Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90829.t1 | XP_013470473.1 | 85.5 | 427 | 5 | 1 | 1 | 370 | 58 | 484 | 2.60E-207 | 731.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90829.t1 | Q9LZ72 | 61.0 | 405 | 115 | 3 | 2 | 363 | 60 | 464 | 8.5e-143 | 508.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90829.t1 | A0A072VS55 | 85.5 | 427 | 5 | 1 | 1 | 370 | 58 | 484 | 1.9e-207 | 731.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051860 | MS.gene90829 | 0.821665 | 3.58E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene90829 | -0.825973 | 3.50E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene90829 | 0.802567 | 5.28E-49 | -1.69E-46 |
| MS.gene054010 | MS.gene90829 | 0.83218 | 1.10E-55 | -1.69E-46 |
| MS.gene054011 | MS.gene90829 | 0.851808 | 6.97E-61 | -1.69E-46 |
| MS.gene054012 | MS.gene90829 | 0.843561 | 1.30E-58 | -1.69E-46 |
| MS.gene054013 | MS.gene90829 | 0.839331 | 1.69E-57 | -1.69E-46 |
| MS.gene054183 | MS.gene90829 | 0.829428 | 5.18E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene90829 | 0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene057929 | MS.gene90829 | 0.813372 | 2.65E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene90829 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene90829 | 0.812801 | 3.53E-51 | -1.69E-46 |
| MS.gene059876 | MS.gene90829 | 0.830749 | 2.46E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90829.t1 | MTR_1g115560 | 84.075 | 427 | 11 | 2 | 1 | 370 | 58 | 484 | 0.0 | 716 |
| MS.gene90829.t1 | MTR_4g062170 | 54.863 | 401 | 133 | 1 | 2 | 354 | 58 | 458 | 3.73e-161 | 460 |
| MS.gene90829.t1 | MTR_4g062190 | 53.483 | 402 | 138 | 1 | 2 | 354 | 58 | 459 | 1.43e-158 | 454 |
| MS.gene90829.t1 | MTR_4g062270 | 54.453 | 393 | 139 | 1 | 2 | 354 | 58 | 450 | 4.70e-158 | 452 |
| MS.gene90829.t1 | MTR_2g096210 | 53.598 | 403 | 136 | 2 | 3 | 354 | 59 | 461 | 1.03e-153 | 441 |
| MS.gene90829.t1 | MTR_7g118170 | 40.909 | 374 | 178 | 3 | 6 | 337 | 153 | 525 | 9.42e-99 | 303 |
| MS.gene90829.t1 | MTR_4g070270 | 41.129 | 372 | 180 | 4 | 9 | 342 | 134 | 504 | 6.13e-97 | 297 |
| MS.gene90829.t1 | MTR_3g105550 | 37.534 | 373 | 185 | 2 | 13 | 337 | 161 | 533 | 4.88e-95 | 293 |
| MS.gene90829.t1 | MTR_2g054940 | 40.270 | 370 | 181 | 4 | 9 | 339 | 136 | 504 | 6.60e-94 | 290 |
| MS.gene90829.t1 | MTR_1g110930 | 40.220 | 363 | 178 | 3 | 13 | 337 | 126 | 487 | 1.20e-93 | 289 |
| MS.gene90829.t1 | MTR_5g056510 | 40.220 | 363 | 178 | 3 | 13 | 337 | 126 | 487 | 6.09e-93 | 287 |
| MS.gene90829.t1 | MTR_1g076430 | 39.674 | 368 | 182 | 3 | 9 | 337 | 137 | 503 | 2.06e-92 | 286 |
| MS.gene90829.t1 | MTR_1g041085 | 38.315 | 368 | 187 | 3 | 9 | 337 | 143 | 509 | 3.22e-89 | 278 |
| MS.gene90829.t1 | MTR_2g007020 | 37.802 | 373 | 190 | 5 | 5 | 337 | 78 | 448 | 3.85e-85 | 266 |
| MS.gene90829.t1 | MTR_6g032965 | 37.302 | 378 | 194 | 4 | 2 | 337 | 5 | 381 | 1.14e-84 | 262 |
| MS.gene90829.t1 | MTR_6g074880 | 36.828 | 372 | 194 | 4 | 9 | 340 | 98 | 468 | 3.23e-84 | 263 |
| MS.gene90829.t1 | MTR_4g054415 | 35.733 | 375 | 200 | 4 | 5 | 339 | 51 | 424 | 3.33e-83 | 259 |
| MS.gene90829.t1 | MTR_4g054630 | 35.733 | 375 | 200 | 4 | 5 | 339 | 92 | 465 | 6.01e-83 | 260 |
| MS.gene90829.t1 | MTR_2g436480 | 35.657 | 373 | 199 | 3 | 9 | 341 | 81 | 452 | 7.58e-82 | 257 |
| MS.gene90829.t1 | MTR_7g118160 | 41.042 | 307 | 145 | 2 | 67 | 337 | 110 | 416 | 2.41e-81 | 255 |
| MS.gene90829.t1 | MTR_7g081695 | 38.315 | 368 | 175 | 5 | 9 | 337 | 136 | 490 | 3.42e-81 | 263 |
| MS.gene90829.t1 | MTR_3g072940 | 38.133 | 375 | 187 | 6 | 9 | 342 | 117 | 487 | 9.43e-79 | 250 |
| MS.gene90829.t1 | MTR_1g102290 | 38.753 | 369 | 185 | 4 | 9 | 337 | 116 | 483 | 9.53e-79 | 250 |
| MS.gene90829.t1 | MTR_3g072980 | 38.133 | 375 | 187 | 6 | 9 | 342 | 117 | 487 | 1.07e-78 | 250 |
| MS.gene90829.t1 | MTR_4g113280 | 36.486 | 370 | 184 | 5 | 9 | 339 | 125 | 482 | 1.08e-78 | 250 |
| MS.gene90829.t1 | MTR_6g051440 | 38.667 | 375 | 185 | 6 | 9 | 342 | 116 | 486 | 2.30e-74 | 239 |
| MS.gene90829.t1 | MTR_2g013740 | 34.930 | 355 | 197 | 2 | 2 | 323 | 139 | 492 | 2.37e-74 | 239 |
| MS.gene90829.t1 | MTR_4g054260 | 32.549 | 255 | 115 | 5 | 125 | 339 | 87 | 324 | 6.72e-37 | 136 |
| MS.gene90829.t1 | MTR_4g053905 | 45.361 | 97 | 50 | 1 | 247 | 340 | 63 | 159 | 4.22e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90829.t1 | AT5G04530 | 60.988 | 405 | 115 | 3 | 2 | 363 | 60 | 464 | 0.0 | 515 |
| MS.gene90829.t1 | AT2G28630 | 52.334 | 407 | 141 | 2 | 2 | 355 | 58 | 464 | 1.68e-154 | 443 |
| MS.gene90829.t1 | AT2G28630 | 52.334 | 407 | 141 | 2 | 2 | 355 | 58 | 464 | 1.68e-154 | 443 |
| MS.gene90829.t1 | AT1G07720 | 52.078 | 409 | 142 | 2 | 1 | 355 | 57 | 465 | 1.20e-150 | 434 |
| MS.gene90829.t1 | AT1G07720 | 52.078 | 409 | 142 | 2 | 1 | 355 | 100 | 508 | 1.47e-150 | 435 |
| MS.gene90829.t1 | AT4G34510 | 40.385 | 364 | 177 | 3 | 13 | 337 | 120 | 482 | 5.76e-96 | 294 |
| MS.gene90829.t1 | AT2G46720 | 38.378 | 370 | 186 | 3 | 9 | 337 | 94 | 462 | 9.58e-96 | 293 |
| MS.gene90829.t1 | AT1G19440 | 39.344 | 366 | 177 | 4 | 13 | 337 | 150 | 511 | 2.76e-95 | 293 |
| MS.gene90829.t1 | AT1G01120 | 40.669 | 359 | 168 | 4 | 21 | 337 | 168 | 523 | 6.42e-95 | 293 |
| MS.gene90829.t1 | AT2G16280 | 40.274 | 365 | 179 | 3 | 11 | 337 | 144 | 507 | 9.80e-95 | 292 |
| MS.gene90829.t1 | AT2G15090 | 39.891 | 366 | 175 | 4 | 13 | 337 | 115 | 476 | 2.14e-94 | 290 |
| MS.gene90829.t1 | AT4G34250 | 39.891 | 366 | 175 | 4 | 13 | 337 | 123 | 484 | 2.91e-93 | 288 |
| MS.gene90829.t1 | AT1G25450 | 39.394 | 363 | 181 | 3 | 13 | 337 | 122 | 483 | 5.08e-92 | 285 |
| MS.gene90829.t1 | AT1G68530 | 38.843 | 363 | 183 | 3 | 13 | 337 | 127 | 488 | 1.10e-90 | 281 |
| MS.gene90829.t1 | AT4G34520 | 40.054 | 367 | 174 | 4 | 13 | 337 | 125 | 487 | 1.75e-90 | 281 |
| MS.gene90829.t1 | AT1G04220 | 37.922 | 385 | 189 | 5 | 2 | 337 | 129 | 512 | 2.40e-89 | 278 |
| MS.gene90829.t1 | AT3G10280 | 37.027 | 370 | 184 | 4 | 9 | 337 | 94 | 455 | 1.07e-88 | 275 |
| MS.gene90829.t1 | AT5G43760 | 38.021 | 384 | 189 | 5 | 2 | 337 | 135 | 517 | 3.05e-87 | 273 |
| MS.gene90829.t1 | AT2G26640 | 38.859 | 368 | 185 | 4 | 9 | 337 | 134 | 500 | 4.77e-87 | 272 |
| MS.gene90829.t1 | AT1G71160 | 38.162 | 359 | 184 | 3 | 16 | 337 | 88 | 445 | 3.16e-84 | 263 |
| MS.gene90829.t1 | AT5G49070 | 36.554 | 383 | 193 | 5 | 6 | 342 | 82 | 460 | 3.18e-80 | 253 |
| MS.gene90829.t1 | AT3G52160 | 33.618 | 351 | 212 | 4 | 1 | 345 | 1 | 336 | 6.87e-71 | 225 |
| MS.gene90829.t1 | AT3G52160 | 34.650 | 329 | 207 | 3 | 1 | 323 | 114 | 440 | 2.02e-69 | 225 |
| MS.gene90829.t1 | AT2G26250 | 40.678 | 236 | 139 | 1 | 9 | 244 | 155 | 389 | 2.97e-62 | 209 |
| MS.gene90829.t1 | AT2G26250 | 45.455 | 99 | 51 | 1 | 242 | 337 | 449 | 547 | 1.30e-24 | 105 |
| MS.gene90829.t1 | AT1G68530 | 41.126 | 231 | 135 | 1 | 13 | 243 | 127 | 356 | 6.91e-60 | 198 |
| MS.gene90829.t1 | AT5G49070 | 37.021 | 235 | 141 | 2 | 6 | 237 | 82 | 312 | 1.14e-44 | 156 |
Find 59 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAAAGATTCTCCCATTT+TGG | 0.117044 | 1.4:+87800940 | MS.gene90829:CDS |
| CTTCCTTCAAGAACGTTTCT+TGG | 0.199155 | 1.4:-87800321 | None:intergenic |
| TCCCAAAATGGGAGAATCTT+TGG | 0.263372 | 1.4:-87800942 | None:intergenic |
| GACAGTAAATTTACAGTCTA+TGG | 0.278528 | 1.4:+87800917 | MS.gene90829:CDS |
| AAAGGATTATTGAGTGTATC+TGG | 0.291860 | 1.4:-87801416 | None:intergenic |
| ATACTTCTGCTGGTGGATTA+TGG | 0.292782 | 1.4:+87801231 | MS.gene90829:CDS |
| AGCAGATTTAACAAGACTTT+TGG | 0.328960 | 1.4:-87800883 | None:intergenic |
| AACCTGACCAGTTCCCAAAA+TGG | 0.338184 | 1.4:-87800954 | None:intergenic |
| TTAAGTGTAATAATTGTGTT+TGG | 0.339072 | 1.4:+87801333 | MS.gene90829:CDS |
| GGTGGTAGGGCAGTTATTGA+TGG | 0.340936 | 1.4:+87801137 | MS.gene90829:intron |
| GTCTTCAATCTTGCAGGAAT+GGG | 0.346369 | 1.4:+87800543 | MS.gene90829:CDS |
| AGTTATTGATGGGGTTGGTA+AGG | 0.349662 | 1.4:+87801148 | MS.gene90829:CDS |
| GTAAAAGTCTTCAATCTTGC+AGG | 0.353247 | 1.4:+87800537 | MS.gene90829:CDS |
| CTTAAAACCATGGTTAGTTC+AGG | 0.363565 | 1.4:+87800276 | MS.gene90829:CDS |
| ATTTGTCTGATACTAATGTT+TGG | 0.369574 | 1.4:+87801369 | MS.gene90829:CDS |
| CCCAAAATGGGAGAATCTTT+GGG | 0.386365 | 1.4:-87800941 | None:intergenic |
| TAGGATGGCACTTCATCGTT+GGG | 0.405904 | 1.4:+87801205 | MS.gene90829:CDS |
| TTGATGATTAGTCTTGGAGC+TGG | 0.423250 | 1.4:+87801308 | MS.gene90829:CDS |
| AAAACATATGAAAATTCCCT+TGG | 0.437613 | 1.4:+87800612 | MS.gene90829:CDS |
| CAGAAGATCTTGGCTCTCAT+TGG | 0.438630 | 1.4:+87800649 | MS.gene90829:CDS |
| GTTATTGATGGGGTTGGTAA+GGG | 0.442438 | 1.4:+87801149 | MS.gene90829:CDS |
| ACCTGACCAGTTCCCAAAAT+GGG | 0.447146 | 1.4:-87800953 | None:intergenic |
| GTGGTAGGGCAGTTATTGAT+GGG | 0.447295 | 1.4:+87801138 | MS.gene90829:intron |
| ATATCTTAGCTTTGTGAGGT+TGG | 0.447838 | 1.4:+87801469 | MS.gene90829:CDS |
| TTGTGTTTGGGAAGTTATGA+AGG | 0.449292 | 1.4:+87801346 | MS.gene90829:CDS |
| TGTCCAAGAAACGTTCTTGA+AGG | 0.449388 | 1.4:+87800318 | MS.gene90829:CDS |
| TCATATGTGTCTTTAAGAGT+TGG | 0.461513 | 1.4:-87800354 | None:intergenic |
| AGAGGCTTAAGAAAGGTGAT+AGG | 0.463294 | 1.4:+87801282 | MS.gene90829:CDS |
| CATGTGTTTCAGTTTCAAGA+TGG | 0.463864 | 1.4:-87800772 | None:intergenic |
| TAAGTGTAATAATTGTGTTT+GGG | 0.472156 | 1.4:+87801334 | MS.gene90829:CDS |
| CGATGAAGTGCCATCCTAGC+TGG | 0.483902 | 1.4:-87801200 | None:intergenic |
| AGTCTTCAATCTTGCAGGAA+TGG | 0.484453 | 1.4:+87800542 | MS.gene90829:CDS |
| CACATGGAAAGAACACAGTA+TGG | 0.488505 | 1.4:+87800789 | MS.gene90829:CDS |
| CTAGGATGGCACTTCATCGT+TGG | 0.495311 | 1.4:+87801204 | MS.gene90829:CDS |
| CGTTGGGGTAATACTTCTGC+TGG | 0.498272 | 1.4:+87801221 | MS.gene90829:CDS |
| TGATGATTAGTCTTGGAGCT+GGG | 0.508912 | 1.4:+87801309 | MS.gene90829:CDS |
| ACCATGGTTAGTTCAGGAAT+CGG | 0.511336 | 1.4:+87800282 | MS.gene90829:CDS |
| TGATCTTGAGCCAGCTAGGA+TGG | 0.522671 | 1.4:+87801190 | MS.gene90829:CDS |
| GTTGTGAGCACAGAAGATCT+TGG | 0.526835 | 1.4:+87800639 | MS.gene90829:CDS |
| ATTATTCTTGCTGTGAGTGA+AGG | 0.536137 | 1.4:-87800489 | None:intergenic |
| AATATGATCTTGAGCCAGCT+AGG | 0.540062 | 1.4:+87801186 | MS.gene90829:CDS |
| CTGTGCTCACAACAATTCCA+AGG | 0.544367 | 1.4:-87800629 | None:intergenic |
| TTACAATTGTTGCATACAAG+TGG | 0.555295 | 1.4:+87800827 | MS.gene90829:CDS |
| AGGGCAGTTATTGATGGGGT+TGG | 0.556135 | 1.4:+87801143 | MS.gene90829:intron |
| ATACAAGTGGAAGATGAAGA+AGG | 0.560414 | 1.4:+87800840 | MS.gene90829:CDS |
| TAGATTCCTCCTTAAAACCA+TGG | 0.562273 | 1.4:+87800266 | MS.gene90829:CDS |
| TGGGGTAATACTTCTGCTGG+TGG | 0.565909 | 1.4:+87801224 | MS.gene90829:CDS |
| ACAAGAATGTCTATTTCTGA+AGG | 0.580320 | 1.4:-87800438 | None:intergenic |
| CTTGCTGTGAGTGAAGGTGC+TGG | 0.586342 | 1.4:-87800483 | None:intergenic |
| ATCTAAATTCCTCAAGACCT+AGG | 0.588769 | 1.4:-87800248 | None:intergenic |
| ACCGATTCCTGAACTAACCA+TGG | 0.589832 | 1.4:-87800283 | None:intergenic |
| ATGAATATCTTAGCTTTGTG+AGG | 0.604029 | 1.4:+87801465 | MS.gene90829:CDS |
| CTTGGCTCTCATTGGTACTG+TGG | 0.621208 | 1.4:+87800657 | MS.gene90829:CDS |
| TCTTCAATCTTGCAGGAATG+GGG | 0.635113 | 1.4:+87800544 | MS.gene90829:CDS |
| CATCTTGAAACTGAAACACA+TGG | 0.639110 | 1.4:+87800773 | MS.gene90829:CDS |
| TGGTAGGGCAGTTATTGATG+GGG | 0.644981 | 1.4:+87801139 | MS.gene90829:intron |
| TGTGCTCACAACAATTCCAA+GGG | 0.652013 | 1.4:-87800628 | None:intergenic |
| AGGATGGCACTTCATCGTTG+GGG | 0.671813 | 1.4:+87801206 | MS.gene90829:CDS |
| GGATTATTGAGTGTATCTGG+AGG | 0.693373 | 1.4:-87801413 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACCTAAATTTAATATGT+TGG | + | chr1.4:87801064-87801083 | MS.gene90829:intron | 15.0% |
| !! | AAACCTAAATTTAATATGTT+GGG | + | chr1.4:87801065-87801084 | MS.gene90829:intron | 15.0% |
| !! | AGTATGAAAAAAGTTGAATT+TGG | + | chr1.4:87800999-87801018 | MS.gene90829:intron | 20.0% |
| !! | TAAGTGTAATAATTGTGTTT+GGG | + | chr1.4:87801334-87801353 | MS.gene90829:CDS | 20.0% |
| !! | TTAAGTGTAATAATTGTGTT+TGG | + | chr1.4:87801333-87801352 | MS.gene90829:CDS | 20.0% |
| !!! | CAATTATACTTTTCCTTAAA+AGG | - | chr1.4:87801437-87801456 | None:intergenic | 20.0% |
| !!! | CTTTTAAGGAAAAGTATAAT+TGG | + | chr1.4:87801435-87801454 | MS.gene90829:CDS | 20.0% |
| !!! | TTTATTTTGTTTTTGAACCT+TGG | + | chr1.4:87801029-87801048 | MS.gene90829:intron | 20.0% |
| ! | AAAACATATGAAAATTCCCT+TGG | + | chr1.4:87800612-87800631 | MS.gene90829:CDS | 25.0% |
| ! | ATTTGTCTGATACTAATGTT+TGG | + | chr1.4:87801369-87801388 | MS.gene90829:CDS | 25.0% |
| ! | CTAAATTTAATATGTTGGGA+GGG | + | chr1.4:87801069-87801088 | MS.gene90829:intron | 25.0% |
| ! | TAAATTTAATATGTTGGGAG+GGG | + | chr1.4:87801070-87801089 | MS.gene90829:intron | 25.0% |
| !! | GTTTTATAACCATTTTACCA+AGG | - | chr1.4:87801049-87801068 | None:intergenic | 25.0% |
| !! | TACACTCAATAATCCTTTTA+AGG | + | chr1.4:87801421-87801440 | MS.gene90829:CDS | 25.0% |
| !!! | AGAAACATGTTTTTTTGAAG+AGG | - | chr1.4:87800416-87800435 | None:intergenic | 25.0% |
| !!! | ATGGTATGTTTTAGGTTATA+TGG | + | chr1.4:87801250-87801269 | MS.gene90829:CDS | 25.0% |
| AAAGGATTATTGAGTGTATC+TGG | - | chr1.4:87801419-87801438 | None:intergenic | 30.0% | |
| AAATTTAATATGTTGGGAGG+GGG | + | chr1.4:87801071-87801090 | MS.gene90829:intron | 30.0% | |
| CCTAAATTTAATATGTTGGG+AGG | + | chr1.4:87801068-87801087 | MS.gene90829:intron | 30.0% | |
| CCTCCCAACATATTAAATTT+AGG | - | chr1.4:87801071-87801090 | None:intergenic | 30.0% | |
| GACAGTAAATTTACAGTCTA+TGG | + | chr1.4:87800917-87800936 | MS.gene90829:CDS | 30.0% | |
| GTTATATGGAAGCAAAAAAG+AGG | + | chr1.4:87801264-87801283 | MS.gene90829:CDS | 30.0% | |
| TTACAATTGTTGCATACAAG+TGG | + | chr1.4:87800827-87800846 | MS.gene90829:CDS | 30.0% | |
| ! | AGCAGATTTAACAAGACTTT+TGG | - | chr1.4:87800886-87800905 | None:intergenic | 30.0% |
| ! | GTTTTTGAACCTTGGTAAAA+TGG | + | chr1.4:87801037-87801056 | MS.gene90829:intron | 30.0% |
| ! | TCATATGTGTCTTTAAGAGT+TGG | - | chr1.4:87800357-87800376 | None:intergenic | 30.0% |
| !! | ACAAGAATGTCTATTTCTGA+AGG | - | chr1.4:87800441-87800460 | None:intergenic | 30.0% |
| !! | ATGAATATCTTAGCTTTGTG+AGG | + | chr1.4:87801465-87801484 | MS.gene90829:CDS | 30.0% |
| !!! | AGGATTTTGATGATTAGTCT+TGG | + | chr1.4:87801302-87801321 | MS.gene90829:CDS | 30.0% |
| !!! | TGTTTTGTTTGTGAAAAGCA+TGG | - | chr1.4:87800736-87800755 | None:intergenic | 30.0% |
| AAACAAAAACCTAGGTCTTG+AGG | + | chr1.4:87800239-87800258 | MS.gene90829:CDS | 35.0% | |
| ATACAAGTGGAAGATGAAGA+AGG | + | chr1.4:87800840-87800859 | MS.gene90829:CDS | 35.0% | |
| ATCTAAATTCCTCAAGACCT+AGG | - | chr1.4:87800251-87800270 | None:intergenic | 35.0% | |
| CATCTTGAAACTGAAACACA+TGG | + | chr1.4:87800773-87800792 | MS.gene90829:CDS | 35.0% | |
| CATGTGTTTCAGTTTCAAGA+TGG | - | chr1.4:87800775-87800794 | None:intergenic | 35.0% | |
| GCAAAAAAGAGGCTTAAGAA+AGG | + | chr1.4:87801275-87801294 | MS.gene90829:CDS | 35.0% | |
| GTAAAAGTCTTCAATCTTGC+AGG | + | chr1.4:87800537-87800556 | MS.gene90829:CDS | 35.0% | |
| TAGATTCCTCCTTAAAACCA+TGG | + | chr1.4:87800266-87800285 | MS.gene90829:CDS | 35.0% | |
| TTGTGTTTGGGAAGTTATGA+AGG | + | chr1.4:87801346-87801365 | MS.gene90829:CDS | 35.0% | |
| ! | ATTATTCTTGCTGTGAGTGA+AGG | - | chr1.4:87800492-87800511 | None:intergenic | 35.0% |
| ! | CTTAAAACCATGGTTAGTTC+AGG | + | chr1.4:87800276-87800295 | MS.gene90829:CDS | 35.0% |
| ! | GAACATTTTTGTGTTCATCC+TGG | + | chr1.4:87801116-87801135 | MS.gene90829:intron | 35.0% |
| !! | ATATCTTAGCTTTGTGAGGT+TGG | + | chr1.4:87801469-87801488 | MS.gene90829:CDS | 35.0% |
| !! | CTGAACTAACCATGGTTTTA+AGG | - | chr1.4:87800278-87800297 | None:intergenic | 35.0% |
| !! | GAGGTTGGATTTTAGTACTA+TGG | + | chr1.4:87801484-87801503 | MS.gene90829:CDS | 35.0% |
| !!! | AACTAACCATGGTTTTAAGG+AGG | - | chr1.4:87800275-87800294 | None:intergenic | 35.0% |
| !!! | GGTGGATTATGGTATGTTTT+AGG | + | chr1.4:87801242-87801261 | MS.gene90829:CDS | 35.0% |
| AATATGATCTTGAGCCAGCT+AGG | + | chr1.4:87801186-87801205 | MS.gene90829:CDS | 40.0% | |
| AGAGGCTTAAGAAAGGTGAT+AGG | + | chr1.4:87801282-87801301 | MS.gene90829:CDS | 40.0% | |
| AGTCTTCAATCTTGCAGGAA+TGG | + | chr1.4:87800542-87800561 | MS.gene90829:CDS | 40.0% | |
| CACATGGAAAGAACACAGTA+TGG | + | chr1.4:87800789-87800808 | MS.gene90829:CDS | 40.0% | |
| CCCAAAATGGGAGAATCTTT+GGG | - | chr1.4:87800944-87800963 | None:intergenic | 40.0% | |
| CTTCCTTCAAGAACGTTTCT+TGG | - | chr1.4:87800324-87800343 | None:intergenic | 40.0% | |
| GGATTATTGAGTGTATCTGG+AGG | - | chr1.4:87801416-87801435 | None:intergenic | 40.0% | |
| GGGGGTTTGAATTTGAAAAG+TGG | + | chr1.4:87801089-87801108 | MS.gene90829:intron | 40.0% | |
| GTCTTCAATCTTGCAGGAAT+GGG | + | chr1.4:87800543-87800562 | MS.gene90829:CDS | 40.0% | |
| TCCCAAAATGGGAGAATCTT+TGG | - | chr1.4:87800945-87800964 | None:intergenic | 40.0% | |
| TCTTCAATCTTGCAGGAATG+GGG | + | chr1.4:87800544-87800563 | MS.gene90829:CDS | 40.0% | |
| TGTCCAAGAAACGTTCTTGA+AGG | + | chr1.4:87800318-87800337 | MS.gene90829:CDS | 40.0% | |
| TGTGCTCACAACAATTCCAA+GGG | - | chr1.4:87800631-87800650 | None:intergenic | 40.0% | |
| ! | ACCATGGTTAGTTCAGGAAT+CGG | + | chr1.4:87800282-87800301 | MS.gene90829:CDS | 40.0% |
| ! | CATTTTTGTGTTCATCCTGG+TGG | + | chr1.4:87801119-87801138 | MS.gene90829:intron | 40.0% |
| ! | CCCAAAGATTCTCCCATTTT+GGG | + | chr1.4:87800941-87800960 | MS.gene90829:CDS | 40.0% |
| ! | GAAGATGAAGAAGGTTTTGC+AGG | + | chr1.4:87800849-87800868 | MS.gene90829:CDS | 40.0% |
| ! | TCCCAAAGATTCTCCCATTT+TGG | + | chr1.4:87800940-87800959 | MS.gene90829:CDS | 40.0% |
| !! | AGTTATTGATGGGGTTGGTA+AGG | + | chr1.4:87801148-87801167 | MS.gene90829:CDS | 40.0% |
| !! | ATACTTCTGCTGGTGGATTA+TGG | + | chr1.4:87801231-87801250 | MS.gene90829:CDS | 40.0% |
| !! | GTTATTGATGGGGTTGGTAA+GGG | + | chr1.4:87801149-87801168 | MS.gene90829:CDS | 40.0% |
| !! | TGATGATTAGTCTTGGAGCT+GGG | + | chr1.4:87801309-87801328 | MS.gene90829:CDS | 40.0% |
| !! | TTGATGATTAGTCTTGGAGC+TGG | + | chr1.4:87801308-87801327 | MS.gene90829:CDS | 40.0% |
| !!! | TCTAACTGTCTTTTTCGAGC+AGG | + | chr1.4:87800702-87800721 | MS.gene90829:CDS | 40.0% |
| AACCTGACCAGTTCCCAAAA+TGG | - | chr1.4:87800957-87800976 | None:intergenic | 45.0% | |
| ACCTGACCAGTTCCCAAAAT+GGG | - | chr1.4:87800956-87800975 | None:intergenic | 45.0% | |
| CTGTGCTCACAACAATTCCA+AGG | - | chr1.4:87800632-87800651 | None:intergenic | 45.0% | |
| GTGGTAGGGCAGTTATTGAT+GGG | + | chr1.4:87801138-87801157 | MS.gene90829:intron | 45.0% | |
| GTTGTGAGCACAGAAGATCT+TGG | + | chr1.4:87800639-87800658 | MS.gene90829:CDS | 45.0% | |
| TAGGATGGCACTTCATCGTT+GGG | + | chr1.4:87801205-87801224 | MS.gene90829:CDS | 45.0% | |
| TGGTAGGGCAGTTATTGATG+GGG | + | chr1.4:87801139-87801158 | MS.gene90829:intron | 45.0% | |
| TTGTGTTCATCCTGGTGGTA+GGG | + | chr1.4:87801124-87801143 | MS.gene90829:intron | 45.0% | |
| TTTGTGTTCATCCTGGTGGT+AGG | + | chr1.4:87801123-87801142 | MS.gene90829:intron | 45.0% | |
| ! | ACCGATTCCTGAACTAACCA+TGG | - | chr1.4:87800286-87800305 | None:intergenic | 45.0% |
| ! | CAGAAGATCTTGGCTCTCAT+TGG | + | chr1.4:87800649-87800668 | MS.gene90829:CDS | 45.0% |
| !! | GATTCTCCCATTTTGGGAAC+TGG | + | chr1.4:87800947-87800966 | MS.gene90829:CDS | 45.0% |
| !!! | AACTGTCTTTTTCGAGCAGG+TGG | + | chr1.4:87800705-87800724 | MS.gene90829:CDS | 45.0% |
| AGGATGGCACTTCATCGTTG+GGG | + | chr1.4:87801206-87801225 | MS.gene90829:CDS | 50.0% | |
| AGGGCAGTTATTGATGGGGT+TGG | + | chr1.4:87801143-87801162 | MS.gene90829:intron | 50.0% | |
| CGTTGGGGTAATACTTCTGC+TGG | + | chr1.4:87801221-87801240 | MS.gene90829:CDS | 50.0% | |
| CTAGGATGGCACTTCATCGT+TGG | + | chr1.4:87801204-87801223 | MS.gene90829:CDS | 50.0% | |
| GGTGGTAGGGCAGTTATTGA+TGG | + | chr1.4:87801137-87801156 | MS.gene90829:intron | 50.0% | |
| TCAATAACTGCCCTACCACC+AGG | - | chr1.4:87801137-87801156 | None:intergenic | 50.0% | |
| TGATCTTGAGCCAGCTAGGA+TGG | + | chr1.4:87801190-87801209 | MS.gene90829:CDS | 50.0% | |
| TGGGGTAATACTTCTGCTGG+TGG | + | chr1.4:87801224-87801243 | MS.gene90829:CDS | 50.0% | |
| ! | CTTGGCTCTCATTGGTACTG+TGG | + | chr1.4:87800657-87800676 | MS.gene90829:CDS | 50.0% |
| !! | TCCCATTTTGGGAACTGGTC+AGG | + | chr1.4:87800952-87800971 | MS.gene90829:CDS | 50.0% |
| ! | CGATGAAGTGCCATCCTAGC+TGG | - | chr1.4:87801203-87801222 | None:intergenic | 55.0% |
| ! | CTTGCTGTGAGTGAAGGTGC+TGG | - | chr1.4:87800486-87800505 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87800234 | 87801517 | 87800234 | ID=MS.gene90829 |
| chr1.4 | mRNA | 87800234 | 87801517 | 87800234 | ID=MS.gene90829.t1;Parent=MS.gene90829 |
| chr1.4 | exon | 87800234 | 87800973 | 87800234 | ID=MS.gene90829.t1.exon1;Parent=MS.gene90829.t1 |
| chr1.4 | CDS | 87800234 | 87800973 | 87800234 | ID=cds.MS.gene90829.t1;Parent=MS.gene90829.t1 |
| chr1.4 | exon | 87801145 | 87801517 | 87801145 | ID=MS.gene90829.t1.exon2;Parent=MS.gene90829.t1 |
| chr1.4 | CDS | 87801145 | 87801517 | 87801145 | ID=cds.MS.gene90829.t1;Parent=MS.gene90829.t1 |
| Gene Sequence |
| Protein sequence |
