Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90289.t1 | XP_013448863.1 | 97.8 | 460 | 10 | 0 | 1 | 460 | 1 | 460 | 2.00E-257 | 897.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90289.t1 | Q9SR33 | 76.5 | 459 | 103 | 3 | 1 | 457 | 1 | 456 | 4.8e-212 | 738.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90289.t1 | A0A072UAQ5 | 97.8 | 460 | 10 | 0 | 1 | 460 | 1 | 460 | 1.4e-257 | 897.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050883 | MS.gene90289 | 0.804548 | 2.05E-49 | -1.69E-46 |
MS.gene052566 | MS.gene90289 | 0.839097 | 1.94E-57 | -1.69E-46 |
MS.gene053561 | MS.gene90289 | 0.805818 | 1.11E-49 | -1.69E-46 |
MS.gene056311 | MS.gene90289 | 0.800987 | 1.11E-48 | -1.69E-46 |
MS.gene058628 | MS.gene90289 | 0.831206 | 1.90E-55 | -1.69E-46 |
MS.gene058629 | MS.gene90289 | 0.822149 | 2.77E-53 | -1.69E-46 |
MS.gene058630 | MS.gene90289 | 0.830559 | 2.74E-55 | -1.69E-46 |
MS.gene05884 | MS.gene90289 | 0.830645 | 2.61E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90289.t1 | MTR_7g061830 | 98.043 | 460 | 9 | 0 | 1 | 460 | 1 | 460 | 0.0 | 942 |
MS.gene90289.t1 | MTR_4g064110 | 75.336 | 446 | 107 | 2 | 18 | 460 | 12 | 457 | 0.0 | 731 |
MS.gene90289.t1 | MTR_3g073040 | 34.921 | 378 | 220 | 13 | 73 | 439 | 403 | 765 | 1.45e-51 | 186 |
MS.gene90289.t1 | MTR_3g073040 | 34.921 | 378 | 220 | 13 | 73 | 439 | 402 | 764 | 1.72e-51 | 186 |
MS.gene90289.t1 | MTR_3g097270 | 35.054 | 368 | 215 | 12 | 73 | 431 | 379 | 731 | 1.20e-49 | 181 |
MS.gene90289.t1 | MTR_5g459350 | 33.773 | 379 | 223 | 13 | 73 | 439 | 377 | 739 | 3.00e-47 | 174 |
MS.gene90289.t1 | MTR_3g086340 | 33.696 | 368 | 217 | 12 | 75 | 431 | 437 | 788 | 6.52e-45 | 167 |
MS.gene90289.t1 | MTR_4g101410 | 32.979 | 376 | 229 | 11 | 73 | 439 | 160 | 521 | 8.22e-45 | 164 |
MS.gene90289.t1 | MTR_4g101410 | 32.979 | 376 | 229 | 11 | 73 | 439 | 391 | 752 | 8.38e-44 | 164 |
MS.gene90289.t1 | MTR_3g073040 | 41.848 | 184 | 98 | 6 | 73 | 250 | 403 | 583 | 1.31e-31 | 128 |
MS.gene90289.t1 | MTR_3g086340 | 37.912 | 182 | 104 | 6 | 75 | 250 | 437 | 615 | 3.83e-25 | 108 |
MS.gene90289.t1 | MTR_4g127510 | 27.247 | 356 | 207 | 15 | 73 | 408 | 36 | 359 | 5.02e-17 | 82.8 |
MS.gene90289.t1 | MTR_2g037770 | 26.627 | 338 | 212 | 13 | 83 | 408 | 46 | 359 | 1.11e-14 | 75.9 |
MS.gene90289.t1 | MTR_3g054960 | 88.235 | 34 | 4 | 0 | 280 | 313 | 5 | 38 | 8.37e-14 | 66.6 |
MS.gene90289.t1 | MTR_2g037790 | 25.588 | 340 | 206 | 14 | 83 | 404 | 47 | 357 | 8.24e-13 | 70.1 |
MS.gene90289.t1 | MTR_2g037790 | 25.588 | 340 | 206 | 14 | 83 | 404 | 50 | 360 | 8.91e-13 | 70.1 |
MS.gene90289.t1 | MTR_2g037770 | 28.384 | 229 | 151 | 8 | 83 | 303 | 46 | 269 | 1.07e-11 | 65.5 |
MS.gene90289.t1 | MTR_2g037770 | 27.826 | 230 | 153 | 8 | 83 | 304 | 47 | 271 | 2.48e-11 | 65.1 |
MS.gene90289.t1 | MTR_2g037770 | 27.826 | 230 | 153 | 8 | 83 | 304 | 46 | 270 | 3.35e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90289.t1 | AT5G02100 | 78.091 | 461 | 91 | 3 | 1 | 459 | 1 | 453 | 0.0 | 763 |
MS.gene90289.t1 | AT3G09300 | 77.560 | 459 | 98 | 3 | 1 | 457 | 1 | 456 | 0.0 | 757 |
MS.gene90289.t1 | AT5G59420 | 77.333 | 450 | 92 | 3 | 18 | 460 | 11 | 457 | 0.0 | 745 |
MS.gene90289.t1 | AT5G02100 | 81.055 | 417 | 78 | 1 | 43 | 459 | 11 | 426 | 0.0 | 727 |
MS.gene90289.t1 | AT5G02100 | 80.734 | 327 | 54 | 2 | 1 | 325 | 1 | 320 | 0.0 | 563 |
MS.gene90289.t1 | AT4G12460 | 33.155 | 374 | 225 | 11 | 73 | 439 | 135 | 490 | 5.85e-52 | 183 |
MS.gene90289.t1 | AT4G12460 | 33.155 | 374 | 225 | 11 | 73 | 439 | 135 | 490 | 5.85e-52 | 183 |
MS.gene90289.t1 | AT4G12460 | 33.155 | 374 | 225 | 11 | 73 | 439 | 135 | 490 | 5.85e-52 | 183 |
MS.gene90289.t1 | AT4G12460 | 33.155 | 374 | 225 | 11 | 73 | 439 | 324 | 679 | 1.21e-50 | 183 |
MS.gene90289.t1 | AT4G12460 | 33.155 | 374 | 225 | 11 | 73 | 439 | 323 | 678 | 1.49e-50 | 182 |
MS.gene90289.t1 | AT4G12460 | 33.155 | 374 | 225 | 11 | 73 | 439 | 323 | 678 | 1.49e-50 | 182 |
MS.gene90289.t1 | AT4G12460 | 32.791 | 369 | 223 | 11 | 77 | 439 | 1 | 350 | 2.84e-50 | 175 |
MS.gene90289.t1 | AT4G08180 | 34.375 | 384 | 222 | 14 | 69 | 439 | 432 | 798 | 8.49e-50 | 182 |
MS.gene90289.t1 | AT4G08180 | 34.375 | 384 | 222 | 14 | 69 | 439 | 433 | 799 | 8.71e-50 | 182 |
MS.gene90289.t1 | AT4G08180 | 34.375 | 384 | 222 | 14 | 69 | 439 | 433 | 799 | 8.71e-50 | 182 |
MS.gene90289.t1 | AT4G22540 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.41e-49 | 177 |
MS.gene90289.t1 | AT4G22540 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.41e-49 | 177 |
MS.gene90289.t1 | AT4G22540 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.41e-49 | 177 |
MS.gene90289.t1 | AT4G22540 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.41e-49 | 177 |
MS.gene90289.t1 | AT1G13170 | 35.121 | 373 | 213 | 13 | 75 | 435 | 435 | 790 | 8.32e-49 | 179 |
MS.gene90289.t1 | AT4G08180 | 34.375 | 384 | 222 | 14 | 69 | 439 | 432 | 798 | 9.73e-49 | 179 |
MS.gene90289.t1 | AT4G22540 | 32.632 | 380 | 226 | 12 | 73 | 439 | 344 | 706 | 3.05e-48 | 176 |
MS.gene90289.t1 | AT4G22540 | 32.632 | 380 | 226 | 12 | 73 | 439 | 344 | 706 | 3.05e-48 | 176 |
MS.gene90289.t1 | AT2G31030 | 33.770 | 382 | 220 | 15 | 69 | 439 | 122 | 481 | 4.38e-48 | 172 |
MS.gene90289.t1 | AT2G31020 | 34.211 | 380 | 221 | 15 | 69 | 439 | 407 | 766 | 2.37e-47 | 174 |
MS.gene90289.t1 | AT1G13170 | 33.249 | 394 | 213 | 13 | 75 | 435 | 435 | 811 | 8.83e-46 | 170 |
MS.gene90289.t1 | AT4G12460 | 31.206 | 282 | 175 | 9 | 73 | 345 | 323 | 594 | 1.50e-32 | 130 |
MS.gene90289.t1 | AT4G12460 | 31.206 | 282 | 175 | 9 | 73 | 345 | 324 | 595 | 1.57e-32 | 130 |
MS.gene90289.t1 | AT4G25850 | 35.915 | 142 | 82 | 5 | 83 | 218 | 45 | 183 | 1.05e-12 | 69.7 |
MS.gene90289.t1 | AT4G25850 | 36.620 | 142 | 81 | 5 | 83 | 218 | 45 | 183 | 1.38e-12 | 68.2 |
MS.gene90289.t1 | AT4G25850 | 35.915 | 142 | 82 | 5 | 83 | 218 | 147 | 285 | 1.56e-12 | 69.7 |
MS.gene90289.t1 | AT4G25860 | 33.117 | 154 | 94 | 5 | 83 | 230 | 46 | 196 | 2.11e-12 | 68.9 |
MS.gene90289.t1 | AT4G25860 | 33.117 | 154 | 94 | 5 | 83 | 230 | 40 | 190 | 2.24e-12 | 68.9 |
Find 119 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTGGCAATTTGATAATT+TGG | 0.085476 | 7.4:-42343549 | MS.gene90289:CDS |
GCTTCTACTTTCTCCAATTT+TGG | 0.140009 | 7.4:-42348590 | MS.gene90289:CDS |
GCATCTTCAGTTCCTCCTTC+TGG | 0.209164 | 7.4:+42347987 | None:intergenic |
AGCCGAGTTGCCAAGAAATT+TGG | 0.211425 | 7.4:+42346113 | None:intergenic |
TTTCCAGTTATTAGAATCTT+TGG | 0.232137 | 7.4:+42345030 | None:intergenic |
CTGTATATTTACCGTTATAT+TGG | 0.237011 | 7.4:+42343636 | None:intergenic |
CCTGGAAGTGGTTCTCCTTC+AGG | 0.245926 | 7.4:+42344973 | None:intergenic |
AAACTGAAAACCAAATTTCT+TGG | 0.288124 | 7.4:-42346123 | MS.gene90289:CDS |
CTAGAAGCAGTAGTTTGTTT+AGG | 0.290686 | 7.4:+42348644 | None:intergenic |
AGATTCTAATAACTGGAAAA+TGG | 0.294958 | 7.4:-42345026 | MS.gene90289:CDS |
AGACACAGAAGTGCCAAAAT+TGG | 0.298525 | 7.4:+42348577 | None:intergenic |
TTTCAACCGTGTGGCTGGTT+TGG | 0.299374 | 7.4:-42345433 | MS.gene90289:CDS |
TTCAACCGTGTGGCTGGTTT+GGG | 0.306787 | 7.4:-42345432 | MS.gene90289:intron |
AATTGCCAAGGATTGAATTC+TGG | 0.309835 | 7.4:+42343560 | None:intergenic |
GTCTGATGGCAACAACTTCT+TGG | 0.311470 | 7.4:+42343973 | None:intergenic |
TCTGTGTCTAAATCCGTTAC+TGG | 0.317302 | 7.4:-42348563 | MS.gene90289:CDS |
TTCAACACCTTGGGGTGAAT+TGG | 0.318364 | 7.4:-42343666 | MS.gene90289:CDS |
AAACCATTCAATCCAATTCT+TGG | 0.319529 | 7.4:-42346469 | MS.gene90289:CDS |
TGGTTTCCATGTTCGTTGAT+AGG | 0.324794 | 7.4:+42346486 | None:intergenic |
TGATAATTTGGAGGCTGAAT+AGG | 0.326474 | 7.4:-42343537 | None:intergenic |
TGCTCAAGGGCCATTCTATC+AGG | 0.333635 | 7.4:+42343938 | None:intergenic |
GAACCAAAGATTCTAATAAC+TGG | 0.334792 | 7.4:-42345033 | MS.gene90289:CDS |
TGTTAAGCTTGTGCGCAAAA+TGG | 0.342311 | 7.4:+42344011 | None:intergenic |
CCTGAAGGAGAACCACTTCC+AGG | 0.345218 | 7.4:-42344973 | MS.gene90289:CDS |
AGTTGCTGAAACTCCTAAAA+AGG | 0.350695 | 7.4:-42344050 | MS.gene90289:CDS |
ACCATCTAGGAGTGAACTTC+TGG | 0.351260 | 7.4:+42343711 | None:intergenic |
TCTCATCCGCCATATCTAAT+AGG | 0.351722 | 7.4:+42346877 | None:intergenic |
TACAGGAACGGGATAGTTAC+TGG | 0.352770 | 7.4:-42347139 | MS.gene90289:intron |
TTACCTGCTCTTCTCGTTGC+CGG | 0.355589 | 7.4:+42343898 | None:intergenic |
TCATAAGTCTCGCCAAGAAT+TGG | 0.364216 | 7.4:+42346457 | None:intergenic |
CTGGAAGTGGTTCTCCTTCA+GGG | 0.390296 | 7.4:+42344974 | None:intergenic |
ACTTCTGGTTCTTCGCCTCT+CGG | 0.421507 | 7.4:+42343726 | None:intergenic |
ACGAACTTGGATTGATTCAC+CGG | 0.427585 | 7.4:-42345506 | MS.gene90289:CDS |
ACCAGAAGTTCACTCCTAGA+TGG | 0.427680 | 7.4:-42343712 | MS.gene90289:CDS |
TCAGCATGCCCGGCACTCAT+TGG | 0.428818 | 7.4:+42346177 | None:intergenic |
TTTCAGTACTCCTGAGGGAT+TGG | 0.430340 | 7.4:-42348021 | MS.gene90289:intron |
GGAAGTAACTTCAACACCTT+GGG | 0.430491 | 7.4:-42343675 | MS.gene90289:CDS |
TCGCCAAGAATTGGATTGAA+TGG | 0.437574 | 7.4:+42346466 | None:intergenic |
TTGAGCTCAGTGCCTGGAAG+TGG | 0.441386 | 7.4:+42344961 | None:intergenic |
ATTCTTTGTAGCATCGTCAT+TGG | 0.443051 | 7.4:+42347047 | None:intergenic |
AGATGGTGTGACGCTTGATT+TGG | 0.443745 | 7.4:-42345566 | MS.gene90289:CDS |
TGATAGAATGGCCCTTGAGC+AGG | 0.445077 | 7.4:-42343936 | MS.gene90289:CDS |
TCTTGGCGAGACTTATGAAA+TGG | 0.446172 | 7.4:-42346452 | MS.gene90289:CDS |
TGCTGAAGAGGAAGCTAAGA+AGG | 0.456916 | 7.4:-42347967 | MS.gene90289:CDS |
ACCTCTTTGAGCTCAGTGCC+TGG | 0.457360 | 7.4:+42344955 | None:intergenic |
GTACTCTTACCTATTAGATA+TGG | 0.460527 | 7.4:-42346886 | MS.gene90289:CDS |
AACCAAATTTCTTGGCAACT+CGG | 0.462206 | 7.4:-42346115 | MS.gene90289:CDS |
GTCCTGACAAATTTGACTAC+GGG | 0.464111 | 7.4:-42345475 | MS.gene90289:CDS |
ACCGATTTCCATGGCACCAA+TGG | 0.467780 | 7.4:-42348669 | None:intergenic |
TCTGATGGCAACAACTTCTT+GGG | 0.469985 | 7.4:+42343974 | None:intergenic |
TTGGAAGTTTACCAATATAA+CGG | 0.476790 | 7.4:-42343647 | MS.gene90289:CDS |
CAGGGTGACCTATCCGTGTC+CGG | 0.480998 | 7.4:-42343917 | MS.gene90289:CDS |
GTTAAGCTTGTGCGCAAAAT+GGG | 0.484686 | 7.4:+42344012 | None:intergenic |
TTGGCAATTTGATAATTTGG+AGG | 0.489898 | 7.4:-42343546 | MS.gene90289:CDS |
GTAGTTTGTTTAGGATCCAT+TGG | 0.490818 | 7.4:+42348653 | None:intergenic |
TTTAGGATCCATTGGTGCCA+TGG | 0.491784 | 7.4:+42348661 | None:intergenic |
GCATGCCCGGCACTCATTGG+AGG | 0.493510 | 7.4:+42346180 | None:intergenic |
CAACGAGAGTACCTTCCAAC+AGG | 0.496349 | 7.4:+42346081 | None:intergenic |
GCATATACAAGTCTCATGTA+TGG | 0.502072 | 7.4:+42346846 | None:intergenic |
CATATCCATCCACTTCATAT+CGG | 0.502430 | 7.4:+42345073 | None:intergenic |
GCTTCTAGTAGTAGTGGTGG+TGG | 0.508922 | 7.4:-42348629 | MS.gene90289:CDS |
TGTGCGCAAAATGGGTGTAT+TGG | 0.508928 | 7.4:+42344020 | None:intergenic |
CATGTCATTTATAGCAGAGC+AGG | 0.509505 | 7.4:-42346416 | MS.gene90289:intron |
CGAACTTGGATTGATTCACC+GGG | 0.510339 | 7.4:-42345505 | MS.gene90289:CDS |
ATCACCCTCCAATGAGTGCC+GGG | 0.517943 | 7.4:-42346185 | MS.gene90289:CDS |
CATCACCCTCCAATGAGTGC+CGG | 0.526096 | 7.4:-42346186 | MS.gene90289:CDS |
TCGGCTGATGTATATCCTGT+TGG | 0.527162 | 7.4:-42346096 | MS.gene90289:CDS |
ATAGACCAGAATTCAATCCT+TGG | 0.532358 | 7.4:-42343565 | MS.gene90289:CDS |
TCGTCTTCGTCCTGATAGAA+TGG | 0.535385 | 7.4:-42343948 | MS.gene90289:CDS |
TCTCGTTGCCGGACACGGAT+AGG | 0.536153 | 7.4:+42343909 | None:intergenic |
GGTCCTGACAAATTTGACTA+CGG | 0.538233 | 7.4:-42345476 | MS.gene90289:CDS |
GCTCTTCTCGTTGCCGGACA+CGG | 0.540689 | 7.4:+42343904 | None:intergenic |
AGGAAGTAACTTCAACACCT+TGG | 0.547809 | 7.4:-42343676 | MS.gene90289:CDS |
CATGCCCGGCACTCATTGGA+GGG | 0.549295 | 7.4:+42346181 | None:intergenic |
AATGACGATGCTACAAAGAA+TGG | 0.551198 | 7.4:-42347045 | MS.gene90289:CDS |
AGGAACTGAAGATGCTGAAG+AGG | 0.553903 | 7.4:-42347979 | MS.gene90289:CDS |
TGTCCGGCAACGAGAAGAGC+AGG | 0.556678 | 7.4:-42343901 | MS.gene90289:intron |
TCTGTCAGATCAAACCATCT+AGG | 0.561419 | 7.4:+42343698 | None:intergenic |
AAGTCTCATGTATGGATCAT+CGG | 0.565263 | 7.4:+42346854 | None:intergenic |
TTAACAACTTCCAATCCCTC+AGG | 0.574758 | 7.4:+42348011 | None:intergenic |
CTGTGTCTAAATCCGTTACT+GGG | 0.575943 | 7.4:-42348562 | MS.gene90289:intron |
TCCAAATTATCAAATTGCCA+AGG | 0.578229 | 7.4:+42343548 | None:intergenic |
GATAGAATGGCCCTTGAGCA+GGG | 0.578871 | 7.4:-42343935 | MS.gene90289:CDS |
TTGGAAGTTGTTAATCCAGA+AGG | 0.580286 | 7.4:-42348002 | MS.gene90289:CDS |
CGGATAGGTCACCCTGCTCA+AGG | 0.585127 | 7.4:+42343924 | None:intergenic |
GCTGGCCGATATGAAGTGGA+TGG | 0.593394 | 7.4:-42345078 | MS.gene90289:CDS |
TATCAAGTTTGTGACCCTGA+AGG | 0.595390 | 7.4:-42344988 | MS.gene90289:CDS |
TGGCTCTGATATCACATCAA+TGG | 0.599652 | 7.4:-42347096 | MS.gene90289:CDS |
ACTATGCCTATCAACGAACA+TGG | 0.602963 | 7.4:-42346492 | MS.gene90289:CDS |
CTCTTACCTATTAGATATGG+CGG | 0.604056 | 7.4:-42346883 | MS.gene90289:CDS |
GGACGAAGACGAGAGTCTGA+TGG | 0.607644 | 7.4:+42343959 | None:intergenic |
GGATAGGTCACCCTGCTCAA+GGG | 0.609499 | 7.4:+42343925 | None:intergenic |
GAAGTTGTTAATCCAGAAGG+AGG | 0.612155 | 7.4:-42347999 | MS.gene90289:CDS |
ACTACTGCTTCTAGTAGTAG+TGG | 0.614539 | 7.4:-42348635 | MS.gene90289:CDS |
CTGATGTATATCCTGTTGGA+AGG | 0.615522 | 7.4:-42346092 | MS.gene90289:intron |
AAAATGATGCAAAAGTATGT+TGG | 0.618288 | 7.4:-42347116 | MS.gene90289:CDS |
GATGCTACAAAGAATGGCTG+AGG | 0.619746 | 7.4:-42347039 | MS.gene90289:intron |
TAAACTTCCAATTCACCCCA+AGG | 0.625431 | 7.4:+42343659 | None:intergenic |
CGTGTAACACTCAAAAGAGA+TGG | 0.628643 | 7.4:-42345583 | MS.gene90289:CDS |
GCTGAAGAGGAAGCTAAGAA+GGG | 0.629950 | 7.4:-42347966 | MS.gene90289:CDS |
CAGAGCTGGCCGATATGAAG+TGG | 0.634968 | 7.4:-42345082 | MS.gene90289:CDS |
TTTGTCAGGACCATATCCCC+CGG | 0.638714 | 7.4:+42345487 | None:intergenic |
TCCAGGCACTGAGCTCAAAG+AGG | 0.639649 | 7.4:-42344956 | MS.gene90289:intron |
ATAAGAAACATACCCAGTAA+CGG | 0.644588 | 7.4:+42348550 | None:intergenic |
AGGAAGCTAAGAAGGGACGA+TGG | 0.645802 | 7.4:-42347959 | MS.gene90289:CDS |
GAAGGGACGATGGAAAGATG+AGG | 0.648742 | 7.4:-42347949 | MS.gene90289:intron |
ACTGCTTCTAGTAGTAGTGG+TGG | 0.656420 | 7.4:-42348632 | MS.gene90289:CDS |
TCCTGACAAATTTGACTACG+GGG | 0.660297 | 7.4:-42345474 | MS.gene90289:CDS |
AACTTGGATTGATTCACCGG+GGG | 0.663951 | 7.4:-42345503 | MS.gene90289:CDS |
TCATACCCAAACCAGCCACA+CGG | 0.689650 | 7.4:+42345427 | None:intergenic |
CCTGACAAATTTGACTACGG+GGG | 0.696732 | 7.4:-42345473 | MS.gene90289:CDS |
TAGATGGTTTGATCTGACAG+AGG | 0.699389 | 7.4:-42343696 | MS.gene90289:CDS |
CTATAAATGACATGCCACCG+TGG | 0.712560 | 7.4:+42346425 | None:intergenic |
AGCTGAGAAGAGAAACCGAG+AGG | 0.718676 | 7.4:-42343741 | MS.gene90289:CDS |
GAACTTGGATTGATTCACCG+GGG | 0.721206 | 7.4:-42345504 | MS.gene90289:CDS |
ACTTATGAAATGGCTAACCA+CGG | 0.724007 | 7.4:-42346442 | MS.gene90289:CDS |
GAAGTAACTTCAACACCTTG+GGG | 0.735829 | 7.4:-42343674 | MS.gene90289:CDS |
TATGAAATGGCTAACCACGG+TGG | 0.752131 | 7.4:-42346439 | MS.gene90289:CDS |
CAGAACTATCTACAGCAGCG+CGG | 0.791276 | 7.4:+42343609 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAATGATTATATTATATT+AGG | + | chr7.4:42346999-42347018 | None:intergenic | 10.0% |
!!! | ATGTAAATTGTATAATTTTA+AGG | - | chr7.4:42348026-42348045 | MS.gene90289:intron | 10.0% |
!!! | TGATATGTATAATTTTTTAT+TGG | - | chr7.4:42343833-42343852 | MS.gene90289:intron | 10.0% |
!!! | TTTTGTAATTTTTTTTATGT+GGG | - | chr7.4:42343712-42343731 | MS.gene90289:CDS | 10.0% |
!!! | TTTTTGTAATTTTTTTTATG+TGG | - | chr7.4:42343711-42343730 | MS.gene90289:CDS | 10.0% |
!! | AAAAAAATATTAATTGCCAA+TGG | - | chr7.4:42346405-42346424 | MS.gene90289:intron | 15.0% |
!! | AACTTATGAACAAATTATTT+GGG | + | chr7.4:42347907-42347926 | None:intergenic | 15.0% |
!! | AGTTAAGATTATTATATGAA+AGG | + | chr7.4:42346230-42346249 | None:intergenic | 15.0% |
!! | TAACTTATGAACAAATTATT+TGG | + | chr7.4:42347908-42347927 | None:intergenic | 15.0% |
!! | TAATATTTGTGTTGTATTTA+TGG | - | chr7.4:42344430-42344449 | MS.gene90289:intron | 15.0% |
!! | TAGAATATATACTATACAAA+GGG | - | chr7.4:42347593-42347612 | MS.gene90289:intron | 15.0% |
!! | TATTATAGAGACAAAAAAAT+TGG | - | chr7.4:42344589-42344608 | MS.gene90289:intron | 15.0% |
!! | TTAGAATATATACTATACAA+AGG | - | chr7.4:42347592-42347611 | MS.gene90289:intron | 15.0% |
!! | TTTAGTAACTTAAAGTTAAA+AGG | - | chr7.4:42347079-42347098 | MS.gene90289:CDS | 15.0% |
!!! | ATTTAACAAGTTTGAAATTA+TGG | + | chr7.4:42343677-42343696 | None:intergenic | 15.0% |
!!! | ATTTTAAACTGTGTATTATA+TGG | - | chr7.4:42346428-42346447 | MS.gene90289:CDS | 15.0% |
!!! | TTCATCTTTTATTTAAGTTT+GGG | - | chr7.4:42346354-42346373 | MS.gene90289:intron | 15.0% |
!!! | TTTCATCTTTTATTTAAGTT+TGG | - | chr7.4:42346353-42346372 | MS.gene90289:intron | 15.0% |
!! | ATGTTGTACTTCAATTTAAT+CGG | - | chr7.4:42346466-42346485 | MS.gene90289:CDS | 20.0% |
!! | GAATTATTTGAGTAATTTCT+TGG | - | chr7.4:42344082-42344101 | MS.gene90289:intron | 20.0% |
!! | TCAAAAGTAACAAAATGTAT+TGG | + | chr7.4:42346189-42346208 | None:intergenic | 20.0% |
!! | TTAAATTGAAGTACAACATA+CGG | + | chr7.4:42346465-42346484 | None:intergenic | 20.0% |
!! | TTAAATTGGGATTATATAAC+AGG | - | chr7.4:42347480-42347499 | MS.gene90289:intron | 20.0% |
!! | TTATAAAAACAAATTGCTAC+AGG | - | chr7.4:42345983-42346002 | MS.gene90289:intron | 20.0% |
!! | TTTGTTTGAATTCTTAGTTA+TGG | - | chr7.4:42347566-42347585 | MS.gene90289:intron | 20.0% |
!!! | AAAATTAGCAACTTGATTTT+TGG | - | chr7.4:42346668-42346687 | MS.gene90289:intron | 20.0% |
!!! | AAGAATTAGTTGATTCAATT+TGG | + | chr7.4:42347520-42347539 | None:intergenic | 20.0% |
!!! | ATGTATAAATAGCCTTAAAA+CGG | + | chr7.4:42346156-42346175 | None:intergenic | 20.0% |
!!! | CTGTTTTTATCGTAAAAAAA+GGG | - | chr7.4:42347699-42347718 | MS.gene90289:intron | 20.0% |
!!! | CTTAAACTTATTTTTCAGTT+TGG | - | chr7.4:42348420-42348439 | MS.gene90289:intron | 20.0% |
!!! | TCATCTTTTATTTAAGTTTG+GGG | - | chr7.4:42346355-42346374 | MS.gene90289:intron | 20.0% |
!!! | TGTCATGTATTTTTTTACAA+TGG | - | chr7.4:42345885-42345904 | MS.gene90289:intron | 20.0% |
!!! | TGTTTGTTTTTTTGTAATGT+TGG | - | chr7.4:42346501-42346520 | MS.gene90289:CDS | 20.0% |
!!! | TTTTGATGTTTAAGTATTAG+TGG | - | chr7.4:42344047-42344066 | MS.gene90289:CDS | 20.0% |
! | AAAAAATACATGACAAAGAG+AGG | + | chr7.4:42345880-42345899 | None:intergenic | 25.0% |
! | AAACTGAAAACCAAATTTCT+TGG | - | chr7.4:42346074-42346093 | MS.gene90289:intron | 25.0% |
! | AACTGTGTATTATATGGATA+AGG | - | chr7.4:42346434-42346453 | MS.gene90289:CDS | 25.0% |
! | AACTGTTTCATATGAACAAT+AGG | - | chr7.4:42347756-42347775 | MS.gene90289:intron | 25.0% |
! | AGATTCTAATAACTGGAAAA+TGG | - | chr7.4:42347171-42347190 | MS.gene90289:intron | 25.0% |
! | ATGCATAAATAAGAAGTTAC+TGG | + | chr7.4:42346899-42346918 | None:intergenic | 25.0% |
! | ATTAAGATGTTAATCCAAAC+AGG | + | chr7.4:42347619-42347638 | None:intergenic | 25.0% |
! | CATCATTTATCGCAAAAAAA+TGG | + | chr7.4:42346963-42346982 | None:intergenic | 25.0% |
! | CTGTATATTTACCGTTATAT+TGG | + | chr7.4:42348564-42348583 | None:intergenic | 25.0% |
! | GAATACATTTATCTATCTCA+TGG | - | chr7.4:42344941-42344960 | MS.gene90289:intron | 25.0% |
! | GTAGAAATAAGCGATAATTT+AGG | + | chr7.4:42346805-42346824 | None:intergenic | 25.0% |
! | TAATATGTCATGCAAACAAA+TGG | - | chr7.4:42344903-42344922 | MS.gene90289:intron | 25.0% |
! | TGAAACTAATACTTCACATA+TGG | + | chr7.4:42347053-42347072 | None:intergenic | 25.0% |
! | TGCTAAGTATTATCAAATTC+TGG | + | chr7.4:42345547-42345566 | None:intergenic | 25.0% |
! | TTCATTCTTTCATTCCTTAT+TGG | + | chr7.4:42344528-42344547 | None:intergenic | 25.0% |
! | TTGGAAGTTTACCAATATAA+CGG | - | chr7.4:42348550-42348569 | MS.gene90289:intron | 25.0% |
! | TTTCCAGTTATTAGAATCTT+TGG | + | chr7.4:42347170-42347189 | None:intergenic | 25.0% |
!! | AAAATGATGCAAAAGTATGT+TGG | - | chr7.4:42345081-42345100 | MS.gene90289:CDS | 25.0% |
!! | ATACACAGTTTAAAATCCAT+TGG | + | chr7.4:42346424-42346443 | None:intergenic | 25.0% |
!! | ATCAAGTTAAATTTGACTTC+AGG | + | chr7.4:42347543-42347562 | None:intergenic | 25.0% |
!! | TAAAACAGTTTTCTCAATTG+CGG | - | chr7.4:42344708-42344727 | MS.gene90289:intron | 25.0% |
!! | TAATTTCTTGGAGTTTTTGT+TGG | - | chr7.4:42344094-42344113 | MS.gene90289:intron | 25.0% |
!! | TATTGGAATTTGTCCTTTTT+AGG | + | chr7.4:42348163-42348182 | None:intergenic | 25.0% |
!! | TTTTACCTAGAAATCAAGTT+TGG | - | chr7.4:42343941-42343960 | MS.gene90289:CDS | 25.0% |
!!! | AAAAACCCAATTTTGAAAGA+TGG | + | chr7.4:42343801-42343820 | None:intergenic | 25.0% |
!!! | AAACTTATTTTTCAGTTTGG+AGG | - | chr7.4:42348423-42348442 | MS.gene90289:intron | 25.0% |
!!! | ATCAAGTTGCTAATTTTTGT+AGG | + | chr7.4:42346665-42346684 | None:intergenic | 25.0% |
!!! | CATTTCTTTTAGTTTACTTG+TGG | - | chr7.4:42346921-42346940 | MS.gene90289:intron | 25.0% |
!!! | CTATTTTTGTTGTTAGAGAT+GGG | - | chr7.4:42344615-42344634 | MS.gene90289:intron | 25.0% |
!!! | GCTGTTTTTATCGTAAAAAA+AGG | - | chr7.4:42347698-42347717 | MS.gene90289:intron | 25.0% |
!!! | TACAAAGTTTTGTCAAATAG+CGG | + | chr7.4:42344796-42344815 | None:intergenic | 25.0% |
!!! | TATTGGTGTTATTAATACTC+CGG | - | chr7.4:42343850-42343869 | MS.gene90289:intron | 25.0% |
!!! | TCTATTTTTGTTGTTAGAGA+TGG | - | chr7.4:42344614-42344633 | MS.gene90289:intron | 25.0% |
AAACCATTCAATCCAATTCT+TGG | - | chr7.4:42345728-42345747 | MS.gene90289:intron | 30.0% | |
AATGTACAAAAGAACACTTG+AGG | + | chr7.4:42345039-42345058 | None:intergenic | 30.0% | |
ACAAACCAAAGATGTCAAAA+GGG | - | chr7.4:42348364-42348383 | MS.gene90289:intron | 30.0% | |
ACTGAAGAAAGAAAATAAGC+AGG | + | chr7.4:42345819-42345838 | None:intergenic | 30.0% | |
AGAATCCAAACTTGATTTCT+AGG | + | chr7.4:42343949-42343968 | None:intergenic | 30.0% | |
ATAAGAAACATACCCAGTAA+CGG | + | chr7.4:42343650-42343669 | None:intergenic | 30.0% | |
ATCAGACTTTACTTACTGTT+GGG | + | chr7.4:42343912-42343931 | None:intergenic | 30.0% | |
ATCTCACATACACAACATTT+GGG | - | chr7.4:42345619-42345638 | MS.gene90289:intron | 30.0% | |
ATGAATGCAAACCTTGTAAT+TGG | + | chr7.4:42344481-42344500 | None:intergenic | 30.0% | |
ATGTACAAAAGAACACTTGA+GGG | + | chr7.4:42345038-42345057 | None:intergenic | 30.0% | |
CATCTTAATTAAGCGCTTAT+AGG | - | chr7.4:42347630-42347649 | MS.gene90289:intron | 30.0% | |
GAACCAAAGATTCTAATAAC+TGG | - | chr7.4:42347164-42347183 | MS.gene90289:intron | 30.0% | |
GACAAAACAACAGTTAAAAG+AGG | - | chr7.4:42346303-42346322 | MS.gene90289:intron | 30.0% | |
GATGACCATCTTTCAAAATT+GGG | - | chr7.4:42343793-42343812 | MS.gene90289:intron | 30.0% | |
GCATGTAAAATTGGTGAAAT+CGG | + | chr7.4:42345858-42345877 | None:intergenic | 30.0% | |
GTAAATTATGCTGACCAATA+AGG | - | chr7.4:42344511-42344530 | MS.gene90289:intron | 30.0% | |
GTACTCTTACCTATTAGATA+TGG | - | chr7.4:42345311-42345330 | MS.gene90289:intron | 30.0% | |
TACAAACCAAAGATGTCAAA+AGG | - | chr7.4:42348363-42348382 | MS.gene90289:intron | 30.0% | |
TACATTTATCTATCTCATGG+TGG | - | chr7.4:42344944-42344963 | MS.gene90289:intron | 30.0% | |
TATAGAAGTCACCAATTACA+AGG | - | chr7.4:42344467-42344486 | MS.gene90289:intron | 30.0% | |
TATCTCACATACACAACATT+TGG | - | chr7.4:42345618-42345637 | MS.gene90289:intron | 30.0% | |
TCCAAATTATCAAATTGCCA+AGG | + | chr7.4:42348652-42348671 | None:intergenic | 30.0% | |
TGTGTATTATATGGATAAGG+AGG | - | chr7.4:42346437-42346456 | MS.gene90289:CDS | 30.0% | |
TTATCTAATTTCACAGCTCA+TGG | - | chr7.4:42345287-42345306 | MS.gene90289:intron | 30.0% | |
TTCTGTAGTCAGAGAAAATA+TGG | - | chr7.4:42347730-42347749 | MS.gene90289:intron | 30.0% | |
! | AAGTTGCTAATTTTTGTAGG+TGG | + | chr7.4:42346662-42346681 | None:intergenic | 30.0% |
! | AGTGTTCTTTTGTACATTAC+AGG | - | chr7.4:42345041-42345060 | MS.gene90289:CDS | 30.0% |
! | AGTTGCTAATTTTTGTAGGT+GGG | + | chr7.4:42346661-42346680 | None:intergenic | 30.0% |
! | CATGGAAGTGATTATTGTTT+TGG | - | chr7.4:42343771-42343790 | MS.gene90289:intron | 30.0% |
! | TAGTTGATTCAATTTGGCTA+CGG | + | chr7.4:42347514-42347533 | None:intergenic | 30.0% |
! | TCCTTGGCAATTTGATAATT+TGG | - | chr7.4:42348648-42348667 | MS.gene90289:CDS | 30.0% |
! | TCTTTTGTACATTACAGGAA+CGG | - | chr7.4:42345046-42345065 | MS.gene90289:CDS | 30.0% |
! | TTGAATTCTGGTCTATTTTC+AGG | + | chr7.4:42348628-42348647 | None:intergenic | 30.0% |
! | TTGGCAATTTGATAATTTGG+AGG | - | chr7.4:42348651-42348670 | MS.gene90289:CDS | 30.0% |
!! | ACAAAGTTTTGTCAAATAGC+GGG | + | chr7.4:42344795-42344814 | None:intergenic | 30.0% |
!! | GCTTTGGAGATGATTAAATT+GGG | - | chr7.4:42347467-42347486 | MS.gene90289:intron | 30.0% |
!! | TGCTTTGGAGATGATTAAAT+TGG | - | chr7.4:42347466-42347485 | MS.gene90289:intron | 30.0% |
!!! | ATGCTTTGGAAACAACTTTT+AGG | - | chr7.4:42347403-42347422 | MS.gene90289:intron | 30.0% |
!!! | GTATTTTTTTACAATGGCTC+TGG | - | chr7.4:42345891-42345910 | MS.gene90289:intron | 30.0% |
AAACCAAAGATGTCAAAAGG+GGG | - | chr7.4:42348366-42348385 | MS.gene90289:intron | 35.0% | |
AACCAAATTTCTTGGCAACT+CGG | - | chr7.4:42346082-42346101 | MS.gene90289:intron | 35.0% | |
AAGTCTCATGTATGGATCAT+CGG | + | chr7.4:42345346-42345365 | None:intergenic | 35.0% | |
AATGACGATGCTACAAAGAA+TGG | - | chr7.4:42345152-42345171 | MS.gene90289:intron | 35.0% | |
AATTGCCAAGGATTGAATTC+TGG | + | chr7.4:42348640-42348659 | None:intergenic | 35.0% | |
ACTTATGAAATGGCTAACCA+CGG | - | chr7.4:42345755-42345774 | MS.gene90289:intron | 35.0% | |
ACTTCCATGATCTAGCAAAA+GGG | + | chr7.4:42343760-42343779 | None:intergenic | 35.0% | |
AGAATAAGTATTACACCCTC+AGG | + | chr7.4:42346330-42346349 | None:intergenic | 35.0% | |
AGTTGCTGAAACTCCTAAAA+AGG | - | chr7.4:42348147-42348166 | MS.gene90289:intron | 35.0% | |
ATAGACCAGAATTCAATCCT+TGG | - | chr7.4:42348632-42348651 | MS.gene90289:CDS | 35.0% | |
ATTCTTTGTAGCATCGTCAT+TGG | + | chr7.4:42345153-42345172 | None:intergenic | 35.0% | |
CAAACCAAAGATGTCAAAAG+GGG | - | chr7.4:42348365-42348384 | MS.gene90289:intron | 35.0% | |
CAACTCTTTCATCGATGTTA+TGG | - | chr7.4:42347273-42347292 | MS.gene90289:intron | 35.0% | |
CATATCCATCCACTTCATAT+CGG | + | chr7.4:42347127-42347146 | None:intergenic | 35.0% | |
CCTTAAAACGGCAACTAAAA+TGG | + | chr7.4:42346144-42346163 | None:intergenic | 35.0% | |
CTACTAACACAAGCATTTGA+CGG | + | chr7.4:42347879-42347898 | None:intergenic | 35.0% | |
CTCTTACCTATTAGATATGG+CGG | - | chr7.4:42345314-42345333 | MS.gene90289:intron | 35.0% | |
GATCAGACTTTACTTACTGT+TGG | + | chr7.4:42343913-42343932 | None:intergenic | 35.0% | |
GCATATACAAGTCTCATGTA+TGG | + | chr7.4:42345354-42345373 | None:intergenic | 35.0% | |
GGAATGTGCATATTGAAACA+TGG | - | chr7.4:42344636-42344655 | MS.gene90289:intron | 35.0% | |
GGATGACCATCTTTCAAAAT+TGG | - | chr7.4:42343792-42343811 | MS.gene90289:intron | 35.0% | |
TAATGCTGATACGCTTTCTA+AGG | + | chr7.4:42347798-42347817 | None:intergenic | 35.0% | |
TATGTCATGCAAACAAATGG+TGG | - | chr7.4:42344906-42344925 | MS.gene90289:intron | 35.0% | |
TCATTAAGCCTGATATGCTT+TGG | - | chr7.4:42347389-42347408 | MS.gene90289:intron | 35.0% | |
TCTCTGCAATAAGTTGTTCA+AGG | - | chr7.4:42346273-42346292 | MS.gene90289:intron | 35.0% | |
TGGTTAATACTGTAGTGTAG+CGG | + | chr7.4:42345527-42345546 | None:intergenic | 35.0% | |
TTAAGTTTGGGGATTGTTAG+TGG | - | chr7.4:42346366-42346385 | MS.gene90289:intron | 35.0% | |
TTGCAAAGCATATGATGCTT+TGG | - | chr7.4:42347451-42347470 | MS.gene90289:intron | 35.0% | |
TTGGAAGTTGTTAATCCAGA+AGG | - | chr7.4:42344195-42344214 | MS.gene90289:intron | 35.0% | |
! | AGTTGATTCAATTTGGCTAC+GGG | + | chr7.4:42347513-42347532 | None:intergenic | 35.0% |
! | AGTTGTTTCCAAAGCATATC+AGG | + | chr7.4:42347400-42347419 | None:intergenic | 35.0% |
! | ATCTAAAAGAGTGTGCTGTT+AGG | + | chr7.4:42347321-42347340 | None:intergenic | 35.0% |
! | ATTGGCTCAAAAACGATAAC+TGG | + | chr7.4:42345135-42345154 | None:intergenic | 35.0% |
! | CAAAGAGAGGCATGTAAAAT+TGG | + | chr7.4:42345867-42345886 | None:intergenic | 35.0% |
! | CTTTTGTACATTACAGGAAC+GGG | - | chr7.4:42345047-42345066 | MS.gene90289:CDS | 35.0% |
! | GATACAGTGTAGTGGAATTT+AGG | + | chr7.4:42345602-42345621 | None:intergenic | 35.0% |
! | GCTTCTACTTTCTCCAATTT+TGG | - | chr7.4:42343607-42343626 | MS.gene90289:CDS | 35.0% |
! | GTTGCTAATTTTTGTAGGTG+GGG | + | chr7.4:42346660-42346679 | None:intergenic | 35.0% |
! | TTGATTTTCAGTACTCCTGA+GGG | - | chr7.4:42344171-42344190 | MS.gene90289:intron | 35.0% |
! | TTGCTAATTTTTGTAGGTGG+GGG | + | chr7.4:42346659-42346678 | None:intergenic | 35.0% |
! | TTTATCTATCTCATGGTGGA+TGG | - | chr7.4:42344948-42344967 | MS.gene90289:intron | 35.0% |
!! | ACATCTTTGGTTTGTAGAGA+GGG | + | chr7.4:42348359-42348378 | None:intergenic | 35.0% |
!! | ACTTGATTTTTGGACGAACT+TGG | - | chr7.4:42346678-42346697 | MS.gene90289:intron | 35.0% |
!! | CTAGAAGCAGTAGTTTGTTT+AGG | + | chr7.4:42343556-42343575 | None:intergenic | 35.0% |
!! | GTAGTTTGTTTAGGATCCAT+TGG | + | chr7.4:42343547-42343566 | None:intergenic | 35.0% |
!! | TATTTTTCAGTTTGGAGGAG+AGG | - | chr7.4:42348428-42348447 | MS.gene90289:intron | 35.0% |
!! | TCTTGGAGTTTTTGTTGGTT+TGG | - | chr7.4:42344099-42344118 | MS.gene90289:intron | 35.0% |
!! | TGCTGCAAAAAGCATCTATA+AGG | + | chr7.4:42345666-42345685 | None:intergenic | 35.0% |
!! | TTATCTATCTCATGGTGGAT+GGG | - | chr7.4:42344949-42344968 | MS.gene90289:intron | 35.0% |
!!! | CCATTTTAGTTGCCGTTTTA+AGG | - | chr7.4:42346141-42346160 | MS.gene90289:CDS | 35.0% |
AACAGTTAAAAGAGGACCTG+AGG | - | chr7.4:42346311-42346330 | MS.gene90289:intron | 40.0% | |
AACCTGGTAATTCAGAGTTC+GGG | - | chr7.4:42343886-42343905 | MS.gene90289:intron | 40.0% | |
ACAAGCATTTGACGGTGTTT+GGG | + | chr7.4:42347871-42347890 | None:intergenic | 40.0% | |
ACAGTTAAAAGAGGACCTGA+GGG | - | chr7.4:42346312-42346331 | MS.gene90289:intron | 40.0% | |
ACATTTGGGCATACATTGCA+TGG | - | chr7.4:42345633-42345652 | MS.gene90289:intron | 40.0% | |
ACTACTGCTTCTAGTAGTAG+TGG | - | chr7.4:42343562-42343581 | MS.gene90289:CDS | 40.0% | |
ACTATGCCTATCAACGAACA+TGG | - | chr7.4:42345705-42345724 | MS.gene90289:intron | 40.0% | |
AGCAGTAAATCACACCAAAC+AGG | + | chr7.4:42348069-42348088 | None:intergenic | 40.0% | |
AGGAAGTAACTTCAACACCT+TGG | - | chr7.4:42348521-42348540 | MS.gene90289:intron | 40.0% | |
AGGGGAAATCGATGATTTCA+AGG | + | chr7.4:42343741-42343760 | None:intergenic | 40.0% | |
ATTGCAGAGAGAGGAATATG+TGG | + | chr7.4:42346263-42346282 | None:intergenic | 40.0% | |
CACTTCCATGATCTAGCAAA+AGG | + | chr7.4:42343761-42343780 | None:intergenic | 40.0% | |
CGTGTAACACTCAAAAGAGA+TGG | - | chr7.4:42346614-42346633 | MS.gene90289:intron | 40.0% | |
CTGATGTATATCCTGTTGGA+AGG | - | chr7.4:42346105-42346124 | MS.gene90289:CDS | 40.0% | |
CTGTGTCTAAATCCGTTACT+GGG | - | chr7.4:42343635-42343654 | MS.gene90289:CDS | 40.0% | |
CTTCCATGATCTAGCAAAAG+GGG | + | chr7.4:42343759-42343778 | None:intergenic | 40.0% | |
GAACAACTTATTGCAGAGAG+AGG | + | chr7.4:42346272-42346291 | None:intergenic | 40.0% | |
GAACCTGGTAATTCAGAGTT+CGG | - | chr7.4:42343885-42343904 | MS.gene90289:intron | 40.0% | |
GAAGACACTCTTTCAGTGTT+TGG | + | chr7.4:42347933-42347952 | None:intergenic | 40.0% | |
GAAGTAACTTCAACACCTTG+GGG | - | chr7.4:42348523-42348542 | MS.gene90289:intron | 40.0% | |
GAAGTTGTTAATCCAGAAGG+AGG | - | chr7.4:42344198-42344217 | MS.gene90289:intron | 40.0% | |
GAATCTATCAAGATCCACTG+TGG | - | chr7.4:42344545-42344564 | MS.gene90289:intron | 40.0% | |
GAGAGTGAAATGATGCTTAC+AGG | + | chr7.4:42345376-42345395 | None:intergenic | 40.0% | |
GATTACTTTCATCACCACAG+TGG | + | chr7.4:42344562-42344581 | None:intergenic | 40.0% | |
GCAGTAAATCACACCAAACA+GGG | + | chr7.4:42348068-42348087 | None:intergenic | 40.0% | |
GGAAGTAACTTCAACACCTT+GGG | - | chr7.4:42348522-42348541 | MS.gene90289:intron | 40.0% | |
GGTCCTGACAAATTTGACTA+CGG | - | chr7.4:42346721-42346740 | MS.gene90289:intron | 40.0% | |
GTAACCTACAGTATATGCAC+TGG | - | chr7.4:42346845-42346864 | MS.gene90289:CDS | 40.0% | |
GTATGTGAGATACAGTGTAG+TGG | + | chr7.4:42345610-42345629 | None:intergenic | 40.0% | |
GTCCTGACAAATTTGACTAC+GGG | - | chr7.4:42346722-42346741 | MS.gene90289:intron | 40.0% | |
GTGCATATACTGTAGGTTAC+AGG | + | chr7.4:42346845-42346864 | None:intergenic | 40.0% | |
GTTAAGCTTGTGCGCAAAAT+GGG | + | chr7.4:42348188-42348207 | None:intergenic | 40.0% | |
TAAACGCGCTACTACTTATC+TGG | - | chr7.4:42346581-42346600 | MS.gene90289:intron | 40.0% | |
TAAACTTCCAATTCACCCCA+AGG | + | chr7.4:42348541-42348560 | None:intergenic | 40.0% | |
TACTATACAAAGGGCCTGTT+TGG | - | chr7.4:42347602-42347621 | MS.gene90289:intron | 40.0% | |
TAGATGGTTTGATCTGACAG+AGG | - | chr7.4:42348501-42348520 | MS.gene90289:intron | 40.0% | |
TATCAAGTTTGTGACCCTGA+AGG | - | chr7.4:42347209-42347228 | MS.gene90289:intron | 40.0% | |
TCATAAGTCTCGCCAAGAAT+TGG | + | chr7.4:42345743-42345762 | None:intergenic | 40.0% | |
TCCTGACAAATTTGACTACG+GGG | - | chr7.4:42346723-42346742 | MS.gene90289:intron | 40.0% | |
TCGCCAAGAATTGGATTGAA+TGG | + | chr7.4:42345734-42345753 | None:intergenic | 40.0% | |
TCTCATCCGCCATATCTAAT+AGG | + | chr7.4:42345323-42345342 | None:intergenic | 40.0% | |
TCTGATGGCAACAACTTCTT+GGG | + | chr7.4:42348226-42348245 | None:intergenic | 40.0% | |
TCTGTCAGATCAAACCATCT+AGG | + | chr7.4:42348502-42348521 | None:intergenic | 40.0% | |
TCTGTGTCTAAATCCGTTAC+TGG | - | chr7.4:42343634-42343653 | MS.gene90289:CDS | 40.0% | |
TCTTGGCGAGACTTATGAAA+TGG | - | chr7.4:42345745-42345764 | MS.gene90289:intron | 40.0% | |
TGATGTATCGTATCCCTGTT+TGG | - | chr7.4:42348052-42348071 | MS.gene90289:intron | 40.0% | |
TGGTTTCCATGTTCGTTGAT+AGG | + | chr7.4:42345714-42345733 | None:intergenic | 40.0% | |
TGTTAAGCTTGTGCGCAAAA+TGG | + | chr7.4:42348189-42348208 | None:intergenic | 40.0% | |
TGTTAGTGTCAGTGCTTCAT+AGG | + | chr7.4:42344291-42344310 | None:intergenic | 40.0% | |
TTAACAACTTCCAATCCCTC+AGG | + | chr7.4:42344189-42344208 | None:intergenic | 40.0% | |
TTGTACGAAACATCGTATCG+CGG | - | chr7.4:42344811-42344830 | MS.gene90289:intron | 40.0% | |
! | ACGAACTTGGATTGATTCAC+CGG | - | chr7.4:42346691-42346710 | MS.gene90289:intron | 40.0% |
! | AGGTGAACAACTATTTTCCG+CGG | + | chr7.4:42345582-42345601 | None:intergenic | 40.0% |
! | ATCAAGTTGTTCCATTCTGC+AGG | - | chr7.4:42348117-42348136 | MS.gene90289:intron | 40.0% |
! | ATGTTCATTTTCAGCATGCC+CGG | + | chr7.4:42346033-42346052 | None:intergenic | 40.0% |
! | CATGTCATTTATAGCAGAGC+AGG | - | chr7.4:42345781-42345800 | MS.gene90289:intron | 40.0% |
! | GCATCGACATTTCAGATTGA+AGG | + | chr7.4:42344396-42344415 | None:intergenic | 40.0% |
! | GCATTTACATTTTGCAGAGC+TGG | - | chr7.4:42347101-42347120 | MS.gene90289:CDS | 40.0% |
! | TTTCAGATTGAAGGTGTGTC+AGG | + | chr7.4:42344387-42344406 | None:intergenic | 40.0% |
! | TTTCCCCTTTTGCTAGATCA+TGG | - | chr7.4:42343753-42343772 | MS.gene90289:CDS | 40.0% |
!! | AACACTGAAAGAGTGTCTTC+AGG | - | chr7.4:42347933-42347952 | MS.gene90289:intron | 40.0% |
!! | AGACACAGAAGTGCCAAAAT+TGG | + | chr7.4:42343623-42343642 | None:intergenic | 40.0% |
!! | GACATCTTTGGTTTGTAGAG+AGG | + | chr7.4:42348360-42348379 | None:intergenic | 40.0% |
!! | GTTGATTTTCAGTACTCCTG+AGG | - | chr7.4:42344170-42344189 | MS.gene90289:intron | 40.0% |
!! | TGGCTCTGATATCACATCAA+TGG | - | chr7.4:42345101-42345120 | MS.gene90289:intron | 40.0% |
!! | TTTATTTTCAACCGTGTGGC+TGG | - | chr7.4:42346759-42346778 | MS.gene90289:intron | 40.0% |
!!! | GTGCTTTATTTTCAACCGTG+TGG | - | chr7.4:42346755-42346774 | MS.gene90289:intron | 40.0% |
AACTCTCCAAACCTGCAGAA+TGG | + | chr7.4:42348131-42348150 | None:intergenic | 45.0% | |
ACATGCAGAGAAGAGCTCAT+AGG | + | chr7.4:42344688-42344707 | None:intergenic | 45.0% | |
ACCAGAAGTTCACTCCTAGA+TGG | - | chr7.4:42348485-42348504 | MS.gene90289:intron | 45.0% | |
ACCATCTAGGAGTGAACTTC+TGG | + | chr7.4:42348489-42348508 | None:intergenic | 45.0% | |
ACTGCTTCTAGTAGTAGTGG+TGG | - | chr7.4:42343565-42343584 | MS.gene90289:CDS | 45.0% | |
AGATGGTGTGACGCTTGATT+TGG | - | chr7.4:42346631-42346650 | MS.gene90289:intron | 45.0% | |
AGCCGAGTTGCCAAGAAATT+TGG | + | chr7.4:42346087-42346106 | None:intergenic | 45.0% | |
AGGAACTGAAGATGCTGAAG+AGG | - | chr7.4:42344218-42344237 | MS.gene90289:intron | 45.0% | |
CACAAGCATTTGACGGTGTT+TGG | + | chr7.4:42347872-42347891 | None:intergenic | 45.0% | |
CATCGATGTTATGGCCATAG+AGG | - | chr7.4:42347282-42347301 | MS.gene90289:intron | 45.0% | |
CCATCCAGTGCATATACTGT+AGG | + | chr7.4:42346852-42346871 | None:intergenic | 45.0% | |
CCTACAGTATATGCACTGGA+TGG | - | chr7.4:42346849-42346868 | MS.gene90289:CDS | 45.0% | |
CCTGACAAATTTGACTACGG+GGG | - | chr7.4:42346724-42346743 | MS.gene90289:intron | 45.0% | |
CTATAAATGACATGCCACCG+TGG | + | chr7.4:42345775-42345794 | None:intergenic | 45.0% | |
GATGCTACAAAGAATGGCTG+AGG | - | chr7.4:42345158-42345177 | MS.gene90289:intron | 45.0% | |
GCAATTGCTTGTGGACATTG+CGG | + | chr7.4:42344876-42344895 | None:intergenic | 45.0% | |
GCGATAGCATATCACCTCTA+TGG | + | chr7.4:42347299-42347318 | None:intergenic | 45.0% | |
GCTACTACTTATCTGGATGC+AGG | - | chr7.4:42346588-42346607 | MS.gene90289:intron | 45.0% | |
GCTGAAGAGGAAGCTAAGAA+GGG | - | chr7.4:42344231-42344250 | MS.gene90289:intron | 45.0% | |
GTCTGATGGCAACAACTTCT+TGG | + | chr7.4:42348227-42348246 | None:intergenic | 45.0% | |
GTTATTAATACTCCGGCTGC+CGG | - | chr7.4:42343857-42343876 | MS.gene90289:intron | 45.0% | |
GTTGTTCCATTCTGCAGGTT+TGG | - | chr7.4:42348122-42348141 | MS.gene90289:intron | 45.0% | |
TACAGGAACGGGATAGTTAC+TGG | - | chr7.4:42345058-42345077 | MS.gene90289:CDS | 45.0% | |
TAGCACTAAATCACGTACCG+CGG | - | chr7.4:42345562-42345581 | MS.gene90289:CDS | 45.0% | |
TATCCGCTTGCAATTGCTTG+TGG | + | chr7.4:42344885-42344904 | None:intergenic | 45.0% | |
TATGAAATGGCTAACCACGG+TGG | - | chr7.4:42345758-42345777 | MS.gene90289:intron | 45.0% | |
TCGGCTGATGTATATCCTGT+TGG | - | chr7.4:42346101-42346120 | MS.gene90289:CDS | 45.0% | |
TCGTCTTCGTCCTGATAGAA+TGG | - | chr7.4:42348249-42348268 | MS.gene90289:intron | 45.0% | |
TGCTGAAGAGGAAGCTAAGA+AGG | - | chr7.4:42344230-42344249 | MS.gene90289:intron | 45.0% | |
TGTCCACAAGCAATTGCAAG+CGG | - | chr7.4:42344879-42344898 | MS.gene90289:intron | 45.0% | |
TGTGCGCAAAATGGGTGTAT+TGG | + | chr7.4:42348180-42348199 | None:intergenic | 45.0% | |
TTATTAATACTCCGGCTGCC+GGG | - | chr7.4:42343858-42343877 | MS.gene90289:intron | 45.0% | |
TTCAACACCTTGGGGTGAAT+TGG | - | chr7.4:42348531-42348550 | MS.gene90289:intron | 45.0% | |
TTTCAGTACTCCTGAGGGAT+TGG | - | chr7.4:42344176-42344195 | MS.gene90289:intron | 45.0% | |
! | AACTTGGATTGATTCACCGG+GGG | - | chr7.4:42346694-42346713 | MS.gene90289:intron | 45.0% |
! | AGTTACTGGCTGCTACAGTA+TGG | + | chr7.4:42346885-42346904 | None:intergenic | 45.0% |
! | CACACACACACACACACTTT+TGG | - | chr7.4:42345488-42345507 | MS.gene90289:CDS | 45.0% |
! | CGAACTTGGATTGATTCACC+GGG | - | chr7.4:42346692-42346711 | MS.gene90289:intron | 45.0% |
! | GAACCCCCTTTTGACATCTT+TGG | + | chr7.4:42348372-42348391 | None:intergenic | 45.0% |
! | GAACTTGGATTGATTCACCG+GGG | - | chr7.4:42346693-42346712 | MS.gene90289:intron | 45.0% |
!! | AAAATGATTATATTATATTA+GGG | + | chr7.4:42346998-42347017 | None:intergenic | 5.0% |
ACACATGCAGACGAGTCGTT+CGG | + | chr7.4:42343973-42343992 | None:intergenic | 50.0% | |
ACGGTGTTTGGGAGAGCTTA+CGG | + | chr7.4:42347860-42347879 | None:intergenic | 50.0% | |
AGCTGAGAAGAGAAACCGAG+AGG | - | chr7.4:42348456-42348475 | MS.gene90289:intron | 50.0% | |
AGGAAGCTAAGAAGGGACGA+TGG | - | chr7.4:42344238-42344257 | MS.gene90289:intron | 50.0% | |
CAGAACTATCTACAGCAGCG+CGG | + | chr7.4:42348591-42348610 | None:intergenic | 50.0% | |
CCCCCGTAGTCAAATTTGTC+AGG | + | chr7.4:42346727-42346746 | None:intergenic | 50.0% | |
CTGGAAGTGGTTCTCCTTCA+GGG | + | chr7.4:42347226-42347245 | None:intergenic | 50.0% | |
GAAGGGACGATGGAAAGATG+AGG | - | chr7.4:42344248-42344267 | MS.gene90289:intron | 50.0% | |
GAATTACCAGGTTCCTTCCC+CGG | + | chr7.4:42343879-42343898 | None:intergenic | 50.0% | |
GATAGAATGGCCCTTGAGCA+GGG | - | chr7.4:42348262-42348281 | MS.gene90289:intron | 50.0% | |
GCATCTTCAGTTCCTCCTTC+TGG | + | chr7.4:42344213-42344232 | None:intergenic | 50.0% | |
GCTTCTAGTAGTAGTGGTGG+TGG | - | chr7.4:42343568-42343587 | MS.gene90289:CDS | 50.0% | |
TATTAATACTCCGGCTGCCG+GGG | - | chr7.4:42343859-42343878 | MS.gene90289:intron | 50.0% | |
TCATACCCAAACCAGCCACA+CGG | + | chr7.4:42346773-42346792 | None:intergenic | 50.0% | |
TGATAGAATGGCCCTTGAGC+AGG | - | chr7.4:42348261-42348280 | MS.gene90289:intron | 50.0% | |
TGCTCAAGGGCCATTCTATC+AGG | + | chr7.4:42348262-42348281 | None:intergenic | 50.0% | |
TTACCTGCTCTTCTCGTTGC+CGG | + | chr7.4:42348302-42348321 | None:intergenic | 50.0% | |
TTTGTCAGGACCATATCCCC+CGG | + | chr7.4:42346713-42346732 | None:intergenic | 50.0% | |
! | GATTGATTCACCGGGGGATA+TGG | - | chr7.4:42346700-42346719 | MS.gene90289:intron | 50.0% |
! | GGCTGCTACAGTATGGACTA+TGG | + | chr7.4:42346878-42346897 | None:intergenic | 50.0% |
! | TTTCAACCGTGTGGCTGGTT+TGG | - | chr7.4:42346764-42346783 | MS.gene90289:intron | 50.0% |
!! | ACTTCTGGTTCTTCGCCTCT+CGG | + | chr7.4:42348474-42348493 | None:intergenic | 50.0% |
!! | CAACGAGAGTACCTTCCAAC+AGG | + | chr7.4:42346119-42346138 | None:intergenic | 50.0% |
!! | TTCAACCGTGTGGCTGGTTT+GGG | - | chr7.4:42346765-42346784 | MS.gene90289:intron | 50.0% |
!! | TTGTCAAATAGCGGGTGCAG+TGG | + | chr7.4:42344787-42344806 | None:intergenic | 50.0% |
ACCTCTTTGAGCTCAGTGCC+TGG | + | chr7.4:42347245-42347264 | None:intergenic | 55.0% | |
ATCACCCTCCAATGAGTGCC+GGG | - | chr7.4:42346012-42346031 | MS.gene90289:intron | 55.0% | |
CACATGCAGACGAGTCGTTC+GGG | + | chr7.4:42343972-42343991 | None:intergenic | 55.0% | |
CAGAGCTGGCCGATATGAAG+TGG | - | chr7.4:42347115-42347134 | MS.gene90289:CDS | 55.0% | |
CATCACCCTCCAATGAGTGC+CGG | - | chr7.4:42346011-42346030 | MS.gene90289:intron | 55.0% | |
CCTGAAGGAGAACCACTTCC+AGG | - | chr7.4:42347224-42347243 | MS.gene90289:intron | 55.0% | |
CCTGGAAGTGGTTCTCCTTC+AGG | + | chr7.4:42347227-42347246 | None:intergenic | 55.0% | |
GCTGGCCGATATGAAGTGGA+TGG | - | chr7.4:42347119-42347138 | MS.gene90289:CDS | 55.0% | |
GGACGAAGACGAGAGTCTGA+TGG | + | chr7.4:42348241-42348260 | None:intergenic | 55.0% | |
GGATAGGTCACCCTGCTCAA+GGG | + | chr7.4:42348275-42348294 | None:intergenic | 55.0% | |
GGCCCGAACTCTGAATTACC+AGG | + | chr7.4:42343891-42343910 | None:intergenic | 55.0% | |
TTGAGCTCAGTGCCTGGAAG+TGG | + | chr7.4:42347239-42347258 | None:intergenic | 55.0% | |
TTGTGGACATTGCGGCGCTA+TGG | + | chr7.4:42344868-42344887 | None:intergenic | 55.0% | |
!! | TCCAGGCACTGAGCTCAAAG+AGG | - | chr7.4:42347241-42347260 | MS.gene90289:intron | 55.0% |
ATTGCGGCGCTATGGCGTAG+TGG | + | chr7.4:42344860-42344879 | None:intergenic | 60.0% | |
CAGGGTGACCTATCCGTGTC+CGG | - | chr7.4:42348280-42348299 | MS.gene90289:intron | 60.0% | |
CATGCCCGGCACTCATTGGA+GGG | + | chr7.4:42346019-42346038 | None:intergenic | 60.0% | |
CGGATAGGTCACCCTGCTCA+AGG | + | chr7.4:42348276-42348295 | None:intergenic | 60.0% | |
GCTCTTCTCGTTGCCGGACA+CGG | + | chr7.4:42348296-42348315 | None:intergenic | 60.0% | |
TCAGCATGCCCGGCACTCAT+TGG | + | chr7.4:42346023-42346042 | None:intergenic | 60.0% | |
TCTCGTTGCCGGACACGGAT+AGG | + | chr7.4:42348291-42348310 | None:intergenic | 60.0% | |
TGTCCGGCAACGAGAAGAGC+AGG | - | chr7.4:42348296-42348315 | MS.gene90289:intron | 60.0% | |
AATACTCCGGCTGCCGGGGA+AGG | - | chr7.4:42343863-42343882 | MS.gene90289:intron | 65.0% | |
GCATGCCCGGCACTCATTGG+AGG | + | chr7.4:42346020-42346039 | None:intergenic | 65.0% | |
CAGGTTCCTTCCCCGGCAGC+CGG | + | chr7.4:42343872-42343891 | None:intergenic | 70.0% | |
CGGCTGCCGGGGAAGGAACC+TGG | - | chr7.4:42343870-42343889 | MS.gene90289:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 42343538 | 42348681 | 42343538 | ID=MS.gene90289 |
chr7.4 | mRNA | 42343538 | 42348681 | 42343538 | ID=MS.gene90289.t1;Parent=MS.gene90289 |
chr7.4 | exon | 42348563 | 42348681 | 42348563 | ID=MS.gene90289.t1.exon1;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42348563 | 42348681 | 42348563 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42347950 | 42348037 | 42347950 | ID=MS.gene90289.t1.exon2;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42347950 | 42348037 | 42347950 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42347040 | 42347156 | 42347040 | ID=MS.gene90289.t1.exon3;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42347040 | 42347156 | 42347040 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42346844 | 42346916 | 42346844 | ID=MS.gene90289.t1.exon4;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42346844 | 42346916 | 42346844 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42346417 | 42346535 | 42346417 | ID=MS.gene90289.t1.exon5;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42346417 | 42346535 | 42346417 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42346093 | 42346214 | 42346093 | ID=MS.gene90289.t1.exon6;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42346093 | 42346214 | 42346093 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42345433 | 42345609 | 42345433 | ID=MS.gene90289.t1.exon7;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42345433 | 42345609 | 42345433 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42344957 | 42345101 | 42344957 | ID=MS.gene90289.t1.exon8;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42344957 | 42345101 | 42344957 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42343902 | 42344080 | 42343902 | ID=MS.gene90289.t1.exon9;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42343902 | 42344080 | 42343902 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
chr7.4 | exon | 42343538 | 42343781 | 42343538 | ID=MS.gene90289.t1.exon10;Parent=MS.gene90289.t1 |
chr7.4 | CDS | 42343538 | 42343781 | 42343538 | ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1 |
Gene Sequence |
Protein sequence |