Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91004.t1 | XP_024630522.1 | 82.1 | 84 | 15 | 0 | 63 | 146 | 282 | 365 | 9.30E-28 | 133.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91004.t1 | A0A072TIG0 | 79.8 | 84 | 15 | 1 | 63 | 146 | 282 | 363 | 3.1e-25 | 124.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052519 | MS.gene91004 | 0.814626 | 1.40E-51 | -1.69E-46 |
| MS.gene05365 | MS.gene91004 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene91004 | 0.802724 | 4.90E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene91004 | 0.804258 | 2.36E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene91004 | 0.82683 | 2.19E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene91004 | 0.81243 | 4.26E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene91004 | 0.806591 | 7.64E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene91004 | 0.824631 | 7.27E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene91004 | 0.805615 | 1.23E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene91004 | 0.827893 | 1.22E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene91004 | -0.819585 | 1.08E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene91004 | -0.806453 | 8.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91004.t1 | MTR_0022s0280 | 79.762 | 84 | 15 | 1 | 63 | 146 | 282 | 363 | 7.73e-30 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACAGGGAACTTATTAGA+TGG | 0.336195 | 6.1:+38645859 | MS.gene91004:intron |
| AGAAGATATAGCTGTGTCTT+TGG | 0.346775 | 6.1:+38647491 | MS.gene91004:CDS |
| GGCAAACCCGCACACTCGTT+TGG | 0.425629 | 6.1:-38645931 | None:intergenic |
| CTCGTTGAGGAGCATGGAAA+AGG | 0.435978 | 6.1:+38647528 | MS.gene91004:CDS |
| ATCCAATCCCAAACGATACT+AGG | 0.439308 | 6.1:-38645952 | None:intergenic |
| AGCTATATCTTCTGTTTCGC+AGG | 0.442402 | 6.1:-38647481 | None:intergenic |
| TTCATCAATATCGCCTTCCT+TGG | 0.475289 | 6.1:-38647688 | None:intergenic |
| GCAGCAGCAACACTTTCATT+AGG | 0.478132 | 6.1:-38647429 | None:intergenic |
| GATGGACTGTTGGAGGGTGG+TGG | 0.478628 | 6.1:+38645752 | MS.gene91004:CDS |
| CAAGATGCAGGGTGAGACTA+AGG | 0.486968 | 6.1:+38648612 | MS.gene91004:intron |
| GGTTGCGCTCACAAGTTGAC+AGG | 0.507143 | 6.1:+38645881 | MS.gene91004:CDS |
| TCGTTGAGGAGCATGGAAAA+GGG | 0.512001 | 6.1:+38647529 | MS.gene91004:CDS |
| GGCGATATTGATGAAAATGA+AGG | 0.514144 | 6.1:+38647696 | MS.gene91004:CDS |
| CCCTGTTGTTTCAAGATGCA+GGG | 0.523735 | 6.1:+38648601 | MS.gene91004:intron |
| ACTGTTGGAGGGTGGTGGAA+AGG | 0.535616 | 6.1:+38645757 | MS.gene91004:CDS |
| ACAAGAAGATGGACTGTTGG+AGG | 0.548843 | 6.1:+38645745 | MS.gene91004:CDS |
| GCTGCTGCTGATGATGATGA+TGG | 0.551790 | 6.1:+38647447 | MS.gene91004:CDS |
| ATACAGGGAACTTATTAGAT+GGG | 0.553252 | 6.1:+38645860 | MS.gene91004:intron |
| GCACAGTGTTCTGCCAAGGA+AGG | 0.561855 | 6.1:+38647675 | MS.gene91004:intron |
| AGGTTGACAGTACAAGAAGA+TGG | 0.569975 | 6.1:+38645734 | MS.gene91004:CDS |
| GATATTGATGAAAATGAAGG+AGG | 0.572704 | 6.1:+38647699 | MS.gene91004:CDS |
| TGCTGATGATGATGATGGAA+AGG | 0.574568 | 6.1:+38647452 | MS.gene91004:CDS |
| AGTACAAGAAGATGGACTGT+TGG | 0.575061 | 6.1:+38645742 | MS.gene91004:CDS |
| CATTGCACCAAACGAGTGTG+CGG | 0.577507 | 6.1:+38645924 | MS.gene91004:CDS |
| TGTCAACCTCTATTGTCCAC+TGG | 0.578702 | 6.1:-38645720 | None:intergenic |
| TTGTGGCCAGTGGACAATAG+AGG | 0.580968 | 6.1:+38645714 | MS.gene91004:CDS |
| GTTTGCACAGTGTTCTGCCA+AGG | 0.582236 | 6.1:+38647671 | MS.gene91004:intron |
| ATTGCACCAAACGAGTGTGC+GGG | 0.586047 | 6.1:+38645925 | MS.gene91004:CDS |
| ATATTGATGAAAATGAAGGA+GGG | 0.586798 | 6.1:+38647700 | MS.gene91004:CDS |
| TATTGATGAAAATGAAGGAG+GGG | 0.596657 | 6.1:+38647701 | MS.gene91004:CDS |
| GAGGATCTCGTTGAGGAGCA+TGG | 0.603692 | 6.1:+38647522 | MS.gene91004:CDS |
| GCTATATCTTCTGTTTCGCA+GGG | 0.608246 | 6.1:-38647480 | None:intergenic |
| CTGGTAGTAGTTGTGGCCAG+TGG | 0.611585 | 6.1:+38645704 | MS.gene91004:CDS |
| TGTGTCTTTGGAGCATGTTG+AGG | 0.612875 | 6.1:+38647503 | MS.gene91004:CDS |
| GATGACGCTGGTAGTAGTTG+TGG | 0.622616 | 6.1:+38645697 | MS.gene91004:CDS |
| CGTTGAGGAGCATGGAAAAG+GGG | 0.623251 | 6.1:+38647530 | MS.gene91004:CDS |
| CAAGAAGATGGACTGTTGGA+GGG | 0.632627 | 6.1:+38645746 | MS.gene91004:CDS |
| GATGATGATGATGGAAAGGA+TGG | 0.634811 | 6.1:+38647456 | MS.gene91004:CDS |
| AGGAGGGGAAGCTCGACATG+AGG | 0.655531 | 6.1:+38647716 | MS.gene91004:CDS |
| GGTTGATCAGAGTATTGCTG+AGG | 0.664281 | 6.1:+38647551 | MS.gene91004:CDS |
| GCATGTTGAGGATCTCGTTG+AGG | 0.670045 | 6.1:+38647515 | MS.gene91004:CDS |
| GAAGATGGACTGTTGGAGGG+TGG | 0.689242 | 6.1:+38645749 | MS.gene91004:CDS |
| CACCAGAAGATGGATGACGC+TGG | 0.703723 | 6.1:+38645685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTTATCAAC+AGG | - | chr6.1:38647188-38647207 | None:intergenic | 10.0% |
| !!! | AAAGTTTTAAGATTTATCAA+AGG | + | chr6.1:38646410-38646429 | MS.gene91004:intron | 15.0% |
| !!! | GTTGAATATTCTTTTAATTT+GGG | + | chr6.1:38646104-38646123 | MS.gene91004:intron | 15.0% |
| !!! | TGTTGAATATTCTTTTAATT+TGG | + | chr6.1:38646103-38646122 | MS.gene91004:intron | 15.0% |
| !! | AAAAATAAGTCAATCCAAAT+GGG | + | chr6.1:38648423-38648442 | MS.gene91004:intron | 20.0% |
| !! | AAATCTTAAAACTTTGACAA+TGG | - | chr6.1:38646405-38646424 | None:intergenic | 20.0% |
| !! | AATGATACTTATATAAAGGA+TGG | - | chr6.1:38647100-38647119 | None:intergenic | 20.0% |
| !! | ACAAAAAGAAGTGATTATAT+TGG | + | chr6.1:38646162-38646181 | MS.gene91004:intron | 20.0% |
| !! | ACAGAATGATACTTATATAA+AGG | - | chr6.1:38647104-38647123 | None:intergenic | 20.0% |
| !! | AGGAAAATTAAACTGTAAAT+TGG | + | chr6.1:38645777-38645796 | MS.gene91004:intron | 20.0% |
| !! | AGTTTAACATCTTAATCTAA+TGG | - | chr6.1:38646235-38646254 | None:intergenic | 20.0% |
| !! | ATTCTGAATCAATTCATAAA+GGG | - | chr6.1:38646062-38646081 | None:intergenic | 20.0% |
| !! | GAAAAAAATTATTCCTTGTA+TGG | + | chr6.1:38648016-38648035 | MS.gene91004:intron | 20.0% |
| !! | GGAAAATTAAACTGTAAATT+GGG | + | chr6.1:38645778-38645797 | MS.gene91004:intron | 20.0% |
| !! | TAAAAATAAGTCAATCCAAA+TGG | + | chr6.1:38648422-38648441 | MS.gene91004:intron | 20.0% |
| !! | TAATGTAACTGAAAAATCAA+TGG | - | chr6.1:38647251-38647270 | None:intergenic | 20.0% |
| !!! | AATGATATTTTGAATTGCAA+AGG | - | chr6.1:38646839-38646858 | None:intergenic | 20.0% |
| !!! | AGAAACAATATTTGGTTTTA+AGG | + | chr6.1:38646581-38646600 | MS.gene91004:intron | 20.0% |
| !!! | ATATACTGAACCAATTATTT+TGG | + | chr6.1:38645987-38646006 | MS.gene91004:intron | 20.0% |
| !!! | ATGATATTTTGAATTGCAAA+GGG | - | chr6.1:38646838-38646857 | None:intergenic | 20.0% |
| !!! | CATTTCTTTTGTTATTAGTA+TGG | + | chr6.1:38646344-38646363 | MS.gene91004:intron | 20.0% |
| !!! | TTAAGGTATTAGTTTATTGA+GGG | - | chr6.1:38648568-38648587 | None:intergenic | 20.0% |
| !!! | TTGTTTATTTTACCTTTTTC+AGG | + | chr6.1:38647592-38647611 | MS.gene91004:intron | 20.0% |
| !!! | TTTAAGGTATTAGTTTATTG+AGG | - | chr6.1:38648569-38648588 | None:intergenic | 20.0% |
| ! | AAAAATAAGCTAATCCAAAC+GGG | - | chr6.1:38647793-38647812 | None:intergenic | 25.0% |
| ! | AAAATGCTGAAAAGAAACAT+AGG | + | chr6.1:38647766-38647785 | MS.gene91004:intron | 25.0% |
| ! | AAATGCTGAAAAGAAACATA+GGG | + | chr6.1:38647767-38647786 | MS.gene91004:intron | 25.0% |
| ! | ATATTGATGAAAATGAAGGA+GGG | + | chr6.1:38647700-38647719 | MS.gene91004:CDS | 25.0% |
| ! | ATGAACATAATATTAGGCTA+TGG | + | chr6.1:38646611-38646630 | MS.gene91004:intron | 25.0% |
| ! | ATGATGTGTTAATGAAATAC+AGG | + | chr6.1:38645844-38645863 | MS.gene91004:intron | 25.0% |
| ! | CAAAAATAAGCTAATCCAAA+CGG | - | chr6.1:38647794-38647813 | None:intergenic | 25.0% |
| ! | CAAGTGATGAACATAATATT+AGG | + | chr6.1:38646605-38646624 | MS.gene91004:intron | 25.0% |
| ! | CATTCTGAATCAATTCATAA+AGG | - | chr6.1:38646063-38646082 | None:intergenic | 25.0% |
| ! | CTAATAACAAAAGAAATGTC+CGG | - | chr6.1:38646342-38646361 | None:intergenic | 25.0% |
| ! | GAAATCAAATGACAAAAACT+AGG | - | chr6.1:38646383-38646402 | None:intergenic | 25.0% |
| ! | GACTAATTTCTACATGAAAT+TGG | - | chr6.1:38647305-38647324 | None:intergenic | 25.0% |
| ! | GATAGGTAAGAAACAATATT+TGG | + | chr6.1:38646573-38646592 | MS.gene91004:intron | 25.0% |
| ! | TAACAGATATCAGAAATTCT+TGG | - | chr6.1:38646894-38646913 | None:intergenic | 25.0% |
| ! | TATTATTCACAAGCTTATCA+AGG | - | chr6.1:38648374-38648393 | None:intergenic | 25.0% |
| ! | TGATGTGTTAATGAAATACA+GGG | + | chr6.1:38645845-38645864 | MS.gene91004:intron | 25.0% |
| !! | AAATGAATTTGAAACATTGC+AGG | + | chr6.1:38647401-38647420 | MS.gene91004:intron | 25.0% |
| !! | AATGAATTTGAAACATTGCA+GGG | + | chr6.1:38647402-38647421 | MS.gene91004:intron | 25.0% |
| !! | TTAAGGTACTAGTTTATTGA+TGG | - | chr6.1:38648087-38648106 | None:intergenic | 25.0% |
| !! | TTTTCTATTTCACCTGAAAA+AGG | - | chr6.1:38647607-38647626 | None:intergenic | 25.0% |
| !!! | AATTGGTTCAGTATATTTTG+TGG | - | chr6.1:38645983-38646002 | None:intergenic | 25.0% |
| !!! | AGGGAGTTTAAGTTATTTTA+AGG | - | chr6.1:38648585-38648604 | None:intergenic | 25.0% |
| !!! | ATTAGTTTATTGAGGGTTTT+AGG | - | chr6.1:38648561-38648580 | None:intergenic | 25.0% |
| !!! | TAATTTGGGTATTTAACTTG+TGG | + | chr6.1:38646118-38646137 | MS.gene91004:intron | 25.0% |
| !!! | TCAGCATTTTTAATTTGAGA+AGG | - | chr6.1:38647756-38647775 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTATTAGTATGGT+GGG | + | chr6.1:38646348-38646367 | MS.gene91004:intron | 25.0% |
| !!! | TGAACCAATTATTTTGGTTT+GGG | + | chr6.1:38645993-38646012 | MS.gene91004:intron | 25.0% |
| !!! | TGATATTTTGAATTGCAAAG+GGG | - | chr6.1:38646837-38646856 | None:intergenic | 25.0% |
| !!! | TTAGGAATAATGCTTGTTTT+TGG | + | chr6.1:38647052-38647071 | MS.gene91004:intron | 25.0% |
| !!! | TTCTTTTGTTATTAGTATGG+TGG | + | chr6.1:38646347-38646366 | MS.gene91004:intron | 25.0% |
| !!! | TTGGTTTAAGATTTTGAACT+TGG | + | chr6.1:38646181-38646200 | MS.gene91004:intron | 25.0% |
| AAAATGCTGAAAAGAGACAT+AGG | + | chr6.1:38648232-38648251 | MS.gene91004:intron | 30.0% | |
| AATACAGGGAACTTATTAGA+TGG | + | chr6.1:38645859-38645878 | MS.gene91004:intron | 30.0% | |
| AATCTGAGAATAATTCTCCT+TGG | - | chr6.1:38646267-38646286 | None:intergenic | 30.0% | |
| ACTTAGCAAGAAGAATACAT+TGG | - | chr6.1:38648057-38648076 | None:intergenic | 30.0% | |
| ATACAGGGAACTTATTAGAT+GGG | + | chr6.1:38645860-38645879 | MS.gene91004:intron | 30.0% | |
| CAAGAAGAATACATTGGATT+TGG | - | chr6.1:38648051-38648070 | None:intergenic | 30.0% | |
| CAATACATTCTAATGCTAGT+AGG | - | chr6.1:38646994-38647013 | None:intergenic | 30.0% | |
| CAATGAAGGGTTAAAATTTG+AGG | + | chr6.1:38646671-38646690 | MS.gene91004:intron | 30.0% | |
| GATATTGATGAAAATGAAGG+AGG | + | chr6.1:38647699-38647718 | MS.gene91004:CDS | 30.0% | |
| GCCAAATTTGCACTAAAATA+GGG | - | chr6.1:38646485-38646504 | None:intergenic | 30.0% | |
| TAATCTGACTTTAACTACAC+CGG | + | chr6.1:38646320-38646339 | MS.gene91004:intron | 30.0% | |
| TATTGATGAAAATGAAGGAG+GGG | + | chr6.1:38647701-38647720 | MS.gene91004:CDS | 30.0% | |
| TCCTAAGATACAAGTTATCT+AGG | - | chr6.1:38647038-38647057 | None:intergenic | 30.0% | |
| TGCCAAATTTGCACTAAAAT+AGG | - | chr6.1:38646486-38646505 | None:intergenic | 30.0% | |
| TTCAAAGTGAGGATAAATTG+TGG | + | chr6.1:38647154-38647173 | MS.gene91004:intron | 30.0% | |
| TTCACATTTCTTTCAAAGTG+AGG | + | chr6.1:38647143-38647162 | MS.gene91004:intron | 30.0% | |
| TTCATAAGCTAATCCAAACA+GGG | - | chr6.1:38648258-38648277 | None:intergenic | 30.0% | |
| TTTCATAAGCTAATCCAAAC+AGG | - | chr6.1:38648259-38648278 | None:intergenic | 30.0% | |
| ! | ACTAGTTTATTGATGGCTTT+AGG | - | chr6.1:38648080-38648099 | None:intergenic | 30.0% |
| ! | ACTTTGAAAGAAATGTGAAG+AGG | - | chr6.1:38647142-38647161 | None:intergenic | 30.0% |
| ! | ATGTAGAAATTAGTCTCCAA+AGG | + | chr6.1:38647310-38647329 | MS.gene91004:intron | 30.0% |
| ! | GATTGGTGTTTGAGAAATTT+AGG | + | chr6.1:38646447-38646466 | MS.gene91004:intron | 30.0% |
| ! | GCAGTATCTTTTTGTAATAG+AGG | + | chr6.1:38646503-38646522 | MS.gene91004:intron | 30.0% |
| ! | TCCTAGATAACTTGTATCTT+AGG | + | chr6.1:38647034-38647053 | MS.gene91004:intron | 30.0% |
| ! | TGAATTGATTCAGAATGAAG+TGG | + | chr6.1:38646066-38646085 | MS.gene91004:intron | 30.0% |
| ! | TGTAGAAATTAGTCTCCAAA+GGG | + | chr6.1:38647311-38647330 | MS.gene91004:intron | 30.0% |
| !! | TGGGAGCTTTAGTTATTTTA+AGG | - | chr6.1:38648104-38648123 | None:intergenic | 30.0% |
| !! | TTAACTTGTGGTTTATGTAG+AGG | + | chr6.1:38646130-38646149 | MS.gene91004:intron | 30.0% |
| !!! | CTGAACCAATTATTTTGGTT+TGG | + | chr6.1:38645992-38646011 | MS.gene91004:intron | 30.0% |
| !!! | TCCCTATTTTAGTGCAAATT+TGG | + | chr6.1:38646481-38646500 | MS.gene91004:intron | 30.0% |
| AAACTGTAAATTGGGCAGTT+TGG | + | chr6.1:38645786-38645805 | MS.gene91004:intron | 35.0% | |
| ACAGTCAAACTCTATATGCT+TGG | - | chr6.1:38646772-38646791 | None:intergenic | 35.0% | |
| AGAAGATATAGCTGTGTCTT+TGG | + | chr6.1:38647491-38647510 | MS.gene91004:CDS | 35.0% | |
| AGAATACATTGGATTTGGCA+TGG | - | chr6.1:38648046-38648065 | None:intergenic | 35.0% | |
| ATCAAAGGATAACCAAGAGT+AGG | + | chr6.1:38646425-38646444 | MS.gene91004:intron | 35.0% | |
| ATTTCTGCATTCGAACTTGA+GGG | + | chr6.1:38646931-38646950 | MS.gene91004:intron | 35.0% | |
| CCAAAGGGAGTTAGTAAATT+GGG | + | chr6.1:38647326-38647345 | MS.gene91004:intron | 35.0% | |
| CCAACCCAAACCAAAATAAT+TGG | - | chr6.1:38646000-38646019 | None:intergenic | 35.0% | |
| GAGATTAATCTGTGATATGC+AGG | + | chr6.1:38646704-38646723 | MS.gene91004:intron | 35.0% | |
| GAGTTAGTAAATTGGGAGTT+GGG | + | chr6.1:38647333-38647352 | MS.gene91004:intron | 35.0% | |
| GGCGATATTGATGAAAATGA+AGG | + | chr6.1:38647696-38647715 | MS.gene91004:CDS | 35.0% | |
| TATAGTGAGGATGCATCTTA+GGG | - | chr6.1:38647276-38647295 | None:intergenic | 35.0% | |
| TCCAAAGGGAGTTAGTAAAT+TGG | + | chr6.1:38647325-38647344 | MS.gene91004:intron | 35.0% | |
| TCTTACCTATCCATGAAACA+TGG | - | chr6.1:38646564-38646583 | None:intergenic | 35.0% | |
| TTCTGATATCTGTTACACGA+TGG | + | chr6.1:38646899-38646918 | MS.gene91004:intron | 35.0% | |
| ! | TTTCTACATGAAATTGGCTC+TGG | - | chr6.1:38647299-38647318 | None:intergenic | 35.0% |
| !! | AATTCATAAAGGGTGTTCAC+GGG | - | chr6.1:38646052-38646071 | None:intergenic | 35.0% |
| !! | CAATTCATAAAGGGTGTTCA+CGG | - | chr6.1:38646053-38646072 | None:intergenic | 35.0% |
| !!! | CCAATTATTTTGGTTTGGGT+TGG | + | chr6.1:38645997-38646016 | MS.gene91004:intron | 35.0% |
| !!! | TTATTGAGGGTTTTAGGACT+TGG | - | chr6.1:38648555-38648574 | None:intergenic | 35.0% |
| AAAGCAAGTATGCACCCATT+TGG | - | chr6.1:38648440-38648459 | None:intergenic | 40.0% | |
| ACCCTGCATCTTGAAACAAT+TGG | - | chr6.1:38648124-38648143 | None:intergenic | 40.0% | |
| AGCTATATCTTCTGTTTCGC+AGG | - | chr6.1:38647484-38647503 | None:intergenic | 40.0% | |
| AGGATAACCAAGAGTAGGAT+TGG | + | chr6.1:38646430-38646449 | MS.gene91004:intron | 40.0% | |
| AGGCTGAAACAATGCAATGA+AGG | + | chr6.1:38646657-38646676 | MS.gene91004:intron | 40.0% | |
| AGGTTGACAGTACAAGAAGA+TGG | + | chr6.1:38645734-38645753 | MS.gene91004:CDS | 40.0% | |
| ATAGTGAGGATGCATCTTAG+GGG | - | chr6.1:38647275-38647294 | None:intergenic | 40.0% | |
| ATCCAATCCCAAACGATACT+AGG | - | chr6.1:38645955-38645974 | None:intergenic | 40.0% | |
| ATTTGTTTGCCAGAGCTCTT+TGG | + | chr6.1:38646865-38646884 | MS.gene91004:intron | 40.0% | |
| CAAGACGAAGACATTGGATT+TGG | - | chr6.1:38648532-38648551 | None:intergenic | 40.0% | |
| CAGTTGAGTAGCATGATATG+AGG | + | chr6.1:38648182-38648201 | MS.gene91004:intron | 40.0% | |
| CCATAGAAAACATCATCCTG+AGG | - | chr6.1:38646534-38646553 | None:intergenic | 40.0% | |
| CCCAATTGTTTCAAGATGCA+GGG | + | chr6.1:38648120-38648139 | MS.gene91004:intron | 40.0% | |
| CCCAATTTACTAACTCCCTT+TGG | - | chr6.1:38647329-38647348 | None:intergenic | 40.0% | |
| CCCTGCATCTTGAAACAATT+GGG | - | chr6.1:38648123-38648142 | None:intergenic | 40.0% | |
| CTCATATCATGCTACTCAAC+TGG | - | chr6.1:38648184-38648203 | None:intergenic | 40.0% | |
| GAAGTCCATGTTTCATGGAT+AGG | + | chr6.1:38646556-38646575 | MS.gene91004:intron | 40.0% | |
| GAGAATAATTCTCCTTGGCA+AGG | - | chr6.1:38646262-38646281 | None:intergenic | 40.0% | |
| GATTTCTGCATTCGAACTTG+AGG | + | chr6.1:38646930-38646949 | MS.gene91004:intron | 40.0% | |
| GCTATATCTTCTGTTTCGCA+GGG | - | chr6.1:38647483-38647502 | None:intergenic | 40.0% | |
| GGAGTTAGTAAATTGGGAGT+TGG | + | chr6.1:38647332-38647351 | MS.gene91004:intron | 40.0% | |
| GGCTGAAACAATGCAATGAA+GGG | + | chr6.1:38646658-38646677 | MS.gene91004:intron | 40.0% | |
| GGTGCATACTTGCTTTACTT+CGG | + | chr6.1:38648444-38648463 | MS.gene91004:intron | 40.0% | |
| GTATAGTGAGGATGCATCTT+AGG | - | chr6.1:38647277-38647296 | None:intergenic | 40.0% | |
| GTTAAACTTCTTCCTTGCCA+AGG | + | chr6.1:38646247-38646266 | MS.gene91004:intron | 40.0% | |
| TAGAAAACATCATCCTGAGG+TGG | - | chr6.1:38646531-38646550 | None:intergenic | 40.0% | |
| TCAAACACCAATCCTACTCT+TGG | - | chr6.1:38646440-38646459 | None:intergenic | 40.0% | |
| TCCCAATTGTTTCAAGATGC+AGG | + | chr6.1:38648119-38648138 | MS.gene91004:intron | 40.0% | |
| TTCATCAATATCGCCTTCCT+TGG | - | chr6.1:38647691-38647710 | None:intergenic | 40.0% | |
| TTTGTTTGCCAGAGCTCTTT+GGG | + | chr6.1:38646866-38646885 | MS.gene91004:intron | 40.0% | |
| ! | CCTCAGGATGATGTTTTCTA+TGG | + | chr6.1:38646531-38646550 | MS.gene91004:intron | 40.0% |
| ! | CGAAGACATTGGATTTGGTA+TGG | - | chr6.1:38648527-38648546 | None:intergenic | 40.0% |
| !! | AAATTGGCTCTGGTATAGTG+AGG | - | chr6.1:38647289-38647308 | None:intergenic | 40.0% |
| !! | AGTACAAGAAGATGGACTGT+TGG | + | chr6.1:38645742-38645761 | MS.gene91004:CDS | 40.0% |
| !! | GATGATGATGATGGAAAGGA+TGG | + | chr6.1:38647456-38647475 | MS.gene91004:CDS | 40.0% |
| !! | TGCTGATGATGATGATGGAA+AGG | + | chr6.1:38647452-38647471 | MS.gene91004:CDS | 40.0% |
| !!! | CTTGTTTTTGGTTTCTCGTC+TGG | + | chr6.1:38647064-38647083 | MS.gene91004:intron | 40.0% |
| !!! | TTGGTTTGGGTTGGATTTTC+AGG | + | chr6.1:38646006-38646025 | MS.gene91004:intron | 40.0% |
| AAAGAAACATAGGGCCCGTT+TGG | + | chr6.1:38647776-38647795 | MS.gene91004:intron | 45.0% | |
| AAAGAGACATAGGCCCTGTT+TGG | + | chr6.1:38648242-38648261 | MS.gene91004:intron | 45.0% | |
| ACCCTGCATCTTGAAACAAC+AGG | - | chr6.1:38648605-38648624 | None:intergenic | 45.0% | |
| ACTTGGCAAGACGAAGACAT+TGG | - | chr6.1:38648538-38648557 | None:intergenic | 45.0% | |
| CCCTGCATCTTGAAACAACA+GGG | - | chr6.1:38648604-38648623 | None:intergenic | 45.0% | |
| GCAGCAGCAACACTTTCATT+AGG | - | chr6.1:38647432-38647451 | None:intergenic | 45.0% | |
| GGGTTTGCCTAGTATCGTTT+GGG | + | chr6.1:38645945-38645964 | MS.gene91004:intron | 45.0% | |
| TCGCTACATGTGAACTCATG+AGG | + | chr6.1:38646637-38646656 | MS.gene91004:intron | 45.0% | |
| TGGACGAAGTCCATGTTTCA+TGG | + | chr6.1:38646551-38646570 | MS.gene91004:intron | 45.0% | |
| TGTAATAGAGGATCCACCTC+AGG | + | chr6.1:38646515-38646534 | MS.gene91004:intron | 45.0% | |
| TGTCAACCTCTATTGTCCAC+TGG | - | chr6.1:38645723-38645742 | None:intergenic | 45.0% | |
| TTGTTTGCCAGAGCTCTTTG+GGG | + | chr6.1:38646867-38646886 | MS.gene91004:intron | 45.0% | |
| ! | GGAGTTGGGACGTATACTTT+TGG | + | chr6.1:38647347-38647366 | MS.gene91004:intron | 45.0% |
| ! | TCGTTGAGGAGCATGGAAAA+GGG | + | chr6.1:38647529-38647548 | MS.gene91004:CDS | 45.0% |
| ! | TGCCTAGTATCGTTTGGGAT+TGG | + | chr6.1:38645950-38645969 | MS.gene91004:intron | 45.0% |
| ! | TTGGCATGGATTGCCATACA+AGG | - | chr6.1:38648032-38648051 | None:intergenic | 45.0% |
| !! | AAATTGGGCAGTTTGGTGCA+GGG | + | chr6.1:38645793-38645812 | MS.gene91004:intron | 45.0% |
| !! | ACAAGAAGATGGACTGTTGG+AGG | + | chr6.1:38645745-38645764 | MS.gene91004:CDS | 45.0% |
| !! | ATAAAGGGTGTTCACGGGTT+AGG | - | chr6.1:38646047-38646066 | None:intergenic | 45.0% |
| !! | CAAGAAGATGGACTGTTGGA+GGG | + | chr6.1:38645746-38645765 | MS.gene91004:CDS | 45.0% |
| !! | CCCTGTTGTTTCAAGATGCA+GGG | + | chr6.1:38648601-38648620 | MS.gene91004:intron | 45.0% |
| !! | GGTTGATCAGAGTATTGCTG+AGG | + | chr6.1:38647551-38647570 | MS.gene91004:CDS | 45.0% |
| !! | TAAAGGGTGTTCACGGGTTA+GGG | - | chr6.1:38646046-38646065 | None:intergenic | 45.0% |
| !! | TAAATTGGGCAGTTTGGTGC+AGG | + | chr6.1:38645792-38645811 | MS.gene91004:intron | 45.0% |
| !! | TCCCTGTTGTTTCAAGATGC+AGG | + | chr6.1:38648600-38648619 | MS.gene91004:intron | 45.0% |
| !! | TGTGTCTTTGGAGCATGTTG+AGG | + | chr6.1:38647503-38647522 | MS.gene91004:CDS | 45.0% |
| ATTGCACCAAACGAGTGTGC+GGG | + | chr6.1:38645925-38645944 | MS.gene91004:CDS | 50.0% | |
| CAAGATGCAGGGTGAGACTA+AGG | + | chr6.1:38648131-38648150 | MS.gene91004:intron | 50.0% | |
| CATTGCACCAAACGAGTGTG+CGG | + | chr6.1:38645924-38645943 | MS.gene91004:CDS | 50.0% | |
| CGGGTTTGCCTAGTATCGTT+TGG | + | chr6.1:38645944-38645963 | MS.gene91004:intron | 50.0% | |
| GATGACGCTGGTAGTAGTTG+TGG | + | chr6.1:38645697-38645716 | MS.gene91004:CDS | 50.0% | |
| GCATGTTGAGGATCTCGTTG+AGG | + | chr6.1:38647515-38647534 | MS.gene91004:CDS | 50.0% | |
| GTTTGCACAGTGTTCTGCCA+AGG | + | chr6.1:38647671-38647690 | MS.gene91004:intron | 50.0% | |
| TTGTGGCCAGTGGACAATAG+AGG | + | chr6.1:38645714-38645733 | MS.gene91004:CDS | 50.0% | |
| ! | CGTTGAGGAGCATGGAAAAG+GGG | + | chr6.1:38647530-38647549 | MS.gene91004:CDS | 50.0% |
| ! | CTCGTTGAGGAGCATGGAAA+AGG | + | chr6.1:38647528-38647547 | MS.gene91004:CDS | 50.0% |
| ! | GCTGCTGCTGATGATGATGA+TGG | + | chr6.1:38647447-38647466 | MS.gene91004:CDS | 50.0% |
| CTGCTCATGCATGCGAACTC+TGG | + | chr6.1:38645817-38645836 | MS.gene91004:intron | 55.0% | |
| CTGGTAGTAGTTGTGGCCAG+TGG | + | chr6.1:38645704-38645723 | MS.gene91004:CDS | 55.0% | |
| GAGGATCTCGTTGAGGAGCA+TGG | + | chr6.1:38647522-38647541 | MS.gene91004:CDS | 55.0% | |
| GCACAGTGTTCTGCCAAGGA+AGG | + | chr6.1:38647675-38647694 | MS.gene91004:intron | 55.0% | |
| TCTTGGTCCCCAAAGAGCTC+TGG | - | chr6.1:38646877-38646896 | None:intergenic | 55.0% | |
| ! | GGTTGCGCTCACAAGTTGAC+AGG | + | chr6.1:38645881-38645900 | MS.gene91004:CDS | 55.0% |
| !! | ACTGTTGGAGGGTGGTGGAA+AGG | + | chr6.1:38645757-38645776 | MS.gene91004:CDS | 55.0% |
| !! | GAAGATGGACTGTTGGAGGG+TGG | + | chr6.1:38645749-38645768 | MS.gene91004:CDS | 55.0% |
| AGGAGGGGAAGCTCGACATG+AGG | + | chr6.1:38647716-38647735 | MS.gene91004:CDS | 60.0% | |
| GGCAAACCCGCACACTCGTT+TGG | - | chr6.1:38645934-38645953 | None:intergenic | 60.0% | |
| !! | GATGGACTGTTGGAGGGTGG+TGG | + | chr6.1:38645752-38645771 | MS.gene91004:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 38645694 | 38648657 | 38645694 | ID=MS.gene91004 |
| chr6.1 | mRNA | 38645694 | 38648657 | 38645694 | ID=MS.gene91004.t1;Parent=MS.gene91004 |
| chr6.1 | exon | 38645694 | 38645790 | 38645694 | ID=MS.gene91004.t1.exon1;Parent=MS.gene91004.t1 |
| chr6.1 | CDS | 38645694 | 38645790 | 38645694 | ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1 |
| chr6.1 | exon | 38645866 | 38645960 | 38645866 | ID=MS.gene91004.t1.exon2;Parent=MS.gene91004.t1 |
| chr6.1 | CDS | 38645866 | 38645960 | 38645866 | ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1 |
| chr6.1 | exon | 38647423 | 38647572 | 38647423 | ID=MS.gene91004.t1.exon3;Parent=MS.gene91004.t1 |
| chr6.1 | CDS | 38647423 | 38647572 | 38647423 | ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1 |
| chr6.1 | exon | 38647681 | 38647737 | 38647681 | ID=MS.gene91004.t1.exon4;Parent=MS.gene91004.t1 |
| chr6.1 | CDS | 38647681 | 38647737 | 38647681 | ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1 |
| chr6.1 | exon | 38648616 | 38648657 | 38648616 | ID=MS.gene91004.t1.exon5;Parent=MS.gene91004.t1 |
| chr6.1 | CDS | 38648616 | 38648657 | 38648616 | ID=cds.MS.gene91004.t1;Parent=MS.gene91004.t1 |
| Gene Sequence |
| Protein sequence |
