AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90289


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90289.t1 MTR_7g061830 98.043 460 9 0 1 460 1 460 0.0 942
MS.gene90289.t1 MTR_4g064110 75.336 446 107 2 18 460 12 457 0.0 731
MS.gene90289.t1 MTR_3g073040 34.921 378 220 13 73 439 403 765 1.45e-51 186
MS.gene90289.t1 MTR_3g073040 34.921 378 220 13 73 439 402 764 1.72e-51 186
MS.gene90289.t1 MTR_3g097270 35.054 368 215 12 73 431 379 731 1.20e-49 181
MS.gene90289.t1 MTR_5g459350 33.773 379 223 13 73 439 377 739 3.00e-47 174
MS.gene90289.t1 MTR_3g086340 33.696 368 217 12 75 431 437 788 6.52e-45 167
MS.gene90289.t1 MTR_4g101410 32.979 376 229 11 73 439 160 521 8.22e-45 164
MS.gene90289.t1 MTR_4g101410 32.979 376 229 11 73 439 391 752 8.38e-44 164
MS.gene90289.t1 MTR_3g073040 41.848 184 98 6 73 250 403 583 1.31e-31 128
MS.gene90289.t1 MTR_3g086340 37.912 182 104 6 75 250 437 615 3.83e-25 108
MS.gene90289.t1 MTR_4g127510 27.247 356 207 15 73 408 36 359 5.02e-17 82.8
MS.gene90289.t1 MTR_2g037770 26.627 338 212 13 83 408 46 359 1.11e-14 75.9
MS.gene90289.t1 MTR_3g054960 88.235 34 4 0 280 313 5 38 8.37e-14 66.6
MS.gene90289.t1 MTR_2g037790 25.588 340 206 14 83 404 47 357 8.24e-13 70.1
MS.gene90289.t1 MTR_2g037790 25.588 340 206 14 83 404 50 360 8.91e-13 70.1
MS.gene90289.t1 MTR_2g037770 28.384 229 151 8 83 303 46 269 1.07e-11 65.5
MS.gene90289.t1 MTR_2g037770 27.826 230 153 8 83 304 47 271 2.48e-11 65.1
MS.gene90289.t1 MTR_2g037770 27.826 230 153 8 83 304 46 270 3.35e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90289.t1 AT5G02100 78.091 461 91 3 1 459 1 453 0.0 763
MS.gene90289.t1 AT3G09300 77.560 459 98 3 1 457 1 456 0.0 757
MS.gene90289.t1 AT5G59420 77.333 450 92 3 18 460 11 457 0.0 745
MS.gene90289.t1 AT5G02100 81.055 417 78 1 43 459 11 426 0.0 727
MS.gene90289.t1 AT5G02100 80.734 327 54 2 1 325 1 320 0.0 563
MS.gene90289.t1 AT4G12460 33.155 374 225 11 73 439 135 490 5.85e-52 183
MS.gene90289.t1 AT4G12460 33.155 374 225 11 73 439 135 490 5.85e-52 183
MS.gene90289.t1 AT4G12460 33.155 374 225 11 73 439 135 490 5.85e-52 183
MS.gene90289.t1 AT4G12460 33.155 374 225 11 73 439 324 679 1.21e-50 183
MS.gene90289.t1 AT4G12460 33.155 374 225 11 73 439 323 678 1.49e-50 182
MS.gene90289.t1 AT4G12460 33.155 374 225 11 73 439 323 678 1.49e-50 182
MS.gene90289.t1 AT4G12460 32.791 369 223 11 77 439 1 350 2.84e-50 175
MS.gene90289.t1 AT4G08180 34.375 384 222 14 69 439 432 798 8.49e-50 182
MS.gene90289.t1 AT4G08180 34.375 384 222 14 69 439 433 799 8.71e-50 182
MS.gene90289.t1 AT4G08180 34.375 384 222 14 69 439 433 799 8.71e-50 182
MS.gene90289.t1 AT4G22540 32.626 377 230 11 73 439 133 495 1.41e-49 177
MS.gene90289.t1 AT4G22540 32.626 377 230 11 73 439 133 495 1.41e-49 177
MS.gene90289.t1 AT4G22540 32.626 377 230 11 73 439 133 495 1.41e-49 177
MS.gene90289.t1 AT4G22540 32.626 377 230 11 73 439 133 495 1.41e-49 177
MS.gene90289.t1 AT1G13170 35.121 373 213 13 75 435 435 790 8.32e-49 179
MS.gene90289.t1 AT4G08180 34.375 384 222 14 69 439 432 798 9.73e-49 179
MS.gene90289.t1 AT4G22540 32.632 380 226 12 73 439 344 706 3.05e-48 176
MS.gene90289.t1 AT4G22540 32.632 380 226 12 73 439 344 706 3.05e-48 176
MS.gene90289.t1 AT2G31030 33.770 382 220 15 69 439 122 481 4.38e-48 172
MS.gene90289.t1 AT2G31020 34.211 380 221 15 69 439 407 766 2.37e-47 174
MS.gene90289.t1 AT1G13170 33.249 394 213 13 75 435 435 811 8.83e-46 170
MS.gene90289.t1 AT4G12460 31.206 282 175 9 73 345 323 594 1.50e-32 130
MS.gene90289.t1 AT4G12460 31.206 282 175 9 73 345 324 595 1.57e-32 130
MS.gene90289.t1 AT4G25850 35.915 142 82 5 83 218 45 183 1.05e-12 69.7
MS.gene90289.t1 AT4G25850 36.620 142 81 5 83 218 45 183 1.38e-12 68.2
MS.gene90289.t1 AT4G25850 35.915 142 82 5 83 218 147 285 1.56e-12 69.7
MS.gene90289.t1 AT4G25860 33.117 154 94 5 83 230 46 196 2.11e-12 68.9
MS.gene90289.t1 AT4G25860 33.117 154 94 5 83 230 40 190 2.24e-12 68.9

Find 119 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGGCAATTTGATAATT+TGG 0.085476 7.4:-42343549 MS.gene90289:CDS
GCTTCTACTTTCTCCAATTT+TGG 0.140009 7.4:-42348590 MS.gene90289:CDS
GCATCTTCAGTTCCTCCTTC+TGG 0.209164 7.4:+42347987 None:intergenic
AGCCGAGTTGCCAAGAAATT+TGG 0.211425 7.4:+42346113 None:intergenic
TTTCCAGTTATTAGAATCTT+TGG 0.232137 7.4:+42345030 None:intergenic
CTGTATATTTACCGTTATAT+TGG 0.237011 7.4:+42343636 None:intergenic
CCTGGAAGTGGTTCTCCTTC+AGG 0.245926 7.4:+42344973 None:intergenic
AAACTGAAAACCAAATTTCT+TGG 0.288124 7.4:-42346123 MS.gene90289:CDS
CTAGAAGCAGTAGTTTGTTT+AGG 0.290686 7.4:+42348644 None:intergenic
AGATTCTAATAACTGGAAAA+TGG 0.294958 7.4:-42345026 MS.gene90289:CDS
AGACACAGAAGTGCCAAAAT+TGG 0.298525 7.4:+42348577 None:intergenic
TTTCAACCGTGTGGCTGGTT+TGG 0.299374 7.4:-42345433 MS.gene90289:CDS
TTCAACCGTGTGGCTGGTTT+GGG 0.306787 7.4:-42345432 MS.gene90289:intron
AATTGCCAAGGATTGAATTC+TGG 0.309835 7.4:+42343560 None:intergenic
GTCTGATGGCAACAACTTCT+TGG 0.311470 7.4:+42343973 None:intergenic
TCTGTGTCTAAATCCGTTAC+TGG 0.317302 7.4:-42348563 MS.gene90289:CDS
TTCAACACCTTGGGGTGAAT+TGG 0.318364 7.4:-42343666 MS.gene90289:CDS
AAACCATTCAATCCAATTCT+TGG 0.319529 7.4:-42346469 MS.gene90289:CDS
TGGTTTCCATGTTCGTTGAT+AGG 0.324794 7.4:+42346486 None:intergenic
TGATAATTTGGAGGCTGAAT+AGG 0.326474 7.4:-42343537 None:intergenic
TGCTCAAGGGCCATTCTATC+AGG 0.333635 7.4:+42343938 None:intergenic
GAACCAAAGATTCTAATAAC+TGG 0.334792 7.4:-42345033 MS.gene90289:CDS
TGTTAAGCTTGTGCGCAAAA+TGG 0.342311 7.4:+42344011 None:intergenic
CCTGAAGGAGAACCACTTCC+AGG 0.345218 7.4:-42344973 MS.gene90289:CDS
AGTTGCTGAAACTCCTAAAA+AGG 0.350695 7.4:-42344050 MS.gene90289:CDS
ACCATCTAGGAGTGAACTTC+TGG 0.351260 7.4:+42343711 None:intergenic
TCTCATCCGCCATATCTAAT+AGG 0.351722 7.4:+42346877 None:intergenic
TACAGGAACGGGATAGTTAC+TGG 0.352770 7.4:-42347139 MS.gene90289:intron
TTACCTGCTCTTCTCGTTGC+CGG 0.355589 7.4:+42343898 None:intergenic
TCATAAGTCTCGCCAAGAAT+TGG 0.364216 7.4:+42346457 None:intergenic
CTGGAAGTGGTTCTCCTTCA+GGG 0.390296 7.4:+42344974 None:intergenic
ACTTCTGGTTCTTCGCCTCT+CGG 0.421507 7.4:+42343726 None:intergenic
ACGAACTTGGATTGATTCAC+CGG 0.427585 7.4:-42345506 MS.gene90289:CDS
ACCAGAAGTTCACTCCTAGA+TGG 0.427680 7.4:-42343712 MS.gene90289:CDS
TCAGCATGCCCGGCACTCAT+TGG 0.428818 7.4:+42346177 None:intergenic
TTTCAGTACTCCTGAGGGAT+TGG 0.430340 7.4:-42348021 MS.gene90289:intron
GGAAGTAACTTCAACACCTT+GGG 0.430491 7.4:-42343675 MS.gene90289:CDS
TCGCCAAGAATTGGATTGAA+TGG 0.437574 7.4:+42346466 None:intergenic
TTGAGCTCAGTGCCTGGAAG+TGG 0.441386 7.4:+42344961 None:intergenic
ATTCTTTGTAGCATCGTCAT+TGG 0.443051 7.4:+42347047 None:intergenic
AGATGGTGTGACGCTTGATT+TGG 0.443745 7.4:-42345566 MS.gene90289:CDS
TGATAGAATGGCCCTTGAGC+AGG 0.445077 7.4:-42343936 MS.gene90289:CDS
TCTTGGCGAGACTTATGAAA+TGG 0.446172 7.4:-42346452 MS.gene90289:CDS
TGCTGAAGAGGAAGCTAAGA+AGG 0.456916 7.4:-42347967 MS.gene90289:CDS
ACCTCTTTGAGCTCAGTGCC+TGG 0.457360 7.4:+42344955 None:intergenic
GTACTCTTACCTATTAGATA+TGG 0.460527 7.4:-42346886 MS.gene90289:CDS
AACCAAATTTCTTGGCAACT+CGG 0.462206 7.4:-42346115 MS.gene90289:CDS
GTCCTGACAAATTTGACTAC+GGG 0.464111 7.4:-42345475 MS.gene90289:CDS
ACCGATTTCCATGGCACCAA+TGG 0.467780 7.4:-42348669 None:intergenic
TCTGATGGCAACAACTTCTT+GGG 0.469985 7.4:+42343974 None:intergenic
TTGGAAGTTTACCAATATAA+CGG 0.476790 7.4:-42343647 MS.gene90289:CDS
CAGGGTGACCTATCCGTGTC+CGG 0.480998 7.4:-42343917 MS.gene90289:CDS
GTTAAGCTTGTGCGCAAAAT+GGG 0.484686 7.4:+42344012 None:intergenic
TTGGCAATTTGATAATTTGG+AGG 0.489898 7.4:-42343546 MS.gene90289:CDS
GTAGTTTGTTTAGGATCCAT+TGG 0.490818 7.4:+42348653 None:intergenic
TTTAGGATCCATTGGTGCCA+TGG 0.491784 7.4:+42348661 None:intergenic
GCATGCCCGGCACTCATTGG+AGG 0.493510 7.4:+42346180 None:intergenic
CAACGAGAGTACCTTCCAAC+AGG 0.496349 7.4:+42346081 None:intergenic
GCATATACAAGTCTCATGTA+TGG 0.502072 7.4:+42346846 None:intergenic
CATATCCATCCACTTCATAT+CGG 0.502430 7.4:+42345073 None:intergenic
GCTTCTAGTAGTAGTGGTGG+TGG 0.508922 7.4:-42348629 MS.gene90289:CDS
TGTGCGCAAAATGGGTGTAT+TGG 0.508928 7.4:+42344020 None:intergenic
CATGTCATTTATAGCAGAGC+AGG 0.509505 7.4:-42346416 MS.gene90289:intron
CGAACTTGGATTGATTCACC+GGG 0.510339 7.4:-42345505 MS.gene90289:CDS
ATCACCCTCCAATGAGTGCC+GGG 0.517943 7.4:-42346185 MS.gene90289:CDS
CATCACCCTCCAATGAGTGC+CGG 0.526096 7.4:-42346186 MS.gene90289:CDS
TCGGCTGATGTATATCCTGT+TGG 0.527162 7.4:-42346096 MS.gene90289:CDS
ATAGACCAGAATTCAATCCT+TGG 0.532358 7.4:-42343565 MS.gene90289:CDS
TCGTCTTCGTCCTGATAGAA+TGG 0.535385 7.4:-42343948 MS.gene90289:CDS
TCTCGTTGCCGGACACGGAT+AGG 0.536153 7.4:+42343909 None:intergenic
GGTCCTGACAAATTTGACTA+CGG 0.538233 7.4:-42345476 MS.gene90289:CDS
GCTCTTCTCGTTGCCGGACA+CGG 0.540689 7.4:+42343904 None:intergenic
AGGAAGTAACTTCAACACCT+TGG 0.547809 7.4:-42343676 MS.gene90289:CDS
CATGCCCGGCACTCATTGGA+GGG 0.549295 7.4:+42346181 None:intergenic
AATGACGATGCTACAAAGAA+TGG 0.551198 7.4:-42347045 MS.gene90289:CDS
AGGAACTGAAGATGCTGAAG+AGG 0.553903 7.4:-42347979 MS.gene90289:CDS
TGTCCGGCAACGAGAAGAGC+AGG 0.556678 7.4:-42343901 MS.gene90289:intron
TCTGTCAGATCAAACCATCT+AGG 0.561419 7.4:+42343698 None:intergenic
AAGTCTCATGTATGGATCAT+CGG 0.565263 7.4:+42346854 None:intergenic
TTAACAACTTCCAATCCCTC+AGG 0.574758 7.4:+42348011 None:intergenic
CTGTGTCTAAATCCGTTACT+GGG 0.575943 7.4:-42348562 MS.gene90289:intron
TCCAAATTATCAAATTGCCA+AGG 0.578229 7.4:+42343548 None:intergenic
GATAGAATGGCCCTTGAGCA+GGG 0.578871 7.4:-42343935 MS.gene90289:CDS
TTGGAAGTTGTTAATCCAGA+AGG 0.580286 7.4:-42348002 MS.gene90289:CDS
CGGATAGGTCACCCTGCTCA+AGG 0.585127 7.4:+42343924 None:intergenic
GCTGGCCGATATGAAGTGGA+TGG 0.593394 7.4:-42345078 MS.gene90289:CDS
TATCAAGTTTGTGACCCTGA+AGG 0.595390 7.4:-42344988 MS.gene90289:CDS
TGGCTCTGATATCACATCAA+TGG 0.599652 7.4:-42347096 MS.gene90289:CDS
ACTATGCCTATCAACGAACA+TGG 0.602963 7.4:-42346492 MS.gene90289:CDS
CTCTTACCTATTAGATATGG+CGG 0.604056 7.4:-42346883 MS.gene90289:CDS
GGACGAAGACGAGAGTCTGA+TGG 0.607644 7.4:+42343959 None:intergenic
GGATAGGTCACCCTGCTCAA+GGG 0.609499 7.4:+42343925 None:intergenic
GAAGTTGTTAATCCAGAAGG+AGG 0.612155 7.4:-42347999 MS.gene90289:CDS
ACTACTGCTTCTAGTAGTAG+TGG 0.614539 7.4:-42348635 MS.gene90289:CDS
CTGATGTATATCCTGTTGGA+AGG 0.615522 7.4:-42346092 MS.gene90289:intron
AAAATGATGCAAAAGTATGT+TGG 0.618288 7.4:-42347116 MS.gene90289:CDS
GATGCTACAAAGAATGGCTG+AGG 0.619746 7.4:-42347039 MS.gene90289:intron
TAAACTTCCAATTCACCCCA+AGG 0.625431 7.4:+42343659 None:intergenic
CGTGTAACACTCAAAAGAGA+TGG 0.628643 7.4:-42345583 MS.gene90289:CDS
GCTGAAGAGGAAGCTAAGAA+GGG 0.629950 7.4:-42347966 MS.gene90289:CDS
CAGAGCTGGCCGATATGAAG+TGG 0.634968 7.4:-42345082 MS.gene90289:CDS
TTTGTCAGGACCATATCCCC+CGG 0.638714 7.4:+42345487 None:intergenic
TCCAGGCACTGAGCTCAAAG+AGG 0.639649 7.4:-42344956 MS.gene90289:intron
ATAAGAAACATACCCAGTAA+CGG 0.644588 7.4:+42348550 None:intergenic
AGGAAGCTAAGAAGGGACGA+TGG 0.645802 7.4:-42347959 MS.gene90289:CDS
GAAGGGACGATGGAAAGATG+AGG 0.648742 7.4:-42347949 MS.gene90289:intron
ACTGCTTCTAGTAGTAGTGG+TGG 0.656420 7.4:-42348632 MS.gene90289:CDS
TCCTGACAAATTTGACTACG+GGG 0.660297 7.4:-42345474 MS.gene90289:CDS
AACTTGGATTGATTCACCGG+GGG 0.663951 7.4:-42345503 MS.gene90289:CDS
TCATACCCAAACCAGCCACA+CGG 0.689650 7.4:+42345427 None:intergenic
CCTGACAAATTTGACTACGG+GGG 0.696732 7.4:-42345473 MS.gene90289:CDS
TAGATGGTTTGATCTGACAG+AGG 0.699389 7.4:-42343696 MS.gene90289:CDS
CTATAAATGACATGCCACCG+TGG 0.712560 7.4:+42346425 None:intergenic
AGCTGAGAAGAGAAACCGAG+AGG 0.718676 7.4:-42343741 MS.gene90289:CDS
GAACTTGGATTGATTCACCG+GGG 0.721206 7.4:-42345504 MS.gene90289:CDS
ACTTATGAAATGGCTAACCA+CGG 0.724007 7.4:-42346442 MS.gene90289:CDS
GAAGTAACTTCAACACCTTG+GGG 0.735829 7.4:-42343674 MS.gene90289:CDS
TATGAAATGGCTAACCACGG+TGG 0.752131 7.4:-42346439 MS.gene90289:CDS
CAGAACTATCTACAGCAGCG+CGG 0.791276 7.4:+42343609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATGATTATATTATATT+AGG + chr7.4:42346999-42347018 None:intergenic 10.0%
!!! ATGTAAATTGTATAATTTTA+AGG - chr7.4:42348026-42348045 MS.gene90289:intron 10.0%
!!! TGATATGTATAATTTTTTAT+TGG - chr7.4:42343833-42343852 MS.gene90289:intron 10.0%
!!! TTTTGTAATTTTTTTTATGT+GGG - chr7.4:42343712-42343731 MS.gene90289:CDS 10.0%
!!! TTTTTGTAATTTTTTTTATG+TGG - chr7.4:42343711-42343730 MS.gene90289:CDS 10.0%
!! AAAAAAATATTAATTGCCAA+TGG - chr7.4:42346405-42346424 MS.gene90289:intron 15.0%
!! AACTTATGAACAAATTATTT+GGG + chr7.4:42347907-42347926 None:intergenic 15.0%
!! AGTTAAGATTATTATATGAA+AGG + chr7.4:42346230-42346249 None:intergenic 15.0%
!! TAACTTATGAACAAATTATT+TGG + chr7.4:42347908-42347927 None:intergenic 15.0%
!! TAATATTTGTGTTGTATTTA+TGG - chr7.4:42344430-42344449 MS.gene90289:intron 15.0%
!! TAGAATATATACTATACAAA+GGG - chr7.4:42347593-42347612 MS.gene90289:intron 15.0%
!! TATTATAGAGACAAAAAAAT+TGG - chr7.4:42344589-42344608 MS.gene90289:intron 15.0%
!! TTAGAATATATACTATACAA+AGG - chr7.4:42347592-42347611 MS.gene90289:intron 15.0%
!! TTTAGTAACTTAAAGTTAAA+AGG - chr7.4:42347079-42347098 MS.gene90289:CDS 15.0%
!!! ATTTAACAAGTTTGAAATTA+TGG + chr7.4:42343677-42343696 None:intergenic 15.0%
!!! ATTTTAAACTGTGTATTATA+TGG - chr7.4:42346428-42346447 MS.gene90289:CDS 15.0%
!!! TTCATCTTTTATTTAAGTTT+GGG - chr7.4:42346354-42346373 MS.gene90289:intron 15.0%
!!! TTTCATCTTTTATTTAAGTT+TGG - chr7.4:42346353-42346372 MS.gene90289:intron 15.0%
!! ATGTTGTACTTCAATTTAAT+CGG - chr7.4:42346466-42346485 MS.gene90289:CDS 20.0%
!! GAATTATTTGAGTAATTTCT+TGG - chr7.4:42344082-42344101 MS.gene90289:intron 20.0%
!! TCAAAAGTAACAAAATGTAT+TGG + chr7.4:42346189-42346208 None:intergenic 20.0%
!! TTAAATTGAAGTACAACATA+CGG + chr7.4:42346465-42346484 None:intergenic 20.0%
!! TTAAATTGGGATTATATAAC+AGG - chr7.4:42347480-42347499 MS.gene90289:intron 20.0%
!! TTATAAAAACAAATTGCTAC+AGG - chr7.4:42345983-42346002 MS.gene90289:intron 20.0%
!! TTTGTTTGAATTCTTAGTTA+TGG - chr7.4:42347566-42347585 MS.gene90289:intron 20.0%
!!! AAAATTAGCAACTTGATTTT+TGG - chr7.4:42346668-42346687 MS.gene90289:intron 20.0%
!!! AAGAATTAGTTGATTCAATT+TGG + chr7.4:42347520-42347539 None:intergenic 20.0%
!!! ATGTATAAATAGCCTTAAAA+CGG + chr7.4:42346156-42346175 None:intergenic 20.0%
!!! CTGTTTTTATCGTAAAAAAA+GGG - chr7.4:42347699-42347718 MS.gene90289:intron 20.0%
!!! CTTAAACTTATTTTTCAGTT+TGG - chr7.4:42348420-42348439 MS.gene90289:intron 20.0%
!!! TCATCTTTTATTTAAGTTTG+GGG - chr7.4:42346355-42346374 MS.gene90289:intron 20.0%
!!! TGTCATGTATTTTTTTACAA+TGG - chr7.4:42345885-42345904 MS.gene90289:intron 20.0%
!!! TGTTTGTTTTTTTGTAATGT+TGG - chr7.4:42346501-42346520 MS.gene90289:CDS 20.0%
!!! TTTTGATGTTTAAGTATTAG+TGG - chr7.4:42344047-42344066 MS.gene90289:CDS 20.0%
! AAAAAATACATGACAAAGAG+AGG + chr7.4:42345880-42345899 None:intergenic 25.0%
! AAACTGAAAACCAAATTTCT+TGG - chr7.4:42346074-42346093 MS.gene90289:intron 25.0%
! AACTGTGTATTATATGGATA+AGG - chr7.4:42346434-42346453 MS.gene90289:CDS 25.0%
! AACTGTTTCATATGAACAAT+AGG - chr7.4:42347756-42347775 MS.gene90289:intron 25.0%
! AGATTCTAATAACTGGAAAA+TGG - chr7.4:42347171-42347190 MS.gene90289:intron 25.0%
! ATGCATAAATAAGAAGTTAC+TGG + chr7.4:42346899-42346918 None:intergenic 25.0%
! ATTAAGATGTTAATCCAAAC+AGG + chr7.4:42347619-42347638 None:intergenic 25.0%
! CATCATTTATCGCAAAAAAA+TGG + chr7.4:42346963-42346982 None:intergenic 25.0%
! CTGTATATTTACCGTTATAT+TGG + chr7.4:42348564-42348583 None:intergenic 25.0%
! GAATACATTTATCTATCTCA+TGG - chr7.4:42344941-42344960 MS.gene90289:intron 25.0%
! GTAGAAATAAGCGATAATTT+AGG + chr7.4:42346805-42346824 None:intergenic 25.0%
! TAATATGTCATGCAAACAAA+TGG - chr7.4:42344903-42344922 MS.gene90289:intron 25.0%
! TGAAACTAATACTTCACATA+TGG + chr7.4:42347053-42347072 None:intergenic 25.0%
! TGCTAAGTATTATCAAATTC+TGG + chr7.4:42345547-42345566 None:intergenic 25.0%
! TTCATTCTTTCATTCCTTAT+TGG + chr7.4:42344528-42344547 None:intergenic 25.0%
! TTGGAAGTTTACCAATATAA+CGG - chr7.4:42348550-42348569 MS.gene90289:intron 25.0%
! TTTCCAGTTATTAGAATCTT+TGG + chr7.4:42347170-42347189 None:intergenic 25.0%
!! AAAATGATGCAAAAGTATGT+TGG - chr7.4:42345081-42345100 MS.gene90289:CDS 25.0%
!! ATACACAGTTTAAAATCCAT+TGG + chr7.4:42346424-42346443 None:intergenic 25.0%
!! ATCAAGTTAAATTTGACTTC+AGG + chr7.4:42347543-42347562 None:intergenic 25.0%
!! TAAAACAGTTTTCTCAATTG+CGG - chr7.4:42344708-42344727 MS.gene90289:intron 25.0%
!! TAATTTCTTGGAGTTTTTGT+TGG - chr7.4:42344094-42344113 MS.gene90289:intron 25.0%
!! TATTGGAATTTGTCCTTTTT+AGG + chr7.4:42348163-42348182 None:intergenic 25.0%
!! TTTTACCTAGAAATCAAGTT+TGG - chr7.4:42343941-42343960 MS.gene90289:CDS 25.0%
!!! AAAAACCCAATTTTGAAAGA+TGG + chr7.4:42343801-42343820 None:intergenic 25.0%
!!! AAACTTATTTTTCAGTTTGG+AGG - chr7.4:42348423-42348442 MS.gene90289:intron 25.0%
!!! ATCAAGTTGCTAATTTTTGT+AGG + chr7.4:42346665-42346684 None:intergenic 25.0%
!!! CATTTCTTTTAGTTTACTTG+TGG - chr7.4:42346921-42346940 MS.gene90289:intron 25.0%
!!! CTATTTTTGTTGTTAGAGAT+GGG - chr7.4:42344615-42344634 MS.gene90289:intron 25.0%
!!! GCTGTTTTTATCGTAAAAAA+AGG - chr7.4:42347698-42347717 MS.gene90289:intron 25.0%
!!! TACAAAGTTTTGTCAAATAG+CGG + chr7.4:42344796-42344815 None:intergenic 25.0%
!!! TATTGGTGTTATTAATACTC+CGG - chr7.4:42343850-42343869 MS.gene90289:intron 25.0%
!!! TCTATTTTTGTTGTTAGAGA+TGG - chr7.4:42344614-42344633 MS.gene90289:intron 25.0%
AAACCATTCAATCCAATTCT+TGG - chr7.4:42345728-42345747 MS.gene90289:intron 30.0%
AATGTACAAAAGAACACTTG+AGG + chr7.4:42345039-42345058 None:intergenic 30.0%
ACAAACCAAAGATGTCAAAA+GGG - chr7.4:42348364-42348383 MS.gene90289:intron 30.0%
ACTGAAGAAAGAAAATAAGC+AGG + chr7.4:42345819-42345838 None:intergenic 30.0%
AGAATCCAAACTTGATTTCT+AGG + chr7.4:42343949-42343968 None:intergenic 30.0%
ATAAGAAACATACCCAGTAA+CGG + chr7.4:42343650-42343669 None:intergenic 30.0%
ATCAGACTTTACTTACTGTT+GGG + chr7.4:42343912-42343931 None:intergenic 30.0%
ATCTCACATACACAACATTT+GGG - chr7.4:42345619-42345638 MS.gene90289:intron 30.0%
ATGAATGCAAACCTTGTAAT+TGG + chr7.4:42344481-42344500 None:intergenic 30.0%
ATGTACAAAAGAACACTTGA+GGG + chr7.4:42345038-42345057 None:intergenic 30.0%
CATCTTAATTAAGCGCTTAT+AGG - chr7.4:42347630-42347649 MS.gene90289:intron 30.0%
GAACCAAAGATTCTAATAAC+TGG - chr7.4:42347164-42347183 MS.gene90289:intron 30.0%
GACAAAACAACAGTTAAAAG+AGG - chr7.4:42346303-42346322 MS.gene90289:intron 30.0%
GATGACCATCTTTCAAAATT+GGG - chr7.4:42343793-42343812 MS.gene90289:intron 30.0%
GCATGTAAAATTGGTGAAAT+CGG + chr7.4:42345858-42345877 None:intergenic 30.0%
GTAAATTATGCTGACCAATA+AGG - chr7.4:42344511-42344530 MS.gene90289:intron 30.0%
GTACTCTTACCTATTAGATA+TGG - chr7.4:42345311-42345330 MS.gene90289:intron 30.0%
TACAAACCAAAGATGTCAAA+AGG - chr7.4:42348363-42348382 MS.gene90289:intron 30.0%
TACATTTATCTATCTCATGG+TGG - chr7.4:42344944-42344963 MS.gene90289:intron 30.0%
TATAGAAGTCACCAATTACA+AGG - chr7.4:42344467-42344486 MS.gene90289:intron 30.0%
TATCTCACATACACAACATT+TGG - chr7.4:42345618-42345637 MS.gene90289:intron 30.0%
TCCAAATTATCAAATTGCCA+AGG + chr7.4:42348652-42348671 None:intergenic 30.0%
TGTGTATTATATGGATAAGG+AGG - chr7.4:42346437-42346456 MS.gene90289:CDS 30.0%
TTATCTAATTTCACAGCTCA+TGG - chr7.4:42345287-42345306 MS.gene90289:intron 30.0%
TTCTGTAGTCAGAGAAAATA+TGG - chr7.4:42347730-42347749 MS.gene90289:intron 30.0%
! AAGTTGCTAATTTTTGTAGG+TGG + chr7.4:42346662-42346681 None:intergenic 30.0%
! AGTGTTCTTTTGTACATTAC+AGG - chr7.4:42345041-42345060 MS.gene90289:CDS 30.0%
! AGTTGCTAATTTTTGTAGGT+GGG + chr7.4:42346661-42346680 None:intergenic 30.0%
! CATGGAAGTGATTATTGTTT+TGG - chr7.4:42343771-42343790 MS.gene90289:intron 30.0%
! TAGTTGATTCAATTTGGCTA+CGG + chr7.4:42347514-42347533 None:intergenic 30.0%
! TCCTTGGCAATTTGATAATT+TGG - chr7.4:42348648-42348667 MS.gene90289:CDS 30.0%
! TCTTTTGTACATTACAGGAA+CGG - chr7.4:42345046-42345065 MS.gene90289:CDS 30.0%
! TTGAATTCTGGTCTATTTTC+AGG + chr7.4:42348628-42348647 None:intergenic 30.0%
! TTGGCAATTTGATAATTTGG+AGG - chr7.4:42348651-42348670 MS.gene90289:CDS 30.0%
!! ACAAAGTTTTGTCAAATAGC+GGG + chr7.4:42344795-42344814 None:intergenic 30.0%
!! GCTTTGGAGATGATTAAATT+GGG - chr7.4:42347467-42347486 MS.gene90289:intron 30.0%
!! TGCTTTGGAGATGATTAAAT+TGG - chr7.4:42347466-42347485 MS.gene90289:intron 30.0%
!!! ATGCTTTGGAAACAACTTTT+AGG - chr7.4:42347403-42347422 MS.gene90289:intron 30.0%
!!! GTATTTTTTTACAATGGCTC+TGG - chr7.4:42345891-42345910 MS.gene90289:intron 30.0%
AAACCAAAGATGTCAAAAGG+GGG - chr7.4:42348366-42348385 MS.gene90289:intron 35.0%
AACCAAATTTCTTGGCAACT+CGG - chr7.4:42346082-42346101 MS.gene90289:intron 35.0%
AAGTCTCATGTATGGATCAT+CGG + chr7.4:42345346-42345365 None:intergenic 35.0%
AATGACGATGCTACAAAGAA+TGG - chr7.4:42345152-42345171 MS.gene90289:intron 35.0%
AATTGCCAAGGATTGAATTC+TGG + chr7.4:42348640-42348659 None:intergenic 35.0%
ACTTATGAAATGGCTAACCA+CGG - chr7.4:42345755-42345774 MS.gene90289:intron 35.0%
ACTTCCATGATCTAGCAAAA+GGG + chr7.4:42343760-42343779 None:intergenic 35.0%
AGAATAAGTATTACACCCTC+AGG + chr7.4:42346330-42346349 None:intergenic 35.0%
AGTTGCTGAAACTCCTAAAA+AGG - chr7.4:42348147-42348166 MS.gene90289:intron 35.0%
ATAGACCAGAATTCAATCCT+TGG - chr7.4:42348632-42348651 MS.gene90289:CDS 35.0%
ATTCTTTGTAGCATCGTCAT+TGG + chr7.4:42345153-42345172 None:intergenic 35.0%
CAAACCAAAGATGTCAAAAG+GGG - chr7.4:42348365-42348384 MS.gene90289:intron 35.0%
CAACTCTTTCATCGATGTTA+TGG - chr7.4:42347273-42347292 MS.gene90289:intron 35.0%
CATATCCATCCACTTCATAT+CGG + chr7.4:42347127-42347146 None:intergenic 35.0%
CCTTAAAACGGCAACTAAAA+TGG + chr7.4:42346144-42346163 None:intergenic 35.0%
CTACTAACACAAGCATTTGA+CGG + chr7.4:42347879-42347898 None:intergenic 35.0%
CTCTTACCTATTAGATATGG+CGG - chr7.4:42345314-42345333 MS.gene90289:intron 35.0%
GATCAGACTTTACTTACTGT+TGG + chr7.4:42343913-42343932 None:intergenic 35.0%
GCATATACAAGTCTCATGTA+TGG + chr7.4:42345354-42345373 None:intergenic 35.0%
GGAATGTGCATATTGAAACA+TGG - chr7.4:42344636-42344655 MS.gene90289:intron 35.0%
GGATGACCATCTTTCAAAAT+TGG - chr7.4:42343792-42343811 MS.gene90289:intron 35.0%
TAATGCTGATACGCTTTCTA+AGG + chr7.4:42347798-42347817 None:intergenic 35.0%
TATGTCATGCAAACAAATGG+TGG - chr7.4:42344906-42344925 MS.gene90289:intron 35.0%
TCATTAAGCCTGATATGCTT+TGG - chr7.4:42347389-42347408 MS.gene90289:intron 35.0%
TCTCTGCAATAAGTTGTTCA+AGG - chr7.4:42346273-42346292 MS.gene90289:intron 35.0%
TGGTTAATACTGTAGTGTAG+CGG + chr7.4:42345527-42345546 None:intergenic 35.0%
TTAAGTTTGGGGATTGTTAG+TGG - chr7.4:42346366-42346385 MS.gene90289:intron 35.0%
TTGCAAAGCATATGATGCTT+TGG - chr7.4:42347451-42347470 MS.gene90289:intron 35.0%
TTGGAAGTTGTTAATCCAGA+AGG - chr7.4:42344195-42344214 MS.gene90289:intron 35.0%
! AGTTGATTCAATTTGGCTAC+GGG + chr7.4:42347513-42347532 None:intergenic 35.0%
! AGTTGTTTCCAAAGCATATC+AGG + chr7.4:42347400-42347419 None:intergenic 35.0%
! ATCTAAAAGAGTGTGCTGTT+AGG + chr7.4:42347321-42347340 None:intergenic 35.0%
! ATTGGCTCAAAAACGATAAC+TGG + chr7.4:42345135-42345154 None:intergenic 35.0%
! CAAAGAGAGGCATGTAAAAT+TGG + chr7.4:42345867-42345886 None:intergenic 35.0%
! CTTTTGTACATTACAGGAAC+GGG - chr7.4:42345047-42345066 MS.gene90289:CDS 35.0%
! GATACAGTGTAGTGGAATTT+AGG + chr7.4:42345602-42345621 None:intergenic 35.0%
! GCTTCTACTTTCTCCAATTT+TGG - chr7.4:42343607-42343626 MS.gene90289:CDS 35.0%
! GTTGCTAATTTTTGTAGGTG+GGG + chr7.4:42346660-42346679 None:intergenic 35.0%
! TTGATTTTCAGTACTCCTGA+GGG - chr7.4:42344171-42344190 MS.gene90289:intron 35.0%
! TTGCTAATTTTTGTAGGTGG+GGG + chr7.4:42346659-42346678 None:intergenic 35.0%
! TTTATCTATCTCATGGTGGA+TGG - chr7.4:42344948-42344967 MS.gene90289:intron 35.0%
!! ACATCTTTGGTTTGTAGAGA+GGG + chr7.4:42348359-42348378 None:intergenic 35.0%
!! ACTTGATTTTTGGACGAACT+TGG - chr7.4:42346678-42346697 MS.gene90289:intron 35.0%
!! CTAGAAGCAGTAGTTTGTTT+AGG + chr7.4:42343556-42343575 None:intergenic 35.0%
!! GTAGTTTGTTTAGGATCCAT+TGG + chr7.4:42343547-42343566 None:intergenic 35.0%
!! TATTTTTCAGTTTGGAGGAG+AGG - chr7.4:42348428-42348447 MS.gene90289:intron 35.0%
!! TCTTGGAGTTTTTGTTGGTT+TGG - chr7.4:42344099-42344118 MS.gene90289:intron 35.0%
!! TGCTGCAAAAAGCATCTATA+AGG + chr7.4:42345666-42345685 None:intergenic 35.0%
!! TTATCTATCTCATGGTGGAT+GGG - chr7.4:42344949-42344968 MS.gene90289:intron 35.0%
!!! CCATTTTAGTTGCCGTTTTA+AGG - chr7.4:42346141-42346160 MS.gene90289:CDS 35.0%
AACAGTTAAAAGAGGACCTG+AGG - chr7.4:42346311-42346330 MS.gene90289:intron 40.0%
AACCTGGTAATTCAGAGTTC+GGG - chr7.4:42343886-42343905 MS.gene90289:intron 40.0%
ACAAGCATTTGACGGTGTTT+GGG + chr7.4:42347871-42347890 None:intergenic 40.0%
ACAGTTAAAAGAGGACCTGA+GGG - chr7.4:42346312-42346331 MS.gene90289:intron 40.0%
ACATTTGGGCATACATTGCA+TGG - chr7.4:42345633-42345652 MS.gene90289:intron 40.0%
ACTACTGCTTCTAGTAGTAG+TGG - chr7.4:42343562-42343581 MS.gene90289:CDS 40.0%
ACTATGCCTATCAACGAACA+TGG - chr7.4:42345705-42345724 MS.gene90289:intron 40.0%
AGCAGTAAATCACACCAAAC+AGG + chr7.4:42348069-42348088 None:intergenic 40.0%
AGGAAGTAACTTCAACACCT+TGG - chr7.4:42348521-42348540 MS.gene90289:intron 40.0%
AGGGGAAATCGATGATTTCA+AGG + chr7.4:42343741-42343760 None:intergenic 40.0%
ATTGCAGAGAGAGGAATATG+TGG + chr7.4:42346263-42346282 None:intergenic 40.0%
CACTTCCATGATCTAGCAAA+AGG + chr7.4:42343761-42343780 None:intergenic 40.0%
CGTGTAACACTCAAAAGAGA+TGG - chr7.4:42346614-42346633 MS.gene90289:intron 40.0%
CTGATGTATATCCTGTTGGA+AGG - chr7.4:42346105-42346124 MS.gene90289:CDS 40.0%
CTGTGTCTAAATCCGTTACT+GGG - chr7.4:42343635-42343654 MS.gene90289:CDS 40.0%
CTTCCATGATCTAGCAAAAG+GGG + chr7.4:42343759-42343778 None:intergenic 40.0%
GAACAACTTATTGCAGAGAG+AGG + chr7.4:42346272-42346291 None:intergenic 40.0%
GAACCTGGTAATTCAGAGTT+CGG - chr7.4:42343885-42343904 MS.gene90289:intron 40.0%
GAAGACACTCTTTCAGTGTT+TGG + chr7.4:42347933-42347952 None:intergenic 40.0%
GAAGTAACTTCAACACCTTG+GGG - chr7.4:42348523-42348542 MS.gene90289:intron 40.0%
GAAGTTGTTAATCCAGAAGG+AGG - chr7.4:42344198-42344217 MS.gene90289:intron 40.0%
GAATCTATCAAGATCCACTG+TGG - chr7.4:42344545-42344564 MS.gene90289:intron 40.0%
GAGAGTGAAATGATGCTTAC+AGG + chr7.4:42345376-42345395 None:intergenic 40.0%
GATTACTTTCATCACCACAG+TGG + chr7.4:42344562-42344581 None:intergenic 40.0%
GCAGTAAATCACACCAAACA+GGG + chr7.4:42348068-42348087 None:intergenic 40.0%
GGAAGTAACTTCAACACCTT+GGG - chr7.4:42348522-42348541 MS.gene90289:intron 40.0%
GGTCCTGACAAATTTGACTA+CGG - chr7.4:42346721-42346740 MS.gene90289:intron 40.0%
GTAACCTACAGTATATGCAC+TGG - chr7.4:42346845-42346864 MS.gene90289:CDS 40.0%
GTATGTGAGATACAGTGTAG+TGG + chr7.4:42345610-42345629 None:intergenic 40.0%
GTCCTGACAAATTTGACTAC+GGG - chr7.4:42346722-42346741 MS.gene90289:intron 40.0%
GTGCATATACTGTAGGTTAC+AGG + chr7.4:42346845-42346864 None:intergenic 40.0%
GTTAAGCTTGTGCGCAAAAT+GGG + chr7.4:42348188-42348207 None:intergenic 40.0%
TAAACGCGCTACTACTTATC+TGG - chr7.4:42346581-42346600 MS.gene90289:intron 40.0%
TAAACTTCCAATTCACCCCA+AGG + chr7.4:42348541-42348560 None:intergenic 40.0%
TACTATACAAAGGGCCTGTT+TGG - chr7.4:42347602-42347621 MS.gene90289:intron 40.0%
TAGATGGTTTGATCTGACAG+AGG - chr7.4:42348501-42348520 MS.gene90289:intron 40.0%
TATCAAGTTTGTGACCCTGA+AGG - chr7.4:42347209-42347228 MS.gene90289:intron 40.0%
TCATAAGTCTCGCCAAGAAT+TGG + chr7.4:42345743-42345762 None:intergenic 40.0%
TCCTGACAAATTTGACTACG+GGG - chr7.4:42346723-42346742 MS.gene90289:intron 40.0%
TCGCCAAGAATTGGATTGAA+TGG + chr7.4:42345734-42345753 None:intergenic 40.0%
TCTCATCCGCCATATCTAAT+AGG + chr7.4:42345323-42345342 None:intergenic 40.0%
TCTGATGGCAACAACTTCTT+GGG + chr7.4:42348226-42348245 None:intergenic 40.0%
TCTGTCAGATCAAACCATCT+AGG + chr7.4:42348502-42348521 None:intergenic 40.0%
TCTGTGTCTAAATCCGTTAC+TGG - chr7.4:42343634-42343653 MS.gene90289:CDS 40.0%
TCTTGGCGAGACTTATGAAA+TGG - chr7.4:42345745-42345764 MS.gene90289:intron 40.0%
TGATGTATCGTATCCCTGTT+TGG - chr7.4:42348052-42348071 MS.gene90289:intron 40.0%
TGGTTTCCATGTTCGTTGAT+AGG + chr7.4:42345714-42345733 None:intergenic 40.0%
TGTTAAGCTTGTGCGCAAAA+TGG + chr7.4:42348189-42348208 None:intergenic 40.0%
TGTTAGTGTCAGTGCTTCAT+AGG + chr7.4:42344291-42344310 None:intergenic 40.0%
TTAACAACTTCCAATCCCTC+AGG + chr7.4:42344189-42344208 None:intergenic 40.0%
TTGTACGAAACATCGTATCG+CGG - chr7.4:42344811-42344830 MS.gene90289:intron 40.0%
! ACGAACTTGGATTGATTCAC+CGG - chr7.4:42346691-42346710 MS.gene90289:intron 40.0%
! AGGTGAACAACTATTTTCCG+CGG + chr7.4:42345582-42345601 None:intergenic 40.0%
! ATCAAGTTGTTCCATTCTGC+AGG - chr7.4:42348117-42348136 MS.gene90289:intron 40.0%
! ATGTTCATTTTCAGCATGCC+CGG + chr7.4:42346033-42346052 None:intergenic 40.0%
! CATGTCATTTATAGCAGAGC+AGG - chr7.4:42345781-42345800 MS.gene90289:intron 40.0%
! GCATCGACATTTCAGATTGA+AGG + chr7.4:42344396-42344415 None:intergenic 40.0%
! GCATTTACATTTTGCAGAGC+TGG - chr7.4:42347101-42347120 MS.gene90289:CDS 40.0%
! TTTCAGATTGAAGGTGTGTC+AGG + chr7.4:42344387-42344406 None:intergenic 40.0%
! TTTCCCCTTTTGCTAGATCA+TGG - chr7.4:42343753-42343772 MS.gene90289:CDS 40.0%
!! AACACTGAAAGAGTGTCTTC+AGG - chr7.4:42347933-42347952 MS.gene90289:intron 40.0%
!! AGACACAGAAGTGCCAAAAT+TGG + chr7.4:42343623-42343642 None:intergenic 40.0%
!! GACATCTTTGGTTTGTAGAG+AGG + chr7.4:42348360-42348379 None:intergenic 40.0%
!! GTTGATTTTCAGTACTCCTG+AGG - chr7.4:42344170-42344189 MS.gene90289:intron 40.0%
!! TGGCTCTGATATCACATCAA+TGG - chr7.4:42345101-42345120 MS.gene90289:intron 40.0%
!! TTTATTTTCAACCGTGTGGC+TGG - chr7.4:42346759-42346778 MS.gene90289:intron 40.0%
!!! GTGCTTTATTTTCAACCGTG+TGG - chr7.4:42346755-42346774 MS.gene90289:intron 40.0%
AACTCTCCAAACCTGCAGAA+TGG + chr7.4:42348131-42348150 None:intergenic 45.0%
ACATGCAGAGAAGAGCTCAT+AGG + chr7.4:42344688-42344707 None:intergenic 45.0%
ACCAGAAGTTCACTCCTAGA+TGG - chr7.4:42348485-42348504 MS.gene90289:intron 45.0%
ACCATCTAGGAGTGAACTTC+TGG + chr7.4:42348489-42348508 None:intergenic 45.0%
ACTGCTTCTAGTAGTAGTGG+TGG - chr7.4:42343565-42343584 MS.gene90289:CDS 45.0%
AGATGGTGTGACGCTTGATT+TGG - chr7.4:42346631-42346650 MS.gene90289:intron 45.0%
AGCCGAGTTGCCAAGAAATT+TGG + chr7.4:42346087-42346106 None:intergenic 45.0%
AGGAACTGAAGATGCTGAAG+AGG - chr7.4:42344218-42344237 MS.gene90289:intron 45.0%
CACAAGCATTTGACGGTGTT+TGG + chr7.4:42347872-42347891 None:intergenic 45.0%
CATCGATGTTATGGCCATAG+AGG - chr7.4:42347282-42347301 MS.gene90289:intron 45.0%
CCATCCAGTGCATATACTGT+AGG + chr7.4:42346852-42346871 None:intergenic 45.0%
CCTACAGTATATGCACTGGA+TGG - chr7.4:42346849-42346868 MS.gene90289:CDS 45.0%
CCTGACAAATTTGACTACGG+GGG - chr7.4:42346724-42346743 MS.gene90289:intron 45.0%
CTATAAATGACATGCCACCG+TGG + chr7.4:42345775-42345794 None:intergenic 45.0%
GATGCTACAAAGAATGGCTG+AGG - chr7.4:42345158-42345177 MS.gene90289:intron 45.0%
GCAATTGCTTGTGGACATTG+CGG + chr7.4:42344876-42344895 None:intergenic 45.0%
GCGATAGCATATCACCTCTA+TGG + chr7.4:42347299-42347318 None:intergenic 45.0%
GCTACTACTTATCTGGATGC+AGG - chr7.4:42346588-42346607 MS.gene90289:intron 45.0%
GCTGAAGAGGAAGCTAAGAA+GGG - chr7.4:42344231-42344250 MS.gene90289:intron 45.0%
GTCTGATGGCAACAACTTCT+TGG + chr7.4:42348227-42348246 None:intergenic 45.0%
GTTATTAATACTCCGGCTGC+CGG - chr7.4:42343857-42343876 MS.gene90289:intron 45.0%
GTTGTTCCATTCTGCAGGTT+TGG - chr7.4:42348122-42348141 MS.gene90289:intron 45.0%
TACAGGAACGGGATAGTTAC+TGG - chr7.4:42345058-42345077 MS.gene90289:CDS 45.0%
TAGCACTAAATCACGTACCG+CGG - chr7.4:42345562-42345581 MS.gene90289:CDS 45.0%
TATCCGCTTGCAATTGCTTG+TGG + chr7.4:42344885-42344904 None:intergenic 45.0%
TATGAAATGGCTAACCACGG+TGG - chr7.4:42345758-42345777 MS.gene90289:intron 45.0%
TCGGCTGATGTATATCCTGT+TGG - chr7.4:42346101-42346120 MS.gene90289:CDS 45.0%
TCGTCTTCGTCCTGATAGAA+TGG - chr7.4:42348249-42348268 MS.gene90289:intron 45.0%
TGCTGAAGAGGAAGCTAAGA+AGG - chr7.4:42344230-42344249 MS.gene90289:intron 45.0%
TGTCCACAAGCAATTGCAAG+CGG - chr7.4:42344879-42344898 MS.gene90289:intron 45.0%
TGTGCGCAAAATGGGTGTAT+TGG + chr7.4:42348180-42348199 None:intergenic 45.0%
TTATTAATACTCCGGCTGCC+GGG - chr7.4:42343858-42343877 MS.gene90289:intron 45.0%
TTCAACACCTTGGGGTGAAT+TGG - chr7.4:42348531-42348550 MS.gene90289:intron 45.0%
TTTCAGTACTCCTGAGGGAT+TGG - chr7.4:42344176-42344195 MS.gene90289:intron 45.0%
! AACTTGGATTGATTCACCGG+GGG - chr7.4:42346694-42346713 MS.gene90289:intron 45.0%
! AGTTACTGGCTGCTACAGTA+TGG + chr7.4:42346885-42346904 None:intergenic 45.0%
! CACACACACACACACACTTT+TGG - chr7.4:42345488-42345507 MS.gene90289:CDS 45.0%
! CGAACTTGGATTGATTCACC+GGG - chr7.4:42346692-42346711 MS.gene90289:intron 45.0%
! GAACCCCCTTTTGACATCTT+TGG + chr7.4:42348372-42348391 None:intergenic 45.0%
! GAACTTGGATTGATTCACCG+GGG - chr7.4:42346693-42346712 MS.gene90289:intron 45.0%
!! AAAATGATTATATTATATTA+GGG + chr7.4:42346998-42347017 None:intergenic 5.0%
ACACATGCAGACGAGTCGTT+CGG + chr7.4:42343973-42343992 None:intergenic 50.0%
ACGGTGTTTGGGAGAGCTTA+CGG + chr7.4:42347860-42347879 None:intergenic 50.0%
AGCTGAGAAGAGAAACCGAG+AGG - chr7.4:42348456-42348475 MS.gene90289:intron 50.0%
AGGAAGCTAAGAAGGGACGA+TGG - chr7.4:42344238-42344257 MS.gene90289:intron 50.0%
CAGAACTATCTACAGCAGCG+CGG + chr7.4:42348591-42348610 None:intergenic 50.0%
CCCCCGTAGTCAAATTTGTC+AGG + chr7.4:42346727-42346746 None:intergenic 50.0%
CTGGAAGTGGTTCTCCTTCA+GGG + chr7.4:42347226-42347245 None:intergenic 50.0%
GAAGGGACGATGGAAAGATG+AGG - chr7.4:42344248-42344267 MS.gene90289:intron 50.0%
GAATTACCAGGTTCCTTCCC+CGG + chr7.4:42343879-42343898 None:intergenic 50.0%
GATAGAATGGCCCTTGAGCA+GGG - chr7.4:42348262-42348281 MS.gene90289:intron 50.0%
GCATCTTCAGTTCCTCCTTC+TGG + chr7.4:42344213-42344232 None:intergenic 50.0%
GCTTCTAGTAGTAGTGGTGG+TGG - chr7.4:42343568-42343587 MS.gene90289:CDS 50.0%
TATTAATACTCCGGCTGCCG+GGG - chr7.4:42343859-42343878 MS.gene90289:intron 50.0%
TCATACCCAAACCAGCCACA+CGG + chr7.4:42346773-42346792 None:intergenic 50.0%
TGATAGAATGGCCCTTGAGC+AGG - chr7.4:42348261-42348280 MS.gene90289:intron 50.0%
TGCTCAAGGGCCATTCTATC+AGG + chr7.4:42348262-42348281 None:intergenic 50.0%
TTACCTGCTCTTCTCGTTGC+CGG + chr7.4:42348302-42348321 None:intergenic 50.0%
TTTGTCAGGACCATATCCCC+CGG + chr7.4:42346713-42346732 None:intergenic 50.0%
! GATTGATTCACCGGGGGATA+TGG - chr7.4:42346700-42346719 MS.gene90289:intron 50.0%
! GGCTGCTACAGTATGGACTA+TGG + chr7.4:42346878-42346897 None:intergenic 50.0%
! TTTCAACCGTGTGGCTGGTT+TGG - chr7.4:42346764-42346783 MS.gene90289:intron 50.0%
!! ACTTCTGGTTCTTCGCCTCT+CGG + chr7.4:42348474-42348493 None:intergenic 50.0%
!! CAACGAGAGTACCTTCCAAC+AGG + chr7.4:42346119-42346138 None:intergenic 50.0%
!! TTCAACCGTGTGGCTGGTTT+GGG - chr7.4:42346765-42346784 MS.gene90289:intron 50.0%
!! TTGTCAAATAGCGGGTGCAG+TGG + chr7.4:42344787-42344806 None:intergenic 50.0%
ACCTCTTTGAGCTCAGTGCC+TGG + chr7.4:42347245-42347264 None:intergenic 55.0%
ATCACCCTCCAATGAGTGCC+GGG - chr7.4:42346012-42346031 MS.gene90289:intron 55.0%
CACATGCAGACGAGTCGTTC+GGG + chr7.4:42343972-42343991 None:intergenic 55.0%
CAGAGCTGGCCGATATGAAG+TGG - chr7.4:42347115-42347134 MS.gene90289:CDS 55.0%
CATCACCCTCCAATGAGTGC+CGG - chr7.4:42346011-42346030 MS.gene90289:intron 55.0%
CCTGAAGGAGAACCACTTCC+AGG - chr7.4:42347224-42347243 MS.gene90289:intron 55.0%
CCTGGAAGTGGTTCTCCTTC+AGG + chr7.4:42347227-42347246 None:intergenic 55.0%
GCTGGCCGATATGAAGTGGA+TGG - chr7.4:42347119-42347138 MS.gene90289:CDS 55.0%
GGACGAAGACGAGAGTCTGA+TGG + chr7.4:42348241-42348260 None:intergenic 55.0%
GGATAGGTCACCCTGCTCAA+GGG + chr7.4:42348275-42348294 None:intergenic 55.0%
GGCCCGAACTCTGAATTACC+AGG + chr7.4:42343891-42343910 None:intergenic 55.0%
TTGAGCTCAGTGCCTGGAAG+TGG + chr7.4:42347239-42347258 None:intergenic 55.0%
TTGTGGACATTGCGGCGCTA+TGG + chr7.4:42344868-42344887 None:intergenic 55.0%
!! TCCAGGCACTGAGCTCAAAG+AGG - chr7.4:42347241-42347260 MS.gene90289:intron 55.0%
ATTGCGGCGCTATGGCGTAG+TGG + chr7.4:42344860-42344879 None:intergenic 60.0%
CAGGGTGACCTATCCGTGTC+CGG - chr7.4:42348280-42348299 MS.gene90289:intron 60.0%
CATGCCCGGCACTCATTGGA+GGG + chr7.4:42346019-42346038 None:intergenic 60.0%
CGGATAGGTCACCCTGCTCA+AGG + chr7.4:42348276-42348295 None:intergenic 60.0%
GCTCTTCTCGTTGCCGGACA+CGG + chr7.4:42348296-42348315 None:intergenic 60.0%
TCAGCATGCCCGGCACTCAT+TGG + chr7.4:42346023-42346042 None:intergenic 60.0%
TCTCGTTGCCGGACACGGAT+AGG + chr7.4:42348291-42348310 None:intergenic 60.0%
TGTCCGGCAACGAGAAGAGC+AGG - chr7.4:42348296-42348315 MS.gene90289:intron 60.0%
AATACTCCGGCTGCCGGGGA+AGG - chr7.4:42343863-42343882 MS.gene90289:intron 65.0%
GCATGCCCGGCACTCATTGG+AGG + chr7.4:42346020-42346039 None:intergenic 65.0%
CAGGTTCCTTCCCCGGCAGC+CGG + chr7.4:42343872-42343891 None:intergenic 70.0%
CGGCTGCCGGGGAAGGAACC+TGG - chr7.4:42343870-42343889 MS.gene90289:intron 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 42343538 42348681 42343538 ID=MS.gene90289
chr7.4 mRNA 42343538 42348681 42343538 ID=MS.gene90289.t1;Parent=MS.gene90289
chr7.4 exon 42348563 42348681 42348563 ID=MS.gene90289.t1.exon1;Parent=MS.gene90289.t1
chr7.4 CDS 42348563 42348681 42348563 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42347950 42348037 42347950 ID=MS.gene90289.t1.exon2;Parent=MS.gene90289.t1
chr7.4 CDS 42347950 42348037 42347950 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42347040 42347156 42347040 ID=MS.gene90289.t1.exon3;Parent=MS.gene90289.t1
chr7.4 CDS 42347040 42347156 42347040 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42346844 42346916 42346844 ID=MS.gene90289.t1.exon4;Parent=MS.gene90289.t1
chr7.4 CDS 42346844 42346916 42346844 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42346417 42346535 42346417 ID=MS.gene90289.t1.exon5;Parent=MS.gene90289.t1
chr7.4 CDS 42346417 42346535 42346417 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42346093 42346214 42346093 ID=MS.gene90289.t1.exon6;Parent=MS.gene90289.t1
chr7.4 CDS 42346093 42346214 42346093 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42345433 42345609 42345433 ID=MS.gene90289.t1.exon7;Parent=MS.gene90289.t1
chr7.4 CDS 42345433 42345609 42345433 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42344957 42345101 42344957 ID=MS.gene90289.t1.exon8;Parent=MS.gene90289.t1
chr7.4 CDS 42344957 42345101 42344957 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42343902 42344080 42343902 ID=MS.gene90289.t1.exon9;Parent=MS.gene90289.t1
chr7.4 CDS 42343902 42344080 42343902 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
chr7.4 exon 42343538 42343781 42343538 ID=MS.gene90289.t1.exon10;Parent=MS.gene90289.t1
chr7.4 CDS 42343538 42343781 42343538 ID=cds.MS.gene90289.t1;Parent=MS.gene90289.t1
Gene Sequence

>MS.gene90289

ATGGCACCAATGGATCCTAAACAAACTACTGCTTCTAGTAGTAGTGGTGGTGGTTTCTTTGCTTCTATTGCTTCTACTTTCTCCAATTTTGGCACTTCTGTGTCTAAATCCGTTACTGGGTATGTTTCTTATCACTCCATAATTTCAAACTTGTTAAATTTATCTTCTTTTTTTTTTTGTAATTTTTTTTATGTGGGTTGCCTTGAAATCATCGATTTCCCCTTTTGCTAGATCATGGAAGTGATTATTGTTTTGGATGACCATCTTTCAAAATTGGGTTTTTTTATATGTATTATGATATGTATAATTTTTTATTGGTGTTATTAATACTCCGGCTGCCGGGGAAGGAACCTGGTAATTCAGAGTTCGGGCCCAACAGTAAGTAAAGTCTGATCAATAATTGTTTTACCTAGAAATCAAGTTTGGATTCTCCCGAACGACTCGTCTGCATGTGTTAGCTGTTTTAACACTTGATAGATGTGTGATAAGCTATTGTGTTTTGAAGTTTGTTTTGATGTTTAAGTATTAGTGGATTTGTAGTTTCGAATTATTTGAGTAATTTCTTGGAGTTTTTGTTGGTTTGGTTTAGTTTAATGAGCTGATGAGATTTATGTTTTTGATTATTTTGTGATGTTGATTTTCAGTACTCCTGAGGGATTGGAAGTTGTTAATCCAGAAGGAGGAACTGAAGATGCTGAAGAGGAAGCTAAGAAGGGACGATGGAAAGATGAGGTATAACACTACTTGTCACCTATGAAGCACTGACACTAACACAGCAGACGCGTTGACACTGATATTAATACGAGAAAATGAAATAATTGAATGTAGCTACATGTGTGTCGAACACCTGACACACCTTCAATCTGAAATGTCGATGCGACATAGCTTATCATAATATTTGTGTTGTATTTATGGTATAGTCAAAAAGATATAGAAGTCACCAATTACAAGGTTTGCATTCATGAGTGTGTGAGTAAATTATGCTGACCAATAAGGAATGAAAGAATGAATCTATCAAGATCCACTGTGGTGATGAAAGTAATCTAGATTATATTATAGAGACAAAAAAATTGGTTTCTATTTTTGTTGTTAGAGATGGGAATGTGCATATTGAAACATGGTGTTGTCTACTTTGTACTTCAATCAACCTATGAGCTCTTCTCTGCATGTTAAAACAGTTTTCTCAATTGCGGATCGTAGAAAATATTAGTTTGTTCAAATTCAGCTACAATATAGTGCTATAGTGCCACTGCACCCGCTATTTGACAAAACTTTGTACGAAACATCGTATCGCGGAACACTAGTGAATTGTTCAAATACCACTACGCCATAGCGCCGCAATGTCCACAAGCAATTGCAAGCGGATAATATGTCATGCAAACAAATGGTGGCATTGATTATCTGAATACATTTATCTATCTCATGGTGGATGGGAGAAAAATAAATTTCTTCTTCTTTACATAATTATAATTACAACGCATTATTTCTGTTGTTTATCCCTCAAGTGTTCTTTTGTACATTACAGGAACGGGATAGTTACTGGAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCGTTTTTGAGCCAATGACGATGCTACAAAGAATGGCTGAGGTTTGTGATATATCACATATGTACTTTGTTGCATTTGTTTCGTGCTATTATTACATTTGAACGAGTTATTTTAGCAAATGTTCTATATGTTAGAAACTCATTGAGTGTTATCTAATTTCACAGCTCATGGAGTACTCTTACCTATTAGATATGGCGGATGAGACCGATGATCCATACATGAGACTTGTATATGCCTGTAAGCATCATTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATACACACACACACACACACACACACACTTTTGGAAAATTTCAAGTTCCGCTACACTACAGTATTAACCAGAATTTGATAATACTTAGCACTAAATCACGTACCGCGGAAAATAGTTGTTCACCTAAATTCCACTACACTGTATCTCACATACACAACATTTGGGCATACATTGCATGGAATATGACCTTATAGATGCTTTTTGCAGCATCATTCTTTATATCTGTATACTATGCCTATCAACGAACATGGAAACCATTCAATCCAATTCTTGGCGAGACTTATGAAATGGCTAACCACGGTGGCATGTCATTTATAGCAGAGCAGGTGTGTTTAATGTCCTGCTTATTTTCTTTCTTCAGTTATTTTAAAGAAAATGCCGATTTCACCAATTTTACATGCCTCTCTTTGTCATGTATTTTTTTACAATGGCTCTGGAATATGCATAGTTTTCACAGTTATTTTGTAATTCTCTTATATTAAGTATGATTTTTTACTCTTGTTCACTTATAAAAACAAATTGCTACAGGTCTGTCATCACCCTCCAATGAGTGCCGGGCATGCTGAAAATGAACATTTCACTTATGATATAACATCAAAACTGAAAACCAAATTTCTTGGCAACTCGGCTGATGTATATCCTGTTGGAAGGTACTCTCGTTGTTCCATTTTAGTTGCCGTTTTAAGGCTATTTATACATATCAAGAAAACCAATACATTTTGTTACTTTTGATTGAGTTATTGTTTTTTTCCTTTCATATAATAATCTTAACTGTTTATCACTCCACATATTCCTCTCTCTGCAATAAGTTGTTCAAGGTATTATTGACAAAACAACAGTTAAAAGAGGACCTGAGGGTGTAATACTTATTCTGTCTTTCATCTTTTATTTAAGTTTGGGGATTGTTAGTGGCTTCACATGTTCACTCAAAAAAATATTAATTGCCAATGGATTTTAAACTGTGTATTATATGGATAAGGAGGTTCCGTATGTTGTACTTCAATTTAATCGGTATTTTTTTTTTTGTTTGTTTTTTTGTAATGTTGGATATCTATGTAAATTTATTTCTTTAGTAAGCATTTTTGAAGTTGTTGAATGCATATATAAACGCGCTACTACTTATCTGGATGCAGGACACGTGTAACACTCAAAAGAGATGGTGTGACGCTTGATTTGGTGCCCCCACCTACAAAAATTAGCAACTTGATTTTTGGACGAACTTGGATTGATTCACCGGGGGATATGGTCCTGACAAATTTGACTACGGGGGACAAAGTCGTGCTTTATTTTCAACCGTGTGGCTGGTTTGGGTATGACTACTTTCTCCTAAATTATCGCTTATTTCTACAACATACATTCACTTCACCTGTAACCTACAGTATATGCACTGGATGGATTCCATAGTCCATACTGTAGCAGCCAGTAACTTCTTATTTATGCATTGCATTTCTTTTAGTTTACTTGTGGCTACGCAATTCAGTGTCCATTTTTTTGCGATAAATGATGTTATTGTTATATCCCTAATATAATATAATCATTTTGCATATTTGTCTGTCAATTACAGTTACTTGCTCCATATGTGAAGTATTAGTTTCATACTTCTTTAGTAACTTAAAGTTAAAAGGCATTTACATTTTGCAGAGCTGGCCGATATGAAGTGGATGGATATGTGTATAATTCTTCTGAAGAACCAAAGATTCTAATAACTGGAAAATGGAATGAAGCTTTGAGTTATCAAGTTTGTGACCCTGAAGGAGAACCACTTCCAGGCACTGAGCTCAAAGAGGTTAGTAGTTCAACTCTTTCATCGATGTTATGGCCATAGAGGTGATATGCTATCGCCTAACAGCACACTCTTTTAGATTACGTTTTTACAATTCTTCATGAAATTGTAGTAAAAATTTGTGACTTCTCATTAAGCCTGATATGCTTTGGAAACAACTTTTAGGTAAGTCACAAATTTCTGAAGTTTGTTTGCAAAGCATATGATGCTTTGGAGATGATTAAATTGGGATTATATAACAGGTTTAGTTCCCGTAGCCAAATTGAATCAACTAATTCTTCCTGAAGTCAAATTTAACTTGATACATTTGTTTGAATTCTTAGTTATGGAAATTAGAATATATACTATACAAAGGGCCTGTTTGGATTAACATCTTAATTAAGCGCTTATAGGATACACACTTATTATACAAGTATTTAAGTGTAAGCTGTTTCTGTCGCTGTTTTTATCGTAAAAAAAGGGTAAGCTGTTTCTGTAGTCAGAGAAAATATGGTCAAACTGTTTCATATGAACAATAGGCTGTTTTCATAAGCTACCTTAGAAAGCGTATCAGCATTAGCTATATAATAATTGTATTTAATATATCATAAATTGTTTCCGTAAGCTCTCCCAAACACCGTCAAATGCTTGTGTTAGTAGATAAGCCCAAATAATTTGTTCATAAGTTAATCCAAACACTGAAAGAGTGTCTTCAGGAAGCTTTTAAACGAGTACTATATTTTAATACATTTCTTAACTCAAGTCTTAGCTCTTCATTCTTCGTTGCATGTAAATTGTATAATTTTAAGGATATGATGTATCGTATCCCTGTTTGGTGTGATTTACTGCTTCGTTCTGCAAACTCTTAATTATTTTTAATCAAGTTGTTCCATTCTGCAGGTTTGGAGAGTTGCTGAAACTCCTAAAAAGGACAAATTCCAATACACCCATTTTGCGCACAAGCTTAACAGCTTTGATACTGCTCCCAAGAAGTTGTTGCCATCAGACTCTCGTCTTCGTCCTGATAGAATGGCCCTTGAGCAGGGTGACCTATCCGTGTCCGGCAACGAGAAGAGCAGGTAACTAGCTAGCTAACAAACTAACTAACTGCTATTCACCCTCTCTACAAACCAAAGATGTCAAAAGGGGGTTCAAAGTATTGTTCTCTTACATTATGTGCACTTAAACTTATTTTTCAGTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCGAAGAACCAGAAGTTCACTCCTAGATGGTTTGATCTGACAGAGGAAGTAACTTCAACACCTTGGGGTGAATTGGAAGTTTACCAATATAACGGTAAATATACAGAACACCGCGCTGCTGTAGATAGTTCTGATTGCATTGAAGAGCCTGAAAATAGACCAGAATTCAATCCTTGGCAATTTGATAATTTGGAGGCTGAATAG

Protein sequence

>MS.gene90289.t1

MAPMDPKQTTASSSSGGGFFASIASTFSNFGTSVSKSVTGTPEGLEVVNPEGGTEDAEEEAKKGRWKDEERDSYWKMMQKYVGSDITSMVTLPVIVFEPMTMLQRMAELMEYSYLLDMADETDDPYMRLVYASSFFISVYYAYQRTWKPFNPILGETYEMANHGGMSFIAEQVCHHPPMSAGHAENEHFTYDITSKLKTKFLGNSADVYPVGRTRVTLKRDGVTLDLVPPPTKISNLIFGRTWIDSPGDMVLTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYNSSEEPKILITGKWNEALSYQVCDPEGEPLPGTELKEVWRVAETPKKDKFQYTHFAHKLNSFDTAPKKLLPSDSRLRPDRMALEQGDLSVSGNEKSSLEERQRAEKRNREAKNQKFTPRWFDLTEEVTSTPWGELEVYQYNGKYTEHRAAVDSSDCIEEPENRPEFNPWQFDNLEAE