Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90217.t1 | XP_003608387.1 | 97.6 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 7.00E-238 | 832.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90217.t1 | Q8H183 | 80.6 | 408 | 73 | 1 | 4 | 411 | 6 | 407 | 1.3e-200 | 700.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90217.t1 | G7JV36 | 97.6 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 5.0e-238 | 832.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049424 | MS.gene90217 | 0.842601 | 2.34E-58 | -1.69E-46 |
| MS.gene050384 | MS.gene90217 | 0.810309 | 1.23E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene90217 | 0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene90217 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene053188 | MS.gene90217 | 0.802649 | 5.07E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene90217 | 0.994178 | 3.58E-205 | -1.69E-46 |
| MS.gene058008 | MS.gene90217 | 0.826564 | 2.53E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene90217 | 0.829665 | 4.53E-55 | -1.69E-46 |
| MS.gene058054 | MS.gene90217 | 0.818982 | 1.48E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene90217 | 0.806665 | 7.37E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene90217 | 0.81834 | 2.06E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene90217 | 0.854431 | 1.24E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90217.t1 | MTR_4g093570 | 97.561 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 0.0 | 838 |
| MS.gene90217.t1 | MTR_4g093580 | 85.714 | 413 | 57 | 1 | 1 | 411 | 1 | 413 | 0.0 | 750 |
| MS.gene90217.t1 | MTR_4g093580 | 87.097 | 372 | 48 | 0 | 40 | 411 | 9 | 380 | 0.0 | 692 |
| MS.gene90217.t1 | MTR_4g093580 | 87.313 | 268 | 34 | 0 | 144 | 411 | 1 | 268 | 0.0 | 505 |
| MS.gene90217.t1 | MTR_2g086600 | 28.364 | 275 | 177 | 6 | 123 | 389 | 30 | 292 | 5.91e-26 | 107 |
| MS.gene90217.t1 | MTR_6g034725 | 82.927 | 41 | 7 | 0 | 180 | 220 | 1 | 41 | 1.74e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90217.t1 | AT5G64370 | 80.637 | 408 | 73 | 1 | 4 | 411 | 6 | 407 | 0.0 | 685 |
| MS.gene90217.t1 | AT2G27450 | 28.986 | 276 | 174 | 8 | 123 | 389 | 31 | 293 | 5.40e-26 | 107 |
| MS.gene90217.t1 | AT2G27450 | 28.832 | 274 | 173 | 8 | 125 | 389 | 60 | 320 | 2.11e-25 | 105 |
| MS.gene90217.t1 | AT2G27450 | 30.303 | 231 | 132 | 5 | 171 | 389 | 1 | 214 | 1.16e-23 | 98.6 |
| MS.gene90217.t1 | AT5G12040 | 23.762 | 303 | 184 | 11 | 96 | 385 | 90 | 358 | 2.10e-11 | 65.5 |
Find 108 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAACACTGCCGTCGTAAT+TGG | 0.183164 | 4.2:+19846703 | MS.gene90217:CDS |
| GAGAGAGCTGTAGCAGATTC+TGG | 0.218580 | 4.2:-19845641 | None:intergenic |
| CCAAAAGCTAGCCAATTTAA+AGG | 0.249204 | 4.2:-19846968 | None:intergenic |
| CCTTTAAATTGGCTAGCTTT+TGG | 0.257247 | 4.2:+19846968 | MS.gene90217:CDS |
| GTAGGCACCATCCTTTAAAT+TGG | 0.259784 | 4.2:+19846957 | MS.gene90217:CDS |
| ATGACTTGAGGCTCAAATTC+TGG | 0.264920 | 4.2:-19847560 | None:intergenic |
| CCAAATGCTGTTTCAAATAC+AGG | 0.269155 | 4.2:-19846908 | None:intergenic |
| TTGCCATCACCAGATGTAAA+TGG | 0.271319 | 4.2:-19847326 | None:intergenic |
| GGGAATCACGGCAATATAAT+TGG | 0.276293 | 4.2:+19846724 | MS.gene90217:CDS |
| AAACCAGCACACGCAGATTT+TGG | 0.292452 | 4.2:+19847347 | MS.gene90217:CDS |
| TTCACATCTCTCTCAAGAAT+TGG | 0.306659 | 4.2:-19846664 | None:intergenic |
| CACCATCTTTATCACGTAAC+AGG | 0.314327 | 4.2:+19847417 | MS.gene90217:CDS |
| AGTCCCCAACTCTTGGAATA+TGG | 0.318877 | 4.2:-19846844 | None:intergenic |
| CCTGTATTTGAAACAGCATT+TGG | 0.321930 | 4.2:+19846908 | MS.gene90217:CDS |
| GAAGTCAATCGTTTGCTTAC+CGG | 0.328217 | 4.2:+19845581 | MS.gene90217:CDS |
| GAACCAGCAGCATCAATAAT+TGG | 0.344011 | 4.2:-19846391 | None:intergenic |
| CCCAACAACTGCTCACTTTG+TGG | 0.348484 | 4.2:+19846336 | MS.gene90217:CDS |
| ATTGATGCTGCTGGTTCATC+GGG | 0.349034 | 4.2:+19846397 | MS.gene90217:CDS |
| ATAAAACAACGAACCTCTAT+TGG | 0.350893 | 4.2:-19847058 | None:intergenic |
| TTGCTTCAATCAACCGGGTT+GGG | 0.362357 | 4.2:+19847285 | MS.gene90217:CDS |
| CCTACCATAACATATATTAA+TGG | 0.364600 | 4.2:-19846939 | None:intergenic |
| CAATGAGAGCACATATTATA+TGG | 0.366751 | 4.2:+19846868 | MS.gene90217:CDS |
| TCCAACGATGGTTCTATTTG+TGG | 0.375589 | 4.2:+19845285 | MS.gene90217:CDS |
| ATTGCCATTAATATATGTTA+TGG | 0.379087 | 4.2:+19846935 | MS.gene90217:CDS |
| TCACCAGATGTAAATGGATT+GGG | 0.386036 | 4.2:-19847320 | None:intergenic |
| TCTTAAACCGCATCATTTCC+AGG | 0.390604 | 4.2:+19845341 | MS.gene90217:CDS |
| TATTGATGCTGCTGGTTCAT+CGG | 0.405269 | 4.2:+19846396 | MS.gene90217:CDS |
| ACTTTGTTGCTTCAATCAAC+CGG | 0.408788 | 4.2:+19847279 | MS.gene90217:CDS |
| TCACATCTCTCTCAAGAATT+GGG | 0.410904 | 4.2:-19846663 | None:intergenic |
| TTAAGATCTCTTATGAAGTA+AGG | 0.417246 | 4.2:-19847591 | None:intergenic |
| CAGGCAATATAAAGACAAAT+GGG | 0.420095 | 4.2:+19847478 | MS.gene90217:CDS |
| GCAGGCAATATAAAGACAAA+TGG | 0.433044 | 4.2:+19847477 | MS.gene90217:CDS |
| AGAGAGCTGTAGCAGATTCT+GGG | 0.435033 | 4.2:-19845640 | None:intergenic |
| ACTCGTATCGTGCAGTCATT+CGG | 0.435404 | 4.2:-19847505 | None:intergenic |
| AAGTCAATCGTTTGCTTACC+GGG | 0.436307 | 4.2:+19845582 | MS.gene90217:CDS |
| GGAACACTGCCGTCGTAATT+GGG | 0.441423 | 4.2:+19846704 | MS.gene90217:CDS |
| TTCCCCAATCCATTTACATC+TGG | 0.449318 | 4.2:+19847317 | MS.gene90217:CDS |
| TCATTGAAGTCCCCAACTCT+TGG | 0.451173 | 4.2:-19846851 | None:intergenic |
| AGAACCATATTCCAAGAGTT+GGG | 0.459086 | 4.2:+19846840 | MS.gene90217:intron |
| TATTATATGGAAGGAAATAC+TGG | 0.461685 | 4.2:+19846881 | MS.gene90217:CDS |
| ATCACCAGATGTAAATGGAT+TGG | 0.462321 | 4.2:-19847321 | None:intergenic |
| AGTTCACCAACGGTGGCAGC+AGG | 0.464830 | 4.2:-19847019 | None:intergenic |
| TTTGTTGATTCTCCATCAGC+AGG | 0.469168 | 4.2:-19846595 | None:intergenic |
| CAGAACCATATTCCAAGAGT+TGG | 0.474049 | 4.2:+19846839 | MS.gene90217:intron |
| TCCACAAAGTGAGCAGTTGT+TGG | 0.476086 | 4.2:-19846337 | None:intergenic |
| TGAACCTATGTGGCCAATAG+AGG | 0.477225 | 4.2:+19847045 | MS.gene90217:CDS |
| GAACCTCGAGTTGTGAGGGT+TGG | 0.495984 | 4.2:+19846289 | MS.gene90217:CDS |
| CAAATGCTGTTTCAAATACA+GGG | 0.500838 | 4.2:-19846907 | None:intergenic |
| GTTGCTTCAATCAACCGGGT+TGG | 0.501321 | 4.2:+19847284 | MS.gene90217:CDS |
| GAGCCAATTATTGATGCTGC+TGG | 0.502901 | 4.2:+19846388 | MS.gene90217:CDS |
| TTGCTTACCGGGCTTAATTG+TGG | 0.511919 | 4.2:+19845593 | MS.gene90217:CDS |
| CCATTAATATATGTTATGGT+AGG | 0.513345 | 4.2:+19846939 | MS.gene90217:CDS |
| CGAACCTCTATTGGCCACAT+AGG | 0.516696 | 4.2:-19847049 | None:intergenic |
| TCCCGTGTACAAAAGGCAAA+TGG | 0.518582 | 4.2:-19846547 | None:intergenic |
| ACATGGATCTTAACTTGTGC+AGG | 0.523148 | 4.2:+19847459 | MS.gene90217:CDS |
| TAAGATCTCTTATGAAGTAA+GGG | 0.530932 | 4.2:-19847590 | None:intergenic |
| GATGGTGTGCAGGATGCATC+TGG | 0.531632 | 4.2:-19847401 | None:intergenic |
| TAATTTGATTGCAGGAAGCA+TGG | 0.533298 | 4.2:+19846518 | MS.gene90217:intron |
| CTTTGTTGCTTCAATCAACC+GGG | 0.534469 | 4.2:+19847280 | MS.gene90217:CDS |
| TATCCTTGAGAAGATGATGA+AGG | 0.543490 | 4.2:-19845317 | None:intergenic |
| TTCCCTTCATCATCTTCTCA+AGG | 0.544283 | 4.2:+19845314 | MS.gene90217:CDS |
| TTCAACCCTGCTGCCACCGT+TGG | 0.546662 | 4.2:+19847013 | MS.gene90217:CDS |
| GAGAGCACATATTATATGGA+AGG | 0.557147 | 4.2:+19846872 | MS.gene90217:CDS |
| TGACCAAAATCTGCGTGTGC+TGG | 0.559199 | 4.2:-19847350 | None:intergenic |
| AAATAGAACCATCGTTGGAA+AGG | 0.568254 | 4.2:-19845281 | None:intergenic |
| TGAACCATGGAGAGGTTATG+TGG | 0.571388 | 4.2:+19846683 | MS.gene90217:CDS |
| TCTTATGAAGTAAGGGGTCA+CGG | 0.579111 | 4.2:-19847583 | None:intergenic |
| AAGAGAACCTCGAGTTGTGA+GGG | 0.579546 | 4.2:+19846285 | MS.gene90217:CDS |
| CCACAAAGTGAGCAGTTGTT+GGG | 0.579558 | 4.2:-19846336 | None:intergenic |
| AAGCTAGCCAATTTAAAGGA+TGG | 0.586492 | 4.2:-19846964 | None:intergenic |
| GCCACAAATAGAACCATCGT+TGG | 0.590523 | 4.2:-19845286 | None:intergenic |
| AATCCATTTACATCTGGTGA+TGG | 0.592464 | 4.2:+19847323 | MS.gene90217:CDS |
| ATCCTTGAGAAGATGATGAA+GGG | 0.596320 | 4.2:-19845316 | None:intergenic |
| AAAGTGAGCAGTTGTTGGGA+TGG | 0.597586 | 4.2:-19846332 | None:intergenic |
| CAACTCAACCTTTCCAACGA+TGG | 0.598188 | 4.2:+19845273 | MS.gene90217:CDS |
| TAAGAGAACCTCGAGTTGTG+AGG | 0.598332 | 4.2:+19846284 | MS.gene90217:CDS |
| ACGTGATAAAGATGGTGTGC+AGG | 0.598654 | 4.2:-19847411 | None:intergenic |
| GAGATGGAGAAGTCTCAAAA+CGG | 0.600165 | 4.2:+19845237 | None:intergenic |
| TGATGCTGCTGGTTCATCGG+GGG | 0.604615 | 4.2:+19846399 | MS.gene90217:CDS |
| GCCGTCGTAATTGGGAATCA+CGG | 0.610219 | 4.2:+19846712 | MS.gene90217:CDS |
| TATAATTGGAATACACAGGA+AGG | 0.612226 | 4.2:+19846738 | MS.gene90217:CDS |
| CTTTGCAAAGAAGTATAACA+TGG | 0.612813 | 4.2:+19846630 | MS.gene90217:CDS |
| CACCAGATGTAAATGGATTG+GGG | 0.615020 | 4.2:-19847319 | None:intergenic |
| TCTTTATCACGTAACAGGGA+TGG | 0.617255 | 4.2:+19847422 | MS.gene90217:CDS |
| AAACCAACCCTCACAACTCG+AGG | 0.620062 | 4.2:-19846292 | None:intergenic |
| AAGGGGTCACGGATGACTTG+AGG | 0.621650 | 4.2:-19847572 | None:intergenic |
| GCAATATAATTGGAATACAC+AGG | 0.623995 | 4.2:+19846734 | MS.gene90217:CDS |
| TTTGTACACGGGAGAAAAGG+TGG | 0.624689 | 4.2:+19846557 | MS.gene90217:CDS |
| GGAATGTCTCAGTCCCAACC+CGG | 0.625592 | 4.2:-19847298 | None:intergenic |
| GAATTTGCAGAACCTGCTGA+TGG | 0.628090 | 4.2:+19846583 | MS.gene90217:CDS |
| AAGATCTCTTATGAAGTAAG+GGG | 0.629006 | 4.2:-19847589 | None:intergenic |
| ACAGCTCTCTCTGTCAAACA+TGG | 0.630470 | 4.2:+19845653 | MS.gene90217:CDS |
| TGTTCCACATAACCTCTCCA+TGG | 0.634118 | 4.2:-19846687 | None:intergenic |
| GAACCATATTCCAAGAGTTG+GGG | 0.634849 | 4.2:+19846841 | MS.gene90217:intron |
| CTTGAGAGAGATGTGAACCA+TGG | 0.640207 | 4.2:+19846670 | MS.gene90217:CDS |
| TTGATGCTGCTGGTTCATCG+GGG | 0.643399 | 4.2:+19846398 | MS.gene90217:CDS |
| TGGCTTATTAGTAACAGACA+TGG | 0.657372 | 4.2:+19847442 | MS.gene90217:CDS |
| TGCACGATACGAGTTGTATG+CGG | 0.660405 | 4.2:+19847514 | MS.gene90217:CDS |
| GTTCACCAACGGTGGCAGCA+GGG | 0.664314 | 4.2:-19847018 | None:intergenic |
| TCCCTGTTACGTGATAAAGA+TGG | 0.671678 | 4.2:-19847419 | None:intergenic |
| GCCGTGATTCCCAATTACGA+CGG | 0.672036 | 4.2:-19846713 | None:intergenic |
| AGGTTCACTGAGTTCACCAA+CGG | 0.675482 | 4.2:-19847029 | None:intergenic |
| ACCATCTTTATCACGTAACA+GGG | 0.675551 | 4.2:+19847418 | MS.gene90217:CDS |
| AGAATGACCTGGAAATGATG+CGG | 0.682019 | 4.2:-19845348 | None:intergenic |
| TTCACTGAGTTCACCAACGG+TGG | 0.688022 | 4.2:-19847026 | None:intergenic |
| AGGCAATATAAAGACAAATG+GGG | 0.695987 | 4.2:+19847479 | MS.gene90217:CDS |
| GAGAGATGTGAACCATGGAG+AGG | 0.699125 | 4.2:+19846675 | MS.gene90217:CDS |
| GTGAACTCAGTGAACCTATG+TGG | 0.733745 | 4.2:+19847035 | MS.gene90217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAATAATGATAATAAT+TGG | - | chr4.2:19845383-19845402 | None:intergenic | 10.0% |
| !! | ATTATATTATTCAATCTTCA+TGG | + | chr4.2:19845494-19845513 | MS.gene90217:intron | 15.0% |
| !! | TATATAAAAATAAACACTGT+AGG | - | chr4.2:19846500-19846519 | None:intergenic | 15.0% |
| !!! | TTTTTATATAATTTGATTGC+AGG | + | chr4.2:19846510-19846529 | MS.gene90217:intron | 15.0% |
| !! | ATTGCCATTAATATATGTTA+TGG | + | chr4.2:19846935-19846954 | MS.gene90217:CDS | 20.0% |
| !! | CATTATTACTATATCAGTAT+CGG | + | chr4.2:19845391-19845410 | MS.gene90217:intron | 20.0% |
| !! | TTGACTAAACAATAGAAAAT+TGG | + | chr4.2:19847191-19847210 | MS.gene90217:intron | 20.0% |
| !!! | CTTATTTCTTATTTAAGCTA+TGG | + | chr4.2:19846191-19846210 | MS.gene90217:intron | 20.0% |
| ! | AGAAAATTGGCATGATTATA+TGG | + | chr4.2:19847204-19847223 | MS.gene90217:intron | 25.0% |
| ! | CCATTAATATATGTTATGGT+AGG | + | chr4.2:19846939-19846958 | MS.gene90217:CDS | 25.0% |
| ! | CCTACCATAACATATATTAA+TGG | - | chr4.2:19846942-19846961 | None:intergenic | 25.0% |
| ! | TAAATAACATAACATGATCC+AGG | - | chr4.2:19845447-19845466 | None:intergenic | 25.0% |
| ! | TAAGATCTCTTATGAAGTAA+GGG | - | chr4.2:19847593-19847612 | None:intergenic | 25.0% |
| ! | TATTATATGGAAGGAAATAC+TGG | + | chr4.2:19846881-19846900 | MS.gene90217:CDS | 25.0% |
| ! | TCTAATGAACACAAAACATT+TGG | + | chr4.2:19846816-19846835 | MS.gene90217:intron | 25.0% |
| ! | TTAAGATCTCTTATGAAGTA+AGG | - | chr4.2:19847594-19847613 | None:intergenic | 25.0% |
| ! | TTGTTTCCAACAATGTTTAA+CGG | + | chr4.2:19845904-19845923 | MS.gene90217:intron | 25.0% |
| !! | AATCTTTCCTTTTTCTTGTA+TGG | + | chr4.2:19846081-19846100 | MS.gene90217:intron | 25.0% |
| !! | TTGTTTAGTCAATTTTCTGT+AGG | - | chr4.2:19847183-19847202 | None:intergenic | 25.0% |
| !!! | ATTTTAAGTTTACTTGTCTC+AGG | + | chr4.2:19846231-19846250 | MS.gene90217:intron | 25.0% |
| !!! | TATAGGTGTTATTGTTTTTC+AGG | + | chr4.2:19847229-19847248 | MS.gene90217:intron | 25.0% |
| AAGATCTCTTATGAAGTAAG+GGG | - | chr4.2:19847592-19847611 | None:intergenic | 30.0% | |
| AAGTGAATTGTATTCATACC+TGG | - | chr4.2:19845688-19845707 | None:intergenic | 30.0% | |
| AATAAACACTGTAGGATTTC+TGG | - | chr4.2:19846492-19846511 | None:intergenic | 30.0% | |
| ACAACAACCATACAAGAAAA+AGG | - | chr4.2:19846091-19846110 | None:intergenic | 30.0% | |
| AGAAACAATAATCAGCAGAA+AGG | - | chr4.2:19847107-19847126 | None:intergenic | 30.0% | |
| AGAAATAAGTTTCAATGCAG+AGG | - | chr4.2:19846180-19846199 | None:intergenic | 30.0% | |
| AGGCAATATAAAGACAAATG+GGG | + | chr4.2:19847479-19847498 | MS.gene90217:CDS | 30.0% | |
| AGTGAATTGTATTCATACCT+GGG | - | chr4.2:19845687-19845706 | None:intergenic | 30.0% | |
| ATAAAACAACGAACCTCTAT+TGG | - | chr4.2:19847061-19847080 | None:intergenic | 30.0% | |
| ATTTAAGCTATGGTATTCGT+TGG | + | chr4.2:19846201-19846220 | MS.gene90217:intron | 30.0% | |
| CAGGCAATATAAAGACAAAT+GGG | + | chr4.2:19847478-19847497 | MS.gene90217:CDS | 30.0% | |
| CGATCATTCAATCCATATTT+CGG | - | chr4.2:19845976-19845995 | None:intergenic | 30.0% | |
| GCAATATAATTGGAATACAC+AGG | + | chr4.2:19846734-19846753 | MS.gene90217:CDS | 30.0% | |
| GTTGTCTATCAAATTATCGT+CGG | + | chr4.2:19846106-19846125 | MS.gene90217:intron | 30.0% | |
| TAACAGGAAGTGAAATTACT+TGG | + | chr4.2:19845867-19845886 | MS.gene90217:intron | 30.0% | |
| TATAATTGGAATACACAGGA+AGG | + | chr4.2:19846738-19846757 | MS.gene90217:CDS | 30.0% | |
| TGTTTCCAACAATGTTTAAC+GGG | + | chr4.2:19845905-19845924 | MS.gene90217:intron | 30.0% | |
| TTCATTAGATAGCTGAAAGA+CGG | - | chr4.2:19846805-19846824 | None:intergenic | 30.0% | |
| TTTCACTTCCTGTTAAACAT+TGG | - | chr4.2:19845862-19845881 | None:intergenic | 30.0% | |
| ! | ATATATGACTTTGACTTTCC+TGG | + | chr4.2:19845426-19845445 | MS.gene90217:intron | 30.0% |
| ! | CAATGAGAGCACATATTATA+TGG | + | chr4.2:19846868-19846887 | MS.gene90217:CDS | 30.0% |
| ! | CTTTGCAAAGAAGTATAACA+TGG | + | chr4.2:19846630-19846649 | MS.gene90217:CDS | 30.0% |
| ! | TTTTCACTCTTTCCTAACTA+GGG | + | chr4.2:19846051-19846070 | MS.gene90217:intron | 30.0% |
| ! | TTTTTCACTCTTTCCTAACT+AGG | + | chr4.2:19846050-19846069 | MS.gene90217:intron | 30.0% |
| !! | CAAATGCTGTTTCAAATACA+GGG | - | chr4.2:19846910-19846929 | None:intergenic | 30.0% |
| !! | GGTTCGTTGTTTTATATTGA+TGG | + | chr4.2:19847066-19847085 | MS.gene90217:intron | 30.0% |
| !!! | GCAGATTTTGGTCATTTTTA+TGG | + | chr4.2:19847359-19847378 | MS.gene90217:CDS | 30.0% |
| !!! | TCTCAAAAAGTGCCTTTTTT+TGG | - | chr4.2:19846363-19846382 | None:intergenic | 30.0% |
| AAATAGAACCATCGTTGGAA+AGG | - | chr4.2:19845284-19845303 | None:intergenic | 35.0% | |
| AACATACTATGCTTGCAAGT+AGG | + | chr4.2:19846424-19846443 | MS.gene90217:intron | 35.0% | |
| AAGCTAGCCAATTTAAAGGA+TGG | - | chr4.2:19846967-19846986 | None:intergenic | 35.0% | |
| AATCCATTTACATCTGGTGA+TGG | + | chr4.2:19847323-19847342 | MS.gene90217:CDS | 35.0% | |
| ACCATCTTTATCACGTAACA+GGG | + | chr4.2:19847418-19847437 | MS.gene90217:CDS | 35.0% | |
| AGAACCATATTCCAAGAGTT+GGG | + | chr4.2:19846840-19846859 | MS.gene90217:intron | 35.0% | |
| AGATTAATTGTCCCCTAGTT+AGG | - | chr4.2:19846066-19846085 | None:intergenic | 35.0% | |
| ATCACCAGATGTAAATGGAT+TGG | - | chr4.2:19847324-19847343 | None:intergenic | 35.0% | |
| ATCCTTGAGAAGATGATGAA+GGG | - | chr4.2:19845319-19845338 | None:intergenic | 35.0% | |
| CCAAAAGCTAGCCAATTTAA+AGG | - | chr4.2:19846971-19846990 | None:intergenic | 35.0% | |
| CTTTCTACTTCTGCTTCTAA+TGG | + | chr4.2:19846774-19846793 | MS.gene90217:intron | 35.0% | |
| GAAGCAGAAGTAGAAAGTTT+AGG | - | chr4.2:19846771-19846790 | None:intergenic | 35.0% | |
| GCAGGCAATATAAAGACAAA+TGG | + | chr4.2:19847477-19847496 | MS.gene90217:CDS | 35.0% | |
| GGCATGATTATATGGCTTAT+AGG | + | chr4.2:19847212-19847231 | MS.gene90217:intron | 35.0% | |
| TAATTTGATTGCAGGAAGCA+TGG | + | chr4.2:19846518-19846537 | MS.gene90217:intron | 35.0% | |
| TATCCTTGAGAAGATGATGA+AGG | - | chr4.2:19845320-19845339 | None:intergenic | 35.0% | |
| TCACATCTCTCTCAAGAATT+GGG | - | chr4.2:19846666-19846685 | None:intergenic | 35.0% | |
| TCACTTTGTGGACCAAAAAA+AGG | + | chr4.2:19846348-19846367 | MS.gene90217:CDS | 35.0% | |
| TCATTAGATAGCTGAAAGAC+GGG | - | chr4.2:19846804-19846823 | None:intergenic | 35.0% | |
| TGGCTTATTAGTAACAGACA+TGG | + | chr4.2:19847442-19847461 | MS.gene90217:CDS | 35.0% | |
| TGTTTCCACCAATGTTTAAC+AGG | + | chr4.2:19845851-19845870 | MS.gene90217:intron | 35.0% | |
| TTCACATCTCTCTCAAGAAT+TGG | - | chr4.2:19846667-19846686 | None:intergenic | 35.0% | |
| TTTCACTCTTTCCTAACTAG+GGG | + | chr4.2:19846052-19846071 | MS.gene90217:intron | 35.0% | |
| ! | AATCTTCATGGAAAGTGCAT+TGG | + | chr4.2:19845506-19845525 | MS.gene90217:intron | 35.0% |
| ! | ACTTTGTTGCTTCAATCAAC+CGG | + | chr4.2:19847279-19847298 | MS.gene90217:CDS | 35.0% |
| ! | CCTGTATTTGAAACAGCATT+TGG | + | chr4.2:19846908-19846927 | MS.gene90217:CDS | 35.0% |
| ! | GAGAGCACATATTATATGGA+AGG | + | chr4.2:19846872-19846891 | MS.gene90217:CDS | 35.0% |
| ! | TCACCAGATGTAAATGGATT+GGG | - | chr4.2:19847323-19847342 | None:intergenic | 35.0% |
| !! | CCAAATGCTGTTTCAAATAC+AGG | - | chr4.2:19846911-19846930 | None:intergenic | 35.0% |
| !!! | CCTTTAAATTGGCTAGCTTT+TGG | + | chr4.2:19846968-19846987 | MS.gene90217:CDS | 35.0% |
| !!! | TGCTGTTGCTTTTTAAGTCA+TGG | + | chr4.2:19845771-19845790 | MS.gene90217:intron | 35.0% |
| AAGTCAATCGTTTGCTTACC+GGG | + | chr4.2:19845582-19845601 | MS.gene90217:CDS | 40.0% | |
| AGAATGACCTGGAAATGATG+CGG | - | chr4.2:19845351-19845370 | None:intergenic | 40.0% | |
| ATGACTTGAGGCTCAAATTC+TGG | - | chr4.2:19847563-19847582 | None:intergenic | 40.0% | |
| CACCATCTTTATCACGTAAC+AGG | + | chr4.2:19847417-19847436 | MS.gene90217:CDS | 40.0% | |
| CACTTCCCGTTAAACATTGT+TGG | - | chr4.2:19845913-19845932 | None:intergenic | 40.0% | |
| CACTTCCTGTTAAACATTGG+TGG | - | chr4.2:19845859-19845878 | None:intergenic | 40.0% | |
| CAGAACCATATTCCAAGAGT+TGG | + | chr4.2:19846839-19846858 | MS.gene90217:intron | 40.0% | |
| GAACCAGCAGCATCAATAAT+TGG | - | chr4.2:19846394-19846413 | None:intergenic | 40.0% | |
| GAACCATATTCCAAGAGTTG+GGG | + | chr4.2:19846841-19846860 | MS.gene90217:intron | 40.0% | |
| GAAGTCAATCGTTTGCTTAC+CGG | + | chr4.2:19845581-19845600 | MS.gene90217:CDS | 40.0% | |
| GGGAATCACGGCAATATAAT+TGG | + | chr4.2:19846724-19846743 | MS.gene90217:CDS | 40.0% | |
| GTAGGCACCATCCTTTAAAT+TGG | + | chr4.2:19846957-19846976 | MS.gene90217:CDS | 40.0% | |
| TCCCTGTTACGTGATAAAGA+TGG | - | chr4.2:19847422-19847441 | None:intergenic | 40.0% | |
| TCTTAAACCGCATCATTTCC+AGG | + | chr4.2:19845341-19845360 | MS.gene90217:CDS | 40.0% | |
| TCTTATGAAGTAAGGGGTCA+CGG | - | chr4.2:19847586-19847605 | None:intergenic | 40.0% | |
| TCTTTATCACGTAACAGGGA+TGG | + | chr4.2:19847422-19847441 | MS.gene90217:CDS | 40.0% | |
| TTCCCCAATCCATTTACATC+TGG | + | chr4.2:19847317-19847336 | MS.gene90217:CDS | 40.0% | |
| TTCCCTTCATCATCTTCTCA+AGG | + | chr4.2:19845314-19845333 | MS.gene90217:CDS | 40.0% | |
| TTGCCATCACCAGATGTAAA+TGG | - | chr4.2:19847329-19847348 | None:intergenic | 40.0% | |
| ! | CACTTTTCCACAATTAAGCC+CGG | - | chr4.2:19845603-19845622 | None:intergenic | 40.0% |
| ! | CTTTGTTGCTTCAATCAACC+GGG | + | chr4.2:19847280-19847299 | MS.gene90217:CDS | 40.0% |
| ! | TCCAACGATGGTTCTATTTG+TGG | + | chr4.2:19845285-19845304 | MS.gene90217:CDS | 40.0% |
| !! | ACATGGATCTTAACTTGTGC+AGG | + | chr4.2:19847459-19847478 | MS.gene90217:CDS | 40.0% |
| !! | CACCAGATGTAAATGGATTG+GGG | - | chr4.2:19847322-19847341 | None:intergenic | 40.0% |
| !! | CTTGGATTGGTTAAACGAGA+TGG | + | chr4.2:19846139-19846158 | MS.gene90217:intron | 40.0% |
| !! | TATTGATGCTGCTGGTTCAT+CGG | + | chr4.2:19846396-19846415 | MS.gene90217:CDS | 40.0% |
| !! | TGCCATTTGCCTTTTGTACA+CGG | + | chr4.2:19846545-19846564 | MS.gene90217:CDS | 40.0% |
| !! | TTTGTTGATTCTCCATCAGC+AGG | - | chr4.2:19846598-19846617 | None:intergenic | 40.0% |
| !!! | AGCTTTTGGCTTAAATGGTG+CGG | + | chr4.2:19846982-19847001 | MS.gene90217:CDS | 40.0% |
| !!! | TGGCTAGCTTTTGGCTTAAA+TGG | + | chr4.2:19846977-19846996 | MS.gene90217:CDS | 40.0% |
| AAAGTGAGCAGTTGTTGGGA+TGG | - | chr4.2:19846335-19846354 | None:intergenic | 45.0% | |
| ACAGCTCTCTCTGTCAAACA+TGG | + | chr4.2:19845653-19845672 | MS.gene90217:CDS | 45.0% | |
| ACGTGATAAAGATGGTGTGC+AGG | - | chr4.2:19847414-19847433 | None:intergenic | 45.0% | |
| ACTCGTATCGTGCAGTCATT+CGG | - | chr4.2:19847508-19847527 | None:intergenic | 45.0% | |
| AGAGAGCTGTAGCAGATTCT+GGG | - | chr4.2:19845643-19845662 | None:intergenic | 45.0% | |
| AGGTTCACTGAGTTCACCAA+CGG | - | chr4.2:19847032-19847051 | None:intergenic | 45.0% | |
| AGTCCCCAACTCTTGGAATA+TGG | - | chr4.2:19846847-19846866 | None:intergenic | 45.0% | |
| ATCGTCGGAATCTATGAGCT+TGG | + | chr4.2:19846121-19846140 | MS.gene90217:intron | 45.0% | |
| CAACTCAACCTTTCCAACGA+TGG | + | chr4.2:19845273-19845292 | MS.gene90217:CDS | 45.0% | |
| CCAACTCAAAAGAGAGGGTT+CGG | - | chr4.2:19845948-19845967 | None:intergenic | 45.0% | |
| CCACAAAGTGAGCAGTTGTT+GGG | - | chr4.2:19846339-19846358 | None:intergenic | 45.0% | |
| CGGAATCTATGAGCTTGGAT+TGG | + | chr4.2:19846126-19846145 | MS.gene90217:intron | 45.0% | |
| CTTGAGAGAGATGTGAACCA+TGG | + | chr4.2:19846670-19846689 | MS.gene90217:CDS | 45.0% | |
| GAATTTGCAGAACCTGCTGA+TGG | + | chr4.2:19846583-19846602 | MS.gene90217:CDS | 45.0% | |
| GAGCCAATTATTGATGCTGC+TGG | + | chr4.2:19846388-19846407 | MS.gene90217:CDS | 45.0% | |
| GCCACAAATAGAACCATCGT+TGG | - | chr4.2:19845289-19845308 | None:intergenic | 45.0% | |
| GGTCTGAAAGAAGAATGACC+TGG | - | chr4.2:19845362-19845381 | None:intergenic | 45.0% | |
| GTGAACTCAGTGAACCTATG+TGG | + | chr4.2:19847035-19847054 | MS.gene90217:CDS | 45.0% | |
| TCATTGAAGTCCCCAACTCT+TGG | - | chr4.2:19846854-19846873 | None:intergenic | 45.0% | |
| TCCACAAAGTGAGCAGTTGT+TGG | - | chr4.2:19846340-19846359 | None:intergenic | 45.0% | |
| TCCCGTGTACAAAAGGCAAA+TGG | - | chr4.2:19846550-19846569 | None:intergenic | 45.0% | |
| TCCTGCCAACTCAAAAGAGA+GGG | - | chr4.2:19845953-19845972 | None:intergenic | 45.0% | |
| TGAACCATGGAGAGGTTATG+TGG | + | chr4.2:19846683-19846702 | MS.gene90217:CDS | 45.0% | |
| TGAACCTATGTGGCCAATAG+AGG | + | chr4.2:19847045-19847064 | MS.gene90217:CDS | 45.0% | |
| TGCACGATACGAGTTGTATG+CGG | + | chr4.2:19847514-19847533 | MS.gene90217:CDS | 45.0% | |
| TGTTCCACATAACCTCTCCA+TGG | - | chr4.2:19846690-19846709 | None:intergenic | 45.0% | |
| TTGCTTACCGGGCTTAATTG+TGG | + | chr4.2:19845593-19845612 | MS.gene90217:CDS | 45.0% | |
| TTGCTTCAATCAACCGGGTT+GGG | + | chr4.2:19847285-19847304 | MS.gene90217:CDS | 45.0% | |
| TTTGTACACGGGAGAAAAGG+TGG | + | chr4.2:19846557-19846576 | MS.gene90217:CDS | 45.0% | |
| ! | AAACCAGCACACGCAGATTT+TGG | + | chr4.2:19847347-19847366 | MS.gene90217:CDS | 45.0% |
| ! | AAGAGAACCTCGAGTTGTGA+GGG | + | chr4.2:19846285-19846304 | MS.gene90217:CDS | 45.0% |
| ! | CCTTTTCTCCCGTGTACAAA+AGG | - | chr4.2:19846557-19846576 | None:intergenic | 45.0% |
| ! | CCTTTTGTACACGGGAGAAA+AGG | + | chr4.2:19846554-19846573 | MS.gene90217:CDS | 45.0% |
| ! | CTATGTGAGTATCGTGTTGC+AGG | + | chr4.2:19845559-19845578 | MS.gene90217:intron | 45.0% |
| ! | GCCATTTGCCTTTTGTACAC+GGG | + | chr4.2:19846546-19846565 | MS.gene90217:CDS | 45.0% |
| ! | TAAGAGAACCTCGAGTTGTG+AGG | + | chr4.2:19846284-19846303 | MS.gene90217:CDS | 45.0% |
| !! | ATTGATGCTGCTGGTTCATC+GGG | + | chr4.2:19846397-19846416 | MS.gene90217:CDS | 45.0% |
| !!! | CAAACATGGTTTTGATGCCC+AGG | + | chr4.2:19845667-19845686 | MS.gene90217:CDS | 45.0% |
| AAACCAACCCTCACAACTCG+AGG | - | chr4.2:19846295-19846314 | None:intergenic | 50.0% | |
| CCCAACAACTGCTCACTTTG+TGG | + | chr4.2:19846336-19846355 | MS.gene90217:CDS | 50.0% | |
| CGAACCTCTATTGGCCACAT+AGG | - | chr4.2:19847052-19847071 | None:intergenic | 50.0% | |
| GAGAGAGCTGTAGCAGATTC+TGG | - | chr4.2:19845644-19845663 | None:intergenic | 50.0% | |
| GAGAGATGTGAACCATGGAG+AGG | + | chr4.2:19846675-19846694 | MS.gene90217:CDS | 50.0% | |
| GAGTTGGCAGGACCGAAATA+TGG | + | chr4.2:19845961-19845980 | MS.gene90217:intron | 50.0% | |
| GCCGTCGTAATTGGGAATCA+CGG | + | chr4.2:19846712-19846731 | MS.gene90217:CDS | 50.0% | |
| GCCGTGATTCCCAATTACGA+CGG | - | chr4.2:19846716-19846735 | None:intergenic | 50.0% | |
| GGAACACTGCCGTCGTAATT+GGG | + | chr4.2:19846704-19846723 | MS.gene90217:CDS | 50.0% | |
| GTCCTGCCAACTCAAAAGAG+AGG | - | chr4.2:19845954-19845973 | None:intergenic | 50.0% | |
| GTTGCTTCAATCAACCGGGT+TGG | + | chr4.2:19847284-19847303 | MS.gene90217:CDS | 50.0% | |
| TGACCAAAATCTGCGTGTGC+TGG | - | chr4.2:19847353-19847372 | None:intergenic | 50.0% | |
| TGGAACACTGCCGTCGTAAT+TGG | + | chr4.2:19846703-19846722 | MS.gene90217:CDS | 50.0% | |
| TTCACTGAGTTCACCAACGG+TGG | - | chr4.2:19847029-19847048 | None:intergenic | 50.0% | |
| !! | CCGAACCCTCTCTTTTGAGT+TGG | + | chr4.2:19845945-19845964 | MS.gene90217:intron | 50.0% |
| !! | TTGATGCTGCTGGTTCATCG+GGG | + | chr4.2:19846398-19846417 | MS.gene90217:CDS | 50.0% |
| !!! | ACCCTCTCTTTTGAGTTGGC+AGG | + | chr4.2:19845949-19845968 | MS.gene90217:intron | 50.0% |
| AAGGGGTCACGGATGACTTG+AGG | - | chr4.2:19847575-19847594 | None:intergenic | 55.0% | |
| GATGGTGTGCAGGATGCATC+TGG | - | chr4.2:19847404-19847423 | None:intergenic | 55.0% | |
| GGAATGTCTCAGTCCCAACC+CGG | - | chr4.2:19847301-19847320 | None:intergenic | 55.0% | |
| ! | GAACCTCGAGTTGTGAGGGT+TGG | + | chr4.2:19846289-19846308 | MS.gene90217:CDS | 55.0% |
| !! | TGATGCTGCTGGTTCATCGG+GGG | + | chr4.2:19846399-19846418 | MS.gene90217:CDS | 55.0% |
| AGTTCACCAACGGTGGCAGC+AGG | - | chr4.2:19847022-19847041 | None:intergenic | 60.0% | |
| GTTCACCAACGGTGGCAGCA+GGG | - | chr4.2:19847021-19847040 | None:intergenic | 60.0% | |
| TTCAACCCTGCTGCCACCGT+TGG | + | chr4.2:19847013-19847032 | MS.gene90217:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19845240 | 19847613 | 19845240 | ID=MS.gene90217 |
| chr4.2 | mRNA | 19845240 | 19847613 | 19845240 | ID=MS.gene90217.t1;Parent=MS.gene90217 |
| chr4.2 | exon | 19845240 | 19845362 | 19845240 | ID=MS.gene90217.t1.exon1;Parent=MS.gene90217.t1 |
| chr4.2 | CDS | 19845240 | 19845362 | 19845240 | ID=cds.MS.gene90217.t1;Parent=MS.gene90217.t1 |
| chr4.2 | exon | 19845581 | 19845688 | 19845581 | ID=MS.gene90217.t1.exon2;Parent=MS.gene90217.t1 |
| chr4.2 | CDS | 19845581 | 19845688 | 19845581 | ID=cds.MS.gene90217.t1;Parent=MS.gene90217.t1 |
| chr4.2 | exon | 19846253 | 19846441 | 19846253 | ID=MS.gene90217.t1.exon3;Parent=MS.gene90217.t1 |
| chr4.2 | CDS | 19846253 | 19846441 | 19846253 | ID=cds.MS.gene90217.t1;Parent=MS.gene90217.t1 |
| chr4.2 | exon | 19846532 | 19846759 | 19846532 | ID=MS.gene90217.t1.exon4;Parent=MS.gene90217.t1 |
| chr4.2 | CDS | 19846532 | 19846759 | 19846532 | ID=cds.MS.gene90217.t1;Parent=MS.gene90217.t1 |
| chr4.2 | exon | 19846842 | 19847066 | 19846842 | ID=MS.gene90217.t1.exon5;Parent=MS.gene90217.t1 |
| chr4.2 | CDS | 19846842 | 19847066 | 19846842 | ID=cds.MS.gene90217.t1;Parent=MS.gene90217.t1 |
| chr4.2 | exon | 19847251 | 19847613 | 19847251 | ID=MS.gene90217.t1.exon6;Parent=MS.gene90217.t1 |
| chr4.2 | CDS | 19847251 | 19847613 | 19847251 | ID=cds.MS.gene90217.t1;Parent=MS.gene90217.t1 |
| Gene Sequence |
| Protein sequence |
