Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90617.t1 | PNX78236.1 | 63.3 | 523 | 137 | 4 | 1 | 476 | 92 | 606 | 2.10E-188 | 668.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90617.t1 | A0A2K3LI91 | 63.3 | 523 | 137 | 4 | 1 | 476 | 92 | 606 | 1.5e-188 | 668.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051710 | MS.gene90617 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene90617 | 0.804986 | 1.66E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene90617 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene054801 | MS.gene90617 | 0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene90617 | 0.803325 | 3.68E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene90617 | 0.807528 | 4.84E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90617.t1 | MTR_7g078980 | 38.411 | 151 | 34 | 3 | 31 | 181 | 20 | 111 | 1.06e-19 | 84.7 |
| MS.gene90617.t1 | MTR_7g078930 | 74.545 | 55 | 14 | 0 | 127 | 181 | 75 | 129 | 2.58e-19 | 84.3 |
| MS.gene90617.t1 | MTR_1g055005 | 43.299 | 97 | 51 | 2 | 352 | 446 | 47 | 141 | 5.11e-14 | 71.2 |
| MS.gene90617.t1 | MTR_3g028350 | 38.636 | 88 | 29 | 2 | 212 | 299 | 43 | 105 | 4.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90617.t1 | AT5G33406 | 43.132 | 364 | 156 | 4 | 145 | 458 | 1 | 363 | 5.82e-97 | 303 |
| MS.gene90617.t1 | AT4G15020 | 34.615 | 442 | 237 | 7 | 13 | 405 | 266 | 704 | 2.65e-74 | 250 |
| MS.gene90617.t1 | AT4G15020 | 34.615 | 442 | 237 | 7 | 13 | 405 | 266 | 704 | 2.65e-74 | 250 |
| MS.gene90617.t1 | AT3G22220 | 34.773 | 440 | 232 | 7 | 13 | 402 | 262 | 696 | 7.04e-74 | 248 |
| MS.gene90617.t1 | AT3G22220 | 34.773 | 440 | 232 | 7 | 13 | 402 | 262 | 696 | 7.04e-74 | 248 |
| MS.gene90617.t1 | AT3G22220 | 34.773 | 440 | 232 | 7 | 13 | 402 | 262 | 696 | 7.04e-74 | 248 |
| MS.gene90617.t1 | AT3G22220 | 34.773 | 440 | 232 | 7 | 13 | 402 | 262 | 696 | 7.04e-74 | 248 |
| MS.gene90617.t1 | AT1G79740 | 31.072 | 457 | 253 | 9 | 10 | 417 | 41 | 484 | 8.51e-71 | 234 |
| MS.gene90617.t1 | AT1G79740 | 31.072 | 457 | 253 | 9 | 10 | 417 | 41 | 484 | 8.51e-71 | 234 |
| MS.gene90617.t1 | AT1G79740 | 31.072 | 457 | 253 | 9 | 10 | 417 | 174 | 617 | 2.07e-69 | 234 |
| MS.gene90617.t1 | AT1G79740 | 31.072 | 457 | 253 | 9 | 10 | 417 | 174 | 617 | 2.07e-69 | 234 |
| MS.gene90617.t1 | AT3G17450 | 30.303 | 429 | 248 | 5 | 2 | 380 | 363 | 790 | 1.09e-68 | 236 |
| MS.gene90617.t1 | AT3G17450 | 30.303 | 429 | 248 | 5 | 2 | 380 | 363 | 790 | 1.09e-68 | 236 |
| MS.gene90617.t1 | AT3G13030 | 30.383 | 418 | 231 | 8 | 13 | 378 | 120 | 529 | 6.07e-52 | 185 |
| MS.gene90617.t1 | AT3G13030 | 30.383 | 418 | 231 | 8 | 13 | 378 | 120 | 529 | 6.07e-52 | 185 |
| MS.gene90617.t1 | AT3G13030 | 30.383 | 418 | 231 | 8 | 13 | 378 | 120 | 529 | 6.07e-52 | 185 |
| MS.gene90617.t1 | AT3G13030 | 30.383 | 418 | 231 | 8 | 13 | 378 | 120 | 529 | 6.07e-52 | 185 |
| MS.gene90617.t1 | AT3G13020 | 30.048 | 416 | 234 | 8 | 13 | 378 | 193 | 601 | 8.47e-49 | 177 |
| MS.gene90617.t1 | AT3G13030 | 28.365 | 416 | 209 | 8 | 13 | 378 | 120 | 496 | 7.12e-43 | 159 |
| MS.gene90617.t1 | AT1G43260 | 37.349 | 166 | 102 | 2 | 9 | 173 | 104 | 268 | 5.77e-33 | 127 |
| MS.gene90617.t1 | AT1G36095 | 41.358 | 162 | 95 | 0 | 53 | 214 | 137 | 298 | 1.27e-32 | 127 |
| MS.gene90617.t1 | AT3G13010 | 25.060 | 415 | 249 | 11 | 13 | 379 | 169 | 569 | 1.92e-29 | 122 |
| MS.gene90617.t1 | AT5G31412 | 44.545 | 110 | 61 | 0 | 15 | 124 | 135 | 244 | 1.06e-25 | 109 |
Find 100 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTTACTTCTCTTCT+TGG | 0.123186 | 5.4:-66983050 | None:intergenic |
| ATGCAAACCTCTCAGCAATT+TGG | 0.171724 | 5.4:-66982588 | None:intergenic |
| TATCATACTGAATGGTTAAT+AGG | 0.174846 | 5.4:+66983178 | MS.gene90617:CDS |
| GTGCACTTCTGCCATCATTT+TGG | 0.194903 | 5.4:+66982285 | MS.gene90617:CDS |
| TCCTCTTCACCATAATAATT+TGG | 0.200278 | 5.4:-66983466 | None:intergenic |
| TGAACACAAGGGCTAGTATT+AGG | 0.241356 | 5.4:+66983314 | MS.gene90617:CDS |
| GGTTTACTATAAAAGTATTT+AGG | 0.246423 | 5.4:-66982548 | None:intergenic |
| TTGGGATCTTTCTCAATATC+TGG | 0.254367 | 5.4:-66982569 | None:intergenic |
| TAAGATTCCTAGGATTAAAA+AGG | 0.284991 | 5.4:+66982019 | MS.gene90617:CDS |
| GAGGATGATCCAAATTATTA+TGG | 0.286471 | 5.4:+66983457 | MS.gene90617:CDS |
| ATCATACTGAATGGTTAATA+GGG | 0.308436 | 5.4:+66983179 | MS.gene90617:CDS |
| AGAACAAACCTCACATCTTT+TGG | 0.312210 | 5.4:+66981949 | MS.gene90617:CDS |
| AGTTTGGTTTGTAGTGCTTC+AGG | 0.326354 | 5.4:+66982895 | MS.gene90617:CDS |
| CTTCAGGATGTGAGCGCAAC+TGG | 0.351319 | 5.4:+66982911 | MS.gene90617:CDS |
| TGCAAACCTCTCAGCAATTT+GGG | 0.359854 | 5.4:-66982587 | None:intergenic |
| GAAGATGTTGGAGCCTCATT+TGG | 0.363366 | 5.4:+66981665 | None:intergenic |
| GCTGAGTGGTGGATGAATTA+TGG | 0.375891 | 5.4:+66982829 | MS.gene90617:intron |
| TCATGAACAAATTCTTCAAC+AGG | 0.376778 | 5.4:-66983232 | None:intergenic |
| CAAAAGGGGTGTTCTCTTGT+AGG | 0.377000 | 5.4:+66982047 | MS.gene90617:CDS |
| GAACACAAGGGCTAGTATTA+GGG | 0.381186 | 5.4:+66983315 | MS.gene90617:CDS |
| AAGAAGATGATGATGATAAT+TGG | 0.385196 | 5.4:+66983431 | MS.gene90617:CDS |
| AACCAAACTCAGCACTTTGA+TGG | 0.386442 | 5.4:-66982881 | None:intergenic |
| GGCCATCAAAGTGCTGAGTT+TGG | 0.386630 | 5.4:+66982879 | MS.gene90617:CDS |
| GTATTTGTTGAAGATGTTGT+AGG | 0.393067 | 5.4:+66983400 | MS.gene90617:CDS |
| GACCTCATGTTGGAAGATAT+TGG | 0.394320 | 5.4:+66981996 | MS.gene90617:CDS |
| GTTGAGTTCCAAGTGCAATA+AGG | 0.408152 | 5.4:+66982235 | MS.gene90617:CDS |
| CTAGCCCTTGTGTTCACTAT+AGG | 0.411361 | 5.4:-66983307 | None:intergenic |
| CATATCGGTCTTTCAAAGCT+TGG | 0.413634 | 5.4:-66983111 | None:intergenic |
| TTTAACCAACTCAACATTGT+TGG | 0.417354 | 5.4:-66982117 | None:intergenic |
| AAGATATTGGTAAGATTCCT+AGG | 0.417549 | 5.4:+66982009 | MS.gene90617:CDS |
| GCATATATTTCACCCATTGC+AGG | 0.418557 | 5.4:-66982383 | None:intergenic |
| CTCATTAACCCCACTTGCAT+TGG | 0.431159 | 5.4:-66983284 | None:intergenic |
| TCAAAATCATTGATAAAAGA+TGG | 0.443562 | 5.4:+66982477 | MS.gene90617:CDS |
| TTGGCTGCAAGGGTAAACTA+TGG | 0.444202 | 5.4:+66981684 | MS.gene90617:CDS |
| ATGAAAATGATGATCTAACT+TGG | 0.444991 | 5.4:+66983251 | MS.gene90617:CDS |
| ATGGAAGAGATGGGAGAGGA+TGG | 0.449395 | 5.4:+66983205 | MS.gene90617:CDS |
| TATAAAAGTATTTAGGATTG+AGG | 0.457902 | 5.4:-66982541 | None:intergenic |
| AATAGGGGAGATGGAAGAGA+TGG | 0.479021 | 5.4:+66983195 | MS.gene90617:CDS |
| CATCATCCATTGCATGCTGC+TGG | 0.483368 | 5.4:+66982512 | MS.gene90617:CDS |
| ATAGGGGAGATGGAAGAGAT+GGG | 0.484853 | 5.4:+66983196 | MS.gene90617:CDS |
| AACTCCGGATTTGACACTAA+TGG | 0.490085 | 5.4:+66982858 | MS.gene90617:CDS |
| AGAGTCAAAGACTGGAGAAA+TGG | 0.491539 | 5.4:+66981818 | MS.gene90617:CDS |
| TTTAGCTTCCTTATTGCACT+TGG | 0.494175 | 5.4:-66982243 | None:intergenic |
| TAAGGAAGCTAAAGGTAGGC+AGG | 0.502654 | 5.4:+66982253 | MS.gene90617:CDS |
| TCTTGTTGACGTGCTAAGAA+TGG | 0.508954 | 5.4:+66982343 | MS.gene90617:CDS |
| ATGGCCATTAGTGTCAAATC+CGG | 0.512170 | 5.4:-66982862 | None:intergenic |
| TTGTTCCTTCGCATTATCCA+TGG | 0.512640 | 5.4:-66982408 | None:intergenic |
| TTAAAATCATACAACATCAC+GGG | 0.516976 | 5.4:-66983154 | None:intergenic |
| TTTACCCTTGCAGCCAAATG+AGG | 0.517669 | 5.4:-66981678 | None:intergenic |
| TGAATGGTTAATAGGGGAGA+TGG | 0.520122 | 5.4:+66983186 | MS.gene90617:CDS |
| GCTTCTGAAGAGTCAAAGAC+TGG | 0.521479 | 5.4:+66981810 | MS.gene90617:CDS |
| GAAAACCAACAATGTTGAGT+TGG | 0.522947 | 5.4:+66982112 | MS.gene90617:CDS |
| GCATCAGAAGTTGCAAGAGT+TGG | 0.523127 | 5.4:+66983072 | MS.gene90617:CDS |
| CCACATTTCTTACTTTGCAA+AGG | 0.529530 | 5.4:+66982162 | MS.gene90617:CDS |
| CATTTGCTTTGAGCCTAATG+AGG | 0.529987 | 5.4:+66982087 | MS.gene90617:CDS |
| GGAAGCAACTATGTTTATGC+TGG | 0.533778 | 5.4:+66981912 | MS.gene90617:CDS |
| TGGAGCCTCATTTGGCTGCA+AGG | 0.534454 | 5.4:+66981673 | MS.gene90617:CDS |
| AGTACATCATTCCAAAATGA+TGG | 0.537042 | 5.4:-66982296 | None:intergenic |
| CAAAATCATTGATAAAAGAT+GGG | 0.542128 | 5.4:+66982478 | MS.gene90617:CDS |
| GGAGATGGAAGAGATGGGAG+AGG | 0.542686 | 5.4:+66983201 | MS.gene90617:CDS |
| ATTAAAATCATACAACATCA+CGG | 0.545758 | 5.4:-66983155 | None:intergenic |
| TCTTGTCAAGACAATCATAT+CGG | 0.545836 | 5.4:-66983126 | None:intergenic |
| AAGTGCAATAAGGAAGCTAA+AGG | 0.551734 | 5.4:+66982245 | MS.gene90617:CDS |
| GGAGCCTCATTTGGCTGCAA+GGG | 0.552479 | 5.4:+66981674 | MS.gene90617:CDS |
| GCAATAAGGAAGCTAAAGGT+AGG | 0.563127 | 5.4:+66982249 | MS.gene90617:CDS |
| CACGTCAACAAGAGGTGCCA+TGG | 0.566526 | 5.4:-66982333 | None:intergenic |
| GGGTGAAATATATGCAGCCA+TGG | 0.574934 | 5.4:+66982391 | MS.gene90617:CDS |
| TGAAAATGATGATCTAACTT+GGG | 0.580403 | 5.4:+66983252 | MS.gene90617:CDS |
| CATGCAATGGATGATGAAGT+TGG | 0.582948 | 5.4:-66982505 | None:intergenic |
| GCTCGATTATGTCCGATGGT+TGG | 0.585062 | 5.4:+66981709 | MS.gene90617:CDS |
| AATGTTGAGTTGGTTAAACA+TGG | 0.586870 | 5.4:+66982122 | MS.gene90617:CDS |
| GAATTATGGAGCAGAAACTC+CGG | 0.589304 | 5.4:+66982843 | MS.gene90617:CDS |
| TAGTAACCAGCAGCATGCAA+TGG | 0.590399 | 5.4:-66982518 | None:intergenic |
| TCCAAATTATTATGGTGAAG+AGG | 0.591275 | 5.4:+66983465 | MS.gene90617:CDS |
| AGATGATGATGATAATTGGT+TGG | 0.592842 | 5.4:+66983435 | MS.gene90617:CDS |
| TCTATGCAGTGTGCAGCACA+TGG | 0.592868 | 5.4:-66981975 | None:intergenic |
| ATCAAGTTGCCAATGCAAGT+GGG | 0.598161 | 5.4:+66983275 | MS.gene90617:CDS |
| GATCAAGTTGCCAATGCAAG+TGG | 0.601135 | 5.4:+66983274 | MS.gene90617:CDS |
| GATGGTTGGACAGACCGAAA+AGG | 0.605006 | 5.4:+66981723 | MS.gene90617:CDS |
| TGGTTAAACATGGAGTCACA+AGG | 0.606856 | 5.4:+66982132 | MS.gene90617:CDS |
| ATGAGCCTATAGTGAACACA+AGG | 0.607069 | 5.4:+66983302 | MS.gene90617:CDS |
| TGATGATGATAATTGGTTGG+AGG | 0.612525 | 5.4:+66983438 | MS.gene90617:CDS |
| ATTCTTAGCACGTCAACAAG+AGG | 0.615152 | 5.4:-66982341 | None:intergenic |
| ACTCCACACTCTTAAGTCCA+TGG | 0.620572 | 5.4:+66982316 | MS.gene90617:CDS |
| TATTAGGGCAGAACGAGCAA+AGG | 0.625543 | 5.4:+66983330 | MS.gene90617:CDS |
| TACCAATATCTTCCAACATG+AGG | 0.628099 | 5.4:-66981998 | None:intergenic |
| TGCAGCCATGGATAATGCGA+AGG | 0.634019 | 5.4:+66982403 | MS.gene90617:CDS |
| TCATACTGAATGGTTAATAG+GGG | 0.636511 | 5.4:+66983180 | MS.gene90617:CDS |
| TCAAGTTGCCAATGCAAGTG+GGG | 0.642208 | 5.4:+66983276 | MS.gene90617:CDS |
| GGATGCTCGATTATGTCCGA+TGG | 0.644130 | 5.4:+66981705 | MS.gene90617:CDS |
| TTAGGCTCAAAGCAAATGTG+TGG | 0.655077 | 5.4:-66982082 | None:intergenic |
| GTGCAATTGATTACTGACAA+TGG | 0.657518 | 5.4:+66981891 | MS.gene90617:CDS |
| GTGCCATGGACTTAAGAGTG+TGG | 0.673069 | 5.4:-66982319 | None:intergenic |
| CATGGAGTCCAAAAGATGTG+AGG | 0.680155 | 5.4:-66981957 | None:intergenic |
| CCTTTGCAAAGTAAGAAATG+TGG | 0.689473 | 5.4:-66982162 | None:intergenic |
| AAAGATCCCAAATTGCTGAG+AGG | 0.691344 | 5.4:+66982581 | MS.gene90617:CDS |
| TAAAATCATACAACATCACG+GGG | 0.706865 | 5.4:-66983153 | None:intergenic |
| ACACTGCATAGACCTCATGT+TGG | 0.712729 | 5.4:+66981986 | MS.gene90617:CDS |
| TGAGATGGGTGAGCAAAATG+TGG | 0.720487 | 5.4:+66981869 | MS.gene90617:CDS |
| TGAGCCTATAGTGAACACAA+GGG | 0.779784 | 5.4:+66983303 | MS.gene90617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAGGATATACAAAA+GGG | + | chr5.4:66982032-66982051 | MS.gene90617:CDS | 15.0% |
| !!! | AAAAATTTCAATTTTAATGC+AGG | + | chr5.4:66982437-66982456 | MS.gene90617:CDS | 15.0% |
| !!! | ATTTTAATTATCATACTGAA+TGG | + | chr5.4:66983170-66983189 | MS.gene90617:CDS | 15.0% |
| !! | ATTAAAATCATACAACATCA+CGG | - | chr5.4:66983158-66983177 | None:intergenic | 20.0% |
| !! | ATTCACCAAAAAATTAATCA+AGG | - | chr5.4:66981754-66981773 | None:intergenic | 20.0% |
| !! | CAAAATCATTGATAAAAGAT+GGG | + | chr5.4:66982478-66982497 | MS.gene90617:CDS | 20.0% |
| !! | GATTAAAAAGGATATACAAA+AGG | + | chr5.4:66982031-66982050 | MS.gene90617:CDS | 20.0% |
| !! | TCAAAATCATTGATAAAAGA+TGG | + | chr5.4:66982477-66982496 | MS.gene90617:CDS | 20.0% |
| !! | TTAAAAAGGATATACAAAAG+GGG | + | chr5.4:66982033-66982052 | MS.gene90617:CDS | 20.0% |
| !!! | GGTTTACTATAAAAGTATTT+AGG | - | chr5.4:66982551-66982570 | None:intergenic | 20.0% |
| !!! | TAGAACCTTGATTAATTTTT+TGG | + | chr5.4:66981746-66981765 | MS.gene90617:CDS | 20.0% |
| !!! | TATAAAAGTATTTAGGATTG+AGG | - | chr5.4:66982544-66982563 | None:intergenic | 20.0% |
| ! | ATCATACTGAATGGTTAATA+GGG | + | chr5.4:66983179-66983198 | MS.gene90617:CDS | 25.0% |
| ! | ATGAAAATGATGATCTAACT+TGG | + | chr5.4:66983251-66983270 | MS.gene90617:CDS | 25.0% |
| ! | TAAGATTCCTAGGATTAAAA+AGG | + | chr5.4:66982019-66982038 | MS.gene90617:CDS | 25.0% |
| ! | TATCATACTGAATGGTTAAT+AGG | + | chr5.4:66983178-66983197 | MS.gene90617:CDS | 25.0% |
| ! | TGAAAATGATGATCTAACTT+GGG | + | chr5.4:66983252-66983271 | MS.gene90617:CDS | 25.0% |
| ! | TTAAAATCATACAACATCAC+GGG | - | chr5.4:66983157-66983176 | None:intergenic | 25.0% |
| !! | AAGAAGATGATGATGATAAT+TGG | + | chr5.4:66983431-66983450 | MS.gene90617:CDS | 25.0% |
| !! | TGTATATCCTTTTTAATCCT+AGG | - | chr5.4:66982029-66982048 | None:intergenic | 25.0% |
| !! | TTTAGAGTATCTTACAATCT+TGG | + | chr5.4:66982986-66983005 | MS.gene90617:intron | 25.0% |
| !!! | AGATGTTTTTATGTGAAGAA+TGG | + | chr5.4:66982213-66982232 | MS.gene90617:CDS | 25.0% |
| AAGATATTGGTAAGATTCCT+AGG | + | chr5.4:66982009-66982028 | MS.gene90617:CDS | 30.0% | |
| AATGAGAAAAAACCTGCAAT+GGG | + | chr5.4:66982371-66982390 | MS.gene90617:CDS | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | + | chr5.4:66982625-66982644 | MS.gene90617:intron | 30.0% | |
| AGTACATCATTCCAAAATGA+TGG | - | chr5.4:66982299-66982318 | None:intergenic | 30.0% | |
| GAGGATGATCCAAATTATTA+TGG | + | chr5.4:66983457-66983476 | MS.gene90617:CDS | 30.0% | |
| TAAAAACATCTCTCTAAGCT+TGG | - | chr5.4:66982204-66982223 | None:intergenic | 30.0% | |
| TAAAATCATACAACATCACG+GGG | - | chr5.4:66983156-66983175 | None:intergenic | 30.0% | |
| TAATGAGAAAAAACCTGCAA+TGG | + | chr5.4:66982370-66982389 | MS.gene90617:CDS | 30.0% | |
| TCATACTGAATGGTTAATAG+GGG | + | chr5.4:66983180-66983199 | MS.gene90617:CDS | 30.0% | |
| TCATGAACAAATTCTTCAAC+AGG | - | chr5.4:66983235-66983254 | None:intergenic | 30.0% | |
| TCCAAATTATTATGGTGAAG+AGG | + | chr5.4:66983465-66983484 | MS.gene90617:CDS | 30.0% | |
| TCCTCTTCACCATAATAATT+TGG | - | chr5.4:66983469-66983488 | None:intergenic | 30.0% | |
| TCTTGTCAAGACAATCATAT+CGG | - | chr5.4:66983129-66983148 | None:intergenic | 30.0% | |
| TTTAACCAACTCAACATTGT+TGG | - | chr5.4:66982120-66982139 | None:intergenic | 30.0% | |
| ! | AGATGATGATGATAATTGGT+TGG | + | chr5.4:66983435-66983454 | MS.gene90617:CDS | 30.0% |
| ! | GTATTTGTTGAAGATGTTGT+AGG | + | chr5.4:66983400-66983419 | MS.gene90617:CDS | 30.0% |
| ! | TAATCAAGGTTCTACCTTTT+CGG | - | chr5.4:66981740-66981759 | None:intergenic | 30.0% |
| !! | AATGTTGAGTTGGTTAAACA+TGG | + | chr5.4:66982122-66982141 | MS.gene90617:CDS | 30.0% |
| !! | AGTGATTTTGTTGATGAGAT+GGG | + | chr5.4:66981855-66981874 | MS.gene90617:CDS | 30.0% |
| AAGTGCAATAAGGAAGCTAA+AGG | + | chr5.4:66982245-66982264 | MS.gene90617:CDS | 35.0% | |
| ATGATGACTATTTGGAGGAA+AGG | + | chr5.4:66982688-66982707 | MS.gene90617:intron | 35.0% | |
| CCACATTTCTTACTTTGCAA+AGG | + | chr5.4:66982162-66982181 | MS.gene90617:CDS | 35.0% | |
| CCTTTGCAAAGTAAGAAATG+TGG | - | chr5.4:66982165-66982184 | None:intergenic | 35.0% | |
| CTCAAGTTTACTTCTCTTCT+TGG | - | chr5.4:66983053-66983072 | None:intergenic | 35.0% | |
| GAAAACCAACAATGTTGAGT+TGG | + | chr5.4:66982112-66982131 | MS.gene90617:CDS | 35.0% | |
| GAAATGAACTTCCATTTACC+TGG | - | chr5.4:66982743-66982762 | None:intergenic | 35.0% | |
| GTGCAATTGATTACTGACAA+TGG | + | chr5.4:66981891-66981910 | MS.gene90617:CDS | 35.0% | |
| TACCAATATCTTCCAACATG+AGG | - | chr5.4:66982001-66982020 | None:intergenic | 35.0% | |
| TTGGGATCTTTCTCAATATC+TGG | - | chr5.4:66982572-66982591 | None:intergenic | 35.0% | |
| ! | AGAACAAACCTCACATCTTT+TGG | + | chr5.4:66981949-66981968 | MS.gene90617:CDS | 35.0% |
| ! | TGATGATGATAATTGGTTGG+AGG | + | chr5.4:66983438-66983457 | MS.gene90617:CDS | 35.0% |
| ! | TTTAGCTTCCTTATTGCACT+TGG | - | chr5.4:66982246-66982265 | None:intergenic | 35.0% |
| !! | GAGTGATTTTGTTGATGAGA+TGG | + | chr5.4:66981854-66981873 | MS.gene90617:CDS | 35.0% |
| !! | TTTTTGGTGAATTCTACTGC+TGG | + | chr5.4:66981762-66981781 | MS.gene90617:CDS | 35.0% |
| !!! | TGTTGGTTTTCTTCCTCATT+AGG | - | chr5.4:66982103-66982122 | None:intergenic | 35.0% |
| AAAGATCCCAAATTGCTGAG+AGG | + | chr5.4:66982581-66982600 | MS.gene90617:CDS | 40.0% | |
| AACCAAACTCAGCACTTTGA+TGG | - | chr5.4:66982884-66982903 | None:intergenic | 40.0% | |
| AACTCCGGATTTGACACTAA+TGG | + | chr5.4:66982858-66982877 | MS.gene90617:CDS | 40.0% | |
| AGAGTCAAAGACTGGAGAAA+TGG | + | chr5.4:66981818-66981837 | MS.gene90617:CDS | 40.0% | |
| ATGAGCCTATAGTGAACACA+AGG | + | chr5.4:66983302-66983321 | MS.gene90617:CDS | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | - | chr5.4:66982591-66982610 | None:intergenic | 40.0% | |
| ATGGCCATTAGTGTCAAATC+CGG | - | chr5.4:66982865-66982884 | None:intergenic | 40.0% | |
| ATGTAATGAAGTGGCAGACT+TGG | + | chr5.4:66982634-66982653 | MS.gene90617:intron | 40.0% | |
| ATTCTTAGCACGTCAACAAG+AGG | - | chr5.4:66982344-66982363 | None:intergenic | 40.0% | |
| CAAAACTGTCTCCAGGTAAA+TGG | + | chr5.4:66982729-66982748 | MS.gene90617:intron | 40.0% | |
| CATATCGGTCTTTCAAAGCT+TGG | - | chr5.4:66983114-66983133 | None:intergenic | 40.0% | |
| CATGCAATGGATGATGAAGT+TGG | - | chr5.4:66982508-66982527 | None:intergenic | 40.0% | |
| GAATTATGGAGCAGAAACTC+CGG | + | chr5.4:66982843-66982862 | MS.gene90617:CDS | 40.0% | |
| GACCTCATGTTGGAAGATAT+TGG | + | chr5.4:66981996-66982015 | MS.gene90617:CDS | 40.0% | |
| GCAATAAGGAAGCTAAAGGT+AGG | + | chr5.4:66982249-66982268 | MS.gene90617:CDS | 40.0% | |
| GCATATATTTCACCCATTGC+AGG | - | chr5.4:66982386-66982405 | None:intergenic | 40.0% | |
| GGAAGCAACTATGTTTATGC+TGG | + | chr5.4:66981912-66981931 | MS.gene90617:CDS | 40.0% | |
| GTTGAGTTCCAAGTGCAATA+AGG | + | chr5.4:66982235-66982254 | MS.gene90617:CDS | 40.0% | |
| TCTTGTTGACGTGCTAAGAA+TGG | + | chr5.4:66982343-66982362 | MS.gene90617:CDS | 40.0% | |
| TGAATGGTTAATAGGGGAGA+TGG | + | chr5.4:66983186-66983205 | MS.gene90617:CDS | 40.0% | |
| TGAGCCTATAGTGAACACAA+GGG | + | chr5.4:66983303-66983322 | MS.gene90617:CDS | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | - | chr5.4:66982590-66982609 | None:intergenic | 40.0% | |
| TGGTTAAACATGGAGTCACA+AGG | + | chr5.4:66982132-66982151 | MS.gene90617:CDS | 40.0% | |
| TTAGGCTCAAAGCAAATGTG+TGG | - | chr5.4:66982085-66982104 | None:intergenic | 40.0% | |
| TTGTTCCTTCGCATTATCCA+TGG | - | chr5.4:66982411-66982430 | None:intergenic | 40.0% | |
| ! | AGACTTGGTTACAACTCAGT+TGG | + | chr5.4:66982649-66982668 | MS.gene90617:intron | 40.0% |
| ! | ATCAAGTTGCCAATGCAAGT+GGG | + | chr5.4:66983275-66983294 | MS.gene90617:CDS | 40.0% |
| ! | CATTTGCTTTGAGCCTAATG+AGG | + | chr5.4:66982087-66982106 | MS.gene90617:CDS | 40.0% |
| ! | GAACACAAGGGCTAGTATTA+GGG | + | chr5.4:66983315-66983334 | MS.gene90617:CDS | 40.0% |
| ! | GACTTGGTTACAACTCAGTT+GGG | + | chr5.4:66982650-66982669 | MS.gene90617:intron | 40.0% |
| ! | TGAACACAAGGGCTAGTATT+AGG | + | chr5.4:66983314-66983333 | MS.gene90617:CDS | 40.0% |
| !! | AGTTTGGTTTGTAGTGCTTC+AGG | + | chr5.4:66982895-66982914 | MS.gene90617:CDS | 40.0% |
| !! | TGTGTATTTTTGCAGCTGAG+TGG | + | chr5.4:66982815-66982834 | MS.gene90617:intron | 40.0% |
| AATAGGGGAGATGGAAGAGA+TGG | + | chr5.4:66983195-66983214 | MS.gene90617:CDS | 45.0% | |
| ACACTGCATAGACCTCATGT+TGG | + | chr5.4:66981986-66982005 | MS.gene90617:CDS | 45.0% | |
| ACTCCACACTCTTAAGTCCA+TGG | + | chr5.4:66982316-66982335 | MS.gene90617:CDS | 45.0% | |
| AGGCGTGCATGATGACTATT+TGG | + | chr5.4:66982680-66982699 | MS.gene90617:intron | 45.0% | |
| ATAGGGGAGATGGAAGAGAT+GGG | + | chr5.4:66983196-66983215 | MS.gene90617:CDS | 45.0% | |
| CAACTCAGTTGGGACAATAC+AGG | + | chr5.4:66982660-66982679 | MS.gene90617:intron | 45.0% | |
| CATGGAGTCCAAAAGATGTG+AGG | - | chr5.4:66981960-66981979 | None:intergenic | 45.0% | |
| CGTGCATGATGACTATTTGG+AGG | + | chr5.4:66982683-66982702 | MS.gene90617:intron | 45.0% | |
| CTAGCCCTTGTGTTCACTAT+AGG | - | chr5.4:66983310-66983329 | None:intergenic | 45.0% | |
| CTCATTAACCCCACTTGCAT+TGG | - | chr5.4:66983287-66983306 | None:intergenic | 45.0% | |
| GCATCAGAAGTTGCAAGAGT+TGG | + | chr5.4:66983072-66983091 | MS.gene90617:CDS | 45.0% | |
| GGGTGAAATATATGCAGCCA+TGG | + | chr5.4:66982391-66982410 | MS.gene90617:CDS | 45.0% | |
| TAAGGAAGCTAAAGGTAGGC+AGG | + | chr5.4:66982253-66982272 | MS.gene90617:CDS | 45.0% | |
| TAGTAACCAGCAGCATGCAA+TGG | - | chr5.4:66982521-66982540 | None:intergenic | 45.0% | |
| TATTAGGGCAGAACGAGCAA+AGG | + | chr5.4:66983330-66983349 | MS.gene90617:CDS | 45.0% | |
| TGAGATGGGTGAGCAAAATG+TGG | + | chr5.4:66981869-66981888 | MS.gene90617:CDS | 45.0% | |
| TTGGCTGCAAGGGTAAACTA+TGG | + | chr5.4:66981684-66981703 | MS.gene90617:CDS | 45.0% | |
| TTTACCCTTGCAGCCAAATG+AGG | - | chr5.4:66981681-66981700 | None:intergenic | 45.0% | |
| ! | GATCAAGTTGCCAATGCAAG+TGG | + | chr5.4:66983274-66983293 | MS.gene90617:CDS | 45.0% |
| ! | GCTTCTGAAGAGTCAAAGAC+TGG | + | chr5.4:66981810-66981829 | MS.gene90617:CDS | 45.0% |
| ! | GTGCACTTCTGCCATCATTT+TGG | + | chr5.4:66982285-66982304 | MS.gene90617:CDS | 45.0% |
| ! | TCAAGTTGCCAATGCAAGTG+GGG | + | chr5.4:66983276-66983295 | MS.gene90617:CDS | 45.0% |
| ! | TTTTCGGTCTGTCCAACCAT+CGG | - | chr5.4:66981724-66981743 | None:intergenic | 45.0% |
| !! | CAAAAGGGGTGTTCTCTTGT+AGG | + | chr5.4:66982047-66982066 | MS.gene90617:CDS | 45.0% |
| !! | GCTGAGTGGTGGATGAATTA+TGG | + | chr5.4:66982829-66982848 | MS.gene90617:intron | 45.0% |
| !! | GTATTTTTGCAGCTGAGTGG+TGG | + | chr5.4:66982818-66982837 | MS.gene90617:intron | 45.0% |
| ATGGAAGAGATGGGAGAGGA+TGG | + | chr5.4:66983205-66983224 | MS.gene90617:CDS | 50.0% | |
| CATCATCCATTGCATGCTGC+TGG | + | chr5.4:66982512-66982531 | MS.gene90617:CDS | 50.0% | |
| GATGGTTGGACAGACCGAAA+AGG | + | chr5.4:66981723-66981742 | MS.gene90617:CDS | 50.0% | |
| GCTCGATTATGTCCGATGGT+TGG | + | chr5.4:66981709-66981728 | MS.gene90617:CDS | 50.0% | |
| GGATGCTCGATTATGTCCGA+TGG | + | chr5.4:66981705-66981724 | MS.gene90617:CDS | 50.0% | |
| GTGCCATGGACTTAAGAGTG+TGG | - | chr5.4:66982322-66982341 | None:intergenic | 50.0% | |
| TCTATGCAGTGTGCAGCACA+TGG | - | chr5.4:66981978-66981997 | None:intergenic | 50.0% | |
| TGCAGCCATGGATAATGCGA+AGG | + | chr5.4:66982403-66982422 | MS.gene90617:CDS | 50.0% | |
| TTGGAGGAAAGGCAGCAGTA+AGG | + | chr5.4:66982699-66982718 | MS.gene90617:intron | 50.0% | |
| !! | GGCCATCAAAGTGCTGAGTT+TGG | + | chr5.4:66982879-66982898 | MS.gene90617:CDS | 50.0% |
| CTGCGGTCAAAACTGTCTCC+AGG | + | chr5.4:66982722-66982741 | MS.gene90617:intron | 55.0% | |
| CTTCAGGATGTGAGCGCAAC+TGG | + | chr5.4:66982911-66982930 | MS.gene90617:CDS | 55.0% | |
| GAAAGGCAGCAGTAAGGCTG+CGG | + | chr5.4:66982705-66982724 | MS.gene90617:intron | 55.0% | |
| GGAGATGGAAGAGATGGGAG+AGG | + | chr5.4:66983201-66983220 | MS.gene90617:CDS | 55.0% | |
| GGAGCCTCATTTGGCTGCAA+GGG | + | chr5.4:66981674-66981693 | MS.gene90617:CDS | 55.0% | |
| TGGAGCCTCATTTGGCTGCA+AGG | + | chr5.4:66981673-66981692 | MS.gene90617:CDS | 55.0% | |
| !! | CACGTCAACAAGAGGTGCCA+TGG | - | chr5.4:66982336-66982355 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66981669 | 66983513 | 66981669 | ID=MS.gene90617 |
| chr5.4 | mRNA | 66981669 | 66983513 | 66981669 | ID=MS.gene90617.t1;Parent=MS.gene90617 |
| chr5.4 | exon | 66981669 | 66982602 | 66981669 | ID=MS.gene90617.t1.exon1;Parent=MS.gene90617.t1 |
| chr5.4 | CDS | 66981669 | 66982602 | 66981669 | ID=cds.MS.gene90617.t1;Parent=MS.gene90617.t1 |
| chr5.4 | exon | 66982830 | 66982948 | 66982830 | ID=MS.gene90617.t1.exon2;Parent=MS.gene90617.t1 |
| chr5.4 | CDS | 66982830 | 66982948 | 66982830 | ID=cds.MS.gene90617.t1;Parent=MS.gene90617.t1 |
| chr5.4 | exon | 66983043 | 66983513 | 66983043 | ID=MS.gene90617.t1.exon3;Parent=MS.gene90617.t1 |
| chr5.4 | CDS | 66983043 | 66983513 | 66983043 | ID=cds.MS.gene90617.t1;Parent=MS.gene90617.t1 |
| Gene Sequence |
| Protein sequence |
