AlfalfaGEDB | MS.gene91004

M. sativa cultivar XinJiangDaYe / MS.gene91004

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91004.t1	XP_024630522.1	82.1	84	15	0	63	146	282	365	9.30E-28	133.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91004.t1	A0A072TIG0	79.8	84	15	1	63	146	282	363	3.1e-25	124.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052519	MS.gene91004	0.814626	1.40E-51	-1.69E-46
MS.gene05365	MS.gene91004	0.801964	7.02E-49	-1.69E-46
MS.gene05415	MS.gene91004	0.802724	4.90E-49	-1.69E-46
MS.gene055818	MS.gene91004	0.804258	2.36E-49	-1.69E-46
MS.gene056498	MS.gene91004	0.82683	2.19E-54	-1.69E-46
MS.gene057060	MS.gene91004	0.81243	4.26E-51	-1.69E-46
MS.gene058037	MS.gene91004	0.806591	7.64E-50	-1.69E-46
MS.gene05954	MS.gene91004	0.824631	7.27E-54	-1.69E-46
MS.gene060521	MS.gene91004	0.805615	1.23E-49	-1.69E-46
MS.gene060572	MS.gene91004	0.827893	1.22E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91004.t1	MTR_0022s0280	79.762	84	15	1	63	146	282	363	7.73e-30	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATACAGGGAACTTATTAGA+TGG	0.336195	6.1:+38645859	MS.gene91004:intron
ACAAGAAGATGGACTGTTGG+AGG	0.548843	6.1:+38645745	MS.gene91004:CDS
ACTGTTGGAGGGTGGTGGAA+AGG	0.535616	6.1:+38645757	MS.gene91004:CDS
AGAAGATATAGCTGTGTCTT+TGG	0.346775	6.1:+38647491	MS.gene91004:CDS
AGCTATATCTTCTGTTTCGC+AGG	0.442402	6.1:-38647481	None:intergenic
AGGAGGGGAAGCTCGACATG+AGG	0.655531	6.1:+38647716	MS.gene91004:CDS
AGGTTGACAGTACAAGAAGA+TGG	0.569975	6.1:+38645734	MS.gene91004:CDS
AGTACAAGAAGATGGACTGT+TGG	0.575061	6.1:+38645742	MS.gene91004:CDS
ATACAGGGAACTTATTAGAT+GGG	0.553252	6.1:+38645860	MS.gene91004:intron
ATATTGATGAAAATGAAGGA+GGG	0.586798	6.1:+38647700	MS.gene91004:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCTGAAAAGAGACAT+AGG	+	chr6.1:38648232-38648251	MS.gene91004:intron	30.0%
AATACAGGGAACTTATTAGA+TGG	+	chr6.1:38645859-38645878	MS.gene91004:intron	30.0%
AATCTGAGAATAATTCTCCT+TGG	-	chr6.1:38646267-38646286	None:intergenic	30.0%
ACTTAGCAAGAAGAATACAT+TGG	-	chr6.1:38648057-38648076	None:intergenic	30.0%
ATACAGGGAACTTATTAGAT+GGG	+	chr6.1:38645860-38645879	MS.gene91004:intron	30.0%
CAAGAAGAATACATTGGATT+TGG	-	chr6.1:38648051-38648070	None:intergenic	30.0%
CAATACATTCTAATGCTAGT+AGG	-	chr6.1:38646994-38647013	None:intergenic	30.0%
CAATGAAGGGTTAAAATTTG+AGG	+	chr6.1:38646671-38646690	MS.gene91004:intron	30.0%
GATATTGATGAAAATGAAGG+AGG	+	chr6.1:38647699-38647718	MS.gene91004:CDS	30.0%
GCCAAATTTGCACTAAAATA+GGG	-	chr6.1:38646485-38646504	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	38645694	38648657	38645694	ID=MS.gene91004
chr6.1	mRNA	38645694	38648657	38645694	ID=MS.gene91004.t1;Parent=MS.gene91004
chr6.1	exon	38645694	38645790	38645694	ID=MS.gene91004.t1.exon1;Parent=MS.gene91004.t1
chr6.1	CDS	38645694	38645790	38645694	ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1
chr6.1	exon	38645866	38645960	38645866	ID=MS.gene91004.t1.exon2;Parent=MS.gene91004.t1
chr6.1	CDS	38645866	38645960	38645866	ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1
chr6.1	exon	38647423	38647572	38647423	ID=MS.gene91004.t1.exon3;Parent=MS.gene91004.t1
chr6.1	CDS	38647423	38647572	38647423	ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1
chr6.1	exon	38647681	38647737	38647681	ID=MS.gene91004.t1.exon4;Parent=MS.gene91004.t1
chr6.1	CDS	38647681	38647737	38647681	ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1
chr6.1	exon	38648616	38648657	38648616	ID=MS.gene91004.t1.exon5;Parent=MS.gene91004.t1
chr6.1	CDS	38648616	38648657	38648616	ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1

Gene Sequence

>MS.gene91004

ATGGATGACGCTGGTAGTAGTTGTGGCCAGTGGACAATAGAGGTTGACAGTACAAGAAGATGGACTGTTGGAGGGTGGTGGAAAGGAAAATTAAACTGTAAATTGGGCAGTTTGGTGCAGGGTCTGCTCATGCATGCGAACTCTGGCTCAATGATGTGTTAATGAAATACAGGGAACTTATTAGATGGGTTGCGCTCACAAGTTGACAGGTTTGAAAATGAAAATATGTTCATTGCACCAAACGAGTGTGCGGGTTTGCCTAGTATCGTTTGGGATTGGATTTGAACCACAAAATATACTGAACCAATTATTTTGGTTTGGGTTGGATTTTCAGGATGATTACGAGAGACCCTAACCCGTGAACACCCTTTATGAATTGATTCAGAATGAAGTGGATGAATTAGTATTTTGTTGAATATTCTTTTAATTTGGGTATTTAACTTGTGGTTTATGTAGAGGATTATTGTCACAAAAAGAAGTGATTATATTGGTTTAAGATTTTGAACTTGGAATGCTAAACTTTGAACTTGTTGATAATCCATTAGATTAAGATGTTAAACTTCTTCCTTGCCAAGGAGAATTATTCTCAGATTCAAGCTGATACGAGAGATTAATAGAAAACTCGATAATCTGACTTTAACTACACCGGACATTTCTTTTGTTATTAGTATGGTGGGTCTATTTCTCCTAGTTTTTGTCATTTGATTTCCATTGTCAAAGTTTTAAGATTTATCAAAGGATAACCAAGAGTAGGATTGGTGTTTGAGAAATTTAGGCACAATATTGTTCCCTATTTTAGTGCAAATTTGGCAGTATCTTTTTGTAATAGAGGATCCACCTCAGGATGATGTTTTCTATGGACGAAGTCCATGTTTCATGGATAGGTAAGAAACAATATTTGGTTTTAAGGTCAAGTGATGAACATAATATTAGGCTATGGCTCTCGCTACATGTGAACTCATGAGGCTGAAACAATGCAATGAAGGGTTAAAATTTGAGGTTAAGATTGTGAGATTAATCTGTGATATGCAGGTGACTTTCTCTATAGCATCTAATCTAGTATTTCATGATTGAACCAAGCATATAGAGTTTGACTGTCATTTTATTTGTGAGAAAGTTACTTCTGAAGTTATGCAATAACCCCTTTGCAATTCAAAATATCATTTAACAGATTTGTTTGCCAGAGCTCTTTGGGGACCAAGAATTTCTGATATCTGTTACACGATGGATGCTTGTGATTTCTGCATTCGAACTTGAGGGCACAAGTTAGCTTAGAAAATAGTTAATGTTCAATTTTCCTACTAGCATTAGAATGTATTGTATCATATGACTGATTGTTTTCCTAGATAACTTGTATCTTAGGAATAATGCTTGTTTTTGGTTTCTCGTCTGGTAAATTGTATCCATCCTTTATATAAGTATCATTCTGTTCATATTCAGAAATTCCTCTTCACATTTCTTTCAAAGTGAGGATAAATTGTGGATTACATGCCTGTTGATAAAAATAAAAAAAATAAAAAAAATATTTGTGTTCATATATTTTATCACACTCGACCATTGATTTTTCAGTTACATTATCCCCTAAGATGCATCCTCACTATACCAGAGCCAATTTCATGTAGAAATTAGTCTCCAAAGGGAGTTAGTAAATTGGGAGTTGGGACGTATACTTTTGGCGACAAAAGTAATACAACATGTTTGAGCAATAAATGAATTTGAAACATTGCAGGGTGAGCCTAATGAAAGTGTTGCTGCTGCTGCTGATGATGATGATGGAAAGGATGGTCCCTGCGAAACAGAAGATATAGCTGTGTCTTTGGAGCATGTTGAGGATCTCGTTGAGGAGCATGGAAAAGGGGTTGATCAGAGTATTGCTGAGGTTAGATGTTTAAAAGTCTTTGTTTATTTTACCTTTTTCAGGTGAAATAGAAAAACTAGAAATAGACTTGTAAACTCTGTTTTGATTGTGATTGTTTTGTTTGCACAGTGTTCTGCCAAGGAAGGCGATATTGATGAAAATGAAGGAGGGGAAGCTCGACATGAGGTGAGACATTATTATCCTTCTCAAATTAAAAATGCTGAAAAGAAACATAGGGCCCGTTTGGATTAGCTTATTTTTGAGCTTATGAAAAGTTGTTTATGCAAATAAATAAGCTTTTATGTTAATTCATAAGTTTTCACTAACAAAAATTATATCTTCATGAGCTGTTTTTTCATAAACTATATTGAAAAGCTTATGAATAATACATTAAAGCTTATTTATTTGCATAAGTTCAAAAAGTTCTTTCTTTGATGTTGTAAGTTGATGACTGCATTTTTTAAGAAAAAAATTATTCCTTGTATGGCAATCCATGCCAAATCCAATGTATTCTTCTTGCTAAGTCCTAAAGCCATCAATAAACTAGTACCTTAAAATAACTAAAGCTCCCAATTGTTTCAAGATGCAGGGTGAGACTAAGGAGAAAGTTGTTGAGACATGATGATGAACCAGTTGAGTAGCATGATATGAGGTGAGACGTTATTATCTTTCTCAAATTAAAAATGCTGAAAAGAGACATAGGCCCTGTTTGGATTAGCTTATGAAAAGTTGCTTATGCAAATAAATAAACTTTTATGTTAATTCTTAAGTTTTCACTAACAAAAATTGTATATTCATAAGTTGTTTTTTCATAAACTACCTTGATAAGCTTGTGAATAATACATAAAAACTTATTTATTTGCATAAGCTTAAAAATAAGTCAATCCAAATGGGTGCATACTTGCTTTACTTCGGTGTTGATCTTTTCAATAAAAAGTTGCTGCTTTGATGTTGTTAGTTGATGACTGCAATCCATACCAAATCCAATGTCTTCGTCTTGCCAAGTCCTAAAACCCTCAATAAACTAATACCTTAAAATAACTTAAACTCCCTGTTGTTTCAAGATGCAGGGTGAGACTAAGGAGAAAGTTGTCTTTGAAGCATGA

Protein sequence

>MS.gene91004.t1

MDDAGSSCGQWTIEVDSTRRWTVGGWWKGKLNWNLLDGLRSQVDRFENENMFIAPNECAGLPSIGEPNESVAAAADDDDGKDGPCETEDIAVSLEHVEDLVEEHGKGVDQSIAECSAKEGDIDENEGGEARHEMQGETKEKVVFEA