AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89555

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89555.t1 MTR_1g069575 95.202 396 15 1 12 403 12 407 0.0 758
MS.gene89555.t1 MTR_4g084040 41.867 332 170 6 81 395 30 355 2.22e-78 246
MS.gene89555.t1 MTR_4g084040 41.994 331 169 6 82 395 1 325 2.69e-78 245
MS.gene89555.t1 MTR_4g084040 46.352 233 121 1 163 395 31 259 1.14e-66 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89555.t1 AT5G44000 69.034 352 99 3 56 398 44 394 1.28e-180 508
MS.gene89555.t1 AT4G19880 40.058 342 182 5 70 394 20 355 2.66e-74 236
MS.gene89555.t1 AT5G45020 38.973 331 179 5 82 395 1 325 1.79e-70 225
MS.gene89555.t1 AT5G45020 38.973 331 179 5 82 395 1 325 1.79e-70 225
MS.gene89555.t1 AT5G44990 39.432 317 169 5 95 394 11 321 3.53e-69 222
MS.gene89555.t1 AT5G44990 39.432 317 169 5 95 394 11 321 3.53e-69 222
MS.gene89555.t1 AT4G19880 37.228 368 182 6 70 394 20 381 1.42e-68 222
MS.gene89555.t1 AT5G44990 42.553 235 131 1 164 398 12 242 5.12e-59 193
MS.gene89555.t1 AT4G19880 39.041 292 153 6 70 340 20 307 2.34e-56 188
MS.gene89555.t1 AT5G44990 37.546 269 140 6 95 346 11 268 4.11e-54 181

Find 133 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTATCATATGCTTCT+TGG 0.200519 1.1:+51292984 None:intergenic
TCTTTCACCACCTGAATTAA+AGG 0.217062 1.1:-51293334 MS.gene89555:CDS
TGAACCAGTATTTGTTAAAT+AGG 0.222094 1.1:-51292499 None:intergenic
TTCATTACATACAACATCTT+TGG 0.252307 1.1:+51293422 None:intergenic
TCAATCTTATCCTTTAATTC+AGG 0.265131 1.1:+51293324 None:intergenic
ATTACAAGTATCTGCAACTT+TGG 0.276080 1.1:+51292659 None:intergenic
GTTCTGTTACAAAACTTCTC+TGG 0.315841 1.1:-51293875 MS.gene89555:CDS
ATTGCCTATTTAACAAATAC+TGG 0.329847 1.1:+51292495 None:intergenic
ATTCAAACGGGTCGGTAATA+CGG 0.330260 1.1:-51293568 MS.gene89555:CDS
ATAATTCAATTGTTTAATTC+CGG 0.334525 1.1:-51293390 MS.gene89555:CDS
TAATTCAATTGTTTAATTCC+GGG 0.335485 1.1:-51293389 MS.gene89555:CDS
GAGCTGCCACGTGGAGTTCC+AGG 0.336140 1.1:+51293806 None:intergenic
TACACACCGTTGTTCACGTT+TGG 0.336302 1.1:+51293279 None:intergenic
TCTGAAGTTGAAGGCATAAT+TGG 0.346959 1.1:+51292573 None:intergenic
GACAAGGTGGTGTGAGGAAG+AGG 0.351548 1.1:+51294007 None:intergenic
ATACTCATATAACTTCTTCT+TGG 0.353135 1.1:+51292811 None:intergenic
TTGTTTAATTCCGGGTTAAA+CGG 0.357379 1.1:-51293381 MS.gene89555:CDS
TCATGTAATTAGTCCGAGTT+TGG 0.362164 1.1:-51293544 MS.gene89555:CDS
TCCCTGGATTGAGAGGAAAA+AGG 0.376331 1.1:+51292604 None:intergenic
CTGGGGTCGGTCCCTCCCAC+CGG 0.396579 1.1:-51293856 MS.gene89555:CDS
TTACAAGTATCTGCAACTTT+GGG 0.397228 1.1:+51292660 None:intergenic
TCCAGTGTCAGTTGCGTCGC+CGG 0.397459 1.1:-51293610 MS.gene89555:CDS
AGACTTTAAAAGAAGTATAT+AGG 0.397864 1.1:-51293503 MS.gene89555:CDS
TTCTGTTACAAAACTTCTCT+GGG 0.401395 1.1:-51293874 MS.gene89555:CDS
GTCTGTTTACTACTTTGATT+CGG 0.402179 1.1:-51292868 MS.gene89555:CDS
CGCCGGGAATGGATGGGTCG+TGG 0.403839 1.1:-51293593 MS.gene89555:CDS
CTACATGCGTCACATTTATC+AGG 0.404982 1.1:-51292774 MS.gene89555:intron
GTTGCGTCGCCGGGAATGGA+TGG 0.406208 1.1:-51293600 MS.gene89555:CDS
GTCAGTTGCGTCGCCGGGAA+TGG 0.413562 1.1:-51293604 MS.gene89555:CDS
TTCAAACGGGTCGGTAATAC+GGG 0.417761 1.1:-51293567 MS.gene89555:CDS
AAGATCCAACTCAGGGTTAC+GGG 0.418289 1.1:+51293353 None:intergenic
TGTTTAATTCCGGGTTAAAC+GGG 0.419709 1.1:-51293380 MS.gene89555:CDS
CGACAACCACTTTCCGCAAC+CGG 0.426378 1.1:-51293974 MS.gene89555:CDS
ATTTCATGCTCTGAAGTTGA+AGG 0.430518 1.1:+51292564 None:intergenic
GCTTCAAAATTCCGATTCTC+TGG 0.443348 1.1:-51293732 MS.gene89555:CDS
CTGGTTCAGTTGATGATGAT+AGG 0.444961 1.1:+51292514 None:intergenic
AGAACGGATGAGGGAACTTC+CGG 0.445710 1.1:+51293944 None:intergenic
CTCGCTCCCTCCGATTCCAC+TGG 0.446303 1.1:-51293771 MS.gene89555:CDS
GGAATATCCGCCAGTGGAAT+CGG 0.450544 1.1:+51293761 None:intergenic
AATTAGTCCGAGTTTGGATA+AGG 0.450978 1.1:-51293538 MS.gene89555:CDS
CTGAGAAGTGGTGGGTATGA+TGG 0.455128 1.1:-51293480 MS.gene89555:CDS
TTCTTTGCAGACCTCATGGC+AGG 0.455813 1.1:-51292542 MS.gene89555:CDS
GGTGAGCCCACGGGCATGGC+AGG 0.455919 1.1:+51293676 None:intergenic
TTCCGGTGAGTCTCCGGTTG+CGG 0.460175 1.1:+51293961 None:intergenic
TCCCACGACCCATCCATTCC+CGG 0.466688 1.1:+51293591 None:intergenic
ACGTGAACAACGGTGTGTAT+AGG 0.467210 1.1:-51293275 MS.gene89555:intron
TCACAACCGTCCGCACCGCC+TGG 0.467210 1.1:-51293824 MS.gene89555:CDS
TGTTGTCAAGGGACATAGTC+AGG 0.469351 1.1:+51293919 None:intergenic
ATCTTATCCTTTAATTCAGG+TGG 0.486788 1.1:+51293327 None:intergenic
CCCGGCGACGCAACTGACAC+TGG 0.487032 1.1:+51293609 None:intergenic
GGGAACTTCCGGTGAGTCTC+CGG 0.493773 1.1:+51293955 None:intergenic
AAAGATCCAACTCAGGGTTA+CGG 0.495880 1.1:+51293352 None:intergenic
GTATATAGGCTGAGAAGTGG+TGG 0.499430 1.1:-51293489 MS.gene89555:CDS
GTACGGTGAGCCCACGGGCA+TGG 0.499751 1.1:+51293672 None:intergenic
CGTTGGCCTGCCATGCCCGT+GGG 0.505206 1.1:-51293682 MS.gene89555:CDS
TAGTCAGGCGAGAACGGATG+AGG 0.506765 1.1:+51293934 None:intergenic
TGGTTCAGTTGATGATGATA+GGG 0.511787 1.1:+51292515 None:intergenic
TGGGTCGTGGGAATTCAAAC+GGG 0.519151 1.1:-51293580 MS.gene89555:CDS
ATGGGTCGTGGGAATTCAAA+CGG 0.519328 1.1:-51293581 MS.gene89555:CDS
CCAGTGTCAGTTGCGTCGCC+GGG 0.521031 1.1:-51293609 MS.gene89555:CDS
ACGTTGGCCTGCCATGCCCG+TGG 0.522921 1.1:-51293683 MS.gene89555:CDS
AGTCCGCGCACTCAAAGGCT+TGG 0.523773 1.1:-51293643 MS.gene89555:CDS
TAATTCCGGGTTAAACGGGT+TGG 0.524230 1.1:-51293376 MS.gene89555:CDS
CTGATAAATGTGACGCATGT+AGG 0.524638 1.1:+51292775 None:intergenic
CTCATAGTCCGCGCACTCAA+AGG 0.525005 1.1:-51293648 MS.gene89555:CDS
GCCGGGAATGGATGGGTCGT+GGG 0.525533 1.1:-51293592 MS.gene89555:CDS
TGGGGTCGGTCCCTCCCACC+GGG 0.530372 1.1:-51293855 MS.gene89555:CDS
TTCCGCAACCGGAGACTCAC+CGG 0.534590 1.1:-51293963 MS.gene89555:CDS
GAAATTCTTTGCAGACCTCA+TGG 0.534960 1.1:-51292546 MS.gene89555:CDS
TGAATTAAAGGATAAGATTG+AGG 0.535509 1.1:-51293322 MS.gene89555:CDS
TCGGTGGTGGACCAGAGAAT+CGG 0.535907 1.1:+51293721 None:intergenic
CGGTTGCGGAAAGTGGTTGT+CGG 0.536348 1.1:+51293975 None:intergenic
GACGAGAAGACCCGGTGGGA+GGG 0.537088 1.1:+51293845 None:intergenic
AAGAGGAATTGTTGTTGTCA+AGG 0.537371 1.1:+51293907 None:intergenic
TTGTACACTAGATGAGTTGG+AGG 0.544163 1.1:-51292948 MS.gene89555:CDS
GGGACATAGTCAGGCGAGAA+CGG 0.547841 1.1:+51293928 None:intergenic
TCAAATTCTCGCTATTTGTG+TGG 0.552267 1.1:-51292917 MS.gene89555:CDS
TTGCGTCGCCGGGAATGGAT+GGG 0.554498 1.1:-51293599 MS.gene89555:CDS
GAGTCTCCGGTTGCGGAAAG+TGG 0.555872 1.1:+51293968 None:intergenic
AACAGAACTTAGTAGGGAAG+AGG 0.556724 1.1:+51293890 None:intergenic
AGAGGAATTGTTGTTGTCAA+GGG 0.560702 1.1:+51293908 None:intergenic
CTTCCAAGCCTTTGAGTGCG+CGG 0.563636 1.1:+51293640 None:intergenic
ACGGGCCAACCCGTTTAACC+CGG 0.566457 1.1:+51293371 None:intergenic
TTACAAAACTTCTCTGGGGT+CGG 0.567115 1.1:-51293869 MS.gene89555:CDS
AGGTGGAGACCACTCGGTGG+TGG 0.569761 1.1:+51293708 None:intergenic
TATATAGGCTGAGAAGTGGT+GGG 0.570077 1.1:-51293488 MS.gene89555:CDS
GGAGTTCCAGGCGGTGCGGA+CGG 0.570604 1.1:+51293818 None:intergenic
GTTGGCCCGTAACCCTGAGT+TGG 0.571773 1.1:-51293358 MS.gene89555:CDS
GAGTCTTTGTTCCACAACAT+TGG 0.572372 1.1:+51293444 None:intergenic
CTAATGCTCCCTGGATTGAG+AGG 0.577711 1.1:+51292597 None:intergenic
ATGAGAGTACGGTGAGCCCA+CGG 0.579375 1.1:+51293666 None:intergenic
GCTCCCTCCGATTCCACTGG+CGG 0.582754 1.1:-51293768 MS.gene89555:CDS
CCATTCGCCTTATCCAAACT+CGG 0.588222 1.1:+51293531 None:intergenic
CCGAGTTTGGATAAGGCGAA+TGG 0.588244 1.1:-51293531 MS.gene89555:CDS
GATCCACTGTGCCAATGTTG+TGG 0.590586 1.1:-51293455 MS.gene89555:CDS
GGTGGTGAAAGATCCAACTC+AGG 0.593310 1.1:+51293345 None:intergenic
CGACGCAACTGACACTGGAA+CGG 0.595413 1.1:+51293614 None:intergenic
TGAGAGTACGGTGAGCCCAC+GGG 0.597158 1.1:+51293667 None:intergenic
GAAGTATATAGGCTGAGAAG+TGG 0.600922 1.1:-51293492 MS.gene89555:CDS
ATAATTGGTCTAATGCTCCC+TGG 0.605043 1.1:+51292588 None:intergenic
ACGGTTGTGACGAGAAGACC+CGG 0.609002 1.1:+51293837 None:intergenic
ACGTAGAGGTGGAGACCACT+CGG 0.613297 1.1:+51293702 None:intergenic
ACGCATGTAGGCATGTAGAT+TGG 0.613504 1.1:+51292787 None:intergenic
ATGGCAGGCCAACGTAGAGG+TGG 0.617427 1.1:+51293691 None:intergenic
TAAAGGATAAGATTGAGGAA+TGG 0.619218 1.1:-51293317 MS.gene89555:CDS
TGACGAGAAGACCCGGTGGG+AGG 0.619484 1.1:+51293844 None:intergenic
ACAAGGTGGTGTGAGGAAGA+GGG 0.626050 1.1:+51294008 None:intergenic
GTGCGCGGACTATGAGAGTA+CGG 0.628813 1.1:+51293655 None:intergenic
TCTTTGCAGACCTCATGGCA+GGG 0.630240 1.1:-51292541 MS.gene89555:CDS
ATATCCGCCAGTGGAATCGG+AGG 0.630429 1.1:+51293764 None:intergenic
AGTCAGGCGAGAACGGATGA+GGG 0.643628 1.1:+51293935 None:intergenic
GGCATGGCAGGCCAACGTAG+AGG 0.643969 1.1:+51293688 None:intergenic
TTCTCTGGTCCACCACCGAG+TGG 0.644068 1.1:-51293717 MS.gene89555:CDS
TTGCGGAAAGTGGTTGTCGG+AGG 0.645779 1.1:+51293978 None:intergenic
AATGACGACAAGGTGGTGTG+AGG 0.649943 1.1:+51294001 None:intergenic
TCGTGGGAATTCAAACGGGT+CGG 0.657856 1.1:-51293576 MS.gene89555:CDS
GTTCCACAACATTGGCACAG+TGG 0.661542 1.1:+51293452 None:intergenic
GTGGTGAAAGATCCAACTCA+GGG 0.663800 1.1:+51293346 None:intergenic
TATCCGCCAGTGGAATCGGA+GGG 0.673969 1.1:+51293765 None:intergenic
TTGTCGGAGGAATGACGACA+AGG 0.674643 1.1:+51293991 None:intergenic
ACGTGGAGTTCCAGGCGGTG+CGG 0.675896 1.1:+51293814 None:intergenic
AGTGGTCTCCACCTCTACGT+TGG 0.677828 1.1:-51293699 MS.gene89555:CDS
AGACATCATGAGCTGCCACG+TGG 0.697920 1.1:+51293797 None:intergenic
GATAGGGATTCCCTGCCATG+AGG 0.701385 1.1:+51292531 None:intergenic
CTGCCACGTGGAGTTCCAGG+CGG 0.705558 1.1:+51293809 None:intergenic
ATATATCCAAACGTGAACAA+CGG 0.707057 1.1:-51293285 MS.gene89555:CDS
TTGTGACGAGAAGACCCGGT+GGG 0.717453 1.1:+51293841 None:intergenic
TCTGTTACAAAACTTCTCTG+GGG 0.722297 1.1:-51293873 MS.gene89555:CDS
GGGTCTGGAATATCCGCCAG+TGG 0.722668 1.1:+51293755 None:intergenic
TCGGAGGAATGACGACAAGG+TGG 0.725756 1.1:+51293994 None:intergenic
GCACCGCCTGGAACTCCACG+TGG 0.732654 1.1:-51293812 MS.gene89555:CDS
GTTGTGACGAGAAGACCCGG+TGG 0.740905 1.1:+51293840 None:intergenic
TAGAGGTGGAGACCACTCGG+TGG 0.771659 1.1:+51293705 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATTGTTTAATTC+CGG - chr1.1:51293139-51293158 MS.gene89555:intron 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1.1:51293886-51293905 MS.gene89555:CDS 15.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1.1:51293140-51293159 MS.gene89555:intron 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1.1:51293890-51293909 MS.gene89555:CDS 20.0%
!!! AGACTTTAAAAGAAGTATAT+AGG - chr1.1:51293026-51293045 MS.gene89555:intron 20.0%
! ATACTCATATAACTTCTTCT+TGG + chr1.1:51293721-51293740 None:intergenic 25.0%
! TCAATCTTATCCTTTAATTC+AGG + chr1.1:51293208-51293227 None:intergenic 25.0%
! TGAATTAAAGGATAAGATTG+AGG - chr1.1:51293207-51293226 MS.gene89555:intron 25.0%
! TTCATTACATACAACATCTT+TGG + chr1.1:51293110-51293129 None:intergenic 25.0%
!! TTTTGTAACAGAACTTAGTA+GGG + chr1.1:51292648-51292667 None:intergenic 25.0%
ATATATCCAAACGTGAACAA+CGG - chr1.1:51293244-51293263 MS.gene89555:intron 30.0%
ATCTTATCCTTTAATTCAGG+TGG + chr1.1:51293205-51293224 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1.1:51293873-51293892 None:intergenic 30.0%
CAATGAGTTTGAGAAAATCA+CGG - chr1.1:51293306-51293325 MS.gene89555:CDS 30.0%
GCTTTGCTCAAAAAATGTTT+AGG - chr1.1:51293783-51293802 MS.gene89555:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1.1:51293661-51293680 MS.gene89555:CDS 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1.1:51293212-51293231 MS.gene89555:intron 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1.1:51293872-51293891 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1.1:51292655-51292674 MS.gene89555:CDS 30.0%
TTGTTTAATTCCGGGTTAAA+CGG - chr1.1:51293148-51293167 MS.gene89555:intron 30.0%
! GTTTTGTAACAGAACTTAGT+AGG + chr1.1:51292649-51292668 None:intergenic 30.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1.1:51292991-51293010 MS.gene89555:CDS 35.0%
ATATTATGTGTTTCCTGCCT+TGG - chr1.1:51293839-51293858 MS.gene89555:CDS 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1.1:51292654-51292673 MS.gene89555:CDS 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1.1:51293612-51293631 MS.gene89555:CDS 35.0%
TCATGTAATTAGTCCGAGTT+TGG - chr1.1:51292985-51293004 MS.gene89555:CDS 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1.1:51292656-51292675 MS.gene89555:CDS 35.0%
TCTTTCACCACCTGAATTAA+AGG - chr1.1:51293195-51293214 MS.gene89555:intron 35.0%
TGAATTGCAATTTGCATTGC+AGG - chr1.1:51293505-51293524 MS.gene89555:CDS 35.0%
TGTTTAATTCCGGGTTAAAC+GGG - chr1.1:51293149-51293168 MS.gene89555:intron 35.0%
! AAGAGGAATTGTTGTTGTCA+AGG + chr1.1:51292625-51292644 None:intergenic 35.0%
! AGAGGAATTGTTGTTGTCAA+GGG + chr1.1:51292624-51292643 None:intergenic 35.0%
! GTTTTGTACACTAGATGAGT+TGG - chr1.1:51293578-51293597 MS.gene89555:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1.1:51293959-51293978 None:intergenic 35.0%
!! AGAGAATCGGAATTTTGAAG+CGG + chr1.1:51292798-51292817 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1.1:51293968-51293987 None:intergenic 35.0%
!! CTGAAGAAGTATTCAAAGTG+AGG + chr1.1:51293441-51293460 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1.1:51294017-51294036 None:intergenic 35.0%
AAAGATCCAACTCAGGGTTA+CGG + chr1.1:51293180-51293199 None:intergenic 40.0%
AACAGAACTTAGTAGGGAAG+AGG + chr1.1:51292642-51292661 None:intergenic 40.0%
ATTCAAACGGGTCGGTAATA+CGG - chr1.1:51292961-51292980 MS.gene89555:CDS 40.0%
CTACATGCGTCACATTTATC+AGG - chr1.1:51293755-51293774 MS.gene89555:CDS 40.0%
CTGATAAATGTGACGCATGT+AGG + chr1.1:51293757-51293776 None:intergenic 40.0%
CTGCTCTATCATATGCTTCT+TGG + chr1.1:51293548-51293567 None:intergenic 40.0%
GAAATTCTTTGCAGACCTCA+TGG - chr1.1:51293983-51294002 MS.gene89555:CDS 40.0%
GAAGTATATAGGCTGAGAAG+TGG - chr1.1:51293037-51293056 MS.gene89555:intron 40.0%
GAGTCTTTGTTCCACAACAT+TGG + chr1.1:51293088-51293107 None:intergenic 40.0%
GCTTCAAAATTCCGATTCTC+TGG - chr1.1:51292797-51292816 MS.gene89555:CDS 40.0%
TATATAGGCTGAGAAGTGGT+GGG - chr1.1:51293041-51293060 MS.gene89555:intron 40.0%
TATCATTGTAGCGCAAGTCA+TGG - chr1.1:51293355-51293374 MS.gene89555:CDS 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1.1:51293944-51293963 None:intergenic 40.0%
! GAAAATCACGGTGACACTTT+TGG - chr1.1:51293318-51293337 MS.gene89555:CDS 40.0%
! TTGTACACTAGATGAGTTGG+AGG - chr1.1:51293581-51293600 MS.gene89555:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1.1:51294018-51294037 None:intergenic 40.0%
!! TTACAAAACTTCTCTGGGGT+CGG - chr1.1:51292660-51292679 MS.gene89555:CDS 40.0%
!!! GAGAATCGGAATTTTGAAGC+GGG + chr1.1:51292797-51292816 None:intergenic 40.0%
AAGATCCAACTCAGGGTTAC+GGG + chr1.1:51293179-51293198 None:intergenic 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1.1:51293745-51293764 None:intergenic 45.0%
ACGTGAACAACGGTGTGTAT+AGG - chr1.1:51293254-51293273 MS.gene89555:intron 45.0%
ATGGGTCGTGGGAATTCAAA+CGG - chr1.1:51292948-51292967 MS.gene89555:CDS 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1.1:51293001-51293020 None:intergenic 45.0%
CCCTGGATTGAGAGGAAAAA+GGG + chr1.1:51293927-51293946 None:intergenic 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1.1:51293511-51293530 MS.gene89555:CDS 45.0%
GTATATAGGCTGAGAAGTGG+TGG - chr1.1:51293040-51293059 MS.gene89555:intron 45.0%
GTGGTGAAAGATCCAACTCA+GGG + chr1.1:51293186-51293205 None:intergenic 45.0%
TAATTCCGGGTTAAACGGGT+TGG - chr1.1:51293153-51293172 MS.gene89555:intron 45.0%
TACACACCGTTGTTCACGTT+TGG + chr1.1:51293253-51293272 None:intergenic 45.0%
TCCCTGGATTGAGAGGAAAA+AGG + chr1.1:51293928-51293947 None:intergenic 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1.1:51293510-51293529 MS.gene89555:CDS 45.0%
TGTTGTCAAGGGACATAGTC+AGG + chr1.1:51292613-51292632 None:intergenic 45.0%
TTCAAACGGGTCGGTAATAC+GGG - chr1.1:51292962-51292981 MS.gene89555:CDS 45.0%
! ACCCTTTTTCCTCTCAATCC+AGG - chr1.1:51293923-51293942 MS.gene89555:CDS 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1.1:51293859-51293878 None:intergenic 45.0%
! CCCTTTTTCCTCTCAATCCA+GGG - chr1.1:51293924-51293943 MS.gene89555:CDS 45.0%
AATGACGACAAGGTGGTGTG+AGG + chr1.1:51292531-51292550 None:intergenic 50.0%
ACAAGGTGGTGTGAGGAAGA+GGG + chr1.1:51292524-51292543 None:intergenic 50.0%
AGAACGGATGAGGGAACTTC+CGG + chr1.1:51292588-51292607 None:intergenic 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1.1:51292998-51293017 MS.gene89555:CDS 50.0%
CTAATGCTCCCTGGATTGAG+AGG + chr1.1:51293935-51293954 None:intergenic 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1.1:51293074-51293093 MS.gene89555:intron 50.0%
GGAATATCCGCCAGTGGAAT+CGG + chr1.1:51292771-51292790 None:intergenic 50.0%
GGTGGTGAAAGATCCAACTC+AGG + chr1.1:51293187-51293206 None:intergenic 50.0%
GTTCCACAACATTGGCACAG+TGG + chr1.1:51293080-51293099 None:intergenic 50.0%
TCGTGGGAATTCAAACGGGT+CGG - chr1.1:51292953-51292972 MS.gene89555:CDS 50.0%
TCTTTGCAGACCTCATGGCA+GGG - chr1.1:51293988-51294007 MS.gene89555:CDS 50.0%
TGGGTCGTGGGAATTCAAAC+GGG - chr1.1:51292949-51292968 MS.gene89555:CDS 50.0%
TTCTTTGCAGACCTCATGGC+AGG - chr1.1:51293987-51294006 MS.gene89555:CDS 50.0%
TTGTCGGAGGAATGACGACA+AGG + chr1.1:51292541-51292560 None:intergenic 50.0%
TTTGGGAATCTGTCCAAGGC+AGG + chr1.1:51293855-51293874 None:intergenic 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1.1:51293049-51293068 MS.gene89555:intron 50.0%
!!! TCGGAATTTTGAAGCGGGTC+TGG + chr1.1:51292792-51292811 None:intergenic 50.0%
ACGGTTGTGACGAGAAGACC+CGG + chr1.1:51292695-51292714 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1.1:51292830-51292849 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1.1:51292735-51292754 None:intergenic 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1.1:51292597-51292616 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1.1:51292830-51292849 MS.gene89555:CDS 55.0%
ATATCCGCCAGTGGAATCGG+AGG + chr1.1:51292768-51292787 None:intergenic 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1.1:51292555-51292574 MS.gene89555:CDS 55.0%
CGACGCAACTGACACTGGAA+CGG + chr1.1:51292918-51292937 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1.1:51292557-51292576 None:intergenic 55.0%
CTCATAGTCCGCGCACTCAA+AGG - chr1.1:51292881-51292900 MS.gene89555:CDS 55.0%
CTTCCAAGCCTTTGAGTGCG+CGG + chr1.1:51292892-51292911 None:intergenic 55.0%
GACAAGGTGGTGTGAGGAAG+AGG + chr1.1:51292525-51292544 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1.1:51294001-51294020 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1.1:51292604-51292623 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1.1:51292598-51292617 None:intergenic 55.0%
TATCCGCCAGTGGAATCGGA+GGG + chr1.1:51292767-51292786 None:intergenic 55.0%
TCGGAGGAATGACGACAAGG+TGG + chr1.1:51292538-51292557 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1.1:51292554-51292573 None:intergenic 55.0%
TTGTGACGAGAAGACCCGGT+GGG + chr1.1:51292691-51292710 None:intergenic 55.0%
! ATGAGAGTACGGTGAGCCCA+CGG + chr1.1:51292866-51292885 None:intergenic 55.0%
! GTGCGCGGACTATGAGAGTA+CGG + chr1.1:51292877-51292896 None:intergenic 55.0%
!! TCGGTGGTGGACCAGAGAAT+CGG + chr1.1:51292811-51292830 None:intergenic 55.0%
ACGGGCCAACCCGTTTAACC+CGG + chr1.1:51293161-51293180 None:intergenic 60.0%
AGTCCGCGCACTCAAAGGCT+TGG - chr1.1:51292886-51292905 MS.gene89555:CDS 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1.1:51292841-51292860 None:intergenic 60.0%
GAGTCTCCGGTTGCGGAAAG+TGG + chr1.1:51292564-51292583 None:intergenic 60.0%
GGGAACTTCCGGTGAGTCTC+CGG + chr1.1:51292577-51292596 None:intergenic 60.0%
GTTGGCCCGTAACCCTGAGT+TGG - chr1.1:51293171-51293190 MS.gene89555:intron 60.0%
GTTGTGACGAGAAGACCCGG+TGG + chr1.1:51292692-51292711 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+TGG + chr1.1:51292827-51292846 None:intergenic 60.0%
TCCAGTGTCAGTTGCGTCGC+CGG - chr1.1:51292919-51292938 MS.gene89555:CDS 60.0%
TCCCACGACCCATCCATTCC+CGG + chr1.1:51292941-51292960 None:intergenic 60.0%
TTCCGCAACCGGAGACTCAC+CGG - chr1.1:51292566-51292585 MS.gene89555:CDS 60.0%
TTCCGGTGAGTCTCCGGTTG+CGG + chr1.1:51292571-51292590 None:intergenic 60.0%
TTCTCTGGTCCACCACCGAG+TGG - chr1.1:51292812-51292831 MS.gene89555:CDS 60.0%
TTGCGTCGCCGGGAATGGAT+GGG - chr1.1:51292930-51292949 MS.gene89555:CDS 60.0%
! GGGTCTGGAATATCCGCCAG+TGG + chr1.1:51292777-51292796 None:intergenic 60.0%
! TGAGAGTACGGTGAGCCCAC+GGG + chr1.1:51292865-51292884 None:intergenic 60.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1.1:51292718-51292737 None:intergenic 65.0%
CCAGTGTCAGTTGCGTCGCC+GGG - chr1.1:51292920-51292939 MS.gene89555:CDS 65.0%
CTCGCTCCCTCCGATTCCAC+TGG - chr1.1:51292758-51292777 MS.gene89555:intron 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1.1:51292723-51292742 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1.1:51292687-51292706 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1.1:51292726-51292745 None:intergenic 65.0%
GCCGGGAATGGATGGGTCGT+GGG - chr1.1:51292937-51292956 MS.gene89555:CDS 65.0%
GCTCCCTCCGATTCCACTGG+CGG - chr1.1:51292761-51292780 MS.gene89555:intron 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1.1:51292844-51292863 None:intergenic 65.0%
GTCAGTTGCGTCGCCGGGAA+TGG - chr1.1:51292925-51292944 MS.gene89555:CDS 65.0%
GTTGCGTCGCCGGGAATGGA+TGG - chr1.1:51292929-51292948 MS.gene89555:CDS 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1.1:51292688-51292707 None:intergenic 65.0%
! AGGTGGAGACCACTCGGTGG+TGG + chr1.1:51292824-51292843 None:intergenic 65.0%
CCCGGCGACGCAACTGACAC+TGG + chr1.1:51292923-51292942 None:intergenic 70.0%
CGCCGGGAATGGATGGGTCG+TGG - chr1.1:51292936-51292955 MS.gene89555:CDS 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1.1:51292717-51292736 MS.gene89555:intron 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1.1:51292714-51292733 None:intergenic 70.0%
GTACGGTGAGCCCACGGGCA+TGG + chr1.1:51292860-51292879 None:intergenic 70.0%
TCACAACCGTCCGCACCGCC+TGG - chr1.1:51292705-51292724 MS.gene89555:intron 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1.1:51292846-51292865 MS.gene89555:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1.1:51292847-51292866 MS.gene89555:CDS 70.0%
CTGGGGTCGGTCCCTCCCAC+CGG - chr1.1:51292673-51292692 MS.gene89555:intron 75.0%
GGTGAGCCCACGGGCATGGC+AGG + chr1.1:51292856-51292875 None:intergenic 75.0%
TGGGGTCGGTCCCTCCCACC+GGG - chr1.1:51292674-51292693 MS.gene89555:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 51292500 51294051 51292500 ID=MS.gene89555
chr1.1 mRNA 51292500 51294051 51292500 ID=MS.gene89555.t1;Parent=MS.gene89555
chr1.1 exon 51293276 51294051 51293276 ID=MS.gene89555.t1.exon1;Parent=MS.gene89555.t1
chr1.1 CDS 51293276 51294051 51293276 ID=cds.MS.gene89555.t1;Parent=MS.gene89555.t1
chr1.1 exon 51292775 51293024 51292775 ID=MS.gene89555.t1.exon2;Parent=MS.gene89555.t1
chr1.1 CDS 51292775 51293024 51292775 ID=cds.MS.gene89555.t1;Parent=MS.gene89555.t1
chr1.1 exon 51292500 51292685 51292500 ID=MS.gene89555.t1.exon3;Parent=MS.gene89555.t1
chr1.1 CDS 51292500 51292685 51292500 ID=cds.MS.gene89555.t1;Parent=MS.gene89555.t1
Gene Sequence

>MS.gene89555

ATGTCGATGTTGTGCGCTTCTCCCTCTTCCTCACACCACCTTGTCGTCATTCCTCCGACAACCACTTTCCGCAACCGGAGACTCACCGGAAGTTCCCTCATCCGTTCTCGCCTGACTATGTCCCTTGACAACAACAATTCCTCTTCCCTACTAAGTTCTGTTACAAAACTTCTCTGGGGTCGGTCCCTCCCACCGGGTCTTCTCGTCACAACCGTCCGCACCGCCTGGAACTCCACGTGGCAGCTCATGATGTCTCAGCTCGCTCCCTCCGATTCCACTGGCGGATATTCCAGACCCGCTTCAAAATTCCGATTCTCTGGTCCACCACCGAGTGGTCTCCACCTCTACGTTGGCCTGCCATGCCCGTGGGCTCACCGTACTCTCATAGTCCGCGCACTCAAAGGCTTGGAAGATGCCGTTCCAGTGTCAGTTGCGTCGCCGGGAATGGATGGGTCGTGGGAATTCAAACGGGTCGGTAATACGGGTCATGTAATTAGTCCGAGTTTGGATAAGGCGAATGGTTGCAAGACTTTAAAAGAAGTATATAGGCTGAGAAGTGGTGGGTATGATGGAAGATCCACTGTGCCAATGTTGTGGAACAAAGACTCCAAAGATGTTGTATGTAATGAAAGCTATGACATAATTCAATTGTTTAATTCCGGGTTAAACGGGTTGGCCCGTAACCCTGAGTTGGATCTTTCACCACCTGAATTAAAGGATAAGATTGAGGAATGGTATCAAGTGATATATCCAAACGTGAACAACGGTGTGTATAGGTAAGAAATGCAGTGCAACTTCTGTAATCACAATGAGTTTGAGAAAATCACGGTGACACTTTTGGTTTTGTTCAACGCATATCATTGTAGCGCAAGTCATGGTGATTTTGTTTAACTCAGCGTGATTTCAAACATGCTCGAATATTTTCAGCAGCAGTTAGACCTCACTTTGAATACTTCTTCAGAGTACACATTCATCATTAATTTTGCTTCGTTCATCGTTGATTATTGAATTGCAATTTGCATTGCAGGTGTGGGTTTGCGCAGAGCCAAGAAGCATATGATAGAGCAGTGAATGAGTTGTTTTGTACACTAGATGAGTTGGAGGATCATTTGTCAAATTCTCGCTATTTGTGTGGAGACACGCTCACACTTGTTGATATATGTCTGTTTACTACTTTGATTCGGTTTGATATTGCTTATAATGTTCTGTTTAAATGCACCAAGAAGAAGTTATATGAGTATACCAATCTACATGCCTACATGCGTCACATTTATCAGGTGCTTGCTTTGCTCAAAAAATGTTTAGGTTTATCTATCATTTGTGTTGTTTGTCTACTAACATATTATGTGTTTCCTGCCTTGGACAGATTCCCAAAGTTGCAGATACTTGTAATTTTCAAGAAATTATGGATGGTTACTACAAAACCCTTTTTCCTCTCAATCCAGGGAGCATTAGACCAATTATGCCTTCAACTTCAGAGCATGAAATTCTTTGCAGACCTCATGGCAGGGAATCCCTATCATCATCAACTGAACCAGTATTTGTTAAATAG
Protein sequence

>MS.gene89555.t1

MSMLCASPSSSHHLVVIPPTTTFRNRRLTGSSLIRSRLTMSLDNNNSSSLLSSVTKLLWGRSLPPGLLVTTVRTAWNSTWQLMMSQLAPSDSTGGYSRPASKFRFSGPPPSGLHLYVGLPCPWAHRTLIVRALKGLEDAVPVSVASPGMDGSWEFKRVGNTGHVISPSLDKANGCKTLKEVYRLRSGGYDGRSTVPMLWNKDSKDVVCNESYDIIQLFNSGLNGLARNPELDLSPPELKDKIEEWYQVIYPNVNNGVYRCGFAQSQEAYDRAVNELFCTLDELEDHLSNSRYLCGDTLTLVDICLFTTLIRFDIAYNVLFKCTKKKLYEYTNLHAYMRHIYQIPKVADTCNFQEIMDGYYKTLFPLNPGSIRPIMPSTSEHEILCRPHGRESLSSSTEPVFVK