Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90635.t1 | XP_003600249.2 | 97.2 | 434 | 10 | 2 | 1 | 434 | 1 | 432 | 9.60E-222 | 779.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90635.t1 | G7J1I7 | 97.2 | 434 | 10 | 2 | 1 | 434 | 1 | 432 | 6.9e-222 | 779.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47603 | MS.gene90635 | PPI |
| MS.gene90635 | MS.gene038142 | PPI |
| MS.gene038202 | MS.gene90635 | PPI |
| MS.gene90635 | MS.gene70895 | PPI |
| MS.gene038143 | MS.gene90635 | PPI |
| MS.gene90635 | MS.gene016987 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90635.t1 | MTR_3g055960 | 97.926 | 434 | 7 | 2 | 1 | 434 | 1 | 432 | 0.0 | 863 |
| MS.gene90635.t1 | MTR_5g094340 | 73.041 | 434 | 98 | 8 | 3 | 434 | 1 | 417 | 0.0 | 612 |
| MS.gene90635.t1 | MTR_5g089720 | 37.470 | 419 | 210 | 9 | 55 | 434 | 32 | 437 | 4.11e-83 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90635.t1 | AT5G55530 | 56.881 | 436 | 153 | 9 | 3 | 434 | 1 | 405 | 1.51e-157 | 451 |
| MS.gene90635.t1 | AT5G55530 | 56.881 | 436 | 153 | 9 | 3 | 434 | 1 | 405 | 1.51e-157 | 451 |
| MS.gene90635.t1 | AT5G55530 | 56.881 | 436 | 153 | 9 | 3 | 434 | 1 | 405 | 1.51e-157 | 451 |
| MS.gene90635.t1 | AT1G50570 | 54.156 | 397 | 148 | 10 | 42 | 434 | 22 | 388 | 2.05e-125 | 369 |
| MS.gene90635.t1 | AT1G50570 | 54.156 | 397 | 148 | 10 | 42 | 434 | 22 | 388 | 2.05e-125 | 369 |
| MS.gene90635.t1 | AT5G12300 | 46.154 | 195 | 88 | 5 | 58 | 243 | 21 | 207 | 1.88e-53 | 183 |
| MS.gene90635.t1 | AT5G12300 | 44.872 | 78 | 28 | 2 | 372 | 434 | 297 | 374 | 4.74e-12 | 67.8 |
Find 103 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAACTTGTTCATGATTT+GGG | 0.195292 | 3.2:-48256315 | None:intergenic |
| CCTGAAACTTGTTCATGATT+TGG | 0.219185 | 3.2:-48256316 | None:intergenic |
| CAATCTTCGTCTCAATGTTT+TGG | 0.227735 | 3.2:+48255679 | MS.gene90635:CDS |
| CTTTCTCTAGTTTACCATTC+TGG | 0.234179 | 3.2:-48255811 | None:intergenic |
| CCAAATCATGAACAAGTTTC+AGG | 0.245310 | 3.2:+48256316 | MS.gene90635:CDS |
| TTAATGGTTTCGGAATATTT+TGG | 0.254413 | 3.2:+48256055 | MS.gene90635:CDS |
| GTCTCTACTAAGACCATTAA+TGG | 0.256641 | 3.2:+48255629 | MS.gene90635:CDS |
| GATCTGTTTCATTCTCCTTC+AGG | 0.261707 | 3.2:+48255854 | MS.gene90635:CDS |
| TGGTCTTCGTTTGCAATCTT+AGG | 0.278614 | 3.2:-48256031 | None:intergenic |
| TGCAAACGAAGACCACTTAA+TGG | 0.284606 | 3.2:+48256039 | MS.gene90635:CDS |
| ATTGACTTCAATGTCCTTAG+AGG | 0.297181 | 3.2:-48255456 | None:intergenic |
| GTTCCTTCCACCTCCATTAA+TGG | 0.307297 | 3.2:-48255642 | None:intergenic |
| TGAGTCATTGGCCAGAGATT+TGG | 0.310125 | 3.2:+48255988 | MS.gene90635:CDS |
| CAATTACTGTTGTATGATCA+TGG | 0.343347 | 3.2:+48255334 | None:intergenic |
| TGCTGAACCATCTGCGGCTC+TGG | 0.358153 | 3.2:-48256445 | None:intergenic |
| CGGTGCTACACCTGATGTTA+TGG | 0.365739 | 3.2:+48255904 | MS.gene90635:CDS |
| CGAAGACCACTTAATGGTTT+CGG | 0.367450 | 3.2:+48256045 | MS.gene90635:CDS |
| TCGTTTGCAATCTTAGGATC+TGG | 0.377435 | 3.2:-48256025 | None:intergenic |
| AAGCAACGGTCCTTCCTCTA+AGG | 0.393297 | 3.2:+48255442 | MS.gene90635:CDS |
| CCAAGCAGTGTGTCAACAAA+TGG | 0.396904 | 3.2:+48256229 | MS.gene90635:CDS |
| GAAAGTGAACCAACTACTTC+AGG | 0.397702 | 3.2:+48256547 | MS.gene90635:CDS |
| CTTGAATTTCCTGAAGTAGT+TGG | 0.407339 | 3.2:-48256556 | None:intergenic |
| CCCTTTAGAACCTCAGTCTT+GGG | 0.408315 | 3.2:+48255380 | MS.gene90635:CDS |
| TTAGTAGAGACACTGTTCTC+TGG | 0.427254 | 3.2:-48255617 | None:intergenic |
| TTCACAGTCACAACAGGCTT+AGG | 0.428362 | 3.2:-48256415 | None:intergenic |
| TCTAAGGACATTGAAGTCAA+TGG | 0.431544 | 3.2:+48255458 | MS.gene90635:CDS |
| GTGAGTTATGGATGCTTAGC+AGG | 0.442760 | 3.2:+48255723 | MS.gene90635:CDS |
| CTCGGAAACATGTGAGTCAT+TGG | 0.443554 | 3.2:+48255976 | MS.gene90635:CDS |
| TTGTTCATGATTTGGGGACT+TGG | 0.443994 | 3.2:-48256308 | None:intergenic |
| CATCTCTCAAATGTGAGTTA+TGG | 0.448295 | 3.2:+48255711 | MS.gene90635:CDS |
| TGTTCTCTGGATTACTTGTC+AGG | 0.449342 | 3.2:-48255604 | None:intergenic |
| CCCAAGACTGAGGTTCTAAA+GGG | 0.451045 | 3.2:-48255380 | None:intergenic |
| CAAGCAGTGTGTCAACAAAT+GGG | 0.452081 | 3.2:+48256230 | MS.gene90635:CDS |
| GCTCGATGTTTATATACATC+AGG | 0.456152 | 3.2:+48255523 | MS.gene90635:CDS |
| GACTCAGTGCTCTGATAGCT+TGG | 0.460570 | 3.2:+48256093 | MS.gene90635:CDS |
| TATCTTGAAGATCAGTTGCT+TGG | 0.461888 | 3.2:+48255755 | MS.gene90635:CDS |
| CTAAGGACATTGAAGTCAAT+GGG | 0.464490 | 3.2:+48255459 | MS.gene90635:CDS |
| ACCCTTTAGAACCTCAGTCT+TGG | 0.466024 | 3.2:+48255379 | MS.gene90635:CDS |
| TCAATATTCACAGTCACAAC+AGG | 0.469854 | 3.2:-48256421 | None:intergenic |
| ACCCAAGACTGAGGTTCTAA+AGG | 0.472225 | 3.2:-48255381 | None:intergenic |
| GGAAGCTGGTGTTCGTCTTG+TGG | 0.480983 | 3.2:+48256144 | MS.gene90635:CDS |
| TGATGCTGAAAATCATAGTT+CGG | 0.482073 | 3.2:+48256123 | MS.gene90635:CDS |
| ATCTGCTATGCCGGGGAAAG+TGG | 0.488327 | 3.2:+48255931 | MS.gene90635:CDS |
| TGTGCAAGTGGAACCTCCTA+AGG | 0.488557 | 3.2:+48256195 | MS.gene90635:CDS |
| TATGGCAATATCTGCTATGC+CGG | 0.490303 | 3.2:+48255922 | MS.gene90635:CDS |
| TAGAACCTCAGTCTTGGGTG+AGG | 0.492450 | 3.2:+48255385 | MS.gene90635:CDS |
| GGCTTAGGGAATAAATCATT+CGG | 0.497719 | 3.2:-48256400 | None:intergenic |
| CTTGGTGGAGACTCAACCTT+AGG | 0.499060 | 3.2:-48256211 | None:intergenic |
| GCAGATATTGCCATAACATC+AGG | 0.499230 | 3.2:-48255914 | None:intergenic |
| ATGGCAATATCTGCTATGCC+GGG | 0.503138 | 3.2:+48255923 | MS.gene90635:CDS |
| TCACAGTCACAACAGGCTTA+GGG | 0.508245 | 3.2:-48256414 | None:intergenic |
| CCATTTGTTGACACACTGCT+TGG | 0.508653 | 3.2:-48256229 | None:intergenic |
| AGAGCCGCAGATGGTTCAGC+AGG | 0.512099 | 3.2:+48256447 | MS.gene90635:CDS |
| AATATTCCGAAACCATTAAG+TGG | 0.512567 | 3.2:-48256051 | None:intergenic |
| GAAAATCATAGTTCGGAAGC+TGG | 0.519872 | 3.2:+48256130 | MS.gene90635:CDS |
| AGCGAAAATGAAGCTTCCTA+TGG | 0.519913 | 3.2:+48256519 | MS.gene90635:CDS |
| GGGTTAGCGTTCTTAGTTTG+CGG | 0.519999 | 3.2:-48256595 | None:intergenic |
| AGGGTGATACAACAGATTGT+GGG | 0.523722 | 3.2:-48255361 | None:intergenic |
| AAGGGTGATACAACAGATTG+TGG | 0.527553 | 3.2:-48255362 | None:intergenic |
| ACTAAGACCATTAATGGAGG+TGG | 0.529485 | 3.2:+48255635 | MS.gene90635:CDS |
| ACATGTGTAGCCACTTTCCC+CGG | 0.538816 | 3.2:-48255941 | None:intergenic |
| GGCTACACATGTCACTCAGC+AGG | 0.540185 | 3.2:+48255952 | MS.gene90635:CDS |
| ATGTTTATATACATCAGGCT+AGG | 0.540326 | 3.2:+48255528 | MS.gene90635:CDS |
| CTCTGCTTCCATAATAGACA+CGG | 0.542849 | 3.2:-48256618 | None:intergenic |
| GGTGGAGACTCAACCTTAGG+AGG | 0.548492 | 3.2:-48256208 | None:intergenic |
| TGAAACTTGTTCATGATTTG+GGG | 0.550211 | 3.2:-48256314 | None:intergenic |
| GGTTCACTTTCAATGTCCAT+AGG | 0.554954 | 3.2:-48256535 | None:intergenic |
| TCTGAGCTTTCATGAGCAGA+AGG | 0.558176 | 3.2:-48256262 | None:intergenic |
| CGAAGATTGTCGTTAAACAC+AGG | 0.561622 | 3.2:-48255665 | None:intergenic |
| TTTGTTGACACACTGCTTGG+TGG | 0.562603 | 3.2:-48256226 | None:intergenic |
| TAGCATAAACATCTTGCTTG+TGG | 0.568663 | 3.2:-48255574 | None:intergenic |
| GAGCACTCCAACGCATTCCT+CGG | 0.573851 | 3.2:-48255504 | None:intergenic |
| ACTTCAATGTCCTTAGAGGA+AGG | 0.576019 | 3.2:-48255452 | None:intergenic |
| TGTAGCACCGGTGTAAGCAA+TGG | 0.580116 | 3.2:-48255891 | None:intergenic |
| CAATTGTCCATTGCTTACAC+CGG | 0.580933 | 3.2:+48255884 | MS.gene90635:CDS |
| TGTTTATATACATCAGGCTA+GGG | 0.582616 | 3.2:+48255529 | MS.gene90635:CDS |
| GGAAGGACCGTTGCTTTGTG+TGG | 0.589066 | 3.2:-48255435 | None:intergenic |
| AGAACCTCAGTCTTGGGTGA+GGG | 0.590332 | 3.2:+48255386 | MS.gene90635:CDS |
| CAGTGGTGAGTCTGTGCAAG+TGG | 0.593745 | 3.2:+48256183 | MS.gene90635:CDS |
| AACTATCATGTCAAATGCCG+AGG | 0.594132 | 3.2:+48255487 | MS.gene90635:CDS |
| ACATGTCACTCAGCAGGACT+CGG | 0.594812 | 3.2:+48255958 | MS.gene90635:CDS |
| TCAAATGCCGAGGAATGCGT+TGG | 0.596916 | 3.2:+48255497 | MS.gene90635:CDS |
| GGACATTGAAGTCAATGGGA+AGG | 0.601234 | 3.2:+48255463 | MS.gene90635:CDS |
| CATAACATCAGGTGTAGCAC+CGG | 0.601546 | 3.2:-48255903 | None:intergenic |
| TCAGAAGTGCTAGTCCAGAA+TGG | 0.601594 | 3.2:+48255797 | MS.gene90635:CDS |
| TCTGCTTCCATAATAGACAC+GGG | 0.601885 | 3.2:-48256617 | None:intergenic |
| GACAATTGAACAAAACCTGA+AGG | 0.605270 | 3.2:-48255869 | None:intergenic |
| TATTGAGCCAGAGCCGCAGA+TGG | 0.613301 | 3.2:+48256438 | MS.gene90635:CDS |
| ATATCCTGCTGAACCATCTG+CGG | 0.615970 | 3.2:-48256451 | None:intergenic |
| ATCATTCGGAACAACACTTG+AGG | 0.622134 | 3.2:-48256386 | None:intergenic |
| TGGACTAGCACTTCTGACAA+TGG | 0.624686 | 3.2:-48255791 | None:intergenic |
| CTGCTTCCATAATAGACACG+GGG | 0.629788 | 3.2:-48256616 | None:intergenic |
| GGGTGATACAACAGATTGTG+GGG | 0.631149 | 3.2:-48255360 | None:intergenic |
| AGACCATTAATGGAGGTGGA+AGG | 0.648853 | 3.2:+48255639 | MS.gene90635:CDS |
| TGGCAATATCTGCTATGCCG+GGG | 0.667680 | 3.2:+48255924 | MS.gene90635:CDS |
| CTCACCCTCACCCAAGACTG+AGG | 0.674424 | 3.2:-48255390 | None:intergenic |
| AAGCAGTGTGTCAACAAATG+GGG | 0.677994 | 3.2:+48256231 | MS.gene90635:CDS |
| GATGTTACCACACAAAGCAA+CGG | 0.679929 | 3.2:+48255428 | MS.gene90635:CDS |
| GAAGATTGTCGTTAAACACA+GGG | 0.680691 | 3.2:-48255664 | None:intergenic |
| TCTACTAAGACCATTAATGG+AGG | 0.690612 | 3.2:+48255632 | MS.gene90635:CDS |
| GAAAGCTTCTCAGCATGCAG+TGG | 0.698296 | 3.2:+48256166 | MS.gene90635:CDS |
| TGAGTTATGGATGCTTAGCA+GGG | 0.699595 | 3.2:+48255724 | MS.gene90635:CDS |
| TGCTTCCATAATAGACACGG+GGG | 0.772529 | 3.2:-48256615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACCAAAGAAGTAAAAAAAG+TGG | + | chr3.2:48256339-48256358 | MS.gene90635:CDS | 25.0% |
| !! | TTAATGGTTTCGGAATATTT+TGG | + | chr3.2:48256055-48256074 | MS.gene90635:CDS | 25.0% |
| AATATTCCGAAACCATTAAG+TGG | - | chr3.2:48256054-48256073 | None:intergenic | 30.0% | |
| ATGTTTATATACATCAGGCT+AGG | + | chr3.2:48255528-48255547 | MS.gene90635:CDS | 30.0% | |
| TGATGCTGAAAATCATAGTT+CGG | + | chr3.2:48256123-48256142 | MS.gene90635:CDS | 30.0% | |
| TGTTTATATACATCAGGCTA+GGG | + | chr3.2:48255529-48255548 | MS.gene90635:CDS | 30.0% | |
| ! | CTCAATTTTATCCAAATCTC+TGG | - | chr3.2:48256002-48256021 | None:intergenic | 30.0% |
| ! | CTGAAACTTGTTCATGATTT+GGG | - | chr3.2:48256318-48256337 | None:intergenic | 30.0% |
| ! | TGAAACTTGTTCATGATTTG+GGG | - | chr3.2:48256317-48256336 | None:intergenic | 30.0% |
| !!! | GTCCACTTTTTTTACTTCTT+TGG | - | chr3.2:48256344-48256363 | None:intergenic | 30.0% |
| AAAAAAGTGGACGTCAAAGA+CGG | + | chr3.2:48256352-48256371 | MS.gene90635:CDS | 35.0% | |
| CATCTCTCAAATGTGAGTTA+TGG | + | chr3.2:48255711-48255730 | MS.gene90635:CDS | 35.0% | |
| CCAAATCATGAACAAGTTTC+AGG | + | chr3.2:48256316-48256335 | MS.gene90635:CDS | 35.0% | |
| CTAAGGACATTGAAGTCAAT+GGG | + | chr3.2:48255459-48255478 | MS.gene90635:CDS | 35.0% | |
| CTTGAATTTCCTGAAGTAGT+TGG | - | chr3.2:48256559-48256578 | None:intergenic | 35.0% | |
| GAAGATTGTCGTTAAACACA+GGG | - | chr3.2:48255667-48255686 | None:intergenic | 35.0% | |
| GACAATTGAACAAAACCTGA+AGG | - | chr3.2:48255872-48255891 | None:intergenic | 35.0% | |
| GCTCGATGTTTATATACATC+AGG | + | chr3.2:48255523-48255542 | MS.gene90635:CDS | 35.0% | |
| GGCTTAGGGAATAAATCATT+CGG | - | chr3.2:48256403-48256422 | None:intergenic | 35.0% | |
| GTCTCTACTAAGACCATTAA+TGG | + | chr3.2:48255629-48255648 | MS.gene90635:CDS | 35.0% | |
| TAGCATAAACATCTTGCTTG+TGG | - | chr3.2:48255577-48255596 | None:intergenic | 35.0% | |
| TATCTTGAAGATCAGTTGCT+TGG | + | chr3.2:48255755-48255774 | MS.gene90635:CDS | 35.0% | |
| TCAATATTCACAGTCACAAC+AGG | - | chr3.2:48256424-48256443 | None:intergenic | 35.0% | |
| TCTAAGGACATTGAAGTCAA+TGG | + | chr3.2:48255458-48255477 | MS.gene90635:CDS | 35.0% | |
| TCTACTAAGACCATTAATGG+AGG | + | chr3.2:48255632-48255651 | MS.gene90635:CDS | 35.0% | |
| ! | ATTGACTTCAATGTCCTTAG+AGG | - | chr3.2:48255459-48255478 | None:intergenic | 35.0% |
| ! | CAATCTTCGTCTCAATGTTT+TGG | + | chr3.2:48255679-48255698 | MS.gene90635:CDS | 35.0% |
| ! | CCTGAAACTTGTTCATGATT+TGG | - | chr3.2:48256319-48256338 | None:intergenic | 35.0% |
| ! | CTTTCTCTAGTTTACCATTC+TGG | - | chr3.2:48255814-48255833 | None:intergenic | 35.0% |
| AACTATCATGTCAAATGCCG+AGG | + | chr3.2:48255487-48255506 | MS.gene90635:CDS | 40.0% | |
| AAGCAGTGTGTCAACAAATG+GGG | + | chr3.2:48256231-48256250 | MS.gene90635:CDS | 40.0% | |
| AAGGGTGATACAACAGATTG+TGG | - | chr3.2:48255365-48255384 | None:intergenic | 40.0% | |
| ACTAAGACCATTAATGGAGG+TGG | + | chr3.2:48255635-48255654 | MS.gene90635:CDS | 40.0% | |
| ACTTCAATGTCCTTAGAGGA+AGG | - | chr3.2:48255455-48255474 | None:intergenic | 40.0% | |
| AGCGAAAATGAAGCTTCCTA+TGG | + | chr3.2:48256519-48256538 | MS.gene90635:CDS | 40.0% | |
| AGGGTGATACAACAGATTGT+GGG | - | chr3.2:48255364-48255383 | None:intergenic | 40.0% | |
| ATCATTCGGAACAACACTTG+AGG | - | chr3.2:48256389-48256408 | None:intergenic | 40.0% | |
| CAAGCAGTGTGTCAACAAAT+GGG | + | chr3.2:48256230-48256249 | MS.gene90635:CDS | 40.0% | |
| CAATTGTCCATTGCTTACAC+CGG | + | chr3.2:48255884-48255903 | MS.gene90635:CDS | 40.0% | |
| CGAAGACCACTTAATGGTTT+CGG | + | chr3.2:48256045-48256064 | MS.gene90635:CDS | 40.0% | |
| CGAAGATTGTCGTTAAACAC+AGG | - | chr3.2:48255668-48255687 | None:intergenic | 40.0% | |
| CTCTGCTTCCATAATAGACA+CGG | - | chr3.2:48256621-48256640 | None:intergenic | 40.0% | |
| GAAAATCATAGTTCGGAAGC+TGG | + | chr3.2:48256130-48256149 | MS.gene90635:CDS | 40.0% | |
| GAAAGTGAACCAACTACTTC+AGG | + | chr3.2:48256547-48256566 | MS.gene90635:CDS | 40.0% | |
| GATCTGTTTCATTCTCCTTC+AGG | + | chr3.2:48255854-48255873 | MS.gene90635:CDS | 40.0% | |
| GATGTTACCACACAAAGCAA+CGG | + | chr3.2:48255428-48255447 | MS.gene90635:CDS | 40.0% | |
| GCAGATATTGCCATAACATC+AGG | - | chr3.2:48255917-48255936 | None:intergenic | 40.0% | |
| GGTTCACTTTCAATGTCCAT+AGG | - | chr3.2:48256538-48256557 | None:intergenic | 40.0% | |
| TATGGCAATATCTGCTATGC+CGG | + | chr3.2:48255922-48255941 | MS.gene90635:CDS | 40.0% | |
| TCGTTTGCAATCTTAGGATC+TGG | - | chr3.2:48256028-48256047 | None:intergenic | 40.0% | |
| TCTGCTTCCATAATAGACAC+GGG | - | chr3.2:48256620-48256639 | None:intergenic | 40.0% | |
| TGAGTTATGGATGCTTAGCA+GGG | + | chr3.2:48255724-48255743 | MS.gene90635:CDS | 40.0% | |
| TGCAAACGAAGACCACTTAA+TGG | + | chr3.2:48256039-48256058 | MS.gene90635:CDS | 40.0% | |
| TGGTCTTCGTTTGCAATCTT+AGG | - | chr3.2:48256034-48256053 | None:intergenic | 40.0% | |
| TGTTCTCTGGATTACTTGTC+AGG | - | chr3.2:48255607-48255626 | None:intergenic | 40.0% | |
| TTAGTAGAGACACTGTTCTC+TGG | - | chr3.2:48255620-48255639 | None:intergenic | 40.0% | |
| ! | TTGTTCATGATTTGGGGACT+TGG | - | chr3.2:48256311-48256330 | None:intergenic | 40.0% |
| !!! | ATATTTTGGCATTTCGTGCG+AGG | + | chr3.2:48256069-48256088 | MS.gene90635:CDS | 40.0% |
| !!! | TCAGTTGCTTGGTTTTGCTT+TGG | + | chr3.2:48255766-48255785 | MS.gene90635:CDS | 40.0% |
| AGACCATTAATGGAGGTGGA+AGG | + | chr3.2:48255639-48255658 | MS.gene90635:CDS | 45.0% | |
| ATATCCTGCTGAACCATCTG+CGG | - | chr3.2:48256454-48256473 | None:intergenic | 45.0% | |
| ATGGCAATATCTGCTATGCC+GGG | + | chr3.2:48255923-48255942 | MS.gene90635:CDS | 45.0% | |
| CATAACATCAGGTGTAGCAC+CGG | - | chr3.2:48255906-48255925 | None:intergenic | 45.0% | |
| CCAAGCAGTGTGTCAACAAA+TGG | + | chr3.2:48256229-48256248 | MS.gene90635:CDS | 45.0% | |
| CTCGGAAACATGTGAGTCAT+TGG | + | chr3.2:48255976-48255995 | MS.gene90635:CDS | 45.0% | |
| CTGCTTCCATAATAGACACG+GGG | - | chr3.2:48256619-48256638 | None:intergenic | 45.0% | |
| GGACATTGAAGTCAATGGGA+AGG | + | chr3.2:48255463-48255482 | MS.gene90635:CDS | 45.0% | |
| GGGTGATACAACAGATTGTG+GGG | - | chr3.2:48255363-48255382 | None:intergenic | 45.0% | |
| GTGAGTTATGGATGCTTAGC+AGG | + | chr3.2:48255723-48255742 | MS.gene90635:CDS | 45.0% | |
| GTTCCTTCCACCTCCATTAA+TGG | - | chr3.2:48255645-48255664 | None:intergenic | 45.0% | |
| TCACAGTCACAACAGGCTTA+GGG | - | chr3.2:48256417-48256436 | None:intergenic | 45.0% | |
| TCTGAGCTTTCATGAGCAGA+AGG | - | chr3.2:48256265-48256284 | None:intergenic | 45.0% | |
| TGAGTCATTGGCCAGAGATT+TGG | + | chr3.2:48255988-48256007 | MS.gene90635:CDS | 45.0% | |
| TGCTTCCATAATAGACACGG+GGG | - | chr3.2:48256618-48256637 | None:intergenic | 45.0% | |
| TTCACAGTCACAACAGGCTT+AGG | - | chr3.2:48256418-48256437 | None:intergenic | 45.0% | |
| TTTGTTGACACACTGCTTGG+TGG | - | chr3.2:48256229-48256248 | None:intergenic | 45.0% | |
| ! | ACCCAAGACTGAGGTTCTAA+AGG | - | chr3.2:48255384-48255403 | None:intergenic | 45.0% |
| ! | CCATTTGTTGACACACTGCT+TGG | - | chr3.2:48256232-48256251 | None:intergenic | 45.0% |
| ! | GGGTTAGCGTTCTTAGTTTG+CGG | - | chr3.2:48256598-48256617 | None:intergenic | 45.0% |
| !! | ACCCTTTAGAACCTCAGTCT+TGG | + | chr3.2:48255379-48255398 | MS.gene90635:CDS | 45.0% |
| !! | CCCAAGACTGAGGTTCTAAA+GGG | - | chr3.2:48255383-48255402 | None:intergenic | 45.0% |
| !! | CCCTTTAGAACCTCAGTCTT+GGG | + | chr3.2:48255380-48255399 | MS.gene90635:CDS | 45.0% |
| !! | TCAGAAGTGCTAGTCCAGAA+TGG | + | chr3.2:48255797-48255816 | MS.gene90635:CDS | 45.0% |
| !! | TGGACTAGCACTTCTGACAA+TGG | - | chr3.2:48255794-48255813 | None:intergenic | 45.0% |
| AAGCAACGGTCCTTCCTCTA+AGG | + | chr3.2:48255442-48255461 | MS.gene90635:CDS | 50.0% | |
| ACATGTCACTCAGCAGGACT+CGG | + | chr3.2:48255958-48255977 | MS.gene90635:CDS | 50.0% | |
| AGAACCTCAGTCTTGGGTGA+GGG | + | chr3.2:48255386-48255405 | MS.gene90635:CDS | 50.0% | |
| CTTGGTGGAGACTCAACCTT+AGG | - | chr3.2:48256214-48256233 | None:intergenic | 50.0% | |
| GAAAGCTTCTCAGCATGCAG+TGG | + | chr3.2:48256166-48256185 | MS.gene90635:CDS | 50.0% | |
| GACTCAGTGCTCTGATAGCT+TGG | + | chr3.2:48256093-48256112 | MS.gene90635:CDS | 50.0% | |
| GCTAACCCCCGTGTCTATTA+TGG | + | chr3.2:48256610-48256629 | MS.gene90635:CDS | 50.0% | |
| TAGAACCTCAGTCTTGGGTG+AGG | + | chr3.2:48255385-48255404 | MS.gene90635:CDS | 50.0% | |
| TCAAATGCCGAGGAATGCGT+TGG | + | chr3.2:48255497-48255516 | MS.gene90635:CDS | 50.0% | |
| TGGCAATATCTGCTATGCCG+GGG | + | chr3.2:48255924-48255943 | MS.gene90635:CDS | 50.0% | |
| TGTGCAAGTGGAACCTCCTA+AGG | + | chr3.2:48256195-48256214 | MS.gene90635:CDS | 50.0% | |
| ! | ACATGTGTAGCCACTTTCCC+CGG | - | chr3.2:48255944-48255963 | None:intergenic | 50.0% |
| !! | CGGTGCTACACCTGATGTTA+TGG | + | chr3.2:48255904-48255923 | MS.gene90635:CDS | 50.0% |
| !! | TGTAGCACCGGTGTAAGCAA+TGG | - | chr3.2:48255894-48255913 | None:intergenic | 50.0% |
| ATCTGCTATGCCGGGGAAAG+TGG | + | chr3.2:48255931-48255950 | MS.gene90635:CDS | 55.0% | |
| CAGTGGTGAGTCTGTGCAAG+TGG | + | chr3.2:48256183-48256202 | MS.gene90635:CDS | 55.0% | |
| GAGCACTCCAACGCATTCCT+CGG | - | chr3.2:48255507-48255526 | None:intergenic | 55.0% | |
| GGAAGCTGGTGTTCGTCTTG+TGG | + | chr3.2:48256144-48256163 | MS.gene90635:CDS | 55.0% | |
| GGCTACACATGTCACTCAGC+AGG | + | chr3.2:48255952-48255971 | MS.gene90635:CDS | 55.0% | |
| GGTGGAGACTCAACCTTAGG+AGG | - | chr3.2:48256211-48256230 | None:intergenic | 55.0% | |
| TATTGAGCCAGAGCCGCAGA+TGG | + | chr3.2:48256438-48256457 | MS.gene90635:CDS | 55.0% | |
| ! | GGAAGGACCGTTGCTTTGTG+TGG | - | chr3.2:48255438-48255457 | None:intergenic | 55.0% |
| AGAGCCGCAGATGGTTCAGC+AGG | + | chr3.2:48256447-48256466 | MS.gene90635:CDS | 60.0% | |
| CTCACCCTCACCCAAGACTG+AGG | - | chr3.2:48255393-48255412 | None:intergenic | 60.0% | |
| TGCTGAACCATCTGCGGCTC+TGG | - | chr3.2:48256448-48256467 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 48255347 | 48256651 | 48255347 | ID=MS.gene90635 |
| chr3.2 | mRNA | 48255347 | 48256651 | 48255347 | ID=MS.gene90635.t1;Parent=MS.gene90635 |
| chr3.2 | exon | 48255347 | 48256651 | 48255347 | ID=MS.gene90635.t1.exon1;Parent=MS.gene90635.t1 |
| chr3.2 | CDS | 48255347 | 48256651 | 48255347 | ID=cds.MS.gene90635.t1;Parent=MS.gene90635.t1 |
| Gene Sequence |
| Protein sequence |
