Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92406.t1 | XP_003627775.1 | 97.8 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 5.10E-172 | 613.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92406.t1 | Q9ZVJ6 | 58.8 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 3.2e-98 | 359.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92406.t1 | G7LF83 | 97.8 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 3.7e-172 | 613.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056196 | MS.gene92406 | 0.968361 | 1.44E-128 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92406 | MS.gene92405 | PPI |
| MS.gene056195 | MS.gene92406 | PPI |
| MS.gene45772 | MS.gene92406 | PPI |
| MS.gene016642 | MS.gene92406 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92406.t1 | MTR_8g038170 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| MS.gene92406.t1 | MTR_8g038170 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| MS.gene92406.t1 | MTR_5g063670 | 39.432 | 317 | 165 | 6 | 4 | 311 | 14 | 312 | 1.93e-62 | 201 |
| MS.gene92406.t1 | MTR_8g038220 | 38.801 | 317 | 167 | 8 | 5 | 312 | 13 | 311 | 3.01e-59 | 192 |
| MS.gene92406.t1 | MTR_8g038150 | 36.957 | 322 | 173 | 8 | 4 | 313 | 14 | 317 | 1.60e-58 | 191 |
| MS.gene92406.t1 | MTR_8g038220 | 39.172 | 314 | 164 | 8 | 8 | 312 | 17 | 312 | 1.86e-58 | 190 |
| MS.gene92406.t1 | MTR_3g018780 | 37.224 | 317 | 172 | 8 | 5 | 312 | 14 | 312 | 1.22e-55 | 183 |
| MS.gene92406.t1 | MTR_2g031980 | 36.593 | 317 | 172 | 7 | 5 | 311 | 14 | 311 | 8.72e-54 | 178 |
| MS.gene92406.t1 | MTR_3g018790 | 35.962 | 317 | 176 | 7 | 5 | 312 | 14 | 312 | 2.56e-53 | 177 |
| MS.gene92406.t1 | MTR_8g038180 | 36.792 | 318 | 174 | 8 | 5 | 313 | 14 | 313 | 6.03e-53 | 176 |
| MS.gene92406.t1 | MTR_8g038210 | 37.421 | 318 | 171 | 8 | 4 | 312 | 13 | 311 | 1.52e-51 | 172 |
| MS.gene92406.t1 | MTR_8g038210 | 36.909 | 317 | 172 | 8 | 5 | 312 | 14 | 311 | 6.58e-50 | 168 |
| MS.gene92406.t1 | MTR_0276s0050 | 35.535 | 318 | 178 | 6 | 4 | 312 | 14 | 313 | 7.48e-48 | 163 |
| MS.gene92406.t1 | MTR_3g018790 | 38.776 | 245 | 135 | 5 | 76 | 312 | 21 | 258 | 1.10e-45 | 155 |
| MS.gene92406.t1 | MTR_6g071605 | 31.392 | 309 | 189 | 7 | 10 | 311 | 20 | 312 | 1.02e-36 | 134 |
| MS.gene92406.t1 | MTR_8g107640 | 30.645 | 310 | 190 | 6 | 10 | 311 | 20 | 312 | 1.09e-35 | 131 |
| MS.gene92406.t1 | MTR_1g033560 | 28.931 | 318 | 195 | 7 | 5 | 311 | 15 | 312 | 2.07e-34 | 127 |
| MS.gene92406.t1 | MTR_6g071615 | 31.392 | 309 | 189 | 6 | 10 | 311 | 20 | 312 | 6.53e-34 | 126 |
| MS.gene92406.t1 | MTR_6g071595 | 29.773 | 309 | 194 | 6 | 10 | 311 | 20 | 312 | 2.88e-32 | 122 |
| MS.gene92406.t1 | MTR_1g112520 | 29.450 | 309 | 195 | 6 | 10 | 311 | 20 | 312 | 9.49e-30 | 115 |
| MS.gene92406.t1 | MTR_6g028030 | 26.174 | 298 | 201 | 6 | 24 | 312 | 23 | 310 | 1.96e-25 | 103 |
| MS.gene92406.t1 | MTR_3g018920 | 30.952 | 210 | 97 | 4 | 5 | 213 | 14 | 176 | 1.01e-20 | 87.8 |
| MS.gene92406.t1 | MTR_6g071595 | 25.714 | 245 | 161 | 4 | 10 | 247 | 20 | 250 | 3.28e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92406.t1 | AT2G38750 | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 1.71e-128 | 369 |
| MS.gene92406.t1 | AT2G38750 | 59.333 | 300 | 118 | 3 | 16 | 312 | 2 | 300 | 1.77e-124 | 358 |
| MS.gene92406.t1 | AT1G35720 | 38.438 | 320 | 169 | 7 | 2 | 311 | 12 | 313 | 5.92e-62 | 199 |
| MS.gene92406.t1 | AT5G12380 | 37.421 | 318 | 172 | 6 | 5 | 313 | 14 | 313 | 6.01e-60 | 194 |
| MS.gene92406.t1 | AT5G10230 | 39.873 | 316 | 163 | 8 | 5 | 311 | 15 | 312 | 1.19e-57 | 188 |
| MS.gene92406.t1 | AT5G65020 | 38.095 | 315 | 169 | 6 | 8 | 313 | 18 | 315 | 1.86e-56 | 185 |
| MS.gene92406.t1 | AT5G10220 | 38.679 | 318 | 166 | 9 | 5 | 311 | 15 | 314 | 2.41e-54 | 180 |
| MS.gene92406.t1 | AT5G65020 | 37.338 | 308 | 167 | 6 | 15 | 313 | 10 | 300 | 1.30e-53 | 177 |
| MS.gene92406.t1 | AT2G38760 | 37.267 | 322 | 169 | 9 | 5 | 311 | 15 | 318 | 2.36e-52 | 175 |
| MS.gene92406.t1 | AT1G68090 | 30.351 | 313 | 192 | 8 | 8 | 311 | 18 | 313 | 2.86e-38 | 138 |
| MS.gene92406.t1 | AT1G68090 | 30.364 | 247 | 150 | 6 | 8 | 246 | 18 | 250 | 1.83e-27 | 107 |
Find 59 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAGTATTGGGAAAA+TGG | 0.175129 | 8.4:-60231621 | MS.gene92406:CDS |
| GATCATTCCACCTTTGAAAT+TGG | 0.200455 | 8.4:+60231533 | None:intergenic |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8.4:+60230030 | None:intergenic |
| GCTGAGTATAACAACTTATA+TGG | 0.300228 | 8.4:-60228476 | MS.gene92406:CDS |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8.4:+60230031 | None:intergenic |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8.4:-60228947 | MS.gene92406:CDS |
| GCTAGGATCTTAATGACTTA+AGG | 0.319355 | 8.4:-60228744 | MS.gene92406:intron |
| CCTTGGAGAGAGAATCTTAT+AGG | 0.322567 | 8.4:-60231594 | MS.gene92406:CDS |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8.4:+60229060 | None:intergenic |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8.4:+60229111 | None:intergenic |
| ATCAGAATGCAGTGGTGCTT+TGG | 0.364820 | 8.4:-60230097 | MS.gene92406:intron |
| TTGAGGATGATGAAGTAATA+AGG | 0.375348 | 8.4:-60229012 | MS.gene92406:CDS |
| AAGATCTTCAGAGGAACTAT+TGG | 0.377291 | 8.4:-60229979 | MS.gene92406:CDS |
| TGCTTTGGAGCATGCACCCT+TGG | 0.391368 | 8.4:-60230082 | MS.gene92406:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8.4:-60228498 | MS.gene92406:CDS |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8.4:-60229005 | MS.gene92406:CDS |
| AAATCATTGATAACAGTATT+GGG | 0.403331 | 8.4:-60231628 | MS.gene92406:CDS |
| ACTTCATCATCCTCAACAAT+TGG | 0.409615 | 8.4:+60229019 | None:intergenic |
| GAAATCATTGATAACAGTAT+TGG | 0.424006 | 8.4:-60231629 | MS.gene92406:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8.4:+60229048 | None:intergenic |
| GCTTTAACTCAAGCTTTCTC+AGG | 0.434534 | 8.4:-60231813 | MS.gene92406:intron |
| GATAACAGTATTGGGAAAAT+GGG | 0.447759 | 8.4:-60231620 | MS.gene92406:CDS |
| TTACCTTTCTATCATTGCCA+TGG | 0.452976 | 8.4:+60229892 | None:intergenic |
| CAGAGGAACTATTGGGAGCT+AGG | 0.463248 | 8.4:-60229971 | MS.gene92406:CDS |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8.4:-60230026 | MS.gene92406:CDS |
| AAAATTGAAGAGACTGCTAA+AGG | 0.486337 | 8.4:-60228437 | MS.gene92406:CDS |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8.4:+60229920 | None:intergenic |
| AGATCTTCAGAGGAACTATT+GGG | 0.492249 | 8.4:-60229978 | MS.gene92406:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.496277 | 8.4:-60229895 | MS.gene92406:intron |
| TTAGCCTCCTCTAGCAATCA+AGG | 0.503479 | 8.4:+60228391 | None:intergenic |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8.4:-60228507 | MS.gene92406:CDS |
| AGATGCACGTTTAGCAAAAG+AGG | 0.507874 | 8.4:-60230054 | MS.gene92406:CDS |
| TGGAATGGTCAAAGAGAGAA+TGG | 0.508195 | 8.4:+60229940 | None:intergenic |
| GCAAAAGAGGCCCTAAAGAA+AGG | 0.511238 | 8.4:-60230041 | MS.gene92406:CDS |
| ATTGGGAAAATGGGATCCCT+TGG | 0.515294 | 8.4:-60231611 | MS.gene92406:CDS |
| GCTTTGGAGCATGCACCCTT+GGG | 0.524661 | 8.4:-60230081 | MS.gene92406:CDS |
| AAATTGAAGAGACTGCTAAA+GGG | 0.525725 | 8.4:-60228436 | MS.gene92406:CDS |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8.4:-60229118 | MS.gene92406:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8.4:+60229925 | None:intergenic |
| GGAACTATTGGGAGCTAGGA+AGG | 0.530013 | 8.4:-60229967 | MS.gene92406:CDS |
| TTGCTAACCTTGATTGCTAG+AGG | 0.531913 | 8.4:-60228398 | MS.gene92406:CDS |
| CCTATAAGATTCTCTCTCCA+AGG | 0.548162 | 8.4:+60231594 | None:intergenic |
| AAACGTGCATCTCTTTCCCA+AGG | 0.568596 | 8.4:+60230065 | None:intergenic |
| AATATACTTGTGGAGTACAA+AGG | 0.574763 | 8.4:+60228701 | None:intergenic |
| ATCATGAACGCCAATTTCAA+AGG | 0.576589 | 8.4:-60231543 | MS.gene92406:CDS |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8.4:-60229909 | MS.gene92406:CDS |
| ACCTTGCTAAAATATACTTG+TGG | 0.592183 | 8.4:+60228691 | None:intergenic |
| CTATAAGATTCTCTCTCCAA+GGG | 0.593207 | 8.4:+60231595 | None:intergenic |
| ATGAACGCCAATTTCAAAGG+TGG | 0.604776 | 8.4:-60231540 | MS.gene92406:CDS |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8.4:-60228930 | MS.gene92406:intron |
| GACTGCTAAAGGGAACTACA+AGG | 0.615438 | 8.4:-60228426 | MS.gene92406:CDS |
| TCAAAAGAAGCCAATTGTTG+AGG | 0.621583 | 8.4:-60229029 | MS.gene92406:CDS |
| TAAAATAAATCAGAATGCAG+TGG | 0.621993 | 8.4:-60230105 | MS.gene92406:intron |
| AGATGAAACTGCAAAATCAG+AGG | 0.624947 | 8.4:-60229083 | MS.gene92406:CDS |
| CTAACCTTGATTGCTAGAGG+AGG | 0.643976 | 8.4:-60228395 | MS.gene92406:CDS |
| TGCATGCACAAGATCTTCAG+AGG | 0.650638 | 8.4:-60229988 | MS.gene92406:CDS |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8.4:-60229110 | MS.gene92406:CDS |
| AACGTGCATCTCTTTCCCAA+GGG | 0.668764 | 8.4:+60230066 | None:intergenic |
| TGCAGCATTGAAGATTGATG+TGG | 0.671356 | 8.4:-60228570 | MS.gene92406:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCATTAAAATATATGA+TGG | + | chr8.4:60229653-60229672 | None:intergenic | 10.0% |
| !! | TATGTAGTAATAATTTAATA+TGG | + | chr8.4:60228462-60228481 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTGTTTTT+AGG | - | chr8.4:60229805-60229824 | MS.gene92406:intron | 10.0% |
| !!! | AAAAATTCTAATTTTGTTTT+TGG | + | chr8.4:60229710-60229729 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr8.4:60229747-60229766 | MS.gene92406:intron | 10.0% |
| !!! | AATTTTCTTCTTAATTATAA+GGG | + | chr8.4:60230023-60230042 | None:intergenic | 10.0% |
| !!! | ATAATATATTCTTTTTGTTT+TGG | + | chr8.4:60229003-60229022 | None:intergenic | 10.0% |
| !!! | GATTATTTTTTTTAAGTTTA+AGG | + | chr8.4:60229276-60229295 | None:intergenic | 10.0% |
| !!! | TATATTTTCTTATTTGAAAA+TGG | - | chr8.4:60228857-60228876 | MS.gene92406:intron | 10.0% |
| !! | AAAAGTTTAAAGAATATGTT+AGG | - | chr8.4:60229947-60229966 | MS.gene92406:CDS | 15.0% |
| !! | AAAGTTTAAAGAATATGTTA+GGG | - | chr8.4:60229948-60229967 | MS.gene92406:CDS | 15.0% |
| !! | AATCAAATGTTGATATATTT+AGG | + | chr8.4:60229538-60229557 | None:intergenic | 15.0% |
| !! | AATTTCATTAAAAACTATGA+AGG | - | chr8.4:60229863-60229882 | MS.gene92406:intron | 15.0% |
| !! | ATCAAATATTGGTATATTTA+AGG | - | chr8.4:60229979-60229998 | MS.gene92406:CDS | 15.0% |
| !! | ATCAAATGTTGATATATTTA+GGG | + | chr8.4:60229537-60229556 | None:intergenic | 15.0% |
| !! | ATTAGAGTTTAATAAGTAAA+TGG | - | chr8.4:60229508-60229527 | MS.gene92406:intron | 15.0% |
| !! | GTGAATTAGTATTATTTATA+TGG | - | chr8.4:60231001-60231020 | MS.gene92406:intron | 15.0% |
| !! | TAATGAAATTTACTAGAAAT+GGG | - | chr8.4:60229663-60229682 | MS.gene92406:intron | 15.0% |
| !! | TCAAATATTGGTATATTTAA+GGG | - | chr8.4:60229980-60229999 | MS.gene92406:CDS | 15.0% |
| !! | TTAATGAAATTTACTAGAAA+TGG | - | chr8.4:60229662-60229681 | MS.gene92406:intron | 15.0% |
| !! | TTGTTACATGAAAAAAAAAA+TGG | + | chr8.4:60230731-60230750 | None:intergenic | 15.0% |
| !!! | AAAAACCTTAGAAATATTTT+AGG | + | chr8.4:60229569-60229588 | None:intergenic | 15.0% |
| !!! | AATAAAAAGGATATGTTTTT+TGG | - | chr8.4:60229034-60229053 | MS.gene92406:CDS | 15.0% |
| !!! | AATTTTGATTAAACATATGA+AGG | - | chr8.4:60228917-60228936 | MS.gene92406:intron | 15.0% |
| !!! | ATGACTTTTACAAAATAAAA+AGG | - | chr8.4:60229021-60229040 | MS.gene92406:CDS | 15.0% |
| !!! | GAATTTTCTTCTTAATTATA+AGG | + | chr8.4:60230024-60230043 | None:intergenic | 15.0% |
| !!! | TAAAATATTTCTAAGGTTTT+TGG | - | chr8.4:60229568-60229587 | MS.gene92406:intron | 15.0% |
| !!! | TAACATATTCTTTAAACTTT+TGG | + | chr8.4:60229948-60229967 | None:intergenic | 15.0% |
| !!! | TATTTTCTATATACACTTAA+TGG | + | chr8.4:60230905-60230924 | None:intergenic | 15.0% |
| !!! | TCATATATGAAAAATTTTGA+AGG | - | chr8.4:60229921-60229940 | MS.gene92406:CDS | 15.0% |
| !!! | TGCATTTTTTTTTTGTATAT+AGG | - | chr8.4:60231628-60231647 | MS.gene92406:CDS | 15.0% |
| !!! | TGTTCAAAAAAATTTAAGAT+AGG | + | chr8.4:60229079-60229098 | None:intergenic | 15.0% |
| !!! | TTCTCAAAACATTTTTTTTT+TGG | + | chr8.4:60230788-60230807 | None:intergenic | 15.0% |
| !!! | TTTTAAGAATTCTTTTTGTT+TGG | + | chr8.4:60228973-60228992 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCATGTAACAATA+TGG | - | chr8.4:60230733-60230752 | MS.gene92406:intron | 15.0% |
| !!! | TTTTTTTTGTATATAGGTTT+TGG | - | chr8.4:60231634-60231653 | MS.gene92406:CDS | 15.0% |
| !! | AAGTTTAAAGAATATGTTAG+GGG | - | chr8.4:60229949-60229968 | MS.gene92406:CDS | 20.0% |
| !! | AATTTCATAAGTCATATGTT+TGG | + | chr8.4:60231430-60231449 | None:intergenic | 20.0% |
| !! | ATAAGGGTTAAATAAGTAAA+TGG | + | chr8.4:60230007-60230026 | None:intergenic | 20.0% |
| !! | ATATTTACATATCATTGTCT+AGG | + | chr8.4:60230934-60230953 | None:intergenic | 20.0% |
| !! | ATTAACCCAAAAATTAATGT+GGG | + | chr8.4:60230604-60230623 | None:intergenic | 20.0% |
| !! | ATTCATCAAATATCATCAAT+TGG | + | chr8.4:60228545-60228564 | None:intergenic | 20.0% |
| !! | TCAAATGTTGATATATTTAG+GGG | + | chr8.4:60229536-60229555 | None:intergenic | 20.0% |
| !! | TGTTATTATACAACAAAATG+AGG | + | chr8.4:60231585-60231604 | None:intergenic | 20.0% |
| !! | TTATGAATGTTAGATTTCAA+AGG | - | chr8.4:60230972-60230991 | MS.gene92406:intron | 20.0% |
| !! | TTCATCAAATATCATCAATT+GGG | + | chr8.4:60228544-60228563 | None:intergenic | 20.0% |
| !!! | AAATCATTGATAACAGTATT+GGG | - | chr8.4:60228600-60228619 | MS.gene92406:intron | 20.0% |
| !!! | AATTCCATGGTTTTAAATTA+TGG | - | chr8.4:60230419-60230438 | MS.gene92406:intron | 20.0% |
| !!! | ACATTAATTTTTGGGTTAAT+CGG | - | chr8.4:60230604-60230623 | MS.gene92406:intron | 20.0% |
| !!! | ACATTTTTTTTAGGGAATAA+TGG | + | chr8.4:60229362-60229381 | None:intergenic | 20.0% |
| !!! | AGCTAAGAACATTTTTTTTA+GGG | + | chr8.4:60229370-60229389 | None:intergenic | 20.0% |
| !!! | ATTTCATAGATGGAAAATTT+TGG | + | chr8.4:60229598-60229617 | None:intergenic | 20.0% |
| !!! | CTAGACTAAAAATTGATTTT+TGG | - | chr8.4:60230628-60230647 | MS.gene92406:intron | 20.0% |
| !!! | GAAAATTATATTTTGTTGTG+TGG | - | chr8.4:60230075-60230094 | MS.gene92406:CDS | 20.0% |
| !!! | GAATTAATGATGTAATTTTC+AGG | - | chr8.4:60228561-60228580 | MS.gene92406:CDS | 20.0% |
| !!! | TAGCTAAGAACATTTTTTTT+AGG | + | chr8.4:60229371-60229390 | None:intergenic | 20.0% |
| !!! | TCTTTTAATAGAAATGTTGA+AGG | - | chr8.4:60228834-60228853 | MS.gene92406:intron | 20.0% |
| !!! | TGTTTTTTGGTAGAAAAAAA+AGG | - | chr8.4:60229047-60229066 | MS.gene92406:CDS | 20.0% |
| !!! | TTTATTTATTACCTTTTGCT+AGG | - | chr8.4:60231467-60231486 | MS.gene92406:intron | 20.0% |
| !!! | TTTCATAGATGGAAAATTTT+GGG | + | chr8.4:60229597-60229616 | None:intergenic | 20.0% |
| !!! | TTTTAATCTATCTAATTCCA+TGG | - | chr8.4:60230406-60230425 | MS.gene92406:intron | 20.0% |
| ! | AAAAGAAAAACATCATCATC+TGG | + | chr8.4:60228820-60228839 | None:intergenic | 25.0% |
| ! | AAAATGTATTGCAATATGAC+AGG | - | chr8.4:60229457-60229476 | MS.gene92406:intron | 25.0% |
| ! | AGTTTAAAGAATATGTTAGG+GGG | - | chr8.4:60229950-60229969 | MS.gene92406:CDS | 25.0% |
| ! | ATTATACAACAAAATGAGGT+TGG | + | chr8.4:60231581-60231600 | None:intergenic | 25.0% |
| ! | CAAATGTTGATATATTTAGG+GGG | + | chr8.4:60229535-60229554 | None:intergenic | 25.0% |
| ! | CATTAAAAACTATGAAGGTT+AGG | - | chr8.4:60229868-60229887 | MS.gene92406:intron | 25.0% |
| ! | GATTAACCCAAAAATTAATG+TGG | + | chr8.4:60230605-60230624 | None:intergenic | 25.0% |
| ! | TAAAATAAATCAGAATGCAG+TGG | - | chr8.4:60230123-60230142 | MS.gene92406:intron | 25.0% |
| ! | TCTATATACACTTAATGGTA+GGG | + | chr8.4:60230900-60230919 | None:intergenic | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | - | chr8.4:60231223-60231242 | MS.gene92406:intron | 25.0% |
| ! | TTCTATATACACTTAATGGT+AGG | + | chr8.4:60230901-60230920 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTAAAAATT+AGG | + | chr8.4:60229626-60229645 | None:intergenic | 25.0% |
| !! | ATAATTTTCCAACTTGTGAT+TGG | + | chr8.4:60230064-60230083 | None:intergenic | 25.0% |
| !! | CATGAGTTGACTAAAAATTA+GGG | + | chr8.4:60229625-60229644 | None:intergenic | 25.0% |
| !! | GAAATCATTGATAACAGTAT+TGG | - | chr8.4:60228599-60228618 | MS.gene92406:intron | 25.0% |
| !! | TGTTAGATTTCAAAGGTTTT+AGG | - | chr8.4:60230979-60230998 | MS.gene92406:intron | 25.0% |
| !! | TTCATAGATGGAAAATTTTG+GGG | + | chr8.4:60229596-60229615 | None:intergenic | 25.0% |
| !!! | AAAAATGTTTTGAGAAACGT+TGG | - | chr8.4:60230792-60230811 | MS.gene92406:intron | 25.0% |
| !!! | AACCTTAGAAATATTTTAGG+AGG | + | chr8.4:60229566-60229585 | None:intergenic | 25.0% |
| !!! | TGTAAAATTTGCTTTTGCAT+AGG | + | chr8.4:60229197-60229216 | None:intergenic | 25.0% |
| AAAATTGAAGAGACTGCTAA+AGG | - | chr8.4:60231791-60231810 | MS.gene92406:intron | 30.0% | |
| AAATTGAAGAGACTGCTAAA+GGG | - | chr8.4:60231792-60231811 | MS.gene92406:intron | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | - | chr8.4:60230202-60230221 | MS.gene92406:intron | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | - | chr8.4:60231281-60231300 | MS.gene92406:intron | 30.0% | |
| AATATACTTGTGGAGTACAA+AGG | + | chr8.4:60231530-60231549 | None:intergenic | 30.0% | |
| ACCTTGCTAAAATATACTTG+TGG | + | chr8.4:60231540-60231559 | None:intergenic | 30.0% | |
| AGAATAAACCAATCACAAGT+TGG | - | chr8.4:60230053-60230072 | MS.gene92406:CDS | 30.0% | |
| ATGAAAAAGTCAACACACAA+GGG | + | chr8.4:60230102-60230121 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | + | chr8.4:60230201-60230220 | None:intergenic | 30.0% | |
| ATGCTAAAATAAAGGCCAAA+TGG | - | chr8.4:60230842-60230861 | MS.gene92406:intron | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | - | chr8.4:60231730-60231749 | MS.gene92406:intron | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | - | chr8.4:60231118-60231137 | MS.gene92406:intron | 30.0% | |
| CTCAATCCATGCTAAAATAA+AGG | - | chr8.4:60230834-60230853 | MS.gene92406:intron | 30.0% | |
| CTTTGTTCCTTCATATCTAT+AGG | + | chr8.4:60231120-60231139 | None:intergenic | 30.0% | |
| GCTGAGTATAACAACTTATA+TGG | - | chr8.4:60231752-60231771 | MS.gene92406:intron | 30.0% | |
| TACATATCATTGTCTAGGTT+TGG | + | chr8.4:60230929-60230948 | None:intergenic | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | + | chr8.4:60230200-60230219 | None:intergenic | 30.0% | |
| TGCTAAAATAAAGGCCAAAT+GGG | - | chr8.4:60230843-60230862 | MS.gene92406:intron | 30.0% | |
| TTAGGGACTAATTTCATAGA+TGG | + | chr8.4:60229608-60229627 | None:intergenic | 30.0% | |
| TTGAGGATGATGAAGTAATA+AGG | - | chr8.4:60231216-60231235 | MS.gene92406:intron | 30.0% | |
| ! | ACGACCATAATTTAAAACCA+TGG | + | chr8.4:60230426-60230445 | None:intergenic | 30.0% |
| ! | CATGAGTTGACTAAAAAGTA+GGG | - | chr8.4:60229891-60229910 | MS.gene92406:intron | 30.0% |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | + | chr8.4:60231189-60231208 | None:intergenic | 30.0% |
| ! | GATAACAGTATTGGGAAAAT+GGG | - | chr8.4:60228608-60228627 | MS.gene92406:intron | 30.0% |
| ! | GTCCTCCTAAAATATTTCTA+AGG | - | chr8.4:60229561-60229580 | MS.gene92406:intron | 30.0% |
| ! | TCATAGATGGAAAATTTTGG+GGG | + | chr8.4:60229595-60229614 | None:intergenic | 30.0% |
| ! | TGATAACAGTATTGGGAAAA+TGG | - | chr8.4:60228607-60228626 | MS.gene92406:intron | 30.0% |
| !! | ATGATGTAATTTTCAGGACA+TGG | - | chr8.4:60228567-60228586 | MS.gene92406:CDS | 30.0% |
| !! | CTTAAAACACTTGATTTGTC+CGG | - | chr8.4:60230676-60230695 | MS.gene92406:intron | 30.0% |
| !! | TGATGTAATTTTCAGGACAT+GGG | - | chr8.4:60228568-60228587 | MS.gene92406:CDS | 30.0% |
| !!! | ATGGTTTTAAATTATGGTCG+TGG | - | chr8.4:60230425-60230444 | MS.gene92406:intron | 30.0% |
| !!! | ATTTGGCCTTTATTTTAGCA+TGG | + | chr8.4:60230843-60230862 | None:intergenic | 30.0% |
| !!! | CAAGTGTTTTAAGAAATGTG+AGG | + | chr8.4:60230669-60230688 | None:intergenic | 30.0% |
| !!! | TCCACAAGTATATTTTAGCA+AGG | - | chr8.4:60231536-60231555 | MS.gene92406:CDS | 30.0% |
| !!! | TGTTTTAAGAAATGTGAGGT+CGG | + | chr8.4:60230665-60230684 | None:intergenic | 30.0% |
| AAGATCTTCAGAGGAACTAT+TGG | - | chr8.4:60230249-60230268 | MS.gene92406:intron | 35.0% | |
| AATGGGATGTCATATTAGGT+TGG | - | chr8.4:60230860-60230879 | MS.gene92406:intron | 35.0% | |
| ACCCAAAAATTAATGTGGGT+CGG | + | chr8.4:60230600-60230619 | None:intergenic | 35.0% | |
| ACCTAATATGACATCCCATT+TGG | + | chr8.4:60230860-60230879 | None:intergenic | 35.0% | |
| ACTTCATCATCCTCAACAAT+TGG | + | chr8.4:60231212-60231231 | None:intergenic | 35.0% | |
| AGATCTTCAGAGGAACTATT+GGG | - | chr8.4:60230250-60230269 | MS.gene92406:intron | 35.0% | |
| AGATGAAACTGCAAAATCAG+AGG | - | chr8.4:60231145-60231164 | MS.gene92406:intron | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | + | chr8.4:60230311-60230330 | None:intergenic | 35.0% | |
| ATCATGAACGCCAATTTCAA+AGG | - | chr8.4:60228685-60228704 | MS.gene92406:intron | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | + | chr8.4:60230306-60230325 | None:intergenic | 35.0% | |
| CACATCTAGATTGTGTAATC+CGG | + | chr8.4:60230698-60230717 | None:intergenic | 35.0% | |
| CATGAAAAAGTCAACACACA+AGG | + | chr8.4:60230103-60230122 | None:intergenic | 35.0% | |
| CTATAAGATTCTCTCTCCAA+GGG | + | chr8.4:60228636-60228655 | None:intergenic | 35.0% | |
| GCTAGGATCTTAATGACTTA+AGG | - | chr8.4:60231484-60231503 | MS.gene92406:intron | 35.0% | |
| GGGGGACTAAAATCAAATAT+TGG | - | chr8.4:60229968-60229987 | MS.gene92406:CDS | 35.0% | |
| GTCATTAAGATCCTAGCAAA+AGG | + | chr8.4:60231481-60231500 | None:intergenic | 35.0% | |
| TAGAGCTGACATTGATATGA+AGG | - | chr8.4:60231721-60231740 | MS.gene92406:intron | 35.0% | |
| TCAAAAGAAGCCAATTGTTG+AGG | - | chr8.4:60231199-60231218 | MS.gene92406:intron | 35.0% | |
| TTACCTTTCTATCATTGCCA+TGG | + | chr8.4:60230339-60230358 | None:intergenic | 35.0% | |
| TTGAGCATTCTTAATGGCAT+TGG | + | chr8.4:60231183-60231202 | None:intergenic | 35.0% | |
| ! | ACATGAGTTTGTGCGTTTTA+AGG | - | chr8.4:60228737-60228756 | MS.gene92406:CDS | 35.0% |
| ! | GAGCTGTTTCAAAAAGCAAT+AGG | + | chr8.4:60231078-60231097 | None:intergenic | 35.0% |
| ! | GCATGAGTTGACTAAAAAGT+AGG | - | chr8.4:60229890-60229909 | MS.gene92406:intron | 35.0% |
| ! | TGAATTTAGCTCAGTTGGTA+CGG | + | chr8.4:60231393-60231412 | None:intergenic | 35.0% |
| !! | GATCATTCCACCTTTGAAAT+TGG | + | chr8.4:60228698-60228717 | None:intergenic | 35.0% |
| !! | GATGTAATTTTCAGGACATG+GGG | - | chr8.4:60228569-60228588 | MS.gene92406:CDS | 35.0% |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | + | chr8.4:60231171-60231190 | None:intergenic | 35.0% |
| !!! | CGCTGTAGTTTTTGATTTTG+CGG | - | chr8.4:60230451-60230470 | MS.gene92406:intron | 35.0% |
| !!! | TTGCTTTTTGAAACAGCTCT+TGG | - | chr8.4:60231079-60231098 | MS.gene92406:intron | 35.0% |
| AGATGCACGTTTAGCAAAAG+AGG | - | chr8.4:60230174-60230193 | MS.gene92406:intron | 40.0% | |
| ATGAACGCCAATTTCAAAGG+TGG | - | chr8.4:60228688-60228707 | MS.gene92406:intron | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | - | chr8.4:60230333-60230352 | MS.gene92406:intron | 40.0% | |
| CCCAAAAATTAATGTGGGTC+GGG | + | chr8.4:60230599-60230618 | None:intergenic | 40.0% | |
| CCTATAAGATTCTCTCTCCA+AGG | + | chr8.4:60228637-60228656 | None:intergenic | 40.0% | |
| CCTTGGAGAGAGAATCTTAT+AGG | - | chr8.4:60228634-60228653 | MS.gene92406:intron | 40.0% | |
| GCCAAATGGGATGTCATATT+AGG | - | chr8.4:60230856-60230875 | MS.gene92406:intron | 40.0% | |
| GCTTTAACTCAAGCTTTCTC+AGG | - | chr8.4:60228415-60228434 | MS.gene92406:CDS | 40.0% | |
| GTGAGTGCCTATAGATATGA+AGG | - | chr8.4:60231110-60231129 | MS.gene92406:intron | 40.0% | |
| TGGAATGGTCAAAGAGAGAA+TGG | + | chr8.4:60230291-60230310 | None:intergenic | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | - | chr8.4:60231298-60231317 | MS.gene92406:intron | 40.0% | |
| TTGCTAACCTTGATTGCTAG+AGG | - | chr8.4:60231830-60231849 | MS.gene92406:CDS | 40.0% | |
| ! | CCCGACCCACATTAATTTTT+GGG | - | chr8.4:60230596-60230615 | MS.gene92406:intron | 40.0% |
| ! | GCAGTCTCTTCAATTTTCTG+AGG | + | chr8.4:60231788-60231807 | None:intergenic | 40.0% |
| ! | TGCAGCATTGAAGATTGATG+TGG | - | chr8.4:60231658-60231677 | MS.gene92406:intron | 40.0% |
| AAACGTGCATCTCTTTCCCA+AGG | + | chr8.4:60230166-60230185 | None:intergenic | 45.0% | |
| AACGTGCATCTCTTTCCCAA+GGG | + | chr8.4:60230165-60230184 | None:intergenic | 45.0% | |
| ATCAGAATGCAGTGGTGCTT+TGG | - | chr8.4:60230131-60230150 | MS.gene92406:intron | 45.0% | |
| ATTGGGAAAATGGGATCCCT+TGG | - | chr8.4:60228617-60228636 | MS.gene92406:intron | 45.0% | |
| CCAACTGAGCTAAATTCACG+AGG | - | chr8.4:60231395-60231414 | MS.gene92406:intron | 45.0% | |
| CTAACCTTGATTGCTAGAGG+AGG | - | chr8.4:60231833-60231852 | MS.gene92406:CDS | 45.0% | |
| GACTGCTAAAGGGAACTACA+AGG | - | chr8.4:60231802-60231821 | MS.gene92406:intron | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | - | chr8.4:60230319-60230338 | MS.gene92406:intron | 45.0% | |
| GCAAAAGAGGCCCTAAAGAA+AGG | - | chr8.4:60230187-60230206 | MS.gene92406:intron | 45.0% | |
| TGCATGCACAAGATCTTCAG+AGG | - | chr8.4:60230240-60230259 | MS.gene92406:intron | 45.0% | |
| TTAGCCTCCTCTAGCAATCA+AGG | + | chr8.4:60231840-60231859 | None:intergenic | 45.0% | |
| ! | CCTCGTGAATTTAGCTCAGT+TGG | + | chr8.4:60231398-60231417 | None:intergenic | 45.0% |
| ! | GCCCGACCCACATTAATTTT+TGG | - | chr8.4:60230595-60230614 | MS.gene92406:intron | 45.0% |
| !! | GTAATTTTCAGGACATGGGG+TGG | - | chr8.4:60228572-60228591 | MS.gene92406:CDS | 45.0% |
| CAGAGGAACTATTGGGAGCT+AGG | - | chr8.4:60230257-60230276 | MS.gene92406:intron | 50.0% | |
| CTAGACCAGCTCGAAGCAAA+CGG | - | chr8.4:60230568-60230587 | MS.gene92406:intron | 50.0% | |
| GGAACTATTGGGAGCTAGGA+AGG | - | chr8.4:60230261-60230280 | MS.gene92406:intron | 50.0% | |
| CAGTTCCGTTTGCTTCGAGC+TGG | + | chr8.4:60230576-60230595 | None:intergenic | 55.0% | |
| !! | GCTTTGGAGCATGCACCCTT+GGG | - | chr8.4:60230147-60230166 | MS.gene92406:intron | 55.0% |
| !! | TGCTTTGGAGCATGCACCCT+TGG | - | chr8.4:60230146-60230165 | MS.gene92406:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60228391 | 60231859 | 60228391 | ID=MS.gene92406 |
| chr8.4 | mRNA | 60228391 | 60231859 | 60228391 | ID=MS.gene92406.t1;Parent=MS.gene92406 |
| chr8.4 | exon | 60231814 | 60231859 | 60231814 | ID=MS.gene92406.t1.exon1;Parent=MS.gene92406.t1 |
| chr8.4 | CDS | 60231814 | 60231859 | 60231814 | ID=cds.MS.gene92406.t1;Parent=MS.gene92406.t1 |
| chr8.4 | exon | 60231492 | 60231667 | 60231492 | ID=MS.gene92406.t1.exon2;Parent=MS.gene92406.t1 |
| chr8.4 | CDS | 60231492 | 60231667 | 60231492 | ID=cds.MS.gene92406.t1;Parent=MS.gene92406.t1 |
| chr8.4 | exon | 60229896 | 60230114 | 60229896 | ID=MS.gene92406.t1.exon3;Parent=MS.gene92406.t1 |
| chr8.4 | CDS | 60229896 | 60230114 | 60229896 | ID=cds.MS.gene92406.t1;Parent=MS.gene92406.t1 |
| chr8.4 | exon | 60228931 | 60229155 | 60228931 | ID=MS.gene92406.t1.exon4;Parent=MS.gene92406.t1 |
| chr8.4 | CDS | 60228931 | 60229155 | 60228931 | ID=cds.MS.gene92406.t1;Parent=MS.gene92406.t1 |
| chr8.4 | exon | 60228693 | 60228761 | 60228693 | ID=MS.gene92406.t1.exon5;Parent=MS.gene92406.t1 |
| chr8.4 | CDS | 60228693 | 60228761 | 60228693 | ID=cds.MS.gene92406.t1;Parent=MS.gene92406.t1 |
| chr8.4 | exon | 60228391 | 60228600 | 60228391 | ID=MS.gene92406.t1.exon6;Parent=MS.gene92406.t1 |
| chr8.4 | CDS | 60228391 | 60228600 | 60228391 | ID=cds.MS.gene92406.t1;Parent=MS.gene92406.t1 |
| Gene Sequence |
| Protein sequence |
