Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89838.t1 | XP_003611962.2 | 97.6 | 382 | 9 | 0 | 1 | 382 | 69 | 450 | 8.80E-211 | 742.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89838.t1 | Q9SUK9 | 64.2 | 296 | 104 | 2 | 87 | 382 | 171 | 464 | 6.8e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89838.t1 | G7KC88 | 97.6 | 382 | 9 | 0 | 1 | 382 | 69 | 450 | 6.3e-211 | 742.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049805 | MS.gene89838 | 0.802543 | 5.34E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene89838 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene89838 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene89838 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene052310 | MS.gene89838 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene89838 | 0.818672 | 1.74E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene89838 | 0.802258 | 6.11E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene89838 | 0.821253 | 4.45E-53 | -1.69E-46 |
| MS.gene056719 | MS.gene89838 | 0.804944 | 1.69E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene89838 | 0.807189 | 5.71E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene89838 | 0.807323 | 5.35E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene89838 | 0.805397 | 1.36E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene89838 | 0.809914 | 1.50E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene89838 | 0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene058376 | MS.gene89838 | 0.817927 | 2.56E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene89838 | 0.854723 | 1.02E-61 | -1.69E-46 |
| MS.gene058928 | MS.gene89838 | 0.800484 | 1.41E-48 | -1.69E-46 |
| MS.gene05907 | MS.gene89838 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene89838 | 0.806607 | 7.58E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene89838 | 0.857999 | 1.11E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene89838 | 0.812108 | 5.01E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene89838 | 0.800438 | 1.44E-48 | -1.69E-46 |
| MS.gene060403 | MS.gene89838 | 0.812432 | 4.25E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene89838 | 0.806946 | 6.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89838.t1 | MTR_5g019790 | 97.644 | 382 | 9 | 0 | 1 | 382 | 69 | 450 | 0.0 | 771 |
| MS.gene89838.t1 | MTR_1g022030 | 64.630 | 311 | 99 | 4 | 71 | 379 | 204 | 505 | 3.86e-134 | 393 |
| MS.gene89838.t1 | MTR_3g031360 | 38.672 | 256 | 135 | 7 | 138 | 379 | 62 | 309 | 5.15e-41 | 147 |
| MS.gene89838.t1 | MTR_2g008590 | 35.433 | 254 | 158 | 4 | 128 | 379 | 1007 | 1256 | 2.53e-40 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89838.t1 | AT4G16580 | 64.189 | 296 | 104 | 2 | 87 | 382 | 171 | 464 | 1.87e-132 | 387 |
| MS.gene89838.t1 | AT5G66720 | 53.333 | 390 | 148 | 7 | 1 | 379 | 48 | 414 | 9.78e-130 | 379 |
| MS.gene89838.t1 | AT5G66720 | 53.247 | 385 | 153 | 6 | 1 | 379 | 48 | 411 | 1.49e-128 | 375 |
| MS.gene89838.t1 | AT4G33500 | 41.036 | 251 | 141 | 4 | 128 | 376 | 474 | 719 | 8.56e-51 | 181 |
| MS.gene89838.t1 | AT2G30170 | 35.849 | 265 | 147 | 8 | 130 | 379 | 42 | 298 | 5.18e-45 | 157 |
| MS.gene89838.t1 | AT2G30170 | 38.974 | 195 | 111 | 6 | 130 | 320 | 7 | 197 | 1.78e-37 | 135 |
| MS.gene89838.t1 | AT2G30170 | 34.934 | 229 | 127 | 7 | 165 | 379 | 1 | 221 | 2.49e-37 | 134 |
| MS.gene89838.t1 | AT2G30170 | 38.974 | 195 | 111 | 6 | 130 | 320 | 42 | 232 | 6.98e-37 | 135 |
| MS.gene89838.t1 | AT2G30170 | 38.365 | 159 | 91 | 5 | 165 | 320 | 1 | 155 | 8.86e-30 | 114 |
| MS.gene89838.t1 | AT2G30170 | 38.255 | 149 | 87 | 4 | 130 | 275 | 42 | 188 | 7.28e-27 | 107 |
| MS.gene89838.t1 | AT2G30170 | 34.641 | 153 | 82 | 4 | 239 | 379 | 12 | 158 | 2.27e-21 | 90.1 |
Find 101 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTAAATGCTATTAATT+TGG | 0.082909 | 5.3:-11332639 | MS.gene89838:CDS |
| TTCACCTTCCAATGCTATTC+TGG | 0.118484 | 5.3:-11334777 | MS.gene89838:CDS |
| TTGCAGATGGTGTTGGTGGC+TGG | 0.202067 | 5.3:-11333339 | MS.gene89838:CDS |
| TGTATGGTCCTTTGAATTTC+GGG | 0.205284 | 5.3:-11334613 | MS.gene89838:CDS |
| TTGTATGGTCCTTTGAATTT+CGG | 0.224793 | 5.3:-11334614 | MS.gene89838:CDS |
| CCGCTCCTCGCCAATTGATA+TGG | 0.249497 | 5.3:+11332539 | None:intergenic |
| TCAGCTGCTGCTCTTGAGTA+TGG | 0.270822 | 5.3:-11332193 | MS.gene89838:CDS |
| CAGAATTCGGGTTTGCTTCA+TGG | 0.278734 | 5.3:-11334560 | MS.gene89838:CDS |
| GCCTTCTCTAACACCCTTAC+TGG | 0.296839 | 5.3:+11333223 | None:intergenic |
| TCGAATTGCTCTTGCGGAAT+TGG | 0.307860 | 5.3:+11333270 | None:intergenic |
| TATTCTGCTTGCTGCTTGGC+TGG | 0.313286 | 5.3:-11334509 | MS.gene89838:CDS |
| TACTGGATTAAAAGAACCTT+TGG | 0.317637 | 5.3:+11333240 | None:intergenic |
| CGGAATTGGCTACAAGTTCC+TGG | 0.321023 | 5.3:+11333284 | None:intergenic |
| GCACTAAATGCTATTAATTT+GGG | 0.330419 | 5.3:-11332638 | MS.gene89838:CDS |
| TCAAGAGCAGCAGCTGAAAA+TGG | 0.337984 | 5.3:+11332199 | None:intergenic |
| TTGAACCCGCGTTGTTGAAC+AGG | 0.339753 | 5.3:+11332566 | None:intergenic |
| TAGTTGGAGGATTCAGAATT+CGG | 0.347094 | 5.3:-11334573 | MS.gene89838:CDS |
| GGATTCATTGTGATAAGAAA+TGG | 0.353829 | 5.3:-11332608 | MS.gene89838:CDS |
| GCTATTAATTTGGGTGATAG+TGG | 0.356777 | 5.3:-11332629 | MS.gene89838:CDS |
| TCACCTTCCAATGCTATTCT+GGG | 0.384802 | 5.3:-11334776 | MS.gene89838:CDS |
| ATCTTATTCTGCTTGCTGCT+TGG | 0.390535 | 5.3:-11334513 | MS.gene89838:CDS |
| CCAGGAGATATCATTGTTGC+TGG | 0.394796 | 5.3:-11332370 | MS.gene89838:CDS |
| AAGCCCTTGAAGATGTTATC+AGG | 0.397966 | 5.3:-11333448 | MS.gene89838:CDS |
| GAGTTTGAGAAGACCGCAAC+AGG | 0.399205 | 5.3:-11334639 | MS.gene89838:CDS |
| TGCAGATGGTGTTGGTGGCT+GGG | 0.399726 | 5.3:-11333338 | MS.gene89838:CDS |
| CGCTCCTCGCCAATTGATAT+GGG | 0.403739 | 5.3:+11332540 | None:intergenic |
| TTCAAGGGAAGAACTCATAA+AGG | 0.409592 | 5.3:-11334680 | MS.gene89838:CDS |
| GTTCAATTTCCCATATCAAT+TGG | 0.409645 | 5.3:-11332549 | MS.gene89838:CDS |
| TCAAGGGAAGAACTCATAAA+GGG | 0.414978 | 5.3:-11334679 | MS.gene89838:CDS |
| GAGTATGGATACCGATTTGA+TGG | 0.417998 | 5.3:-11332178 | MS.gene89838:CDS |
| ATGATATCTCCTGGAGCAAC+AGG | 0.431491 | 5.3:+11332379 | None:intergenic |
| GATATTGTTGGAGTGGTTGT+AGG | 0.433182 | 5.3:-11332313 | MS.gene89838:CDS |
| CAGCCCTCCTGATGAACAAC+TGG | 0.434352 | 5.3:-11334459 | MS.gene89838:CDS |
| GTTGGTGGCTGGGCAGATGT+TGG | 0.436846 | 5.3:-11333328 | MS.gene89838:CDS |
| AGTTGGAGGATTCAGAATTC+GGG | 0.439453 | 5.3:-11334572 | MS.gene89838:CDS |
| GCATGCTGGTGTGTACTTCA+AGG | 0.449823 | 5.3:-11334696 | MS.gene89838:CDS |
| AGCGAGCTCTTGACACGAAA+AGG | 0.460925 | 5.3:-11332228 | MS.gene89838:CDS |
| TGATCCTGATAACATCTTCA+AGG | 0.461298 | 5.3:+11333444 | None:intergenic |
| CAGTTGTTCATCAGGAGGGC+TGG | 0.467010 | 5.3:+11334460 | None:intergenic |
| ACTGGATTAAAAGAACCTTT+GGG | 0.468734 | 5.3:+11333241 | None:intergenic |
| TGTAAGACACGACAACTGTT+AGG | 0.469269 | 5.3:+11332140 | None:intergenic |
| ATCATTGTTGCTGGAACAGA+TGG | 0.479550 | 5.3:-11332361 | MS.gene89838:CDS |
| ATATCACTCATTGACTGAGC+TGG | 0.489631 | 5.3:+11332114 | None:intergenic |
| TTTACAGTACCTGTTGCTCC+AGG | 0.495219 | 5.3:-11332388 | MS.gene89838:CDS |
| ATGTACAACAATGATATTGT+TGG | 0.496451 | 5.3:-11332325 | MS.gene89838:CDS |
| TGCTCAGAAGATAGCAGCAT+TGG | 0.497423 | 5.3:-11332257 | MS.gene89838:CDS |
| AACATCTCCCAGAATAGCAT+TGG | 0.499454 | 5.3:+11334769 | None:intergenic |
| CACGTACATGTTAGCCAAAG+TGG | 0.502945 | 5.3:+11334427 | None:intergenic |
| CCAGCAACAATGATATCTCC+TGG | 0.503201 | 5.3:+11332370 | None:intergenic |
| CAAGTTTGCCTCCATCAAAT+CGG | 0.504453 | 5.3:+11332167 | None:intergenic |
| TGTGAAGATGAACAAGCAAT+TGG | 0.507426 | 5.3:-11333364 | MS.gene89838:CDS |
| GATTCATTGTGATAAGAAAT+GGG | 0.509981 | 5.3:-11332607 | MS.gene89838:CDS |
| CCTCCAACTAGCATCAAAAG+TGG | 0.518120 | 5.3:+11334586 | None:intergenic |
| ATCCAGATAAGGTGGCGACT+GGG | 0.519570 | 5.3:-11333408 | MS.gene89838:CDS |
| CATCCAGATAAGGTGGCGAC+TGG | 0.520452 | 5.3:-11333409 | MS.gene89838:CDS |
| ATCTTCTGAGCAGTTGCTTG+TGG | 0.525652 | 5.3:+11332268 | None:intergenic |
| ACTGGAAAACTCCTCCACTT+TGG | 0.533832 | 5.3:-11334441 | MS.gene89838:CDS |
| TATCATTGCTCTTATCAATG+AGG | 0.538722 | 5.3:-11333161 | MS.gene89838:intron |
| CAAGATTTCACAAAGCATGC+TGG | 0.538735 | 5.3:-11334710 | MS.gene89838:CDS |
| GGTGCAACTAGAGCTAGATT+AGG | 0.539864 | 5.3:-11332292 | MS.gene89838:CDS |
| AGAGCTAGGTAGATCACCTT+CGG | 0.542202 | 5.3:+11332514 | None:intergenic |
| ATTGGTGTTGCAGATGGTGT+TGG | 0.543019 | 5.3:-11333346 | MS.gene89838:CDS |
| TTTCCAGTTGTTCATCAGGA+GGG | 0.543076 | 5.3:+11334456 | None:intergenic |
| GAAGGTGATCTACCTAGCTC+TGG | 0.545796 | 5.3:-11332512 | MS.gene89838:CDS |
| TTCCTCTCGAATTGCTCTTG+CGG | 0.547274 | 5.3:+11333264 | None:intergenic |
| GGTGTTGCAGATGGTGTTGG+TGG | 0.549063 | 5.3:-11333343 | MS.gene89838:CDS |
| GTCGAGAAATTCTTTGTCCA+CGG | 0.551550 | 5.3:+11334536 | None:intergenic |
| TCCAGATAAGGTGGCGACTG+GGG | 0.551906 | 5.3:-11333407 | MS.gene89838:CDS |
| AACTTTACCTCGCCAGAGCT+AGG | 0.556889 | 5.3:+11332500 | None:intergenic |
| CATGCTGGTGTGTACTTCAA+GGG | 0.557081 | 5.3:-11334695 | MS.gene89838:CDS |
| GTCGCCACCTTATCTGGATG+TGG | 0.559731 | 5.3:+11333412 | None:intergenic |
| GGAATTGGCTACAAGTTCCT+GGG | 0.570141 | 5.3:+11333285 | None:intergenic |
| GTGGAACGCCCGAAATTCAA+AGG | 0.571207 | 5.3:+11334605 | None:intergenic |
| CGGGTTTGCTTCATGGACCG+TGG | 0.571395 | 5.3:-11334553 | MS.gene89838:CDS |
| TGAACCCGCGTTGTTGAACA+GGG | 0.574747 | 5.3:+11332567 | None:intergenic |
| TTACCTACCACATCCAGATA+AGG | 0.576882 | 5.3:-11333419 | MS.gene89838:CDS |
| TCCAGTAAGGGTGTTAGAGA+AGG | 0.582497 | 5.3:-11333224 | MS.gene89838:CDS |
| GGCAGATGTTGGTGTTAATG+CGG | 0.593105 | 5.3:-11333317 | MS.gene89838:CDS |
| CCATATCAATTGGCGAGGAG+CGG | 0.596295 | 5.3:-11332539 | MS.gene89838:CDS |
| CCAGATAAGGTGGCGACTGG+GGG | 0.601048 | 5.3:-11333406 | MS.gene89838:CDS |
| GCAGATGTTGGTGTTAATGC+GGG | 0.602920 | 5.3:-11333316 | MS.gene89838:CDS |
| GATCCTGATAACATCTTCAA+GGG | 0.603871 | 5.3:+11333445 | None:intergenic |
| CAAGCAATTGGTGTTGCAGA+TGG | 0.607010 | 5.3:-11333352 | MS.gene89838:CDS |
| CCACCTTATCTGGATGTGGT+AGG | 0.607414 | 5.3:+11333416 | None:intergenic |
| CAACAATGATATTGTTGGAG+TGG | 0.615629 | 5.3:-11332320 | MS.gene89838:CDS |
| TTGGCGAGGAGCGGTACCGA+AGG | 0.618376 | 5.3:-11332530 | MS.gene89838:CDS |
| AGTCCCCTGTTCAACAACGC+GGG | 0.619635 | 5.3:-11332571 | MS.gene89838:CDS |
| GGACCATACAAAACCTGTTG+CGG | 0.623270 | 5.3:+11334626 | None:intergenic |
| AGCAATGATACAAACAGTTG+AGG | 0.624236 | 5.3:+11333174 | None:intergenic |
| TAATGCGGGACTGTATGCCC+AGG | 0.631859 | 5.3:-11333302 | MS.gene89838:CDS |
| ATTTCCCATATCAATTGGCG+AGG | 0.641059 | 5.3:-11332544 | MS.gene89838:CDS |
| TCTCCCAGAATAGCATTGGA+AGG | 0.642675 | 5.3:+11334773 | None:intergenic |
| CCTACCACATCCAGATAAGG+TGG | 0.648319 | 5.3:-11333416 | MS.gene89838:CDS |
| TGATCTACCTAGCTCTGGCG+AGG | 0.657103 | 5.3:-11332507 | MS.gene89838:intron |
| TATGGATACCGATTTGATGG+AGG | 0.658318 | 5.3:-11332175 | MS.gene89838:CDS |
| ACTCATAAAGGGTTTGTGCG+AGG | 0.664894 | 5.3:-11334668 | MS.gene89838:CDS |
| TTCCGCAAGAGCAATTCGAG+AGG | 0.688045 | 5.3:-11333266 | MS.gene89838:CDS |
| GCAATTCGAGAGGAACCCAA+AGG | 0.688593 | 5.3:-11333256 | MS.gene89838:CDS |
| AAGTCCCCTGTTCAACAACG+CGG | 0.711155 | 5.3:-11332572 | MS.gene89838:CDS |
| GTACATGTTAGCCAAAGTGG+AGG | 0.719821 | 5.3:+11334430 | None:intergenic |
| GAACCCGCGTTGTTGAACAG+GGG | 0.730041 | 5.3:+11332568 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTACAGAAATTTT+AGG | - | chr5.3:11332709-11332728 | MS.gene89838:intron | 10.0% |
| !! | GAATTAATTAAATAACAACT+TGG | - | chr5.3:11332905-11332924 | MS.gene89838:intron | 15.0% |
| !! | TTATTTAATTAATTCATGAC+AGG | + | chr5.3:11332900-11332919 | None:intergenic | 15.0% |
| !!! | TAAATCATGGTTTTAAATTA+TGG | + | chr5.3:11332834-11332853 | None:intergenic | 15.0% |
| !! | AAAGAATGAAAATTAATCAG+TGG | + | chr5.3:11334223-11334242 | None:intergenic | 20.0% |
| !! | CTATTTCAAACAACATAAAT+AGG | + | chr5.3:11332581-11332600 | None:intergenic | 20.0% |
| !!! | ATTTATGTTGTTTGAAATAG+AGG | - | chr5.3:11332581-11332600 | MS.gene89838:CDS | 20.0% |
| !!! | TGATTAATTTTCATTCTTTG+TGG | - | chr5.3:11334224-11334243 | MS.gene89838:intron | 20.0% |
| ! | AAACCTTTATATTACTGATG+CGG | - | chr5.3:11332801-11332820 | MS.gene89838:intron | 25.0% |
| ! | AAGTTTATCAATTTATGTGC+AGG | - | chr5.3:11334489-11334508 | MS.gene89838:CDS | 25.0% |
| ! | ATGTACAACAATGATATTGT+TGG | - | chr5.3:11334577-11334596 | MS.gene89838:CDS | 25.0% |
| ! | GATTCATTGTGATAAGAAAT+GGG | - | chr5.3:11334295-11334314 | MS.gene89838:intron | 25.0% |
| ! | GCACTAAATGCTATTAATTT+GGG | - | chr5.3:11334264-11334283 | MS.gene89838:intron | 25.0% |
| ! | GTACTTAAAAACTTAAGACT+CGG | + | chr5.3:11334111-11334130 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr5.3:11333295-11333314 | None:intergenic | 25.0% |
| ! | TATTAGAGAAACCATTAGAA+AGG | - | chr5.3:11333246-11333265 | MS.gene89838:CDS | 25.0% |
| ! | TATTTAATTGATTGAGTGAC+AGG | + | chr5.3:11334054-11334073 | None:intergenic | 25.0% |
| ! | TCAAACAACATAAATAGGAT+AGG | + | chr5.3:11332576-11332595 | None:intergenic | 25.0% |
| !! | AATTTTGTACAATTCATGTC+TGG | - | chr5.3:11333901-11333920 | MS.gene89838:intron | 25.0% |
| !! | CATCAGTAATATAAAGGTTT+TGG | + | chr5.3:11332801-11332820 | None:intergenic | 25.0% |
| !! | TTGTTTTCTTTTCATCAACA+TGG | - | chr5.3:11333877-11333896 | MS.gene89838:intron | 25.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | chr5.3:11333255-11333274 | MS.gene89838:CDS | 30.0% | |
| AACCTTTATATTACTGATGC+GGG | - | chr5.3:11332802-11332821 | MS.gene89838:intron | 30.0% | |
| AATACAAGTATTCAATGCTC+AGG | + | chr5.3:11333413-11333432 | None:intergenic | 30.0% | |
| AATGCTCAGGATAAGTAAAT+GGG | + | chr5.3:11333400-11333419 | None:intergenic | 30.0% | |
| AATTAATAGCATTTAGTGCC+TGG | + | chr5.3:11334263-11334282 | None:intergenic | 30.0% | |
| ACTGGATTAAAAGAACCTTT+GGG | + | chr5.3:11333664-11333683 | None:intergenic | 30.0% | |
| ATTAAATAACAACTTGGCAG+CGG | - | chr5.3:11332911-11332930 | MS.gene89838:intron | 30.0% | |
| ATTCTTTGTGGTTGTTTACT+TGG | - | chr5.3:11334236-11334255 | MS.gene89838:intron | 30.0% | |
| CATAAATAGGATAGGCTTAT+TGG | + | chr5.3:11332568-11332587 | None:intergenic | 30.0% | |
| GGATTCATTGTGATAAGAAA+TGG | - | chr5.3:11334294-11334313 | MS.gene89838:intron | 30.0% | |
| GGCACTAAATGCTATTAATT+TGG | - | chr5.3:11334263-11334282 | MS.gene89838:intron | 30.0% | |
| GTTCAATTTCCCATATCAAT+TGG | - | chr5.3:11334353-11334372 | MS.gene89838:intron | 30.0% | |
| TACTGGATTAAAAGAACCTT+TGG | + | chr5.3:11333665-11333684 | None:intergenic | 30.0% | |
| TATCATTGCTCTTATCAATG+AGG | - | chr5.3:11333741-11333760 | MS.gene89838:intron | 30.0% | |
| TGGTTTATGATAGAACACTA+AGG | - | chr5.3:11333299-11333318 | MS.gene89838:CDS | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr5.3:11333180-11333199 | MS.gene89838:CDS | 30.0% | |
| TTAATTCATGACAGGAAACT+TGG | + | chr5.3:11332892-11332911 | None:intergenic | 30.0% | |
| TTATACTACTACGTGTTGTA+TGG | - | chr5.3:11332956-11332975 | MS.gene89838:intron | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | + | chr5.3:11333179-11333198 | None:intergenic | 30.0% | |
| TTGTATGGTCCTTTGAATTT+CGG | - | chr5.3:11332288-11332307 | MS.gene89838:CDS | 30.0% | |
| ! | AAGGTTCTTTTAATCCAGTA+AGG | - | chr5.3:11333665-11333684 | MS.gene89838:intron | 30.0% |
| ! | AAGTTTTCAATTGCACTATG+CGG | - | chr5.3:11332742-11332761 | MS.gene89838:intron | 30.0% |
| ! | AGGTTCTTTTAATCCAGTAA+GGG | - | chr5.3:11333666-11333685 | MS.gene89838:intron | 30.0% |
| ! | CTTTTCACATAGATCAAGAA+AGG | + | chr5.3:11334190-11334209 | None:intergenic | 30.0% |
| ! | GAAAATAGGCTTAGATGTTT+TGG | - | chr5.3:11333127-11333146 | MS.gene89838:intron | 30.0% |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | chr5.3:11333238-11333257 | None:intergenic | 30.0% |
| !! | TAGAGAAGTTGGTAGAAAAT+AGG | - | chr5.3:11333113-11333132 | MS.gene89838:intron | 30.0% |
| !! | TTTTAAGTACAATGTCCGAT+TGG | - | chr5.3:11334121-11334140 | MS.gene89838:intron | 30.0% |
| !!! | TTCTCCAAACTTCTTGTTTT+GGG | - | chr5.3:11333965-11333984 | MS.gene89838:intron | 30.0% |
| AAACTTCAATCTCCATTGCT+AGG | + | chr5.3:11334447-11334466 | None:intergenic | 35.0% | |
| AACCCGCATCAGTAATATAA+AGG | + | chr5.3:11332807-11332826 | None:intergenic | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr5.3:11333183-11333202 | MS.gene89838:CDS | 35.0% | |
| AATGCAGTATGTAGTTGTAG+TGG | - | chr5.3:11332669-11332688 | MS.gene89838:intron | 35.0% | |
| ACAAACTAGACACTTGTTTG+TGG | + | chr5.3:11334027-11334046 | None:intergenic | 35.0% | |
| AGAATGCATATCAAGACTCA+TGG | + | chr5.3:11333946-11333965 | None:intergenic | 35.0% | |
| AGCAATGATACAAACAGTTG+AGG | + | chr5.3:11333731-11333750 | None:intergenic | 35.0% | |
| ATCTCACTGGAAATCAGTAA+TGG | + | chr5.3:11332868-11332887 | None:intergenic | 35.0% | |
| CAACAATGATATTGTTGGAG+TGG | - | chr5.3:11334582-11334601 | MS.gene89838:CDS | 35.0% | |
| CAATGCTCAGGATAAGTAAA+TGG | + | chr5.3:11333401-11333420 | None:intergenic | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr5.3:11333260-11333279 | None:intergenic | 35.0% | |
| GATACGGCTAAAATACCAAT+CGG | + | chr5.3:11334139-11334158 | None:intergenic | 35.0% | |
| GATCCTGATAACATCTTCAA+GGG | + | chr5.3:11333460-11333479 | None:intergenic | 35.0% | |
| GGTGAGGAGAATATAAATCA+TGG | + | chr5.3:11332847-11332866 | None:intergenic | 35.0% | |
| TAAAACCACAATCCTAGCAA+TGG | - | chr5.3:11334432-11334451 | MS.gene89838:intron | 35.0% | |
| TAGGATAGGCTTATTGGTAT+TGG | + | chr5.3:11332562-11332581 | None:intergenic | 35.0% | |
| TAGTTGGAGGATTCAGAATT+CGG | - | chr5.3:11332329-11332348 | MS.gene89838:CDS | 35.0% | |
| TATCCCCAAAACAAGAAGTT+TGG | + | chr5.3:11333972-11333991 | None:intergenic | 35.0% | |
| TCAAGGGAAGAACTCATAAA+GGG | - | chr5.3:11332223-11332242 | MS.gene89838:CDS | 35.0% | |
| TCTACCAACTTCTCTACTAT+AGG | + | chr5.3:11333109-11333128 | None:intergenic | 35.0% | |
| TGATCCTGATAACATCTTCA+AGG | + | chr5.3:11333461-11333480 | None:intergenic | 35.0% | |
| TGTATGGTCCTTTGAATTTC+GGG | - | chr5.3:11332289-11332308 | MS.gene89838:CDS | 35.0% | |
| TGTGAAGATGAACAAGCAAT+TGG | - | chr5.3:11333538-11333557 | MS.gene89838:intron | 35.0% | |
| TTCAAGGGAAGAACTCATAA+AGG | - | chr5.3:11332222-11332241 | MS.gene89838:CDS | 35.0% | |
| TTCTCTACAGTCTACAAAAC+TGG | - | chr5.3:11333995-11334014 | MS.gene89838:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr5.3:11333279-11333298 | MS.gene89838:CDS | 35.0% |
| ! | GCTATTAATTTGGGTGATAG+TGG | - | chr5.3:11334273-11334292 | MS.gene89838:intron | 35.0% |
| !! | CTTCTCCAAACTTCTTGTTT+TGG | - | chr5.3:11333964-11333983 | MS.gene89838:intron | 35.0% |
| !! | GTTTTGTTGATTGCAGGTTA+AGG | - | chr5.3:11333805-11333824 | MS.gene89838:intron | 35.0% |
| !!! | AAGTCAGTTTTGTTGATTGC+AGG | - | chr5.3:11333799-11333818 | MS.gene89838:intron | 35.0% |
| !!! | TCTCCAAACTTCTTGTTTTG+GGG | - | chr5.3:11333966-11333985 | MS.gene89838:intron | 35.0% |
| AAAGAGGTAGAGAAAGACCT+AGG | - | chr5.3:11333218-11333237 | MS.gene89838:CDS | 40.0% | |
| AACATCTCCCAGAATAGCAT+TGG | + | chr5.3:11332136-11332155 | None:intergenic | 40.0% | |
| AAGCCCTTGAAGATGTTATC+AGG | - | chr5.3:11333454-11333473 | MS.gene89838:CDS | 40.0% | |
| AATCTCCATTGCTAGGATTG+TGG | + | chr5.3:11334440-11334459 | None:intergenic | 40.0% | |
| ACTGGAAATCAGTAATGGTG+AGG | + | chr5.3:11332863-11332882 | None:intergenic | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | - | chr5.3:11333062-11333081 | MS.gene89838:intron | 40.0% | |
| AGCACCTATAGTAGAGAAGT+TGG | - | chr5.3:11333102-11333121 | MS.gene89838:intron | 40.0% | |
| AGGATTAGGAATGACACAGT+GGG | - | chr5.3:11333076-11333095 | MS.gene89838:intron | 40.0% | |
| AGTTGGAGGATTCAGAATTC+GGG | - | chr5.3:11332330-11332349 | MS.gene89838:CDS | 40.0% | |
| ATCATTGTTGCTGGAACAGA+TGG | - | chr5.3:11334541-11334560 | MS.gene89838:CDS | 40.0% | |
| ATTTCCCATATCAATTGGCG+AGG | - | chr5.3:11334358-11334377 | MS.gene89838:intron | 40.0% | |
| CAAGATTTCACAAAGCATGC+TGG | - | chr5.3:11332192-11332211 | MS.gene89838:CDS | 40.0% | |
| CAAGTTTGCCTCCATCAAAT+CGG | + | chr5.3:11334738-11334757 | None:intergenic | 40.0% | |
| CTACTACGTGTTGTATGGTA+CGG | - | chr5.3:11332961-11332980 | MS.gene89838:intron | 40.0% | |
| GAAGGCTCACTCAAAAACAA+AGG | - | chr5.3:11333696-11333715 | MS.gene89838:intron | 40.0% | |
| GATATTGTTGGAGTGGTTGT+AGG | - | chr5.3:11334589-11334608 | MS.gene89838:CDS | 40.0% | |
| GCCTTCAGTGAATCAAGATA+CGG | + | chr5.3:11334155-11334174 | None:intergenic | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr5.3:11333267-11333286 | MS.gene89838:CDS | 40.0% | |
| GTCGAGAAATTCTTTGTCCA+CGG | + | chr5.3:11332369-11332388 | None:intergenic | 40.0% | |
| TAGACACTTGTTTGTGGTAC+AGG | + | chr5.3:11334021-11334040 | None:intergenic | 40.0% | |
| TAGGATTAGGAATGACACAG+TGG | - | chr5.3:11333075-11333094 | MS.gene89838:intron | 40.0% | |
| TCACCTTCCAATGCTATTCT+GGG | - | chr5.3:11332126-11332145 | MS.gene89838:CDS | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | + | chr5.3:11333170-11333189 | None:intergenic | 40.0% | |
| TGTAAGACACGACAACTGTT+AGG | + | chr5.3:11334765-11334784 | None:intergenic | 40.0% | |
| TTACCTACCACATCCAGATA+AGG | - | chr5.3:11333483-11333502 | MS.gene89838:intron | 40.0% | |
| TTCACCTTCCAATGCTATTC+TGG | - | chr5.3:11332125-11332144 | MS.gene89838:CDS | 40.0% | |
| TTTCCAGTTGTTCATCAGGA+GGG | + | chr5.3:11332449-11332468 | None:intergenic | 40.0% | |
| ! | ATCTTATTCTGCTTGCTGCT+TGG | - | chr5.3:11332389-11332408 | MS.gene89838:CDS | 40.0% |
| ! | GAGTTTTCCAGTTGTTCATC+AGG | + | chr5.3:11332453-11332472 | None:intergenic | 40.0% |
| ! | TCACTCAAAAACAAAGGCGT+TGG | - | chr5.3:11333702-11333721 | MS.gene89838:intron | 40.0% |
| ! | TTTTCCAGTTGTTCATCAGG+AGG | + | chr5.3:11332450-11332469 | None:intergenic | 40.0% |
| !! | CACTCAAAAACAAAGGCGTT+GGG | - | chr5.3:11333703-11333722 | MS.gene89838:intron | 40.0% |
| !! | GAGTATGGATACCGATTTGA+TGG | - | chr5.3:11334724-11334743 | MS.gene89838:CDS | 40.0% |
| !! | GTTCCACTTTTGATGCTAGT+TGG | - | chr5.3:11332313-11332332 | MS.gene89838:CDS | 40.0% |
| !! | TATGGATACCGATTTGATGG+AGG | - | chr5.3:11334727-11334746 | MS.gene89838:CDS | 40.0% |
| ACTCATAAAGGGTTTGTGCG+AGG | - | chr5.3:11332234-11332253 | MS.gene89838:CDS | 45.0% | |
| ACTGGAAAACTCCTCCACTT+TGG | - | chr5.3:11332461-11332480 | MS.gene89838:intron | 45.0% | |
| AGAGCTAGGTAGATCACCTT+CGG | + | chr5.3:11334391-11334410 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr5.3:11333192-11333211 | MS.gene89838:CDS | 45.0% | |
| ATCTTCTGAGCAGTTGCTTG+TGG | + | chr5.3:11334637-11334656 | None:intergenic | 45.0% | |
| ATGATATCTCCTGGAGCAAC+AGG | + | chr5.3:11334526-11334545 | None:intergenic | 45.0% | |
| CACGTACATGTTAGCCAAAG+TGG | + | chr5.3:11332478-11332497 | None:intergenic | 45.0% | |
| CACTTACTTGACTCTCGTGT+TGG | + | chr5.3:11333006-11333025 | None:intergenic | 45.0% | |
| CAGGAAACTTGGTATCTCAC+TGG | + | chr5.3:11332881-11332900 | None:intergenic | 45.0% | |
| CATGCTGGTGTGTACTTCAA+GGG | - | chr5.3:11332207-11332226 | MS.gene89838:CDS | 45.0% | |
| CCAGCAACAATGATATCTCC+TGG | + | chr5.3:11334535-11334554 | None:intergenic | 45.0% | |
| CCAGGAGATATCATTGTTGC+TGG | - | chr5.3:11334532-11334551 | MS.gene89838:CDS | 45.0% | |
| CCTCCAACTAGCATCAAAAG+TGG | + | chr5.3:11332319-11332338 | None:intergenic | 45.0% | |
| CGAGAGTCAAGTAAGTGTAG+CGG | - | chr5.3:11333009-11333028 | MS.gene89838:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | + | chr5.3:11333169-11333188 | None:intergenic | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr5.3:11333202-11333221 | MS.gene89838:CDS | 45.0% | |
| GATGAGTGGTAAGACTAGAC+AGG | - | chr5.3:11333051-11333070 | MS.gene89838:intron | 45.0% | |
| GATTAGGAATGACACAGTGG+GGG | - | chr5.3:11333078-11333097 | MS.gene89838:intron | 45.0% | |
| GCAGTATGTAGTTGTAGTGG+TGG | - | chr5.3:11332672-11332691 | MS.gene89838:intron | 45.0% | |
| GCCGTATCTTGATTCACTGA+AGG | - | chr5.3:11334151-11334170 | MS.gene89838:intron | 45.0% | |
| GCTTCATGCATACTGAACAC+TGG | - | chr5.3:11333849-11333868 | MS.gene89838:intron | 45.0% | |
| GGAATTGGCTACAAGTTCCT+GGG | + | chr5.3:11333620-11333639 | None:intergenic | 45.0% | |
| GGACCATACAAAACCTGTTG+CGG | + | chr5.3:11332279-11332298 | None:intergenic | 45.0% | |
| GGATTAGGAATGACACAGTG+GGG | - | chr5.3:11333077-11333096 | MS.gene89838:intron | 45.0% | |
| GGTGCAACTAGAGCTAGATT+AGG | - | chr5.3:11334610-11334629 | MS.gene89838:CDS | 45.0% | |
| GTACATGTTAGCCAAAGTGG+AGG | + | chr5.3:11332475-11332494 | None:intergenic | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | - | chr5.3:11333056-11333075 | MS.gene89838:intron | 45.0% | |
| TCAAGAGCAGCAGCTGAAAA+TGG | + | chr5.3:11334706-11334725 | None:intergenic | 45.0% | |
| TCGAATTGCTCTTGCGGAAT+TGG | + | chr5.3:11333635-11333654 | None:intergenic | 45.0% | |
| TGCTCAGAAGATAGCAGCAT+TGG | - | chr5.3:11334645-11334664 | MS.gene89838:CDS | 45.0% | |
| TGTGGTTGTTTACTTGGTCC+AGG | - | chr5.3:11334242-11334261 | MS.gene89838:intron | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr5.3:11332969-11332988 | MS.gene89838:intron | 45.0% | |
| TTCCTCTCGAATTGCTCTTG+CGG | + | chr5.3:11333641-11333660 | None:intergenic | 45.0% | |
| TTTACAGTACCTGTTGCTCC+AGG | - | chr5.3:11334514-11334533 | MS.gene89838:CDS | 45.0% | |
| ! | AAGTAAGTGTAGCGGAGATG+AGG | - | chr5.3:11333017-11333036 | MS.gene89838:intron | 45.0% |
| ! | CAGAATTCGGGTTTGCTTCA+TGG | - | chr5.3:11332342-11332361 | MS.gene89838:CDS | 45.0% |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr5.3:11332970-11332989 | MS.gene89838:intron | 45.0% |
| ! | TCTCCCAGAATAGCATTGGA+AGG | + | chr5.3:11332132-11332151 | None:intergenic | 45.0% |
| !! | AGACCGCAACAGGTTTTGTA+TGG | - | chr5.3:11332273-11332292 | MS.gene89838:CDS | 45.0% |
| !! | ATTGGTGTTGCAGATGGTGT+TGG | - | chr5.3:11333556-11333575 | MS.gene89838:intron | 45.0% |
| !! | CAAGCAATTGGTGTTGCAGA+TGG | - | chr5.3:11333550-11333569 | MS.gene89838:intron | 45.0% |
| !! | CCACTTTTGATGCTAGTTGG+AGG | - | chr5.3:11332316-11332335 | MS.gene89838:CDS | 45.0% |
| !! | GCAGATGTTGGTGTTAATGC+GGG | - | chr5.3:11333586-11333605 | MS.gene89838:intron | 45.0% |
| !! | GGCAGATGTTGGTGTTAATG+CGG | - | chr5.3:11333585-11333604 | MS.gene89838:intron | 45.0% |
| !! | TCCAGTAAGGGTGTTAGAGA+AGG | - | chr5.3:11333678-11333697 | MS.gene89838:intron | 45.0% |
| AACTTTACCTCGCCAGAGCT+AGG | + | chr5.3:11334405-11334424 | None:intergenic | 50.0% | |
| AAGTCCCCTGTTCAACAACG+CGG | - | chr5.3:11334330-11334349 | MS.gene89838:intron | 50.0% | |
| ACTAAGTGGGATCGGCTACA+TGG | + | chr5.3:11333336-11333355 | None:intergenic | 50.0% | |
| AGCGAGCTCTTGACACGAAA+AGG | - | chr5.3:11334674-11334693 | MS.gene89838:CDS | 50.0% | |
| ATCCAGATAAGGTGGCGACT+GGG | - | chr5.3:11333494-11333513 | MS.gene89838:intron | 50.0% | |
| ATGTAGCCGATCCCACTTAG+TGG | - | chr5.3:11333335-11333354 | MS.gene89838:CDS | 50.0% | |
| CAAGCCTTACCCCACTAAGT+GGG | + | chr5.3:11333349-11333368 | None:intergenic | 50.0% | |
| CCACCTTATCTGGATGTGGT+AGG | + | chr5.3:11333489-11333508 | None:intergenic | 50.0% | |
| CCATATCAATTGGCGAGGAG+CGG | - | chr5.3:11334363-11334382 | MS.gene89838:intron | 50.0% | |
| CCTACCACATCCAGATAAGG+TGG | - | chr5.3:11333486-11333505 | MS.gene89838:intron | 50.0% | |
| CGCTCCTCGCCAATTGATAT+GGG | + | chr5.3:11334365-11334384 | None:intergenic | 50.0% | |
| CGGAATTGGCTACAAGTTCC+TGG | + | chr5.3:11333621-11333640 | None:intergenic | 50.0% | |
| CTTACCCCACTAAGTGGGAT+CGG | + | chr5.3:11333344-11333363 | None:intergenic | 50.0% | |
| GAAGGTGATCTACCTAGCTC+TGG | - | chr5.3:11334390-11334409 | MS.gene89838:intron | 50.0% | |
| GAGTTTGAGAAGACCGCAAC+AGG | - | chr5.3:11332263-11332282 | MS.gene89838:CDS | 50.0% | |
| GCAATTCGAGAGGAACCCAA+AGG | - | chr5.3:11333646-11333665 | MS.gene89838:intron | 50.0% | |
| GCATGCTGGTGTGTACTTCA+AGG | - | chr5.3:11332206-11332225 | MS.gene89838:CDS | 50.0% | |
| GCCTTCTCTAACACCCTTAC+TGG | + | chr5.3:11333682-11333701 | None:intergenic | 50.0% | |
| GTGGAACGCCCGAAATTCAA+AGG | + | chr5.3:11332300-11332319 | None:intergenic | 50.0% | |
| TCAGCTGCTGCTCTTGAGTA+TGG | - | chr5.3:11334709-11334728 | MS.gene89838:CDS | 50.0% | |
| TGAACCCGCGTTGTTGAACA+GGG | + | chr5.3:11334338-11334357 | None:intergenic | 50.0% | |
| TGTAGCCGATCCCACTTAGT+GGG | - | chr5.3:11333336-11333355 | MS.gene89838:CDS | 50.0% | |
| TTCCGCAAGAGCAATTCGAG+AGG | - | chr5.3:11333636-11333655 | MS.gene89838:intron | 50.0% | |
| TTGAACCCGCGTTGTTGAAC+AGG | + | chr5.3:11334339-11334358 | None:intergenic | 50.0% | |
| ! | TATTCTGCTTGCTGCTTGGC+TGG | - | chr5.3:11332393-11332412 | MS.gene89838:CDS | 50.0% |
| AGGATGTTGCGCTGGATGAG+TGG | - | chr5.3:11333037-11333056 | MS.gene89838:intron | 55.0% | |
| AGTCCCCTGTTCAACAACGC+GGG | - | chr5.3:11334331-11334350 | MS.gene89838:intron | 55.0% | |
| CAGCCCTCCTGATGAACAAC+TGG | - | chr5.3:11332443-11332462 | MS.gene89838:intron | 55.0% | |
| CAGTTGTTCATCAGGAGGGC+TGG | + | chr5.3:11332445-11332464 | None:intergenic | 55.0% | |
| CATCCAGATAAGGTGGCGAC+TGG | - | chr5.3:11333493-11333512 | MS.gene89838:intron | 55.0% | |
| CCAAGCCTTACCCCACTAAG+TGG | + | chr5.3:11333350-11333369 | None:intergenic | 55.0% | |
| CCACTTAGTGGGGTAAGGCT+TGG | - | chr5.3:11333347-11333366 | MS.gene89838:CDS | 55.0% | |
| CCGCTCCTCGCCAATTGATA+TGG | + | chr5.3:11334366-11334385 | None:intergenic | 55.0% | |
| CGATCCCACTTAGTGGGGTA+AGG | - | chr5.3:11333342-11333361 | MS.gene89838:CDS | 55.0% | |
| GAACCCGCGTTGTTGAACAG+GGG | + | chr5.3:11334337-11334356 | None:intergenic | 55.0% | |
| GCACTATGCGGCTACAGTTG+CGG | - | chr5.3:11332754-11332773 | MS.gene89838:intron | 55.0% | |
| GTAGCCGATCCCACTTAGTG+GGG | - | chr5.3:11333337-11333356 | MS.gene89838:CDS | 55.0% | |
| GTCGCCACCTTATCTGGATG+TGG | + | chr5.3:11333493-11333512 | None:intergenic | 55.0% | |
| TAATGCGGGACTGTATGCCC+AGG | - | chr5.3:11333600-11333619 | MS.gene89838:intron | 55.0% | |
| TCCAGATAAGGTGGCGACTG+GGG | - | chr5.3:11333495-11333514 | MS.gene89838:intron | 55.0% | |
| ! | GGTGTTGCAGATGGTGTTGG+TGG | - | chr5.3:11333559-11333578 | MS.gene89838:intron | 55.0% |
| !! | GTATGGTACGGAGTGTTGGG+CGG | - | chr5.3:11332973-11332992 | MS.gene89838:intron | 55.0% |
| !! | TGATCTACCTAGCTCTGGCG+AGG | - | chr5.3:11334395-11334414 | MS.gene89838:intron | 55.0% |
| !! | TGCAGATGGTGTTGGTGGCT+GGG | - | chr5.3:11333564-11333583 | MS.gene89838:intron | 55.0% |
| !! | TTGCAGATGGTGTTGGTGGC+TGG | - | chr5.3:11333563-11333582 | MS.gene89838:intron | 55.0% |
| CCAGATAAGGTGGCGACTGG+GGG | - | chr5.3:11333496-11333515 | MS.gene89838:intron | 60.0% | |
| CGGAGATGAGGATGTTGCGC+TGG | - | chr5.3:11333029-11333048 | MS.gene89838:intron | 60.0% | |
| CTACAGTTGCGGCCGTGATG+TGG | - | chr5.3:11332765-11332784 | MS.gene89838:intron | 60.0% | |
| GGAGCCCTGCAACCACATCA+CGG | + | chr5.3:11332780-11332799 | None:intergenic | 60.0% | |
| ! | CGGGTTTGCTTCATGGACCG+TGG | - | chr5.3:11332349-11332368 | MS.gene89838:CDS | 60.0% |
| !! | GTTGGTGGCTGGGCAGATGT+TGG | - | chr5.3:11333574-11333593 | MS.gene89838:intron | 60.0% |
| CCCCCAGTCGCCACCTTATC+TGG | + | chr5.3:11333499-11333518 | None:intergenic | 65.0% | |
| GCGGCCGTGATGTGGTTGCA+GGG | - | chr5.3:11332773-11332792 | MS.gene89838:intron | 65.0% | |
| TAAGGTGGCGACTGGGGGAG+AGG | - | chr5.3:11333501-11333520 | MS.gene89838:intron | 65.0% | |
| TGCGGCCGTGATGTGGTTGC+AGG | - | chr5.3:11332772-11332791 | MS.gene89838:intron | 65.0% | |
| ! | TTGGCGAGGAGCGGTACCGA+AGG | - | chr5.3:11334372-11334391 | MS.gene89838:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 11332117 | 11334807 | 11332117 | ID=MS.gene89838 |
| chr5.3 | mRNA | 11332117 | 11334807 | 11332117 | ID=MS.gene89838.t1;Parent=MS.gene89838 |
| chr5.3 | exon | 11334434 | 11334807 | 11334434 | ID=MS.gene89838.t1.exon1;Parent=MS.gene89838.t1 |
| chr5.3 | CDS | 11334434 | 11334807 | 11334434 | ID=cds.MS.gene89838.t1;Parent=MS.gene89838.t1 |
| chr5.3 | exon | 11333162 | 11333486 | 11333162 | ID=MS.gene89838.t1.exon2;Parent=MS.gene89838.t1 |
| chr5.3 | CDS | 11333162 | 11333486 | 11333162 | ID=cds.MS.gene89838.t1;Parent=MS.gene89838.t1 |
| chr5.3 | exon | 11332508 | 11332660 | 11332508 | ID=MS.gene89838.t1.exon3;Parent=MS.gene89838.t1 |
| chr5.3 | CDS | 11332508 | 11332660 | 11332508 | ID=cds.MS.gene89838.t1;Parent=MS.gene89838.t1 |
| chr5.3 | exon | 11332117 | 11332413 | 11332117 | ID=MS.gene89838.t1.exon4;Parent=MS.gene89838.t1 |
| chr5.3 | CDS | 11332117 | 11332413 | 11332117 | ID=cds.MS.gene89838.t1;Parent=MS.gene89838.t1 |
| Gene Sequence |
| Protein sequence |
