Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91904.t1 | RHN55325.1 | 98.9 | 182 | 2 | 0 | 1 | 182 | 58 | 239 | 1.40E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91904.t1 | Q9S784 | 62.5 | 184 | 55 | 4 | 6 | 182 | 8 | 184 | 2.2e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91904.t1 | G7KCI8 | 98.9 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 1.0e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91904 | MS.gene72395 | PPI |
| MS.gene91904 | MS.gene030064 | PPI |
| MS.gene83241 | MS.gene91904 | PPI |
| MS.gene91904 | MS.gene81030 | PPI |
| MS.gene91904 | MS.gene72394 | PPI |
| MS.gene91904 | MS.gene038370 | PPI |
| MS.gene91904 | MS.gene062344 | PPI |
| MS.gene017137 | MS.gene91904 | PPI |
| MS.gene045787 | MS.gene91904 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91904.t1 | MTR_5g039530 | 98.901 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 2.22e-134 | 373 |
| MS.gene91904.t1 | MTR_4g108350 | 61.494 | 174 | 55 | 3 | 8 | 180 | 11 | 173 | 3.73e-75 | 223 |
| MS.gene91904.t1 | MTR_4g108350 | 58.046 | 174 | 52 | 4 | 8 | 180 | 11 | 164 | 1.11e-66 | 201 |
| MS.gene91904.t1 | MTR_3g452470 | 43.396 | 159 | 85 | 1 | 8 | 166 | 3 | 156 | 1.00e-40 | 135 |
| MS.gene91904.t1 | MTR_5g091800 | 44.172 | 163 | 79 | 2 | 7 | 166 | 2 | 155 | 7.78e-40 | 133 |
| MS.gene91904.t1 | MTR_8g096670 | 47.619 | 105 | 52 | 1 | 9 | 110 | 4 | 108 | 2.08e-29 | 105 |
| MS.gene91904.t1 | MTR_8g096670 | 52.174 | 92 | 41 | 1 | 22 | 110 | 7 | 98 | 1.76e-28 | 102 |
| MS.gene91904.t1 | MTR_3g099010 | 50.526 | 95 | 47 | 0 | 9 | 103 | 4 | 98 | 2.12e-27 | 101 |
| MS.gene91904.t1 | MTR_4g093260 | 41.722 | 151 | 78 | 3 | 8 | 158 | 6 | 146 | 1.23e-26 | 105 |
| MS.gene91904.t1 | MTR_4g093510 | 41.429 | 140 | 72 | 3 | 19 | 158 | 17 | 146 | 7.22e-26 | 103 |
| MS.gene91904.t1 | MTR_4g093270 | 38.889 | 144 | 78 | 3 | 19 | 162 | 14 | 147 | 1.88e-25 | 100 |
| MS.gene91904.t1 | MTR_4g093280 | 35.429 | 175 | 98 | 4 | 8 | 179 | 6 | 168 | 1.44e-23 | 96.7 |
| MS.gene91904.t1 | MTR_4g093260 | 41.221 | 131 | 67 | 3 | 32 | 162 | 21 | 141 | 1.77e-23 | 97.1 |
| MS.gene91904.t1 | MTR_5g019720 | 34.066 | 91 | 60 | 0 | 20 | 110 | 32 | 122 | 1.77e-12 | 63.2 |
| MS.gene91904.t1 | MTR_5g019720 | 34.483 | 87 | 57 | 0 | 24 | 110 | 36 | 122 | 4.04e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91904.t1 | AT1G69700 | 61.170 | 188 | 59 | 4 | 2 | 182 | 4 | 184 | 1.41e-79 | 234 |
| MS.gene91904.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 9.72e-69 | 207 |
| MS.gene91904.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 9.72e-69 | 207 |
| MS.gene91904.t1 | AT5G62490 | 45.355 | 183 | 83 | 4 | 1 | 182 | 1 | 167 | 7.38e-50 | 159 |
| MS.gene91904.t1 | AT2G42820 | 38.509 | 161 | 92 | 2 | 7 | 166 | 2 | 156 | 1.73e-36 | 124 |
| MS.gene91904.t1 | AT5G50720 | 56.471 | 85 | 37 | 0 | 19 | 103 | 14 | 98 | 1.81e-27 | 100 |
| MS.gene91904.t1 | AT4G24960 | 51.190 | 84 | 41 | 0 | 20 | 103 | 15 | 98 | 2.16e-25 | 95.5 |
| MS.gene91904.t1 | AT4G24960 | 51.282 | 78 | 38 | 0 | 26 | 103 | 2 | 79 | 1.15e-23 | 91.3 |
| MS.gene91904.t1 | AT4G24960 | 47.761 | 67 | 35 | 0 | 37 | 103 | 1 | 67 | 8.78e-18 | 75.1 |
| MS.gene91904.t1 | AT4G36720 | 28.571 | 112 | 79 | 1 | 20 | 130 | 40 | 151 | 4.84e-11 | 59.3 |
Find 35 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAATGGCTCACTTAT+TGG | 0.141168 | 5.3:-27712122 | MS.gene91904:CDS |
| TTGGTTCTTCCTCACTTTAA+TGG | 0.200883 | 5.3:-27710040 | MS.gene91904:CDS |
| AACTTTGCATAAGGCCAAAT+TGG | 0.249813 | 5.3:+27710079 | None:intergenic |
| CACAATATTCTTGGTCTCTA+TGG | 0.250451 | 5.3:+27712149 | None:intergenic |
| CTGCCAAACATGGGTGCTTC+TGG | 0.275435 | 5.3:-27712458 | None:intergenic |
| TTGGTCATCCACAATATTCT+TGG | 0.310926 | 5.3:+27712140 | None:intergenic |
| GAGAGGTACATGCAAGAAAA+TGG | 0.319550 | 5.3:-27709869 | MS.gene91904:CDS |
| CCAACAATGGCTCACTTATT+GGG | 0.324995 | 5.3:-27712121 | MS.gene91904:CDS |
| TACCACATTTGCGAAGTTCC+TGG | 0.390647 | 5.3:+27709944 | None:intergenic |
| AACTTACACTTCAAGAACTT+TGG | 0.394572 | 5.3:+27712059 | None:intergenic |
| GCGGCATTTGTGGTAATTGT+GGG | 0.420764 | 5.3:+27709972 | None:intergenic |
| CCCAATAAGTGAGCCATTGT+TGG | 0.422265 | 5.3:+27712121 | None:intergenic |
| CAAAGTTGATACTCAGTTGT+TGG | 0.430996 | 5.3:-27710063 | MS.gene91904:CDS |
| CCTGGCATTAGCGGCATTTG+TGG | 0.433095 | 5.3:+27709962 | None:intergenic |
| AGCGGCATTTGTGGTAATTG+TGG | 0.440775 | 5.3:+27709971 | None:intergenic |
| CTGAGTATCAACTTTGCATA+AGG | 0.481899 | 5.3:+27710070 | None:intergenic |
| GAATCTAAAGCAAGGAGGAA+TGG | 0.484072 | 5.3:-27709618 | MS.gene91904:CDS |
| CCACAAATGCCGCTAATGCC+AGG | 0.511549 | 5.3:-27709962 | MS.gene91904:CDS |
| TGTCAGATATGCTTCAATCA+AGG | 0.516461 | 5.3:-27712172 | MS.gene91904:intron |
| TGCGAAGTTCCTGGCATTAG+CGG | 0.524899 | 5.3:+27709953 | None:intergenic |
| GTTGATACTCAGTTGTTGGT+TGG | 0.525204 | 5.3:-27710059 | MS.gene91904:CDS |
| CGCAAATGTGGTATGTTCCA+CGG | 0.554204 | 5.3:-27709934 | MS.gene91904:CDS |
| TGCCAGGAACTTCGCAAATG+TGG | 0.559503 | 5.3:-27709946 | MS.gene91904:CDS |
| AATTGTGGGTTCATGTAGAA+TGG | 0.566744 | 5.3:+27709986 | None:intergenic |
| CATAGAGACCAAGAATATTG+TGG | 0.608881 | 5.3:-27712148 | MS.gene91904:CDS |
| TTACTGAATATGTTCTTCCG+TGG | 0.635410 | 5.3:+27709917 | None:intergenic |
| ATACTTACAAAGGATAAACA+AGG | 0.644880 | 5.3:+27712273 | None:intergenic |
| GGATAAACAAGGGTTACCAA+AGG | 0.666185 | 5.3:+27712284 | None:intergenic |
| CTGACAGAGAATCTAAAGCA+AGG | 0.668145 | 5.3:-27709626 | MS.gene91904:CDS |
| ATATTGTGGATGACCAACAA+TGG | 0.675465 | 5.3:-27712134 | MS.gene91904:CDS |
| TGTGCTGCTCCATTAAAGTG+AGG | 0.689754 | 5.3:+27710031 | None:intergenic |
| TACTTACAAAGGATAAACAA+GGG | 0.713530 | 5.3:+27712274 | None:intergenic |
| ATTTGAAAGACTCATCACAA+AGG | 0.722475 | 5.3:-27709837 | MS.gene91904:intron |
| ATGTTCTTAGTGCTGCAGAG+AGG | 0.731265 | 5.3:-27709886 | MS.gene91904:CDS |
| ACAGAGAATCTAAAGCAAGG+AGG | 0.733583 | 5.3:-27709623 | MS.gene91904:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGTAATTTAAACTT+CGG | + | chr5.3:27712272-27712291 | None:intergenic | 10.0% |
| !!! | TATAATGATATTTTTCAAAT+AGG | - | chr5.3:27710212-27710231 | MS.gene91904:intron | 10.0% |
| !! | AAATTATAACATACTTACAA+AGG | + | chr5.3:27709770-27709789 | None:intergenic | 15.0% |
| !! | ATGAATTAAAAATGTGATAA+TGG | + | chr5.3:27711022-27711041 | None:intergenic | 15.0% |
| !! | ATTACTAAATTTGAAAAACT+AGG | - | chr5.3:27712280-27712299 | MS.gene91904:intron | 15.0% |
| !! | TGAATTAAAAATGTGATAAT+GGG | + | chr5.3:27711021-27711040 | None:intergenic | 15.0% |
| !!! | ATATCACCTAATATTTTTTT+TGG | - | chr5.3:27712225-27712244 | MS.gene91904:intron | 15.0% |
| !!! | ATCAAATGATTTTATGATAT+TGG | + | chr5.3:27710919-27710938 | None:intergenic | 15.0% |
| !!! | ATTATCACATTTTTAATTCA+TGG | - | chr5.3:27711021-27711040 | MS.gene91904:intron | 15.0% |
| !!! | TAACATAAAGTCTATTTTAT+GGG | - | chr5.3:27710086-27710105 | MS.gene91904:CDS | 15.0% |
| !!! | TTAACATAAAGTCTATTTTA+TGG | - | chr5.3:27710085-27710104 | MS.gene91904:CDS | 15.0% |
| !! | AAAAAACTAATCATAACTGA+AGG | + | chr5.3:27710668-27710687 | None:intergenic | 20.0% |
| !! | TCTTCACCAAAAAAAATATT+AGG | + | chr5.3:27712234-27712253 | None:intergenic | 20.0% |
| !!! | AAATGATTTTATGATATTGG+AGG | + | chr5.3:27710916-27710935 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTATGAGTAAATC+TGG | - | chr5.3:27709989-27710008 | MS.gene91904:CDS | 20.0% |
| !!! | CTGTTGTTTTTTTAGAAAAT+TGG | - | chr5.3:27712309-27712328 | MS.gene91904:intron | 20.0% |
| ! | AAATCTTGAACTATGAAGTA+AGG | + | chr5.3:27711727-27711746 | None:intergenic | 25.0% |
| ! | AACTATTAAGGCTACTAATT+TGG | + | chr5.3:27710570-27710589 | None:intergenic | 25.0% |
| ! | ACATAATCACTCATTTAAAC+AGG | + | chr5.3:27710541-27710560 | None:intergenic | 25.0% |
| ! | ACATGTTAATGCAACTATTA+AGG | + | chr5.3:27710582-27710601 | None:intergenic | 25.0% |
| ! | ACTATTAAGGCTACTAATTT+GGG | + | chr5.3:27710569-27710588 | None:intergenic | 25.0% |
| ! | ATACTTACAAAGGATAAACA+AGG | + | chr5.3:27709760-27709779 | None:intergenic | 25.0% |
| ! | GCTATTTAACATAGATACAA+AGG | + | chr5.3:27709657-27709676 | None:intergenic | 25.0% |
| ! | GGTTTATAGAAAAGTTAGAA+AGG | - | chr5.3:27710107-27710126 | MS.gene91904:intron | 25.0% |
| ! | TACTTACAAAGGATAAACAA+GGG | + | chr5.3:27709759-27709778 | None:intergenic | 25.0% |
| ! | TCAAATAAAGAATCGCAAAA+TGG | + | chr5.3:27710977-27710996 | None:intergenic | 25.0% |
| ! | TTATCCTTTAATTCTTCTCT+TGG | + | chr5.3:27710496-27710515 | None:intergenic | 25.0% |
| !! | ATATCATAGCATTGAAATCT+TGG | + | chr5.3:27711639-27711658 | None:intergenic | 25.0% |
| !! | CTCTTAATTGATTCAACTAA+AGG | - | chr5.3:27711401-27711420 | MS.gene91904:intron | 25.0% |
| !! | CTGAAGTAATTGCTAATTTT+TGG | + | chr5.3:27710278-27710297 | None:intergenic | 25.0% |
| !! | TATCATAGCATTGAAATCTT+GGG | + | chr5.3:27711638-27711657 | None:intergenic | 25.0% |
| !!! | AGTATTTATACTAGTCTTCT+AGG | - | chr5.3:27710771-27710790 | MS.gene91904:intron | 25.0% |
| !!! | AGTTGATAATTGCAATTTTC+AGG | - | chr5.3:27711925-27711944 | MS.gene91904:intron | 25.0% |
| !!! | CTTGTGTTTATTTTTTTTGC+AGG | - | chr5.3:27709723-27709742 | MS.gene91904:intron | 25.0% |
| !!! | GTGAGTTTTTTTTGATCTAT+TGG | - | chr5.3:27709826-27709845 | MS.gene91904:intron | 25.0% |
| !!! | GTTTTGCTTTTGACTTAAAA+GGG | - | chr5.3:27711291-27711310 | MS.gene91904:intron | 25.0% |
| AAAATGGTGAGATCACTATA+AGG | + | chr5.3:27710961-27710980 | None:intergenic | 30.0% | |
| AACTATGTGATCAAGTCATT+GGG | + | chr5.3:27711080-27711099 | None:intergenic | 30.0% | |
| AACTATGTTATCATGGAATC+AGG | + | chr5.3:27711177-27711196 | None:intergenic | 30.0% | |
| AACTTACACTTCAAGAACTT+TGG | + | chr5.3:27709974-27709993 | None:intergenic | 30.0% | |
| AGCCATTTGATTATGATATC+AGG | + | chr5.3:27711613-27711632 | None:intergenic | 30.0% | |
| ATAACAACAAAAAAGAGCAG+TGG | + | chr5.3:27711793-27711812 | None:intergenic | 30.0% | |
| ATGTATCTGATCTATACATC+AGG | + | chr5.3:27710303-27710322 | None:intergenic | 30.0% | |
| ATTTGAAAGACTCATCACAA+AGG | - | chr5.3:27712193-27712212 | MS.gene91904:intron | 30.0% | |
| CAGATACATTAGTTATTCGA+TGG | - | chr5.3:27710314-27710333 | MS.gene91904:intron | 30.0% | |
| GAATTGTTTGCAACAATTGT+GGG | + | chr5.3:27710706-27710725 | None:intergenic | 30.0% | |
| GCCATTTGATTATGATATCA+GGG | + | chr5.3:27711612-27711631 | None:intergenic | 30.0% | |
| GTTTGAAAAAGAATTGTTCC+AGG | - | chr5.3:27711359-27711378 | MS.gene91904:intron | 30.0% | |
| TAACTATGTGATCAAGTCAT+TGG | + | chr5.3:27711081-27711100 | None:intergenic | 30.0% | |
| TATCAACTTTGCAAAAGTCT+TGG | + | chr5.3:27711913-27711932 | None:intergenic | 30.0% | |
| TATGATCACAGTTTACCAAT+TGG | - | chr5.3:27711656-27711675 | MS.gene91904:intron | 30.0% | |
| TCAACCAAGAGAAGAATTAA+AGG | - | chr5.3:27710489-27710508 | MS.gene91904:intron | 30.0% | |
| TGAATTGTTTGCAACAATTG+TGG | + | chr5.3:27710707-27710726 | None:intergenic | 30.0% | |
| ! | AGCAAGAACATCAAAGTTTT+TGG | + | chr5.3:27709621-27709640 | None:intergenic | 30.0% |
| ! | GGAAAAAAGCTCTAGTAATT+TGG | - | chr5.3:27711312-27711331 | MS.gene91904:intron | 30.0% |
| ! | TTAACATGTCTAGTAGGTTT+TGG | - | chr5.3:27710593-27710612 | MS.gene91904:intron | 30.0% |
| ! | TTTTATGATATTGGAGGCAA+AGG | + | chr5.3:27710910-27710929 | None:intergenic | 30.0% |
| !! | ATTTGCGTGCTTTATTTAGT+GGG | - | chr5.3:27711832-27711851 | MS.gene91904:intron | 30.0% |
| !! | TAAGTTTTGACCAAGACAAA+AGG | + | chr5.3:27710245-27710264 | None:intergenic | 30.0% |
| !! | TTTATACTAGTCTTCTAGGT+TGG | - | chr5.3:27710775-27710794 | MS.gene91904:intron | 30.0% |
| !!! | AAGGTAACGTTTTTTCTCTT+TGG | + | chr5.3:27710891-27710910 | None:intergenic | 30.0% |
| !!! | GGTTTTGCTTTTGACTTAAA+AGG | - | chr5.3:27711290-27711309 | MS.gene91904:intron | 30.0% |
| !!! | TTATTTTTTTTGCAGGCCTT+TGG | - | chr5.3:27709730-27709749 | MS.gene91904:intron | 30.0% |
| AAAAAGAATTGTTCCAGGCA+GGG | - | chr5.3:27711364-27711383 | MS.gene91904:intron | 35.0% | |
| AACAGTGCGATTATGGAATT+AGG | + | chr5.3:27711580-27711599 | None:intergenic | 35.0% | |
| AACCATATGATCATGGTAAC+AGG | + | chr5.3:27711242-27711261 | None:intergenic | 35.0% | |
| AACTTTGCATAAGGCCAAAT+TGG | + | chr5.3:27711954-27711973 | None:intergenic | 35.0% | |
| AAGTGGTTGTACTCTACTAA+AGG | + | chr5.3:27710449-27710468 | None:intergenic | 35.0% | |
| AATTGTGGGTTCATGTAGAA+TGG | + | chr5.3:27712047-27712066 | None:intergenic | 35.0% | |
| ACTATGTGATCAAGTCATTG+GGG | + | chr5.3:27711079-27711098 | None:intergenic | 35.0% | |
| ATATTGTGGATGACCAACAA+TGG | - | chr5.3:27709896-27709915 | MS.gene91904:CDS | 35.0% | |
| ATCCTGTTACCATGATCATA+TGG | - | chr5.3:27711237-27711256 | MS.gene91904:intron | 35.0% | |
| ATGGCTAAACCATATGATCA+TGG | + | chr5.3:27711249-27711268 | None:intergenic | 35.0% | |
| ATGGGTGAACTATGTTATCA+TGG | + | chr5.3:27711184-27711203 | None:intergenic | 35.0% | |
| CACAATATTCTTGGTCTCTA+TGG | + | chr5.3:27709884-27709903 | None:intergenic | 35.0% | |
| CATAGAGACCAAGAATATTG+TGG | - | chr5.3:27709882-27709901 | MS.gene91904:CDS | 35.0% | |
| CGATTATGGAATTAGGTTCA+TGG | + | chr5.3:27711573-27711592 | None:intergenic | 35.0% | |
| CTGAGTATCAACTTTGCATA+AGG | + | chr5.3:27711963-27711982 | None:intergenic | 35.0% | |
| GCCCTGATATCATAATCAAA+TGG | - | chr5.3:27711608-27711627 | MS.gene91904:intron | 35.0% | |
| GTACTCGAATGAATACCAAT+AGG | - | chr5.3:27710855-27710874 | MS.gene91904:intron | 35.0% | |
| GTTGCATTAACATGTCTAGT+AGG | - | chr5.3:27710587-27710606 | MS.gene91904:intron | 35.0% | |
| TCAACAAAAACACCAGTGAT+AGG | + | chr5.3:27710822-27710841 | None:intergenic | 35.0% | |
| TGATCAAGGTTTCAAAGTCA+TGG | + | chr5.3:27711540-27711559 | None:intergenic | 35.0% | |
| TGTCAGATATGCTTCAATCA+AGG | - | chr5.3:27709858-27709877 | MS.gene91904:CDS | 35.0% | |
| TTACTGAATATGTTCTTCCG+TGG | + | chr5.3:27712116-27712135 | None:intergenic | 35.0% | |
| TTATAATAGAGACTGTGCAG+AGG | - | chr5.3:27710360-27710379 | MS.gene91904:intron | 35.0% | |
| TTGGTCATCCACAATATTCT+TGG | + | chr5.3:27709893-27709912 | None:intergenic | 35.0% | |
| ! | ATCCATGTGAACATGGTTTT+AGG | + | chr5.3:27711047-27711066 | None:intergenic | 35.0% |
| ! | ATGGATTAACCATGTGATCA+GGG | + | chr5.3:27711521-27711540 | None:intergenic | 35.0% |
| ! | ATGGATTATCCATGTGAACA+TGG | + | chr5.3:27711054-27711073 | None:intergenic | 35.0% |
| ! | TATTCGATGGACTTAAGAAG+TGG | - | chr5.3:27710327-27710346 | MS.gene91904:intron | 35.0% |
| ! | TGCAGGTTGAAAATATGAAG+TGG | + | chr5.3:27710466-27710485 | None:intergenic | 35.0% |
| ! | TTGGTTCTTCCTCACTTTAA+TGG | - | chr5.3:27711990-27712009 | MS.gene91904:intron | 35.0% |
| ! | TTTTGTTGAGAGTTGGATTG+AGG | - | chr5.3:27710833-27710852 | MS.gene91904:intron | 35.0% |
| !! | ACTTTGAAACCTTGATCACA+TGG | - | chr5.3:27711542-27711561 | MS.gene91904:intron | 35.0% |
| !! | CAAAGTTGATACTCAGTTGT+TGG | - | chr5.3:27711967-27711986 | MS.gene91904:intron | 35.0% |
| !! | CAATTTTCAGGCTTCCAATT+TGG | - | chr5.3:27711937-27711956 | MS.gene91904:intron | 35.0% |
| !! | CTTTGAAACCTTGATCACAT+GGG | - | chr5.3:27711543-27711562 | MS.gene91904:intron | 35.0% |
| !! | GATTTGCGTGCTTTATTTAG+TGG | - | chr5.3:27711831-27711850 | MS.gene91904:intron | 35.0% |
| !!! | AGGTTTTGGCTAGGATAATT+AGG | - | chr5.3:27710607-27710626 | MS.gene91904:intron | 35.0% |
| ACCAACAATGGCTCACTTAT+TGG | - | chr5.3:27709908-27709927 | MS.gene91904:CDS | 40.0% | |
| ACCATGTGATCATAGCATTG+AGG | + | chr5.3:27711273-27711292 | None:intergenic | 40.0% | |
| ACCCATGTGATCATTGTGTT+AGG | + | chr5.3:27711453-27711472 | None:intergenic | 40.0% | |
| ACCCTAACACAATGATCACA+TGG | - | chr5.3:27711448-27711467 | MS.gene91904:intron | 40.0% | |
| CCAACAATGGCTCACTTATT+GGG | - | chr5.3:27709909-27709928 | MS.gene91904:CDS | 40.0% | |
| CCCATGTGATCATTGTGTTA+GGG | + | chr5.3:27711452-27711471 | None:intergenic | 40.0% | |
| CCCTAACACAATGATCACAT+GGG | - | chr5.3:27711449-27711468 | MS.gene91904:intron | 40.0% | |
| CTAATCATAACTGAAGGTCG+TGG | + | chr5.3:27710662-27710681 | None:intergenic | 40.0% | |
| GAAAAAGAATTGTTCCAGGC+AGG | - | chr5.3:27711363-27711382 | MS.gene91904:intron | 40.0% | |
| GGATAAACAAGGGTTACCAA+AGG | + | chr5.3:27709749-27709768 | None:intergenic | 40.0% | |
| GTCTGCACATCAACAACAAT+AGG | + | chr5.3:27712385-27712404 | None:intergenic | 40.0% | |
| GTGGAACAATTGCAGAACAA+CGG | + | chr5.3:27710643-27710662 | None:intergenic | 40.0% | |
| GTGTGTTAACAGTGCGATTA+TGG | + | chr5.3:27711587-27711606 | None:intergenic | 40.0% | |
| GTTGATACTCAGTTGTTGGT+TGG | - | chr5.3:27711971-27711990 | MS.gene91904:intron | 40.0% | |
| TCCTCAATGCTATGATCACA+TGG | - | chr5.3:27711269-27711288 | MS.gene91904:intron | 40.0% | |
| TGATAGGACTTAACCCCATT+AGG | + | chr5.3:27710806-27710825 | None:intergenic | 40.0% | |
| TGATTGTGACTTCGTGTCAT+GGG | + | chr5.3:27711202-27711221 | None:intergenic | 40.0% | |
| TTTGGACTTCACTCACCTAT+TGG | + | chr5.3:27710873-27710892 | None:intergenic | 40.0% | |
| ! | ACAGAGAATCTAAAGCAAGG+AGG | - | chr5.3:27712407-27712426 | MS.gene91904:intron | 40.0% |
| ! | ATGGATTACCCATGTGATCA+AGG | + | chr5.3:27711554-27711573 | None:intergenic | 40.0% |
| ! | CATGGATTAACCATGTGATC+AGG | + | chr5.3:27711522-27711541 | None:intergenic | 40.0% |
| ! | CTAGGTTGGACTTTCCTAAT+GGG | - | chr5.3:27710789-27710808 | MS.gene91904:intron | 40.0% |
| ! | CTGACAGAGAATCTAAAGCA+AGG | - | chr5.3:27712404-27712423 | MS.gene91904:intron | 40.0% |
| ! | GAATCTAAAGCAAGGAGGAA+TGG | - | chr5.3:27712412-27712431 | MS.gene91904:CDS | 40.0% |
| ! | GAGAGGTACATGCAAGAAAA+TGG | - | chr5.3:27712161-27712180 | MS.gene91904:CDS | 40.0% |
| ! | GTGATCATAGCATTGAGGAA+TGG | + | chr5.3:27711268-27711287 | None:intergenic | 40.0% |
| ! | TAGGTTGGACTTTCCTAATG+GGG | - | chr5.3:27710790-27710809 | MS.gene91904:intron | 40.0% |
| ! | TCTAGGTTGGACTTTCCTAA+TGG | - | chr5.3:27710788-27710807 | MS.gene91904:intron | 40.0% |
| ! | TTGACCAAGACAAAAGGCAT+TGG | + | chr5.3:27710239-27710258 | None:intergenic | 40.0% |
| !! | CTGGTGTTTTTGTTGAGAGT+TGG | - | chr5.3:27710826-27710845 | MS.gene91904:intron | 40.0% |
| !! | TGACCAAGACAAAAGGCATT+GGG | + | chr5.3:27710238-27710257 | None:intergenic | 40.0% |
| !!! | ATGTCTAGTAGGTTTTGGCT+AGG | - | chr5.3:27710598-27710617 | MS.gene91904:intron | 40.0% |
| AACTATGTGACCATAGCCAC+AGG | + | chr5.3:27711145-27711164 | None:intergenic | 45.0% | |
| ACCAATTGGCTAACGCATAC+TGG | - | chr5.3:27711670-27711689 | MS.gene91904:intron | 45.0% | |
| ACTAAAGGTCATCAACCACC+TGG | - | chr5.3:27711416-27711435 | MS.gene91904:intron | 45.0% | |
| ACTATGTGACCATAGCCACA+GGG | + | chr5.3:27711144-27711163 | None:intergenic | 45.0% | |
| AGCGGCATTTGTGGTAATTG+TGG | + | chr5.3:27712062-27712081 | None:intergenic | 45.0% | |
| ATGGGGTTAAGTCCTATCAC+TGG | - | chr5.3:27710807-27710826 | MS.gene91904:intron | 45.0% | |
| ATGTTCTTAGTGCTGCAGAG+AGG | - | chr5.3:27712144-27712163 | MS.gene91904:CDS | 45.0% | |
| CCCAATAAGTGAGCCATTGT+TGG | + | chr5.3:27709912-27709931 | None:intergenic | 45.0% | |
| CGCAAATGTGGTATGTTCCA+CGG | - | chr5.3:27712096-27712115 | MS.gene91904:CDS | 45.0% | |
| CTAAAGGTCATCAACCACCT+GGG | - | chr5.3:27711417-27711436 | MS.gene91904:intron | 45.0% | |
| CTTCTCTTGGTTGAGTTTGC+AGG | + | chr5.3:27710483-27710502 | None:intergenic | 45.0% | |
| GCGGCATTTGTGGTAATTGT+GGG | + | chr5.3:27712061-27712080 | None:intergenic | 45.0% | |
| GGCCTAAAACCATGTTCACA+TGG | - | chr5.3:27711042-27711061 | MS.gene91904:intron | 45.0% | |
| GTGATTGTGACTTCGTGTCA+TGG | + | chr5.3:27711203-27711222 | None:intergenic | 45.0% | |
| TACCACATTTGCGAAGTTCC+TGG | + | chr5.3:27712089-27712108 | None:intergenic | 45.0% | |
| TCCAGTATGCGTTAGCCAAT+TGG | + | chr5.3:27711674-27711693 | None:intergenic | 45.0% | |
| TGATCAAGTCATTGGGGTCA+TGG | + | chr5.3:27711073-27711092 | None:intergenic | 45.0% | |
| TGTTAGGGTAACCTTTACCC+AGG | + | chr5.3:27711437-27711456 | None:intergenic | 45.0% | |
| ! | CATGTGATCAGGGTTAGCAA+GGG | + | chr5.3:27711511-27711530 | None:intergenic | 45.0% |
| ! | TGTGCTGCTCCATTAAAGTG+AGG | + | chr5.3:27712002-27712021 | None:intergenic | 45.0% |
| CCTTGCTAACCCTGATCACA+TGG | - | chr5.3:27711509-27711528 | MS.gene91904:intron | 50.0% | |
| GTCATCAACCACCTGGGTAA+AGG | - | chr5.3:27711423-27711442 | MS.gene91904:intron | 50.0% | |
| TAACCCAAACCCTGTGGCTA+TGG | - | chr5.3:27711132-27711151 | MS.gene91904:intron | 50.0% | |
| TAGGGTAACCTTTACCCAGG+TGG | + | chr5.3:27711434-27711453 | None:intergenic | 50.0% | |
| TCTGGATAACCCAAACCCTG+TGG | - | chr5.3:27711126-27711145 | MS.gene91904:intron | 50.0% | |
| TCTTGAGTTCAAACCCTGCC+TGG | + | chr5.3:27711380-27711399 | None:intergenic | 50.0% | |
| TGACCATAGCCACAGGGTTT+GGG | + | chr5.3:27711138-27711157 | None:intergenic | 50.0% | |
| TGCCAGGAACTTCGCAAATG+TGG | - | chr5.3:27712084-27712103 | MS.gene91904:CDS | 50.0% | |
| TGCGAAGTTCCTGGCATTAG+CGG | + | chr5.3:27712080-27712099 | None:intergenic | 50.0% | |
| TTGGGTTATCCAGATGGTCC+TGG | + | chr5.3:27711120-27711139 | None:intergenic | 50.0% | |
| ! | AGGCCCAATGCCTTTTGTCT+TGG | - | chr5.3:27710232-27710251 | MS.gene91904:intron | 50.0% |
| ! | CAGGGTTTGGGTTATCCAGA+TGG | + | chr5.3:27711126-27711145 | None:intergenic | 50.0% |
| ! | CCATGTGATCAGGGTTAGCA+AGG | + | chr5.3:27711512-27711531 | None:intergenic | 50.0% |
| ATCCAGATGGTCCTGGCATC+TGG | + | chr5.3:27711113-27711132 | None:intergenic | 55.0% | |
| CCACAAATGCCGCTAATGCC+AGG | - | chr5.3:27712068-27712087 | MS.gene91904:CDS | 55.0% | |
| CCTGGCATTAGCGGCATTTG+TGG | + | chr5.3:27712071-27712090 | None:intergenic | 55.0% | |
| GTGACCATAGCCACAGGGTT+TGG | + | chr5.3:27711139-27711158 | None:intergenic | 55.0% | |
| TAACCCATCACCCAGATGCC+AGG | - | chr5.3:27711099-27711118 | MS.gene91904:intron | 55.0% | |
| TCCAGATGGTCCTGGCATCT+GGG | + | chr5.3:27711112-27711131 | None:intergenic | 55.0% | |
| ACCCAGATGCCAGGACCATC+TGG | - | chr5.3:27711108-27711127 | MS.gene91904:intron | 60.0% | |
| GGTCCTGGCATCTGGGTGAT+GGG | + | chr5.3:27711105-27711124 | None:intergenic | 60.0% | |
| TGGTCCTGGCATCTGGGTGA+TGG | + | chr5.3:27711106-27711125 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 27709581 | 27712471 | 27709581 | ID=MS.gene91904 |
| chr5.3 | mRNA | 27709581 | 27712471 | 27709581 | ID=MS.gene91904.t1;Parent=MS.gene91904 |
| chr5.3 | exon | 27712410 | 27712471 | 27712410 | ID=MS.gene91904.t1.exon1;Parent=MS.gene91904.t1 |
| chr5.3 | CDS | 27712410 | 27712471 | 27712410 | ID=cds.MS.gene91904.t1;Parent=MS.gene91904.t1 |
| chr5.3 | exon | 27712281 | 27712307 | 27712281 | ID=MS.gene91904.t1.exon2;Parent=MS.gene91904.t1 |
| chr5.3 | CDS | 27712281 | 27712307 | 27712281 | ID=cds.MS.gene91904.t1;Parent=MS.gene91904.t1 |
| chr5.3 | exon | 27712066 | 27712188 | 27712066 | ID=MS.gene91904.t1.exon3;Parent=MS.gene91904.t1 |
| chr5.3 | CDS | 27712066 | 27712188 | 27712066 | ID=cds.MS.gene91904.t1;Parent=MS.gene91904.t1 |
| chr5.3 | exon | 27709838 | 27710105 | 27709838 | ID=MS.gene91904.t1.exon4;Parent=MS.gene91904.t1 |
| chr5.3 | CDS | 27709838 | 27710105 | 27709838 | ID=cds.MS.gene91904.t1;Parent=MS.gene91904.t1 |
| chr5.3 | exon | 27709581 | 27709649 | 27709581 | ID=MS.gene91904.t1.exon5;Parent=MS.gene91904.t1 |
| chr5.3 | CDS | 27709581 | 27709649 | 27709581 | ID=cds.MS.gene91904.t1;Parent=MS.gene91904.t1 |
| Gene Sequence |
| Protein sequence |
