0%
ACCATGATAGGGTTCTTTGT+GGG + chr7.3:10167797-10167816 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG - chr7.3:10168554-10168573 MS.gene051364:CDS 40.0%
ACGTTTAGGTGACACTTTCA+TGG - chr7.3:10167998-10168017 MS.gene051364:intron 40.0%
CACAAGTTTCGCTAATAGCT+TGG + chr7.3:10168329-10168348 None:intergenic 40.0%
CGTTTAGGTGACACTTTCAT+GGG - chr7.3:10167999-10168018 MS.gene051364:intron 40.0%
GGGATTCAACAAAGTCTAGT+TGG - chr7.3:10168292-10168311 MS.gene051364:CDS 40.0%
GGTGCTTACTCTTGCATAAA+TGG + chr7.3:10168142-10168161 None:intergenic 40.0%
TCATCATTAAAACACCCACC+CGG + chr7.3:10168447-10168466 None:intergenic 40.0%
TCTAGTAACTCTTTATGCGG+TGG + chr7.3:10168555-10168574 None:intergenic 40.0%
TGGTTAGGTTAGAACAAGAC+GGG - chr7.3:10168250-10168269 MS.gene051364:CDS 40.0%
! AACCTCAAAAACGCCACTTT+GGG - chr7.3:10167884-10167903 MS.gene051364:intron 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG + chr7.3:10168185-10168204 None:intergenic 40.0%
!! AATGATGATGATGGTGATGG+AGG - chr7.3:10168459-10168478 MS.gene051364:CDS 40.0%
!! ATCTTGTACGAGGGTATTTG+TGG + chr7.3:10167925-10167944 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG - chr7.3:10168235-10168254 MS.gene051364:CDS 40.0%
!! TCTTGTACGAGGGTATTTGT+GGG + chr7.3:10167924-10167943 None:intergenic 40.0%
!!! CAACGGTAGTCTTGTTTTGT+GGG - chr7.3:10167770-10167789 MS.gene051364:CDS 40.0%
!!! TCAACGGTAGTCTTGTTTTG+TGG - chr7.3:10167769-10167788 MS.gene051364:CDS 40.0%
!!! TTATGTCGTTTTGGTTGTGG+CGG + chr7.3:10167656-10167675 None:intergenic 40.0%
ACCAAGATACTGTGTGGGTT+GGG + chr7.3:10167728-10167747 None:intergenic 45.0%
ACCCACAAAGAACCCTATCA+TGG - chr7.3:10167793-10167812 MS.gene051364:CDS 45.0%
AGAGAAGTTTCCGGTAGGAT+CGG + chr7.3:10167622-10167641 None:intergenic 45.0%
ATCCCACAAGAGCTTCTCAA+AGG - chr7.3:10167546-10167565 MS.gene051364:CDS 45.0%
CAACCTCAAAAACGCCACTT+TGG - chr7.3:10167883-10167902 MS.gene051364:intron 45.0%
CAAGACTACCGTTGAAGAAG+AGG + chr7.3:10167764-10167783 None:intergenic 45.0%
CACAAACCATACGAACCACA+TGG + chr7.3:10168363-10168382 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG - chr7.3:10168354-10168373 MS.gene051364:CDS 45.0%
CCATACGAACCACATGGATT+TGG + chr7.3:10168357-10168376 None:intergenic 45.0%
CCATAGTGGTTCAAGGGAAA+GGG + chr7.3:10167697-10167716 None:intergenic 45.0%
GAACAAGACGGGAATCTCAA+AGG - chr7.3:10168261-10168280 MS.gene051364:CDS 45.0%
GACCATGATAGGGTTCTTTG+TGG + chr7.3:10167798-10167817 None:intergenic 45.0%
GGTGGATGTTGACCATGATA+GGG + chr7.3:10167808-10167827 None:intergenic 45.0%
TCATGGTCAACATCCACCAA+CGG - chr7.3:10167810-10167829 MS.gene051364:CDS 45.0%
TCCATAGTGGTTCAAGGGAA+AGG + chr7.3:10167698-10167717 None:intergenic 45.0%
TGTGAGCTTCCAAATCCATG+TGG - chr7.3:10168345-10168364 MS.gene051364:CDS 45.0%
TTCCCTTGAACCACTATGGA+CGG - chr7.3:10167698-10167717 MS.gene051364:CDS 45.0%
TTTGAGAAGCTCTTGTGGGA+TGG + chr7.3:10167547-10167566 None:intergenic 45.0%
! AAGCCTTTGAGAAGCTCTTG+TGG + chr7.3:10167552-10167571 None:intergenic 45.0%
! AGCCTTTGAGAAGCTCTTGT+GGG + chr7.3:10167551-10167570 None:intergenic 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG - chr7.3:10168527-10168546 MS.gene051364:CDS 45.0%
! TGGTGGATGTTGACCATGAT+AGG + chr7.3:10167809-10167828 None:intergenic 45.0%
! TTATGCAAGAGTAAGCACCG+AGG - chr7.3:10168143-10168162 MS.gene051364:intron 45.0%
! TTCCCAAAGTGGCGTTTTTG+AGG + chr7.3:10167889-10167908 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG - chr7.3:10168368-10168387 MS.gene051364:CDS 45.0%
!! CGGCGAGTTTTATGTCGTTT+TGG + chr7.3:10167665-10167684 None:intergenic 45.0%
!! CTTGTACGAGGGTATTTGTG+GGG + chr7.3:10167923-10167942 None:intergenic 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG - chr7.3:10168153-10168172 MS.gene051364:intron 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG - chr7.3:10168144-10168163 MS.gene051364:intron 45.0%
AAGAACAACTAGACCCACCC+GGG + chr7.3:10168389-10168408 None:intergenic 50.0%
AAGCTCTTGTGGGATGGAAG+TGG + chr7.3:10167541-10167560 None:intergenic 50.0%
AAGGAGGTGGATGTTGAGAG+TGG + chr7.3:10167585-10167604 None:intergenic 50.0%
ACCCAACCCACACAGTATCT+TGG - chr7.3:10167724-10167743 MS.gene051364:CDS 50.0%
CAAGAACAACTAGACCCACC+CGG + chr7.3:10168390-10168409 None:intergenic 50.0%
CCCTTTCCCTTGAACCACTA+TGG - chr7.3:10167694-10167713 MS.gene051364:CDS 50.0%
CCTACCGGAAACTTCTCTCT+CGG - chr7.3:10167624-10167643 MS.gene051364:CDS 50.0%
CTACCGGAAACTTCTCTCTC+GGG - chr7.3:10167625-10167644 MS.gene051364:CDS 50.0%
GAACCCGAGAGAGAAGTTTC+CGG + chr7.3:10167631-10167650 None:intergenic 50.0%
GACCAAGATACTGTGTGGGT+TGG + chr7.3:10167729-10167748 None:intergenic 50.0%
GGATGTTGAGAGTGGAGATG+AGG + chr7.3:10167577-10167596 None:intergenic 50.0%
GTGGGACCAAGATACTGTGT+GGG + chr7.3:10167733-10167752 None:intergenic 50.0%
TAGGTTTGAACCGGGTGAAC+CGG - chr7.3:10168425-10168444 MS.gene051364:CDS 50.0%
TGTGGGACCAAGATACTGTG+TGG + chr7.3:10167734-10167753 None:intergenic 50.0%
! AAGGGAAAGGGTGTGAACGA+CGG + chr7.3:10167685-10167704 None:intergenic 50.0%
! TCGTATGGTTTGTGTACCCC+GGG - chr7.3:10168369-10168388 MS.gene051364:CDS 50.0%
!! AGATACTGTGTGGGTTGGGT+TGG + chr7.3:10167724-10167743 None:intergenic 50.0%
!! ATCGGTGAGGATGGGTTGAA+AGG + chr7.3:10167604-10167623 None:intergenic 50.0%
!! CGAGGGTATTTGTGGGGAAA+TGG + chr7.3:10167917-10167936 None:intergenic 50.0%
!! GATGATGATGGTGATGGAGG+TGG - chr7.3:10168462-10168481 MS.gene051364:CDS 50.0%
ACCACGCGCCTCTTCTTCAA+CGG - chr7.3:10167753-10167772 MS.gene051364:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG + chr7.3:10168388-10168407 None:intergenic 55.0%
AGGTTTGAACCGGGTGAACC+GGG - chr7.3:10168426-10168445 MS.gene051364:CDS 55.0%
AGTTTCCGGTAGGATCGGTG+AGG + chr7.3:10167617-10167636 None:intergenic 55.0%
CCGAGAGAGAAGTTTCCGGT+AGG + chr7.3:10167627-10167646 None:intergenic 55.0%
GACTTGTGCAGTGGAGGGAT+TGG - chr7.3:10168486-10168505 MS.gene051364:CDS 55.0%
GGCCGTCCATAGTGGTTCAA+GGG + chr7.3:10167703-10167722 None:intergenic 55.0%
GTGGAGACTTGTGCAGTGGA+GGG - chr7.3:10168481-10168500 MS.gene051364:CDS 55.0%
TGGCCGTCCATAGTGGTTCA+AGG + chr7.3:10167704-10167723 None:intergenic 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG - chr7.3:10168373-10168392 MS.gene051364:CDS 55.0%
! TATGGTTTGTGTACCCCGGG+TGG - chr7.3:10168372-10168391 MS.gene051364:CDS 55.0%
!! GAGGATGGGTTGAAAGGAGG+TGG + chr7.3:10167598-10167617 None:intergenic 55.0%
!! GGTGAGGATGGGTTGAAAGG+AGG + chr7.3:10167601-10167620 None:intergenic 55.0%
!!! TGTCGTTTTGGTTGTGGCGG+AGG + chr7.3:10167653-10167672 None:intergenic 55.0%
AAACACCCACCCGGTTCACC+CGG + chr7.3:10168438-10168457 None:intergenic 60.0%
AAGAACCACGCGCTCACCGT+TGG + chr7.3:10167829-10167848 None:intergenic 60.0%
CCCATCCTCACCGATCCTAC+CGG - chr7.3:10167609-10167628 MS.gene051364:CDS 60.0%
CCGGTAGGATCGGTGAGGAT+GGG + chr7.3:10167612-10167631 None:intergenic 60.0%
GGAGGTGGAGACTTGTGCAG+TGG - chr7.3:10168477-10168496 MS.gene051364:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG - chr7.3:10168480-10168499 MS.gene051364:CDS 60.0%
TCCGGTAGGATCGGTGAGGA+TGG + chr7.3:10167613-10167632 None:intergenic 60.0%
TTGAACCGGGTGAACCGGGT+GGG - chr7.3:10168430-10168449 MS.gene051364:CDS 60.0%
TTTGAACCGGGTGAACCGGG+TGG - chr7.3:10168429-10168448 MS.gene051364:CDS 60.0%
! ACCGTTGAAGAAGAGGCGCG+TGG + chr7.3:10167757-10167776 None:intergenic 60.0%
! GAAGAAGAGGCGCGTGGTGT+GGG + chr7.3:10167751-10167770 None:intergenic 60.0%
! TGAAGAAGAGGCGCGTGGTG+TGG + chr7.3:10167752-10167771 None:intergenic 60.0%
!! GTTGGGTTGGCCGTCCATAG+TGG + chr7.3:10167711-10167730 None:intergenic 60.0%
AACCACGCGCTCACCGTTGG+TGG + chr7.3:10167826-10167845 None:intergenic 65.0%
ATCCACCAACGGTGAGCGCG+TGG - chr7.3:10167821-10167840 MS.gene051364:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 10167420 10168578 10167420 ID=MS.gene051364
chr7.3 mRNA 10167420 10168578 10167420 ID=MS.gene051364.t1;Parent=MS.gene051364
chr7.3 exon 10168167 10168578 10168167 ID=MS.gene051364.t1.exon1;Parent=MS.gene051364.t1
chr7.3 CDS 10168167 10168578 10168167 ID=cds.MS.gene051364.t1;Parent=MS.gene051364.t1
chr7.3 exon 10167420 10167871 10167420 ID=MS.gene051364.t1.exon2;Parent=MS.gene051364.t1
chr7.3 CDS 10167420 10167871 10167420 ID=cds.MS.gene051364.t1;Parent=MS.gene051364.t1
Gene Sequence

>MS.gene051364

ATGTCTATCCAGTTGCTTCTACAATATTCAAACATGTATGCAACACATAAGCTTCATTTCACAAATATAATTCTCGTTCTATTCTTTTCTACTACCTTAACATCTTTTGCAACAATCACCACTTCCATCCCACAAGAGCTTCTCAAAGGCTTCTCCTCATCTCCACTCTCAACATCCACCTCCTTTCAACCCATCCTCACCGATCCTACCGGAAACTTCTCTCTCGGGTTCCTCCGCCACAACCAAAACGACATAAAACTCGCCGTCGTTCACACCCTTTCCCTTGAACCACTATGGACGGCCAACCCAACCCACACAGTATCTTGGTCCCACACCACGCGCCTCTTCTTCAACGGTAGTCTTGTTTTGTGGGACCCACAAAGAACCCTATCATGGTCAACATCCACCAACGGTGAGCGCGTGGTTCTTCTCAATACCTCAAACTTACTAGTACAAACAAAAACAACCTCAAAAACGCCACTTTGGGAAAGTTTCCATTTCCCCACAAATACCCTCGTACAAGATCAAAACTTCACTTCAAACATGTCTTTAGTATCAACCAATAATCTCTACTCTTTACGTTTAGGTGACACTTTCATGGGTTTTATACGAAAATCACGACAAAGAAAAAGGTAGTTTGTTAACAAAACGGTTATTTTTGTTATATTGGAAACGTTCTGCACTACAAGCAAAATCTAAAATCATAGAAGGTGATGGACCCATTTATGCAAGAGTAAGCACCGAGGGTTATATTGGAATGTACCAAACAAGTTCTAAACCTGCTGATGTTCAGAAATTCAACAGTTTTCAAGAAACTTCGTCGTTTCTTTTGGTTAGGTTAGAACAAGACGGGAATCTCAAAGGGTATTATTGGGATTCAACAAAGTCTAGTTGGATACTTAACTTCCAAGCTATTAGCGAAACTTGTGAGCTTCCAAATCCATGTGGTTCGTATGGTTTGTGTACCCCGGGTGGGTCTAGTTGTTCTTGTTTAGATAACAAAGCTAGGTTTGAACCGGGTGAACCGGGTGGGTGTTTTAATGATGATGATGGTGATGGAGGTGGAGACTTGTGCAGTGGAGGGATTGGCGAAGAGAATAGTTACAAGATTCTGAGAAAGGTTGGAGTGGAGCCACCGCATAAAGAGTTACTAGAGGAA

Protein sequence

>MS.gene051364.t1

MSIQLLLQYSNMYATHKLHFTNIILVLFFSTTLTSFATITTSIPQELLKGFSSSPLSTSTSFQPILTDPTGNFSLGFLRHNQNDIKLAVVHTLSLEPLWTANPTHTVSWSHTTRLFFNGSLVLWDPQRTLSWSTSTNEGDGPIYARVSTEGYIGMYQTSSKPADVQKFNSFQETSSFLLVRLEQDGNLKGYYWDSTKSSWILNFQAISETCELPNPCGSYGLCTPGGSSCSCLDNKARFEPGEPGGCFNDDDGDGGGDLCSGGIGEENSYKILRKVGVEPPHKELLEE