Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89676.t1 | XP_024629212.1 | 97.2 | 1018 | 29 | 0 | 1 | 1018 | 1 | 1018 | 0.00E+00 | 2014.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89676.t1 | C0HJB3 | 78.0 | 987 | 209 | 3 | 33 | 1018 | 2 | 981 | 0.0e+00 | 1582.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89676.t1 | G7LB83 | 97.2 | 1018 | 29 | 0 | 1 | 1018 | 1 | 1018 | 0.0e+00 | 2014.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89676 | MS.gene065392 | PPI |
| MS.gene73391 | MS.gene89676 | PPI |
| MS.gene89676 | MS.gene024279 | PPI |
| MS.gene033714 | MS.gene89676 | PPI |
| MS.gene033712 | MS.gene89676 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89676.t1 | MTR_8g075330 | 97.151 | 1018 | 29 | 0 | 1 | 1018 | 1 | 1018 | 0.0 | 2068 |
| MS.gene89676.t1 | MTR_7g084030 | 60.336 | 1011 | 386 | 8 | 13 | 1018 | 51 | 1051 | 0.0 | 1262 |
| MS.gene89676.t1 | MTR_7g084040 | 58.893 | 1012 | 397 | 5 | 15 | 1018 | 7 | 1007 | 0.0 | 1251 |
| MS.gene89676.t1 | MTR_3g098650 | 60.661 | 999 | 375 | 9 | 29 | 1018 | 25 | 1014 | 0.0 | 1247 |
| MS.gene89676.t1 | MTR_7g084030 | 61.586 | 807 | 305 | 3 | 13 | 818 | 6 | 808 | 0.0 | 1052 |
| MS.gene89676.t1 | MTR_6g008850 | 29.186 | 860 | 491 | 28 | 44 | 827 | 138 | 955 | 7.21e-89 | 309 |
| MS.gene89676.t1 | MTR_4g071680 | 28.023 | 860 | 488 | 30 | 44 | 827 | 138 | 942 | 3.27e-77 | 276 |
| MS.gene89676.t1 | MTR_3g013720 | 67.347 | 49 | 16 | 0 | 56 | 104 | 11 | 59 | 2.38e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89676.t1 | AT5G66150 | 66.468 | 1008 | 314 | 4 | 30 | 1018 | 32 | 1034 | 0.0 | 1389 |
| MS.gene89676.t1 | AT5G66150 | 66.402 | 1009 | 314 | 5 | 30 | 1018 | 32 | 1035 | 0.0 | 1385 |
| MS.gene89676.t1 | AT3G26720 | 59.663 | 1009 | 393 | 6 | 12 | 1018 | 7 | 1003 | 0.0 | 1249 |
| MS.gene89676.t1 | AT5G13980 | 58.713 | 1010 | 397 | 7 | 14 | 1013 | 6 | 1005 | 0.0 | 1203 |
| MS.gene89676.t1 | AT5G13980 | 58.713 | 1010 | 397 | 7 | 14 | 1013 | 6 | 1005 | 0.0 | 1203 |
| MS.gene89676.t1 | AT3G26720 | 59.539 | 954 | 376 | 4 | 12 | 965 | 7 | 950 | 0.0 | 1187 |
| MS.gene89676.t1 | AT3G26720 | 59.958 | 944 | 368 | 4 | 12 | 955 | 7 | 940 | 0.0 | 1184 |
| MS.gene89676.t1 | AT3G26720 | 59.870 | 922 | 360 | 4 | 12 | 933 | 7 | 918 | 0.0 | 1156 |
| MS.gene89676.t1 | AT3G26720 | 59.870 | 922 | 360 | 4 | 12 | 933 | 7 | 918 | 0.0 | 1155 |
| MS.gene89676.t1 | AT5G13980 | 59.395 | 926 | 360 | 5 | 14 | 933 | 6 | 921 | 0.0 | 1130 |
| MS.gene89676.t1 | AT5G66150 | 63.405 | 746 | 248 | 5 | 293 | 1018 | 1 | 741 | 0.0 | 961 |
| MS.gene89676.t1 | AT5G14950 | 29.350 | 862 | 494 | 28 | 42 | 827 | 150 | 972 | 2.84e-89 | 311 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTTGTTCTTGTGTTTC+TGG | 0.042893 | 8.3:+28240451 | None:intergenic |
| ATTATATGTAAAGGCCTATT+TGG | 0.105844 | 8.3:-28236050 | MS.gene89676:CDS |
| TGGTGACTTTGTTCCCTTAC+AGG | 0.122764 | 8.3:-28238279 | MS.gene89676:intron |
| AATCCTAACATATCGCTTTA+AGG | 0.146965 | 8.3:+28237292 | None:intergenic |
| TGAAATAGAAGCCAATATTT+TGG | 0.159463 | 8.3:+28236007 | None:intergenic |
| AGAAATCACTTGAAGTTATT+TGG | 0.183366 | 8.3:-28238397 | MS.gene89676:CDS |
| AATTTACTCACCAGTCTTAT+TGG | 0.190851 | 8.3:-28233770 | MS.gene89676:CDS |
| ATGATTGACCAAACAACTTT+AGG | 0.232196 | 8.3:-28239884 | MS.gene89676:CDS |
| CTAAAGTAGCTTTGCTGAAT+TGG | 0.234744 | 8.3:+28235599 | None:intergenic |
| GATTCTAAGTGGATACTATT+TGG | 0.237266 | 8.3:-28237273 | MS.gene89676:intron |
| TTCATCAGAAGTTTAATTCT+TGG | 0.244314 | 8.3:-28235150 | MS.gene89676:CDS |
| TTAGGAGGCAAGCTGTAATT+TGG | 0.255269 | 8.3:+28233584 | None:intergenic |
| TTGATCAGAAAGCAGAAAAT+TGG | 0.263725 | 8.3:-28233643 | MS.gene89676:intron |
| CTTCTCTTGATTTGTTACTA+TGG | 0.271293 | 8.3:-28241032 | MS.gene89676:CDS |
| AAAGCTACTTACTCCAGTTT+TGG | 0.288506 | 8.3:+28235714 | None:intergenic |
| AATGACATCTTTAAATTTCC+CGG | 0.289249 | 8.3:+28235775 | None:intergenic |
| ACCGGGGCTGGTATTGTTAA+AGG | 0.290654 | 8.3:-28240978 | MS.gene89676:CDS |
| GGTTGGCAGATTGATCCTTT+TGG | 0.295379 | 8.3:-28239818 | MS.gene89676:CDS |
| ATTGATCCACTATGTTAATA+AGG | 0.300775 | 8.3:-28237724 | MS.gene89676:intron |
| GTTTCCACTTGATAGGTATA+AGG | 0.307766 | 8.3:-28235855 | MS.gene89676:intron |
| TCTCAAGTTCCTGACCTTAG+AGG | 0.308074 | 8.3:+28236979 | None:intergenic |
| TGATTGACCAAACAACTTTA+GGG | 0.316065 | 8.3:-28239883 | MS.gene89676:CDS |
| CACGAGGGGTTGTATTAAAT+TGG | 0.322682 | 8.3:+28239843 | None:intergenic |
| CAAAACAAGCCCCAAAATAT+TGG | 0.322873 | 8.3:-28236018 | MS.gene89676:CDS |
| TCGACTTTAGATGATACTTT+TGG | 0.328452 | 8.3:-28237103 | MS.gene89676:CDS |
| GCAAACACAAACTTTCTGTT+TGG | 0.329089 | 8.3:+28240693 | None:intergenic |
| CAATTCAGCAAAGCTACTTT+AGG | 0.330227 | 8.3:-28235598 | MS.gene89676:CDS |
| AGCAGTTGTTAGCTCTTCTT+TGG | 0.334571 | 8.3:-28236858 | MS.gene89676:CDS |
| TGGCTCCAACAATTCCATTC+AGG | 0.334713 | 8.3:-28240880 | MS.gene89676:intron |
| TCTTATTCTACATAGGTTAG+AGG | 0.335448 | 8.3:-28233859 | MS.gene89676:intron |
| TTTAGGGCATCGCTTTATAA+AGG | 0.337081 | 8.3:-28239867 | MS.gene89676:CDS |
| CGGATGTATAATTCCAAAAC+TGG | 0.343864 | 8.3:-28235727 | MS.gene89676:CDS |
| CACTTCACCGTCTTTGATGC+TGG | 0.350461 | 8.3:+28234191 | None:intergenic |
| CACAAGAATGACAGCGAATA+TGG | 0.351617 | 8.3:-28234771 | MS.gene89676:CDS |
| TTGGCATTGGTGTAAATAGA+TGG | 0.353346 | 8.3:+28237507 | None:intergenic |
| TTATCTGTCCAGCTCAATCT+TGG | 0.357436 | 8.3:-28234276 | MS.gene89676:intron |
| CATTCCACAGGCTAAAGATT+TGG | 0.365954 | 8.3:-28236523 | MS.gene89676:intron |
| TTATATGTAAAGGCCTATTT+GGG | 0.366264 | 8.3:-28236049 | MS.gene89676:CDS |
| GAGCACTTACTTCATTTCTA+AGG | 0.367741 | 8.3:-28235960 | MS.gene89676:CDS |
| GTCTTTGATGCTGGCTCCAC+CGG | 0.369918 | 8.3:+28234200 | None:intergenic |
| TCTTCATTTCTGACTTCTCT+TGG | 0.370190 | 8.3:+28232928 | None:intergenic |
| TGGATCCATGAGAGTTCCTT+TGG | 0.376062 | 8.3:+28233604 | None:intergenic |
| TGGCGTGGCTCTAAAACATT+TGG | 0.377471 | 8.3:-28238377 | MS.gene89676:CDS |
| TATGCGAAACGGTTGGCTAT+TGG | 0.379907 | 8.3:-28237004 | MS.gene89676:CDS |
| ATCTAAAGTCGATCTCTTAC+CGG | 0.380760 | 8.3:+28237114 | None:intergenic |
| ACTCCATCATCGGTAGGAAT+TGG | 0.386672 | 8.3:+28234809 | None:intergenic |
| GTCATCAGTTGTATGTTGTT+TGG | 0.389959 | 8.3:+28237027 | None:intergenic |
| GAATATTGAGCATCTTCATT+TGG | 0.393812 | 8.3:+28233116 | None:intergenic |
| GGTTTCAACTTTGAAGTCTC+TGG | 0.401096 | 8.3:-28238299 | MS.gene89676:CDS |
| GTTAGAGGAAATTACTATAT+CGG | 0.403159 | 8.3:-28233844 | MS.gene89676:CDS |
| TACTGGTATTCTGACTATAT+CGG | 0.408684 | 8.3:+28236244 | None:intergenic |
| ACTGATCTTGAAATAATAGT+TGG | 0.409663 | 8.3:+28235418 | None:intergenic |
| TGGAATTGTTCTTCTCCGTT+TGG | 0.414621 | 8.3:-28233458 | MS.gene89676:CDS |
| AGAGTTATCAAGGCAACATT+AGG | 0.415243 | 8.3:+28233566 | None:intergenic |
| CAATCTTGGGATTTATACTA+AGG | 0.415444 | 8.3:-28234262 | MS.gene89676:CDS |
| TACTTCATTTCTAAGGCAGC+TGG | 0.419682 | 8.3:-28235953 | MS.gene89676:CDS |
| CAACACAGGTTCGAGATCAT+AGG | 0.421782 | 8.3:-28234619 | MS.gene89676:intron |
| TCACGCTGGCGTCGTACAAC+TGG | 0.425773 | 8.3:-28233799 | MS.gene89676:CDS |
| CTGATGGAGCAAATGCATAT+TGG | 0.425917 | 8.3:-28237340 | MS.gene89676:CDS |
| GTTGGCTATTGGAGCCTCTA+AGG | 0.425962 | 8.3:-28236993 | MS.gene89676:intron |
| TTTCTTTGTTGGAACCTGTA+AGG | 0.426076 | 8.3:+28238265 | None:intergenic |
| CGGCCTTAAAGCGATATGTT+AGG | 0.427636 | 8.3:-28237295 | MS.gene89676:CDS |
| AAAGTTTGTGTTTGCAGAGA+TGG | 0.431473 | 8.3:-28240685 | MS.gene89676:intron |
| TGAACCAAGACTCTGCATAT+TGG | 0.432026 | 8.3:+28237760 | None:intergenic |
| CCGTTTGGCACATCTATATG+AGG | 0.432117 | 8.3:-28233443 | MS.gene89676:intron |
| TGCAGCAGCTAAAGTCTTTG+TGG | 0.432176 | 8.3:+28241076 | None:intergenic |
| TATCTGTCCAGCTCAATCTT+GGG | 0.432754 | 8.3:-28234275 | MS.gene89676:intron |
| AGCGATGCCCTAAAGTTGTT+TGG | 0.434754 | 8.3:+28239876 | None:intergenic |
| AAGTGGAATTGATGCTTCAT+AGG | 0.440066 | 8.3:-28234173 | MS.gene89676:intron |
| TGATTTCTTCTGTAGGCATC+TGG | 0.440675 | 8.3:-28235472 | MS.gene89676:intron |
| CAGTGGCCACAACTGGTTTG+CGG | 0.443170 | 8.3:+28237479 | None:intergenic |
| ATTTCTAAGGCAGCTGGAAA+AGG | 0.447449 | 8.3:-28235947 | MS.gene89676:intron |
| CCCTTACCTTATTAACATAG+TGG | 0.452700 | 8.3:+28237718 | None:intergenic |
| GACAAGAACCTCAAGCAGTA+AGG | 0.456135 | 8.3:-28232875 | MS.gene89676:CDS |
| GCGGTCCAAGGTTACCTACT+TGG | 0.459802 | 8.3:-28239788 | MS.gene89676:CDS |
| TGATATGCAGGTGCCCTTCA+AGG | 0.460593 | 8.3:-28235200 | MS.gene89676:intron |
| TTGATAGGTATAAGGAGAAA+AGG | 0.463996 | 8.3:-28235847 | MS.gene89676:intron |
| GGATAGTAGTTTCCTGCTAC+AGG | 0.464263 | 8.3:+28234569 | None:intergenic |
| TGTTGTTGAGCTTGGTCCTA+TGG | 0.466620 | 8.3:-28232826 | MS.gene89676:CDS |
| TTTAAGAAAATTATATGTAA+AGG | 0.468019 | 8.3:-28236059 | MS.gene89676:CDS |
| TGTGGAGCACTATAATGAAC+AGG | 0.475976 | 8.3:+28238323 | None:intergenic |
| AATCATATCATGTGGACAAT+GGG | 0.476335 | 8.3:-28237798 | MS.gene89676:CDS |
| TTCTGTTTGGATCCTTCTGA+AGG | 0.477706 | 8.3:+28240706 | None:intergenic |
| TATAACCTGAATGGAATTGT+TGG | 0.477992 | 8.3:+28240875 | None:intergenic |
| ATAAATGATTATAACCTGAA+TGG | 0.478548 | 8.3:+28240866 | None:intergenic |
| ATATACCTCAAGAGTTATCA+AGG | 0.478631 | 8.3:+28233556 | None:intergenic |
| TTCTTTGTTGGAACCTGTAA+GGG | 0.480045 | 8.3:+28238266 | None:intergenic |
| AGGAAAATTGAACGTTCACT+TGG | 0.480310 | 8.3:-28240958 | MS.gene89676:CDS |
| GGGCGATGAAACTGATTCTC+AGG | 0.484607 | 8.3:-28235561 | MS.gene89676:intron |
| AAGACTCTGCATATTGGTAC+TGG | 0.486443 | 8.3:+28237766 | None:intergenic |
| TTTGACACGTTGTTCAACAT+TGG | 0.488889 | 8.3:+28238139 | None:intergenic |
| TTTGGCCTTGGAGATGCTCT+AGG | 0.491156 | 8.3:-28237085 | MS.gene89676:CDS |
| CAGCAAAGCTACTTTAGGTA+TGG | 0.493274 | 8.3:-28235593 | MS.gene89676:CDS |
| AAAATGACATGGAAGGTTGA+AGG | 0.496215 | 8.3:-28232906 | MS.gene89676:CDS |
| TGTGGAATGCTGTCTTCTGT+TGG | 0.496724 | 8.3:+28236537 | None:intergenic |
| TCCTTTAACAATACCAGCCC+CGG | 0.500351 | 8.3:+28240977 | None:intergenic |
| AAAGTTACTCAGCCTGTAGC+AGG | 0.503072 | 8.3:-28234581 | MS.gene89676:CDS |
| CAACCTCTGGACAACTCAAA+CGG | 0.503583 | 8.3:-28235747 | MS.gene89676:CDS |
| AGAGTCTTGGTTCAAGCAAA+TGG | 0.505251 | 8.3:-28237751 | MS.gene89676:CDS |
| TCTCACCATTCTTACTGTTG+AGG | 0.506377 | 8.3:+28235812 | None:intergenic |
| GGAATGCTGTCTTCTGTTGG+AGG | 0.506724 | 8.3:+28236540 | None:intergenic |
| ACAAAGTACAACACCGGGGC+TGG | 0.507473 | 8.3:-28240990 | MS.gene89676:CDS |
| CGGTCCACGAATTACCTTGA+AGG | 0.508635 | 8.3:+28235186 | None:intergenic |
| AGGACGACGGTAGAGGAGTA+GGG | 0.510321 | 8.3:-28234056 | MS.gene89676:CDS |
| GAGGACGACGGTAGAGGAGT+AGG | 0.514200 | 8.3:-28234057 | MS.gene89676:CDS |
| GGTCCAATTCCTACCGATGA+TGG | 0.517548 | 8.3:-28234812 | MS.gene89676:CDS |
| TAACGTTGAAATACAGTATG+TGG | 0.517950 | 8.3:-28236104 | MS.gene89676:CDS |
| AGTACCAATATGCAGAGTCT+TGG | 0.519215 | 8.3:-28237764 | MS.gene89676:CDS |
| GTCTTAGTTGATCGTGCCAC+CGG | 0.520403 | 8.3:-28234219 | MS.gene89676:CDS |
| GAGAACATTGACATCGGACC+GGG | 0.521614 | 8.3:-28235793 | MS.gene89676:CDS |
| CTAACATATCGCTTTAAGGC+CGG | 0.522316 | 8.3:+28237296 | None:intergenic |
| TCTTACTGTTGAGGTGTGAG+AGG | 0.523199 | 8.3:+28235821 | None:intergenic |
| TTTAATACAACCCCTCGTGC+TGG | 0.525147 | 8.3:-28239839 | MS.gene89676:CDS |
| TTTGGACACTCTGCGGTCCA+AGG | 0.528189 | 8.3:-28239800 | MS.gene89676:CDS |
| GCAGATAAAAGAGTTGAAAG+AGG | 0.528239 | 8.3:-28232967 | MS.gene89676:intron |
| ACTGTTGATCAATACTATGT+TGG | 0.529854 | 8.3:-28240900 | MS.gene89676:CDS |
| CAGCACCAAGTAGGTAACCT+TGG | 0.533551 | 8.3:+28239783 | None:intergenic |
| ACAAGAACCTCAAGCAGTAA+GGG | 0.535520 | 8.3:-28232874 | MS.gene89676:CDS |
| GGAGCAAATGCATATTGGAC+AGG | 0.535924 | 8.3:-28237335 | MS.gene89676:CDS |
| TCACACCTCAACAGTAAGAA+TGG | 0.536175 | 8.3:-28235817 | MS.gene89676:CDS |
| TAAGCCAACCAACATCATCA+TGG | 0.537764 | 8.3:+28240925 | None:intergenic |
| AAATGACATGGAAGGTTGAA+GGG | 0.537918 | 8.3:-28232905 | MS.gene89676:CDS |
| AGTTCCTTTGGTTAAATGAG+AGG | 0.539673 | 8.3:+28233616 | None:intergenic |
| TATCGGTACGATTCCATCCA+AGG | 0.540459 | 8.3:+28236261 | None:intergenic |
| ATAGTTGGAGAGGATTCCCT+TGG | 0.541021 | 8.3:+28235433 | None:intergenic |
| GATAATAACAGTACATGTGA+TGG | 0.541198 | 8.3:-28233997 | MS.gene89676:CDS |
| GTTTAATTCTTGGATTTACC+AGG | 0.541252 | 8.3:-28235140 | MS.gene89676:intron |
| TTTAACCAAAGGAACTCTCA+TGG | 0.542454 | 8.3:-28233609 | MS.gene89676:CDS |
| TTCGAGATCATAGGGAAGAC+TGG | 0.542554 | 8.3:-28234610 | MS.gene89676:CDS |
| ACAGGCTGAGTAACTTTAAG+TGG | 0.544000 | 8.3:+28234587 | None:intergenic |
| GTGCCCTTCAAGGTAATTCG+TGG | 0.546167 | 8.3:-28235190 | MS.gene89676:CDS |
| TTGATCGAGGACGACGGTAG+AGG | 0.546178 | 8.3:-28234063 | MS.gene89676:CDS |
| TAACATATCGCTTTAAGGCC+GGG | 0.546941 | 8.3:+28237297 | None:intergenic |
| TGTCTTGCTAGTAAGAAATC+CGG | 0.547021 | 8.3:-28236833 | MS.gene89676:CDS |
| AACACAGGTTCGAGATCATA+GGG | 0.547449 | 8.3:-28234618 | MS.gene89676:intron |
| AAATCATATCATGTGGACAA+TGG | 0.549647 | 8.3:-28237799 | MS.gene89676:CDS |
| TTTGATGCTGGCTCCACCGG+TGG | 0.551526 | 8.3:+28234203 | None:intergenic |
| TGGACCGCAGAGTGTCCAAA+AGG | 0.554538 | 8.3:+28239803 | None:intergenic |
| TATATCGGAATCCACAATGT+TGG | 0.555924 | 8.3:-28233829 | MS.gene89676:CDS |
| ATCGGTACGATTCCATCCAA+GGG | 0.556443 | 8.3:+28236262 | None:intergenic |
| CTTTAGGTATGGCTCTAGTG+AGG | 0.557136 | 8.3:-28235582 | MS.gene89676:CDS |
| CTTGTGGTGAAAGATTCATC+TGG | 0.558232 | 8.3:-28236130 | MS.gene89676:CDS |
| CAGCACCATGATGCTGTGAC+TGG | 0.559394 | 8.3:-28237055 | MS.gene89676:CDS |
| GGAATCCACAATGTTGGAGC+TGG | 0.559577 | 8.3:-28233823 | MS.gene89676:CDS |
| TGTTGCCTTGATAACTCTTG+AGG | 0.559803 | 8.3:-28233561 | MS.gene89676:intron |
| ACAAAATCTGAAGTGCTGAC+AGG | 0.566375 | 8.3:+28232846 | None:intergenic |
| CCACACTCCCATGATGATGT+TGG | 0.566834 | 8.3:-28240933 | MS.gene89676:CDS |
| CGATGATGGAGTAGGAAAAG+AGG | 0.568194 | 8.3:-28234798 | MS.gene89676:CDS |
| TGTCAATACCTCCACTCGGA+TGG | 0.568278 | 8.3:-28235982 | MS.gene89676:CDS |
| GTGCATATATATTCCGCCCA+AGG | 0.568614 | 8.3:-28235450 | MS.gene89676:CDS |
| CAACTGATGACTATGCGAAA+CGG | 0.570786 | 8.3:-28237015 | MS.gene89676:CDS |
| AAAATGCCGCAAACCAGTTG+TGG | 0.570790 | 8.3:-28237485 | MS.gene89676:CDS |
| ATTTCTCATAGGTATGCTGA+TGG | 0.571547 | 8.3:-28237356 | MS.gene89676:intron |
| CAGTGCCAGTCACAGCATCA+TGG | 0.573116 | 8.3:+28237050 | None:intergenic |
| GGACTACCCCTTACTGCTTG+AGG | 0.573385 | 8.3:+28232867 | None:intergenic |
| TTTGTTCTACCCACCATCGA+TGG | 0.574017 | 8.3:+28240476 | None:intergenic |
| TCTGTTTGGATCCTTCTGAA+GGG | 0.574391 | 8.3:+28240707 | None:intergenic |
| CATACACAAAGTACAACACC+GGG | 0.574852 | 8.3:-28240995 | MS.gene89676:CDS |
| ATTACCAAATCTTTAGCCTG+TGG | 0.575869 | 8.3:+28236519 | None:intergenic |
| GATTTGTATTCAGGTAGTTG+TGG | 0.577810 | 8.3:-28236294 | MS.gene89676:intron |
| CTACTTAAGGCGCTTGATCG+AGG | 0.577909 | 8.3:-28234076 | MS.gene89676:intron |
| GTTCATTATAGTGCTCCACA+TGG | 0.578573 | 8.3:-28238320 | MS.gene89676:CDS |
| TTTCCTACTCCATCATCGGT+AGG | 0.579151 | 8.3:+28234803 | None:intergenic |
| GGTCAATCATGTCTATGTAG+TGG | 0.580668 | 8.3:+28239897 | None:intergenic |
| TGAGAACATTGACATCGGAC+CGG | 0.580861 | 8.3:-28235794 | MS.gene89676:CDS |
| TTAGTTGATCGTGCCACCGG+TGG | 0.582532 | 8.3:-28234216 | MS.gene89676:CDS |
| TCGTGGACCGCTAGTTGATG+AGG | 0.582635 | 8.3:-28235173 | MS.gene89676:CDS |
| ACTCCCATGATGATGTTGGT+TGG | 0.586522 | 8.3:-28240929 | MS.gene89676:CDS |
| ATACAACCCCTCGTGCTGGT+TGG | 0.587540 | 8.3:-28239835 | MS.gene89676:CDS |
| GGTCCACGAATTACCTTGAA+GGG | 0.588939 | 8.3:+28235187 | None:intergenic |
| CAGAAATGAAGAAAATGACA+TGG | 0.589555 | 8.3:-28232917 | MS.gene89676:CDS |
| AAGTCCTCTCATTTAACCAA+AGG | 0.591439 | 8.3:-28233620 | MS.gene89676:CDS |
| TGCATATATATTCCGCCCAA+GGG | 0.591672 | 8.3:-28235449 | MS.gene89676:CDS |
| GTTATCAAGGCAACATTAGG+AGG | 0.593368 | 8.3:+28233569 | None:intergenic |
| ATAATGAACAGGAAAAGTGT+TGG | 0.593523 | 8.3:+28238334 | None:intergenic |
| CAGTACATGTGATGGACTAA+CGG | 0.593948 | 8.3:-28233989 | MS.gene89676:intron |
| AATGAAGAAAATGACATGGA+AGG | 0.594578 | 8.3:-28232913 | MS.gene89676:CDS |
| GAATGCTGTCTTCTGTTGGA+GGG | 0.595701 | 8.3:+28236541 | None:intergenic |
| AACAGAAGACAGCATTCCAC+AGG | 0.598348 | 8.3:-28236535 | MS.gene89676:CDS |
| AAGCCAACCAACATCATCAT+GGG | 0.600163 | 8.3:+28240926 | None:intergenic |
| ACATTGGAATCAAATAAAAG+AGG | 0.600165 | 8.3:+28238155 | None:intergenic |
| CATCCGTTTGAGTTGTCCAG+AGG | 0.600303 | 8.3:+28235744 | None:intergenic |
| CCTCATATAGATGTGCCAAA+CGG | 0.601534 | 8.3:+28233443 | None:intergenic |
| TCACTTGAAGTTATTTGGCG+TGG | 0.601634 | 8.3:-28238392 | MS.gene89676:CDS |
| TAGTTGGAGAGGATTCCCTT+GGG | 0.603621 | 8.3:+28235434 | None:intergenic |
| ATGCAAACTTGTTCATCGAG+TGG | 0.604106 | 8.3:+28234030 | None:intergenic |
| TGAACAAGTTTGCATAGCAA+AGG | 0.606055 | 8.3:-28234022 | MS.gene89676:CDS |
| ATTCCTACCGATGATGGAGT+AGG | 0.607819 | 8.3:-28234806 | MS.gene89676:CDS |
| CTTATTGGCTTTCACACACG+AGG | 0.608767 | 8.3:-28233755 | MS.gene89676:intron |
| CGATATGTTAGGATTCTAAG+TGG | 0.608949 | 8.3:-28237284 | MS.gene89676:CDS |
| TTTAGGTATGGCTCTAGTGA+GGG | 0.612375 | 8.3:-28235581 | MS.gene89676:CDS |
| CAGTGTATTCAATTTCAGCA+TGG | 0.612815 | 8.3:+28234946 | None:intergenic |
| TCTTGAAATAATAGTTGGAG+AGG | 0.615123 | 8.3:+28235423 | None:intergenic |
| CAAGAACCTCAAGCAGTAAG+GGG | 0.615364 | 8.3:-28232873 | MS.gene89676:CDS |
| TCCTCACGGGAAGTAGTCAT+CGG | 0.616305 | 8.3:+28237452 | None:intergenic |
| TGATGACTATGCGAAACGGT+TGG | 0.617647 | 8.3:-28237011 | MS.gene89676:CDS |
| AGCGAATATGGTCACAAACA+AGG | 0.621004 | 8.3:-28234759 | MS.gene89676:CDS |
| TGGAAGGTTGAAGGGGACAA+AGG | 0.622912 | 8.3:-28232897 | MS.gene89676:CDS |
| AAGTGCTAAACATTGATCAC+CGG | 0.623215 | 8.3:+28236814 | None:intergenic |
| AATAGATGGAGTAGAATACA+AGG | 0.623885 | 8.3:+28237521 | None:intergenic |
| GCATACACAAAGTACAACAC+CGG | 0.627353 | 8.3:-28240996 | MS.gene89676:CDS |
| CAGCATCAAAGACGGTGAAG+TGG | 0.630999 | 8.3:-28234190 | MS.gene89676:CDS |
| TGGAAAGTACGAATTTCCAT+AGG | 0.632636 | 8.3:+28232810 | None:intergenic |
| GTGTATGCACGATGAAGCCA+CGG | 0.634772 | 8.3:-28239921 | MS.gene89676:CDS |
| TAGGTTACTAGGCTGTACAA+AGG | 0.638409 | 8.3:-28234975 | MS.gene89676:CDS |
| TCAATCTGCCAACCAGCACG+AGG | 0.638439 | 8.3:+28239827 | None:intergenic |
| TTACACGAATTCTAGCTGAC+CGG | 0.638530 | 8.3:+28240414 | None:intergenic |
| AATGACATGGAAGGTTGAAG+GGG | 0.640209 | 8.3:-28232904 | MS.gene89676:CDS |
| TGTGTGAAAGCCAATAAGAC+TGG | 0.640370 | 8.3:+28233760 | None:intergenic |
| CAAGTGTCAATACCTCCACT+CGG | 0.641411 | 8.3:-28235986 | MS.gene89676:CDS |
| GGTGGAGCCAGCATCAAAGA+CGG | 0.641636 | 8.3:-28234198 | MS.gene89676:CDS |
| AGGTTACCTACTTGGTGCTG+AGG | 0.641981 | 8.3:-28239780 | MS.gene89676:intron |
| AGGCGCTTGATCGAGGACGA+CGG | 0.642101 | 8.3:-28234069 | MS.gene89676:CDS |
| CCAACATCATCATGGGAGTG+TGG | 0.645741 | 8.3:+28240933 | None:intergenic |
| CGAGGACAAATCATATCATG+TGG | 0.647700 | 8.3:-28237806 | MS.gene89676:CDS |
| TAAGTGCTCCATCCGAGTGG+AGG | 0.649027 | 8.3:+28235974 | None:intergenic |
| AATCTGCCAACCAGCACGAG+GGG | 0.650265 | 8.3:+28239829 | None:intergenic |
| GGTTAATGAAGCTAATCTTG+TGG | 0.650521 | 8.3:-28236146 | MS.gene89676:CDS |
| ATGTTGGAGCTGGTTCACGC+TGG | 0.652314 | 8.3:-28233813 | MS.gene89676:CDS |
| GTGTCGGCAGAAATGGTGGT+TGG | 0.656017 | 8.3:-28239943 | MS.gene89676:intron |
| GGACGACGGTAGAGGAGTAG+GGG | 0.657442 | 8.3:-28234055 | MS.gene89676:CDS |
| TGATGTGTCGGCAGAAATGG+TGG | 0.661957 | 8.3:-28239947 | MS.gene89676:intron |
| CAATTCCTAGAGCATCTCCA+AGG | 0.662980 | 8.3:+28237080 | None:intergenic |
| CAATCTGCCAACCAGCACGA+GGG | 0.663990 | 8.3:+28239828 | None:intergenic |
| TGAAATACAGTATGTGGACG+TGG | 0.665342 | 8.3:-28236098 | MS.gene89676:CDS |
| GTGAACCAGCTCCAACATTG+TGG | 0.666345 | 8.3:+28233818 | None:intergenic |
| AGCATGTGTTGAGAATGTGT+TGG | 0.668971 | 8.3:-28240745 | MS.gene89676:CDS |
| TTGGAGAGGATTCCCTTGGG+CGG | 0.670985 | 8.3:+28235437 | None:intergenic |
| CATGTCTATGTAGTGGACCG+TGG | 0.674129 | 8.3:+28239904 | None:intergenic |
| TACCGACCTCAGCACCAAGT+AGG | 0.684400 | 8.3:+28239774 | None:intergenic |
| ACTTCAAAGTTGAAACCATG+TGG | 0.684452 | 8.3:+28238305 | None:intergenic |
| AAGTAAGTGCTCCATCCGAG+TGG | 0.685230 | 8.3:+28235971 | None:intergenic |
| TGATGAACCTCATCAACTAG+CGG | 0.689176 | 8.3:+28235166 | None:intergenic |
| TATTATAGGCGAATGTGACG+AGG | 0.698266 | 8.3:-28237824 | MS.gene89676:intron |
| TCGGTACGATTCCATCCAAG+GGG | 0.704865 | 8.3:+28236263 | None:intergenic |
| AATGGTGAGAACATTGACAT+CGG | 0.709922 | 8.3:-28235799 | MS.gene89676:CDS |
| CATATCGCTTTAAGGCCGGG+CGG | 0.764387 | 8.3:+28237300 | None:intergenic |
| CGGTACGATTCCATCCAAGG+GGG | 0.786068 | 8.3:+28236264 | None:intergenic |
| ATACACAAAGTACAACACCG+GGG | 0.864914 | 8.3:-28240994 | MS.gene89676:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28232797 | 28241105 | 28232797 | ID=MS.gene89676 |
| chr8.3 | mRNA | 28232797 | 28241105 | 28232797 | ID=MS.gene89676.t1;Parent=MS.gene89676 |
| chr8.3 | exon | 28240881 | 28241105 | 28240881 | ID=MS.gene89676.t1.exon1;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28240881 | 28241105 | 28240881 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28240686 | 28240769 | 28240686 | ID=MS.gene89676.t1.exon2;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28240686 | 28240769 | 28240686 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28240418 | 28240506 | 28240418 | ID=MS.gene89676.t1.exon3;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28240418 | 28240506 | 28240418 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28239781 | 28239955 | 28239781 | ID=MS.gene89676.t1.exon4;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28239781 | 28239955 | 28239781 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28238280 | 28238483 | 28238280 | ID=MS.gene89676.t1.exon5;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28238280 | 28238483 | 28238280 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28238112 | 28238183 | 28238112 | ID=MS.gene89676.t1.exon6;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28238112 | 28238183 | 28238112 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28237725 | 28237838 | 28237725 | ID=MS.gene89676.t1.exon7;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28237725 | 28237838 | 28237725 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28237459 | 28237559 | 28237459 | ID=MS.gene89676.t1.exon8;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28237459 | 28237559 | 28237459 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28237274 | 28237367 | 28237274 | ID=MS.gene89676.t1.exon9;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28237274 | 28237367 | 28237274 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28236994 | 28237161 | 28236994 | ID=MS.gene89676.t1.exon10;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28236994 | 28237161 | 28236994 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28236796 | 28236885 | 28236796 | ID=MS.gene89676.t1.exon11;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28236796 | 28236885 | 28236796 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28236524 | 28236589 | 28236524 | ID=MS.gene89676.t1.exon12;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28236524 | 28236589 | 28236524 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28236247 | 28236303 | 28236247 | ID=MS.gene89676.t1.exon13;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28236247 | 28236303 | 28236247 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28235948 | 28236167 | 28235948 | ID=MS.gene89676.t1.exon14;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28235948 | 28236167 | 28235948 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28235726 | 28235862 | 28235726 | ID=MS.gene89676.t1.exon15;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28235726 | 28235862 | 28235726 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28235562 | 28235630 | 28235562 | ID=MS.gene89676.t1.exon16;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28235562 | 28235630 | 28235562 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28235420 | 28235479 | 28235420 | ID=MS.gene89676.t1.exon17;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28235420 | 28235479 | 28235420 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28235141 | 28235212 | 28235141 | ID=MS.gene89676.t1.exon18;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28235141 | 28235212 | 28235141 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28234947 | 28234994 | 28234947 | ID=MS.gene89676.t1.exon19;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28234947 | 28234994 | 28234947 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28234718 | 28234837 | 28234718 | ID=MS.gene89676.t1.exon20;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28234718 | 28234837 | 28234718 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28234568 | 28234633 | 28234568 | ID=MS.gene89676.t1.exon21;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28234568 | 28234633 | 28234568 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28234174 | 28234286 | 28234174 | ID=MS.gene89676.t1.exon22;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28234174 | 28234286 | 28234174 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28233990 | 28234089 | 28233990 | ID=MS.gene89676.t1.exon23;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28233990 | 28234089 | 28233990 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28233756 | 28233866 | 28233756 | ID=MS.gene89676.t1.exon24;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28233756 | 28233866 | 28233756 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28233562 | 28233657 | 28233562 | ID=MS.gene89676.t1.exon25;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28233562 | 28233657 | 28233562 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28233444 | 28233491 | 28233444 | ID=MS.gene89676.t1.exon26;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28233444 | 28233491 | 28233444 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28233070 | 28233138 | 28233070 | ID=MS.gene89676.t1.exon27;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28233070 | 28233138 | 28233070 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| chr8.3 | exon | 28232797 | 28232985 | 28232797 | ID=MS.gene89676.t1.exon28;Parent=MS.gene89676.t1 |
| chr8.3 | CDS | 28232797 | 28232985 | 28232797 | ID=cds.MS.gene89676.t1;Parent=MS.gene89676.t1 |
| Gene Sequence |
| Protein sequence |
