AlfalfaGEDB | MS.gene90485

M. sativa cultivar XinJiangDaYe / MS.gene90485

KEGG: K09284
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90485.t1	XP_013457433.1	97.8	322	7	0	26	347	130	451	7.30E-180	639.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90485.t1	P47927	83.8	234	31	3	26	252	80	313	1.9e-107	390.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90485.t1	A0A072UNS0	97.8	322	7	0	26	347	130	451	5.3e-180	639.8

TFs/TRs:

Gene ID	Type	Classification
MS.gene90485.t1	TF	AP2/ERF-AP2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049825	MS.gene90485	0.824666	7.13E-54	-1.69E-46
MS.gene049873	MS.gene90485	0.83473	2.53E-56	-1.69E-46
MS.gene050355	MS.gene90485	0.819875	9.23E-53	-1.69E-46
MS.gene053226	MS.gene90485	0.816677	4.89E-52	-1.69E-46
MS.gene057414	MS.gene90485	0.81019	1.30E-50	-1.69E-46
MS.gene057693	MS.gene90485	0.801122	1.05E-48	-1.69E-46
MS.gene058037	MS.gene90485	0.806632	7.49E-50	-1.69E-46
MS.gene058625	MS.gene90485	0.829612	4.67E-55	-1.69E-46
MS.gene059272	MS.gene90485	0.800782	1.23E-48	-1.69E-46
MS.gene059317	MS.gene90485	0.81434	1.62E-51	-1.69E-46
MS.gene05954	MS.gene90485	0.821475	3.96E-53	-1.69E-46
MS.gene060322	MS.gene90485	0.828732	7.63E-55	-1.69E-46
MS.gene060572	MS.gene90485	0.815801	7.68E-52	-1.69E-46
MS.gene060586	MS.gene90485	0.821343	4.25E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90485.t1	MTR_4g094868	97.695	347	8	0	1	347	105	451	0.0	718
MS.gene90485.t1	MTR_4g094868	97.414	348	8	1	1	347	105	452	0.0	714
MS.gene90485.t1	MTR_4g094868	97.665	257	6	0	91	347	39	295	0.0	532
MS.gene90485.t1	MTR_5g016810	78.529	340	48	7	26	347	111	443	1.86e-164	469
MS.gene90485.t1	MTR_5g016810	76.879	346	49	8	26	347	111	449	1.65e-161	462
MS.gene90485.t1	MTR_2g093060	67.339	248	76	3	5	251	69	312	1.17e-96	295
MS.gene90485.t1	MTR_7g100590	78.641	206	43	1	43	248	110	314	1.17e-96	295
MS.gene90485.t1	MTR_2g093060	67.339	248	76	3	5	251	69	312	1.31e-96	295
MS.gene90485.t1	MTR_4g061200	76.699	206	47	1	49	254	108	312	3.17e-95	288
MS.gene90485.t1	MTR_4g061200	76.699	206	47	1	49	254	108	312	7.89e-94	287
MS.gene90485.t1	MTR_2g093060	62.097	248	74	4	5	251	69	297	1.44e-81	255
MS.gene90485.t1	MTR_4g061200	70.388	206	45	2	49	254	108	297	4.87e-80	249
MS.gene90485.t1	MTR_4g061200	70.388	206	45	2	49	254	108	297	9.23e-79	248
MS.gene90485.t1	MTR_7g061190	77.124	153	33	1	94	246	3	153	1.74e-72	222
MS.gene90485.t1	MTR_7g061190	45.000	80	41	2	59	136	60	138	4.85e-11	60.8
MS.gene90485.t1	MTR_4g127930	51.031	194	84	3	44	226	134	327	4.72e-53	182
MS.gene90485.t1	MTR_5g015070	53.672	177	71	3	69	234	249	425	7.88e-53	182
MS.gene90485.t1	MTR_8g068510	41.353	266	134	7	34	287	98	353	5.33e-52	177
MS.gene90485.t1	MTR_2g098180	53.846	169	67	3	69	226	167	335	2.29e-51	178
MS.gene90485.t1	MTR_4g065370	47.059	204	90	5	41	226	128	331	3.91e-51	178
MS.gene90485.t1	MTR_4g130270	51.724	174	73	3	63	225	41	214	6.79e-51	173
MS.gene90485.t1	MTR_7g080460	53.846	169	67	3	69	226	259	427	1.32e-50	179
MS.gene90485.t1	MTR_7g080460	42.857	77	42	1	59	133	351	427	9.25e-11	63.5
MS.gene90485.t1	MTR_3g103460	54.167	168	69	3	69	228	310	477	2.91e-50	177
MS.gene90485.t1	MTR_8g044070	46.637	223	94	5	37	237	20	239	1.19e-49	171
MS.gene90485.t1	MTR_4g097520	53.571	168	70	3	69	228	310	477	1.52e-49	176
MS.gene90485.t1	MTR_4g097520	46.250	80	40	2	70	146	410	489	1.85e-11	65.5
MS.gene90485.t1	MTR_8g020510	50.538	186	83	4	50	226	228	413	3.68e-49	173
MS.gene90485.t1	MTR_1g017400	52.976	168	71	3	69	228	312	479	1.12e-48	173
MS.gene90485.t1	MTR_1g049140	56.633	196	63	8	57	248	121	298	5.37e-48	166
MS.gene90485.t1	MTR_1g049140	56.633	196	63	8	57	248	121	298	1.34e-47	164
MS.gene90485.t1	MTR_6g011490	50.292	171	71	3	73	232	65	232	1.51e-47	165
MS.gene90485.t1	MTR_7g009410	51.190	168	68	3	69	225	65	229	3.26e-47	164
MS.gene90485.t1	MTR_1g049140	71.429	126	33	3	57	180	121	245	1.50e-45	156
MS.gene90485.t1	MTR_8g044040	48.936	188	88	2	50	229	37	224	1.51e-44	157
MS.gene90485.t1	MTR_8g044040	46.753	77	39	2	71	145	157	233	1.90e-11	65.1
MS.gene90485.t1	MTR_4g007770	47.805	205	88	4	63	248	30	234	5.51e-44	154
MS.gene90485.t1	MTR_3g090510	80.952	105	20	0	100	204	163	267	1.24e-43	155
MS.gene90485.t1	MTR_8g468920	40.288	278	132	7	69	321	69	337	1.36e-43	155
MS.gene90485.t1	MTR_5g031880	52.047	171	68	4	69	228	224	391	9.26e-40	147
MS.gene90485.t1	MTR_2g460730	49.444	180	78	4	59	225	32	211	1.04e-39	144
MS.gene90485.t1	MTR_7g060560	77.143	105	23	1	100	204	156	259	3.32e-39	143
MS.gene90485.t1	MTR_7g055620	95.455	44	2	0	146	189	6	49	1.38e-22	97.8
MS.gene90485.t1	MTR_7g091390	46.923	130	52	3	69	188	57	179	6.44e-21	93.2
MS.gene90485.t1	MTR_1g037030	77.083	48	11	0	138	185	118	165	2.34e-18	82.8
MS.gene90485.t1	MTR_7g091390	48.387	93	44	1	96	188	3	91	1.85e-14	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90485.t1	AT4G36920	83.122	237	33	3	23	252	77	313	2.60e-123	362
MS.gene90485.t1	AT4G36920	83.122	237	33	3	23	252	77	313	2.60e-123	362
MS.gene90485.t1	AT5G67180	77.293	229	45	4	27	253	53	276	2.67e-103	308
MS.gene90485.t1	AT5G67180	77.293	229	45	4	27	253	53	276	3.05e-103	306
MS.gene90485.t1	AT5G67180	80.296	203	36	2	27	228	53	252	1.10e-97	291
MS.gene90485.t1	AT2G28550	71.861	231	64	1	59	289	140	369	2.85e-93	286
MS.gene90485.t1	AT5G67180	79.330	179	33	2	27	204	53	228	1.28e-79	244
MS.gene90485.t1	AT2G28550	66.234	231	62	2	59	289	140	354	3.03e-78	247
MS.gene90485.t1	AT2G28550	90.972	144	13	0	59	202	140	283	1.89e-77	241
MS.gene90485.t1	AT2G28550	91.473	129	11	0	59	187	140	268	5.93e-67	212
MS.gene90485.t1	AT2G28550	91.473	129	11	0	59	187	140	268	5.93e-67	212
MS.gene90485.t1	AT5G60120	61.421	197	54	2	56	252	144	318	1.65e-64	210
MS.gene90485.t1	AT5G60120	61.421	197	54	2	56	252	144	318	1.65e-64	210
MS.gene90485.t1	AT5G60120	61.421	197	54	2	56	252	144	318	1.65e-64	210
MS.gene90485.t1	AT5G60120	61.421	197	54	2	56	252	144	318	9.89e-64	210
MS.gene90485.t1	AT5G60120	61.421	197	54	2	56	252	144	318	1.42e-63	210
MS.gene90485.t1	AT5G60120	61.421	197	54	2	56	252	144	318	2.69e-63	209
MS.gene90485.t1	AT2G28550	58.209	201	68	2	89	289	4	188	2.20e-57	188
MS.gene90485.t1	AT5G57390	40.566	318	133	10	44	309	46	359	4.31e-56	189
MS.gene90485.t1	AT5G57390	40.566	318	133	10	44	309	164	477	3.31e-55	189
MS.gene90485.t1	AT1G72570	53.254	169	68	3	69	226	220	388	1.95e-52	179
MS.gene90485.t1	AT1G72570	43.373	83	43	2	59	139	312	392	4.81e-11	63.9
MS.gene90485.t1	AT4G37750	53.254	169	68	2	69	226	280	448	1.03e-51	180
MS.gene90485.t1	AT4G37750	44.304	79	42	1	59	135	372	450	2.92e-11	65.1
MS.gene90485.t1	AT1G51190	53.846	169	67	3	69	226	187	355	1.13e-51	180
MS.gene90485.t1	AT3G20840	52.663	169	69	3	69	226	178	346	2.50e-50	177
MS.gene90485.t1	AT5G17430	44.643	224	111	4	60	270	136	359	1.11e-49	174
MS.gene90485.t1	AT5G17430	44.643	224	111	4	60	270	198	421	3.30e-49	174
MS.gene90485.t1	AT2G39250	76.636	107	25	0	60	166	96	202	2.54e-48	163
MS.gene90485.t1	AT2G39250	52.792	197	62	5	60	255	96	262	3.73e-48	165
MS.gene90485.t1	AT3G54320	53.488	172	69	2	69	229	62	233	5.78e-45	159
MS.gene90485.t1	AT5G65510	51.031	194	80	5	69	247	170	363	5.87e-45	159
MS.gene90485.t1	AT3G54320	53.488	172	69	2	69	229	62	233	7.88e-45	159
MS.gene90485.t1	AT5G65510	51.031	194	80	5	69	247	228	421	1.23e-44	160
MS.gene90485.t1	AT5G65510	51.031	194	80	5	69	247	228	421	1.23e-44	160
MS.gene90485.t1	AT3G54990	72.000	125	35	0	54	178	104	228	2.05e-44	153
MS.gene90485.t1	AT3G54990	62.893	159	45	2	54	212	104	248	5.37e-44	155
MS.gene90485.t1	AT5G10510	50.000	202	86	5	69	255	227	428	7.51e-44	159
MS.gene90485.t1	AT5G10510	50.000	202	86	5	69	255	227	428	7.51e-44	159
MS.gene90485.t1	AT5G10510	50.000	202	86	5	69	255	250	451	1.33e-43	158
MS.gene90485.t1	AT5G10510	50.000	202	86	5	69	255	265	466	1.43e-43	158
MS.gene90485.t1	AT5G10510	50.000	202	86	5	69	255	265	466	1.43e-43	158
MS.gene90485.t1	AT1G79700	53.409	176	71	2	63	227	43	218	6.24e-40	143
MS.gene90485.t1	AT5G10510	48.515	202	86	6	69	255	227	425	1.64e-39	147
MS.gene90485.t1	AT5G65510	51.825	137	55	3	69	194	170	306	2.31e-39	142
MS.gene90485.t1	AT1G16060	53.039	181	70	3	56	225	46	222	1.44e-38	140
MS.gene90485.t1	AT5G10510	44.144	222	89	6	69	255	265	486	8.78e-37	140
MS.gene90485.t1	AT3G54320	54.074	135	61	1	96	229	33	167	5.77e-33	126
MS.gene90485.t1	AT3G54320	54.074	135	61	1	96	229	33	167	5.77e-33	126
MS.gene90485.t1	AT1G79700	50.568	176	66	3	63	227	43	208	1.25e-32	124
MS.gene90485.t1	AT1G79700	54.348	138	62	1	91	227	5	142	2.66e-28	110
MS.gene90485.t1	AT1G16060	55.147	136	60	1	91	225	17	152	1.82e-27	109
MS.gene90485.t1	AT1G79700	54.198	131	59	1	98	227	6	136	6.59e-26	103
MS.gene90485.t1	AT2G41710	49.231	130	52	2	69	188	67	192	3.64e-25	105
MS.gene90485.t1	AT2G41710	49.231	130	52	2	69	188	67	192	5.23e-25	105
MS.gene90485.t1	AT2G41710	47.407	135	52	3	69	188	67	197	6.77e-23	99.4
MS.gene90485.t1	AT2G41710	46.667	120	50	2	79	188	112	227	4.14e-20	91.3
MS.gene90485.t1	AT3G54320	58.696	92	37	1	139	229	1	92	4.44e-20	89.4
MS.gene90485.t1	AT1G16060	57.955	88	36	1	139	225	1	88	5.51e-18	82.0
MS.gene90485.t1	AT1G16060	57.955	88	36	1	139	225	1	88	5.51e-18	82.0
MS.gene90485.t1	AT1G16060	57.955	88	36	1	139	225	1	88	5.51e-18	82.0
MS.gene90485.t1	AT1G16060	57.955	88	36	1	139	225	1	88	5.51e-18	82.0
MS.gene90485.t1	AT1G03800	40.541	111	56	3	164	265	52	161	2.05e-12	66.6
MS.gene90485.t1	AT3G25730	36.207	116	68	3	42	155	32	143	1.12e-11	65.5
MS.gene90485.t1	AT2G47520	44.444	90	45	3	50	135	25	113	4.70e-11	61.2

Find 67 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTCACTAGGTACGTTTATC+TGG	0.170714	8.3:+23497577	MS.gene90485:intron
TTTGGTCTATTATATGGTTT+GGG	0.211093	8.3:-23498224	None:intergenic
CACAATTTGGATTTAAGTTT+GGG	0.236642	8.3:+23497953	MS.gene90485:CDS
ATGTTGTTTGGTCTATTATA+TGG	0.273972	8.3:-23498230	None:intergenic
TCACAATTTGGATTTAAGTT+TGG	0.292491	8.3:+23497952	MS.gene90485:CDS
CCATATGCTTCAATGTTGTT+TGG	0.307187	8.3:-23498242	None:intergenic
TAATGGTGGTGATCACAATT+TGG	0.310345	8.3:+23497940	MS.gene90485:CDS
AGAGTACCCACATGAAAATT+TGG	0.316290	8.3:-23498407	None:intergenic
ATGCATCTGATCAATCTAAT+TGG	0.325045	8.3:+23498017	MS.gene90485:CDS
GTTTGGTCTATTATATGGTT+TGG	0.335952	8.3:-23498225	None:intergenic
ATTTGTGACTGATCTCTAAA+AGG	0.350712	8.3:-23498356	None:intergenic
GACAACGAGCTTAATAATTC+TGG	0.352333	8.3:+23497793	MS.gene90485:CDS
AGAGCAGCTATTAAGTTTAG+AGG	0.357329	8.3:+23497197	MS.gene90485:CDS
ATATATGCTTGGATCAAAAT+TGG	0.369931	8.3:-23497770	None:intergenic
GCATCTTCATGTGGTGGAAA+TGG	0.384567	8.3:+23496531	MS.gene90485:CDS
GTCGATGGGAATCACATATA+TGG	0.385048	8.3:+23496748	MS.gene90485:CDS
TGATCACCACCATTACTTGC+TGG	0.391459	8.3:-23497932	None:intergenic
GGATCAAGAGTCTGATGATA+TGG	0.408466	8.3:+23496503	MS.gene90485:CDS
CCAAACAACATTGAAGCATA+TGG	0.411479	8.3:+23498242	MS.gene90485:CDS
TGGAAGATGGGAGGCAAGAA+TGG	0.436163	8.3:+23497471	MS.gene90485:CDS
ATCAATCTAATTGGCAGCAT+GGG	0.439853	8.3:+23498026	MS.gene90485:CDS
TTTGCTTGAGTGTTATTGAT+AGG	0.455616	8.3:-23497992	None:intergenic
TTCACTAGGTACGTTTATCT+GGG	0.456768	8.3:+23497578	MS.gene90485:intron
CTATATTTAGAGCTTCCTCT+TGG	0.461670	8.3:-23497427	None:intergenic
AGCTCGTTGTCATATATGCT+TGG	0.465069	8.3:-23497781	None:intergenic
TATTGTGAACTTCTTGACCT+TGG	0.483752	8.3:-23496696	None:intergenic
TGTGGAAAACAAGTGTATCT+TGG	0.489731	8.3:+23496882	MS.gene90485:CDS
TTTCCTCGTGCTCATTGGGT+AGG	0.490632	8.3:+23496576	MS.gene90485:CDS
TTATGAAGAAGATTTAAAGC+AGG	0.500170	8.3:+23497253	MS.gene90485:CDS
AATAAAATGCAATGGTAAAG+AGG	0.502814	8.3:+23497741	MS.gene90485:CDS
CATTGCACAAATGTGGAAGA+TGG	0.503002	8.3:+23497458	MS.gene90485:CDS
CATTTGATGATGAAGAATGA+AGG	0.508677	8.3:-23498316	None:intergenic
TCAAGAAGTTCACAATATAG+AGG	0.514827	8.3:+23496702	MS.gene90485:CDS
TCTCATAATTGCAGGGATTG+TGG	0.516374	8.3:+23496864	MS.gene90485:intron
TCATCAGACTCTTGATCCAT+AGG	0.519737	8.3:-23496498	None:intergenic
TTTACAGAAGAACAGGTCGA+TGG	0.544216	8.3:+23496733	MS.gene90485:CDS
GATCAATCTAATTGGCAGCA+TGG	0.545229	8.3:+23498025	MS.gene90485:CDS
AGAGGAAGCTCTAAATATAG+AGG	0.546165	8.3:+23497430	MS.gene90485:CDS
GGAAGATGGGAGGCAAGAAT+GGG	0.561290	8.3:+23497472	MS.gene90485:CDS
CCTATGAAGAAAAGTAGAAG+AGG	0.565663	8.3:+23496672	MS.gene90485:CDS
ATTGCACAAATGTGGAAGAT+GGG	0.567084	8.3:+23497459	MS.gene90485:CDS
CAATCAGAAACACTTGGAGG+TGG	0.568158	8.3:+23496612	MS.gene90485:CDS
GTACTTCGTCGACAAAGCAC+TGG	0.569473	8.3:+23497400	MS.gene90485:CDS
TTACAGAAGAACAGGTCGAT+GGG	0.572290	8.3:+23496734	MS.gene90485:CDS
GGTGTTACATTGCACAAATG+TGG	0.575043	8.3:+23497451	MS.gene90485:CDS
TGTCAATCAGAAACACTTGG+AGG	0.577906	8.3:+23496609	MS.gene90485:CDS
TTGGTCTATTATATGGTTTG+GGG	0.592153	8.3:-23498223	None:intergenic
TCAATCTAATTGGCAGCATG+GGG	0.594017	8.3:+23498027	MS.gene90485:CDS
ACACTGAGGTTGAAGCTGCA+AGG	0.600079	8.3:+23497609	MS.gene90485:CDS
AAAGCAGCAATAAAATGCAA+TGG	0.607563	8.3:+23497733	MS.gene90485:CDS
GCAGCAGAACCAGCAAGTAA+TGG	0.608715	8.3:+23497923	MS.gene90485:intron
TCTGGGCTTGTTTGACACTG+AGG	0.608889	8.3:+23497595	MS.gene90485:CDS
GTTATAGCATCTTCATGTGG+TGG	0.609279	8.3:+23496525	MS.gene90485:CDS
GCATATGGAAGGGACTTGCA+TGG	0.609746	8.3:+23498257	MS.gene90485:CDS
ACACAGCACATGCAGCTGCT+CGG	0.611926	8.3:+23497078	MS.gene90485:CDS
ACAACATTGAAGCATATGGA+AGG	0.616936	8.3:+23498246	MS.gene90485:CDS
GCAGAACCAGCAAGTAATGG+TGG	0.618774	8.3:+23497926	MS.gene90485:intron
GCTTGGATCAAAATTGGTGA+CGG	0.623409	8.3:-23497764	None:intergenic
CAACATTGAAGCATATGGAA+GGG	0.627146	8.3:+23498247	MS.gene90485:CDS
GTACCCACATGAAAATTTGG+TGG	0.636697	8.3:-23498404	None:intergenic
TACCCACATGAAAATTTGGT+GGG	0.637961	8.3:-23498403	None:intergenic
GCACAAATGTGGAAGATGGG+AGG	0.665861	8.3:+23497462	MS.gene90485:CDS
ATGGAGAGAGTGAAGCATTG+AGG	0.677397	8.3:+23498276	MS.gene90485:CDS
AGAAAAGTAGAAGAGGACCA+AGG	0.691660	8.3:+23496679	MS.gene90485:CDS
ACACCTACCCAATGAGCACG+AGG	0.695607	8.3:-23496579	None:intergenic
ATGGTTATAGCATCTTCATG+TGG	0.723044	8.3:+23496522	MS.gene90485:CDS
CAATCTAATTGGCAGCATGG+GGG	0.724886	8.3:+23498028	MS.gene90485:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ACAAAAAATGTTTAAATATT+AGG	-	chr8.3:23498168-23498187	None:intergenic	10.0%
!!!	AAAAAAATTGATTCTTTTTT+TGG	+	chr8.3:23496826-23496845	MS.gene90485:intron	10.0%
!!!	AAAAGAATCAATTTTTTTTA+AGG	-	chr8.3:23496824-23496843	None:intergenic	10.0%
!!!	AATTTTTTTTTTTTGACAAA+AGG	+	chr8.3:23498074-23498093	MS.gene90485:intron	10.0%
!!!	ATTTTATTTAATTTCAGTTA+TGG	+	chr8.3:23497129-23497148	MS.gene90485:intron	10.0%
!!!	TGAAATTGAATTAATTTTTT+TGG	+	chr8.3:23497326-23497345	MS.gene90485:intron	10.0%
!!!	TTTTATTTAATTTCAGTTAT+GGG	+	chr8.3:23497130-23497149	MS.gene90485:intron	10.0%
!!	AAAAATTATTATTACACCTT+AGG	-	chr8.3:23498061-23498080	None:intergenic	15.0%
!!!	GAATAATTGTTGTATTATTT+TGG	+	chr8.3:23496940-23496959	MS.gene90485:intron	15.0%
!!!	GTTATAACATGATTAATTTT+AGG	+	chr8.3:23497660-23497679	MS.gene90485:intron	15.0%
!!!	TTTATTTAATTTCAGTTATG+GGG	+	chr8.3:23497131-23497150	MS.gene90485:intron	15.0%
!!!	TTTTAAGGTTTACATTTTTA+AGG	-	chr8.3:23496809-23496828	None:intergenic	15.0%
!!!	AATTATGATTTTCATTCACT+AGG	+	chr8.3:23497564-23497583	MS.gene90485:intron	20.0%
!!!	AATTCTGGTATATTTTGTTA+TGG	+	chr8.3:23497808-23497827	MS.gene90485:intron	20.0%
!!!	AATTTTTTTTGCTTCTTTTG+TGG	+	chr8.3:23496966-23496985	MS.gene90485:intron	20.0%
!!!	AGATGTCATTTTTTACTATA+GGG	+	chr8.3:23497702-23497721	MS.gene90485:intron	20.0%
!!!	TAGATGTCATTTTTTACTAT+AGG	+	chr8.3:23497701-23497720	MS.gene90485:intron	20.0%
!	AATAAAATGCAATGGTAAAG+AGG	+	chr8.3:23497741-23497760	MS.gene90485:CDS	25.0%
!	ATATATGCTTGGATCAAAAT+TGG	-	chr8.3:23497773-23497792	None:intergenic	25.0%
!	TTGTCTGGATAAATTTGTAT+AGG	+	chr8.3:23497047-23497066	MS.gene90485:intron	25.0%
!	TTTGGTCTATTATATGGTTT+GGG	-	chr8.3:23498227-23498246	None:intergenic	25.0%
!!	ATGTTGTTTGGTCTATTATA+TGG	-	chr8.3:23498233-23498252	None:intergenic	25.0%
!!	CACAATTTGGATTTAAGTTT+GGG	+	chr8.3:23497953-23497972	MS.gene90485:CDS	25.0%
!!	TCACAATTTGGATTTAAGTT+TGG	+	chr8.3:23497952-23497971	MS.gene90485:CDS	25.0%
!!	TTATGAAGAAGATTTAAAGC+AGG	+	chr8.3:23497253-23497272	MS.gene90485:CDS	25.0%
!!!	AGACAAGAGTTAAGATTTTT+TGG	+	chr8.3:23497007-23497026	MS.gene90485:intron	25.0%
!!!	AGGTTTACATTTTTAAGGTA+AGG	-	chr8.3:23496804-23496823	None:intergenic	25.0%
	AAAATAGACAACGTAAGCAA+AGG	-	chr8.3:23497640-23497659	None:intergenic	30.0%
	AAAGCAGCAATAAAATGCAA+TGG	+	chr8.3:23497733-23497752	MS.gene90485:CDS	30.0%
	ATGCATCTGATCAATCTAAT+TGG	+	chr8.3:23498017-23498036	MS.gene90485:CDS	30.0%
	ATTTGTGACTGATCTCTAAA+AGG	-	chr8.3:23498359-23498378	None:intergenic	30.0%
	GTTTGGTCTATTATATGGTT+TGG	-	chr8.3:23498228-23498247	None:intergenic	30.0%
	TCAAGAAGTTCACAATATAG+AGG	+	chr8.3:23496702-23496721	MS.gene90485:CDS	30.0%
	TCTGGATAAATTTGTATAGG+TGG	+	chr8.3:23497050-23497069	MS.gene90485:intron	30.0%
	TTGGTCTATTATATGGTTTG+GGG	-	chr8.3:23498226-23498245	None:intergenic	30.0%
!	TTTGCTTGAGTGTTATTGAT+AGG	-	chr8.3:23497995-23498014	None:intergenic	30.0%
!	TTTTGTCAATCAGAAACACT+TGG	+	chr8.3:23496606-23496625	MS.gene90485:CDS	30.0%
!!	ACTGAATAGATTGTTTTGTC+TGG	+	chr8.3:23497032-23497051	MS.gene90485:intron	30.0%
!!	CATTTGATGATGAAGAATGA+AGG	-	chr8.3:23498319-23498338	None:intergenic	30.0%
!!!	GTTACTTTTTACAGAAGAAC+AGG	+	chr8.3:23496726-23496745	MS.gene90485:CDS	30.0%
	ACAACATTGAAGCATATGGA+AGG	+	chr8.3:23498246-23498265	MS.gene90485:CDS	35.0%
	AGAGCAGCTATTAAGTTTAG+AGG	+	chr8.3:23497197-23497216	MS.gene90485:CDS	35.0%
	ATCAATCTAATTGGCAGCAT+GGG	+	chr8.3:23498026-23498045	MS.gene90485:CDS	35.0%
	ATGGTTATAGCATCTTCATG+TGG	+	chr8.3:23496522-23496541	MS.gene90485:CDS	35.0%
	ATTCACTAGGTACGTTTATC+TGG	+	chr8.3:23497577-23497596	MS.gene90485:intron	35.0%
	ATTGCACAAATGTGGAAGAT+GGG	+	chr8.3:23497459-23497478	MS.gene90485:CDS	35.0%
	CAACATTGAAGCATATGGAA+GGG	+	chr8.3:23498247-23498266	MS.gene90485:CDS	35.0%
	CCAAACAACATTGAAGCATA+TGG	+	chr8.3:23498242-23498261	MS.gene90485:CDS	35.0%
	CCATATGCTTCAATGTTGTT+TGG	-	chr8.3:23498245-23498264	None:intergenic	35.0%
	CCTATGAAGAAAAGTAGAAG+AGG	+	chr8.3:23496672-23496691	MS.gene90485:CDS	35.0%
	GACAACGAGCTTAATAATTC+TGG	+	chr8.3:23497793-23497812	MS.gene90485:CDS	35.0%
	TATTGTGAACTTCTTGACCT+TGG	-	chr8.3:23496699-23496718	None:intergenic	35.0%
	TGTGGAAAACAAGTGTATCT+TGG	+	chr8.3:23496882-23496901	MS.gene90485:CDS	35.0%
	TTCACTAGGTACGTTTATCT+GGG	+	chr8.3:23497578-23497597	MS.gene90485:intron	35.0%
	TTGTGTCTCTCATAATTGCA+GGG	+	chr8.3:23496857-23496876	MS.gene90485:intron	35.0%
	TTTGTGTCTCTCATAATTGC+AGG	+	chr8.3:23496856-23496875	MS.gene90485:intron	35.0%
!	CTATATTTAGAGCTTCCTCT+TGG	-	chr8.3:23497430-23497449	None:intergenic	35.0%
!	GCAAGAATGGGACAATTTTT+AGG	+	chr8.3:23497484-23497503	MS.gene90485:CDS	35.0%
!	TAATGGTGGTGATCACAATT+TGG	+	chr8.3:23497940-23497959	MS.gene90485:CDS	35.0%
!	TTTTGTGGCTGGATATGATT+TGG	+	chr8.3:23496981-23497000	MS.gene90485:intron	35.0%
!!	AGAGGAAGCTCTAAATATAG+AGG	+	chr8.3:23497430-23497449	MS.gene90485:CDS	35.0%
!!	CCTCTTCTACTTTTCTTCAT+AGG	-	chr8.3:23496675-23496694	None:intergenic	35.0%
!!!	TTTTTTGCTTCTTTTGTGGC+TGG	+	chr8.3:23496970-23496989	MS.gene90485:intron	35.0%
	AGAAAAGTAGAAGAGGACCA+AGG	+	chr8.3:23496679-23496698	MS.gene90485:CDS	40.0%
	AGCTCGTTGTCATATATGCT+TGG	-	chr8.3:23497784-23497803	None:intergenic	40.0%
	CATTGCACAAATGTGGAAGA+TGG	+	chr8.3:23497458-23497477	MS.gene90485:CDS	40.0%
	GATCAATCTAATTGGCAGCA+TGG	+	chr8.3:23498025-23498044	MS.gene90485:CDS	40.0%
	GCTTGGATCAAAATTGGTGA+CGG	-	chr8.3:23497767-23497786	None:intergenic	40.0%
	GGATCAAGAGTCTGATGATA+TGG	+	chr8.3:23496503-23496522	MS.gene90485:CDS	40.0%
	GTCGATGGGAATCACATATA+TGG	+	chr8.3:23496748-23496767	MS.gene90485:CDS	40.0%
	GTTATAGCATCTTCATGTGG+TGG	+	chr8.3:23496525-23496544	MS.gene90485:CDS	40.0%
	TCAATCTAATTGGCAGCATG+GGG	+	chr8.3:23498027-23498046	MS.gene90485:CDS	40.0%
	TCTCATAATTGCAGGGATTG+TGG	+	chr8.3:23496864-23496883	MS.gene90485:intron	40.0%
	TGTCAATCAGAAACACTTGG+AGG	+	chr8.3:23496609-23496628	MS.gene90485:CDS	40.0%
	TTACAGAAGAACAGGTCGAT+GGG	+	chr8.3:23496734-23496753	MS.gene90485:CDS	40.0%
	TTTACAGAAGAACAGGTCGA+TGG	+	chr8.3:23496733-23496752	MS.gene90485:CDS	40.0%
!	GGTGTTACATTGCACAAATG+TGG	+	chr8.3:23497451-23497470	MS.gene90485:CDS	40.0%
!	TAGTTTTCCTCGTGCTCATT+GGG	+	chr8.3:23496572-23496591	MS.gene90485:CDS	40.0%
	CAATCAGAAACACTTGGAGG+TGG	+	chr8.3:23496612-23496631	MS.gene90485:CDS	45.0%
	CAATCTAATTGGCAGCATGG+GGG	+	chr8.3:23498028-23498047	MS.gene90485:CDS	45.0%
	TGATCACCACCATTACTTGC+TGG	-	chr8.3:23497935-23497954	None:intergenic	45.0%
!	GCATCTTCATGTGGTGGAAA+TGG	+	chr8.3:23496531-23496550	MS.gene90485:CDS	45.0%
!!	ATGGAGAGAGTGAAGCATTG+AGG	+	chr8.3:23498276-23498295	MS.gene90485:CDS	45.0%
!!	CTAGTTTTCCTCGTGCTCAT+TGG	+	chr8.3:23496571-23496590	MS.gene90485:CDS	45.0%
!!!	CAAAGCACTGGTTTTCCAAG+AGG	+	chr8.3:23497412-23497431	MS.gene90485:CDS	45.0%
	ACACTGAGGTTGAAGCTGCA+AGG	+	chr8.3:23497609-23497628	MS.gene90485:CDS	50.0%
	GCACAAATGTGGAAGATGGG+AGG	+	chr8.3:23497462-23497481	MS.gene90485:CDS	50.0%
	GCAGAACCAGCAAGTAATGG+TGG	+	chr8.3:23497926-23497945	MS.gene90485:intron	50.0%
	GCAGCAGAACCAGCAAGTAA+TGG	+	chr8.3:23497923-23497942	MS.gene90485:intron	50.0%
	GCATATGGAAGGGACTTGCA+TGG	+	chr8.3:23498257-23498276	MS.gene90485:CDS	50.0%
	GGAAGATGGGAGGCAAGAAT+GGG	+	chr8.3:23497472-23497491	MS.gene90485:CDS	50.0%
	GTACTTCGTCGACAAAGCAC+TGG	+	chr8.3:23497400-23497419	MS.gene90485:CDS	50.0%
	TGGAAGATGGGAGGCAAGAA+TGG	+	chr8.3:23497471-23497490	MS.gene90485:CDS	50.0%
	TTTCCTCGTGCTCATTGGGT+AGG	+	chr8.3:23496576-23496595	MS.gene90485:CDS	50.0%
!	TCTGGGCTTGTTTGACACTG+AGG	+	chr8.3:23497595-23497614	MS.gene90485:CDS	50.0%
	ACACAGCACATGCAGCTGCT+CGG	+	chr8.3:23497078-23497097	MS.gene90485:CDS	55.0%
	ACACCTACCCAATGAGCACG+AGG	-	chr8.3:23496582-23496601	None:intergenic	55.0%
	GCATGGGGGAAACAAGCCTA+AGG	+	chr8.3:23498042-23498061	MS.gene90485:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	23496501	23498418	23496501	ID=MS.gene90485
chr8.3	mRNA	23496501	23498418	23496501	ID=MS.gene90485.t1;Parent=MS.gene90485
chr8.3	exon	23496501	23496769	23496501	ID=MS.gene90485.t1.exon1;Parent=MS.gene90485.t1
chr8.3	CDS	23496501	23496769	23496501	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23496878	23496903	23496878	ID=MS.gene90485.t1.exon2;Parent=MS.gene90485.t1
chr8.3	CDS	23496878	23496903	23496878	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23497069	23497099	23497069	ID=MS.gene90485.t1.exon3;Parent=MS.gene90485.t1
chr8.3	CDS	23497069	23497099	23497069	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23497187	23497274	23497187	ID=MS.gene90485.t1.exon4;Parent=MS.gene90485.t1
chr8.3	CDS	23497187	23497274	23497187	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23497367	23497512	23497367	ID=MS.gene90485.t1.exon5;Parent=MS.gene90485.t1
chr8.3	CDS	23497367	23497512	23497367	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23497586	23497630	23497586	ID=MS.gene90485.t1.exon6;Parent=MS.gene90485.t1
chr8.3	CDS	23497586	23497630	23497586	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23497723	23497814	23497723	ID=MS.gene90485.t1.exon7;Parent=MS.gene90485.t1
chr8.3	CDS	23497723	23497814	23497723	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23497930	23498063	23497930	ID=MS.gene90485.t1.exon8;Parent=MS.gene90485.t1
chr8.3	CDS	23497930	23498063	23497930	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1
chr8.3	exon	23498209	23498418	23498209	ID=MS.gene90485.t1.exon9;Parent=MS.gene90485.t1
chr8.3	CDS	23498209	23498418	23498209	ID=cds.MS.gene90485.t1;Parent=MS.gene90485.t1

Gene Sequence

>MS.gene90485

ATGGATCAAGAGTCTGATGATATGGTTATAGCATCTTCATGTGGTGGAAATGGAACATCTTCATCTTCTTCTAGTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCAGAAACACTTGGAGGTGGAAAATCAGTAGAACTTTCTTCTTCATCTTCTTCACAACCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCACATATATGGTTAGTTCTTAGTTTTTTTTACTTTTTTTTTCCTTACCTTAAAAATGTAAACCTTAAAAAAAATTGATTCTTTTTTTGGTTCTTTTTTTGTGTCTCTCATAATTGCAGGGATTGTGGAAAACAAGTGTATCTTGGTAAGTATCATATCATCATATCATAAAAATAATTTAGAATAATTGTTGTATTATTTTGGTTAAATTTTTTTTGCTTCTTTTGTGGCTGGATATGATTTGGTAGAGACAAGAGTTAAGATTTTTTGGTGACTGAATAGATTGTTTTGTCTGGATAAATTTGTATAGGTGGATTTGACACAGCACATGCAGCTGCTCGGTGAGTGAAATAATAATAATATATACATAATTTTATTTAATTTCAGTTATGGGGAATGTGAGATTTAAATTCATATACTTTGTGTAGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGAAGCTGACATAAACTTTAACATTGAAGATTATGAAGAAGATTTAAAGCAGGTGATGATGATCAAATATTGATCTTATCTTAAAATTTTGAATTTTCTTTGTTGAAATTGAATTAATTTTTTTGGTTGAATGCATTTTAATAGATGACTAATTTGACAAAAGAAGAGTTTGTACATGTACTTCGTCGACAAAGCACTGGTTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCACAAATGTGGAAGATGGGAGGCAAGAATGGGACAATTTTTAGGAAAAAAGTATGTCATATTTTTTTATCATCAATTTTTTTTTTTATGATATGATTAATTAATTATGATTTTCATTCACTAGGTACGTTTATCTGGGCTTGTTTGACACTGAGGTTGAAGCTGCAAGGTACTACCTTTGCTTACGTTGTCTATTTTGTTATAACATGATTAATTTTAGGTTTATTTTTTTAATAAAATAGATGTCATTTTTTACTATAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGTAAAGAGGCCGTCACCAATTTTGATCCAAGCATATATGACAACGAGCTTAATAATTCTGGTATATTTTGTTATGGACTCATGAAATTATAGTATATGATTAATTAATTAATTTTTTTTCTAATACTAGAAGTTTGATTAGTTTTATTATTACTCACATTATGTATATGCAGCAGAACCAGCAAGTAATGGTGGTGATCACAATTTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGCCTATCAATAACACTCAAGCAAATCATGCATCTGATCAATCTAATTGGCAGCATGGGGGAAACAAGCCTAAGGTGTAATAATAATTTTTTTTTTTTGACAAAAGGTGTAATAATATTATTTAAAAGAATTAAGTATTTATTTATTTACTCATCTGTTTACATTTGTTCAATTTCCTAATATTTAAACATTTTTTGTCTTTGTTGATATTTTATTCAGCTTGTGAATATACTCCCCAAACCATATAATAGACCAAACAACATTGAAGCATATGGAAGGGACTTGCATGGAGAGAGTGAAGCATTGAGGATGCTAAGTCAAACTCACCTTCATTCTTCATCATCAAATGAAATGCATAGATATGCTCCTTTTAGAGATCAGTCACAAATGCTTCAAAGTTTTGCACATACTCACCCACCAAATTTTCAT

Protein sequence

>MS.gene90485.t1

MDQESDDMVIASSCGGNGTSSSSSSFPRAHWVGVKFCQSETLGGGKSVELSSSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNNSEPASNGGDHNLDLSLGNSSSKPINNTQANHASDQSNWQHGGNKPKLVNILPKPYNRPNNIEAYGRDLHGESEALRMLSQTHLHSSSSNEMHRYAPFRDQSQMLQSFAHTHPPNFH