Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056196.t1 | XP_003627775.1 | 98.4 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 6.00E-173 | 616.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056196.t1 | Q9ZVJ6 | 58.8 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 2.4e-98 | 360.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056196.t1 | G7LF83 | 98.4 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 4.3e-173 | 616.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056196 | MS.gene073067 | 0.810712 | 1.01E-50 | -1.69E-46 |
| MS.gene056196 | MS.gene073068 | 0.812717 | 3.68E-51 | -1.69E-46 |
| MS.gene056196 | MS.gene24088 | 0.806188 | 9.29E-50 | -1.69E-46 |
| MS.gene056196 | MS.gene45773 | 0.862115 | 6.37E-64 | -1.69E-46 |
| MS.gene056196 | MS.gene88987 | 0.805239 | 1.47E-49 | -1.69E-46 |
| MS.gene056196 | MS.gene91872 | 0.806757 | 7.04E-50 | -1.69E-46 |
| MS.gene056196 | MS.gene92406 | 0.968361 | 1.44E-128 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056196 | MS.gene45772 | PPI |
| MS.gene056196 | MS.gene92405 | PPI |
| MS.gene056196 | MS.gene016642 | PPI |
| MS.gene056196 | MS.gene056195 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056196.t1 | MTR_8g038170 | 98.408 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| MS.gene056196.t1 | MTR_8g038170 | 98.408 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| MS.gene056196.t1 | MTR_5g063670 | 39.432 | 317 | 165 | 6 | 4 | 311 | 14 | 312 | 1.15e-62 | 201 |
| MS.gene056196.t1 | MTR_8g038150 | 37.423 | 326 | 166 | 9 | 4 | 313 | 14 | 317 | 1.73e-58 | 191 |
| MS.gene056196.t1 | MTR_8g038220 | 38.486 | 317 | 168 | 8 | 5 | 312 | 13 | 311 | 2.29e-58 | 190 |
| MS.gene056196.t1 | MTR_8g038220 | 38.854 | 314 | 165 | 8 | 8 | 312 | 17 | 312 | 1.08e-57 | 188 |
| MS.gene056196.t1 | MTR_3g018780 | 37.539 | 317 | 171 | 8 | 5 | 312 | 14 | 312 | 3.63e-56 | 184 |
| MS.gene056196.t1 | MTR_2g031980 | 36.190 | 315 | 176 | 6 | 5 | 311 | 14 | 311 | 5.22e-54 | 179 |
| MS.gene056196.t1 | MTR_3g018790 | 36.278 | 317 | 175 | 7 | 5 | 312 | 14 | 312 | 5.53e-54 | 179 |
| MS.gene056196.t1 | MTR_8g038180 | 37.107 | 318 | 173 | 8 | 5 | 313 | 14 | 313 | 2.00e-53 | 177 |
| MS.gene056196.t1 | MTR_8g038210 | 37.107 | 318 | 172 | 8 | 4 | 312 | 13 | 311 | 1.21e-50 | 170 |
| MS.gene056196.t1 | MTR_8g038210 | 36.593 | 317 | 173 | 8 | 5 | 312 | 14 | 311 | 5.00e-49 | 166 |
| MS.gene056196.t1 | MTR_0276s0050 | 35.535 | 318 | 178 | 6 | 4 | 312 | 14 | 313 | 4.88e-48 | 163 |
| MS.gene056196.t1 | MTR_3g018790 | 38.776 | 245 | 135 | 5 | 76 | 312 | 21 | 258 | 9.93e-46 | 155 |
| MS.gene056196.t1 | MTR_6g071605 | 31.392 | 309 | 189 | 7 | 10 | 311 | 20 | 312 | 1.69e-36 | 133 |
| MS.gene056196.t1 | MTR_8g107640 | 30.645 | 310 | 190 | 6 | 10 | 311 | 20 | 312 | 2.19e-35 | 130 |
| MS.gene056196.t1 | MTR_1g033560 | 28.931 | 318 | 195 | 7 | 5 | 311 | 15 | 312 | 1.22e-34 | 128 |
| MS.gene056196.t1 | MTR_6g071615 | 31.392 | 309 | 189 | 6 | 10 | 311 | 20 | 312 | 1.16e-33 | 125 |
| MS.gene056196.t1 | MTR_6g071595 | 29.773 | 309 | 194 | 6 | 10 | 311 | 20 | 312 | 4.15e-32 | 122 |
| MS.gene056196.t1 | MTR_1g112520 | 29.450 | 309 | 195 | 6 | 10 | 311 | 20 | 312 | 1.73e-29 | 114 |
| MS.gene056196.t1 | MTR_6g028030 | 26.174 | 298 | 201 | 6 | 24 | 312 | 23 | 310 | 2.15e-25 | 103 |
| MS.gene056196.t1 | MTR_3g018920 | 31.429 | 210 | 96 | 4 | 5 | 213 | 14 | 176 | 3.38e-21 | 89.4 |
| MS.gene056196.t1 | MTR_6g071595 | 25.714 | 245 | 161 | 4 | 10 | 247 | 20 | 250 | 5.75e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056196.t1 | AT2G38750 | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 1.01e-128 | 370 |
| MS.gene056196.t1 | AT2G38750 | 59.333 | 300 | 118 | 3 | 16 | 312 | 2 | 300 | 1.10e-124 | 359 |
| MS.gene056196.t1 | AT1G35720 | 38.438 | 320 | 169 | 7 | 2 | 311 | 12 | 313 | 2.79e-62 | 200 |
| MS.gene056196.t1 | AT5G12380 | 37.421 | 318 | 172 | 6 | 5 | 313 | 14 | 313 | 4.54e-60 | 194 |
| MS.gene056196.t1 | AT5G10230 | 39.683 | 315 | 165 | 7 | 5 | 311 | 15 | 312 | 1.90e-57 | 188 |
| MS.gene056196.t1 | AT5G65020 | 38.095 | 315 | 169 | 6 | 8 | 313 | 18 | 315 | 1.24e-56 | 186 |
| MS.gene056196.t1 | AT5G10220 | 38.679 | 318 | 166 | 9 | 5 | 311 | 15 | 314 | 2.89e-54 | 180 |
| MS.gene056196.t1 | AT5G65020 | 37.338 | 308 | 167 | 6 | 15 | 313 | 10 | 300 | 9.66e-54 | 178 |
| MS.gene056196.t1 | AT2G38760 | 36.646 | 322 | 171 | 8 | 5 | 311 | 15 | 318 | 3.62e-52 | 174 |
| MS.gene056196.t1 | AT1G68090 | 30.351 | 313 | 192 | 8 | 8 | 311 | 18 | 313 | 4.63e-38 | 137 |
| MS.gene056196.t1 | AT1G68090 | 30.364 | 247 | 150 | 6 | 8 | 246 | 18 | 250 | 3.56e-27 | 107 |
Find 58 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATTCCACCTTTGAAAT+TGG | 0.200455 | 8.1:+65586629 | None:intergenic |
| TGATAGCAGTATTGGGAAAA+TGG | 0.220899 | 8.1:-65586717 | MS.gene056196:CDS |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8.1:+65585125 | None:intergenic |
| CTTTGGAGAGAGAAACTTAT+AGG | 0.288403 | 8.1:-65586690 | MS.gene056196:CDS |
| GCTGAGTATAACAACTTATA+TGG | 0.300228 | 8.1:-65583568 | MS.gene056196:CDS |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8.1:+65585126 | None:intergenic |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8.1:-65584039 | MS.gene056196:CDS |
| GCTAGGATCTTAATGACTTA+AGG | 0.319355 | 8.1:-65583836 | MS.gene056196:intron |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8.1:+65584152 | None:intergenic |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8.1:+65584203 | None:intergenic |
| ATCAGAATGCAGTGGTGCTT+TGG | 0.364820 | 8.1:-65585192 | MS.gene056196:intron |
| TTGAGGATGATGAAGTAATA+AGG | 0.375348 | 8.1:-65584104 | MS.gene056196:CDS |
| AAGATCTTCAGAGGAACTAT+TGG | 0.377291 | 8.1:-65585074 | MS.gene056196:CDS |
| ATTGGGAAAATGGGATCCTT+TGG | 0.385637 | 8.1:-65586707 | MS.gene056196:CDS |
| TGCTTTGGAGCATGCACCCT+TGG | 0.391368 | 8.1:-65585177 | MS.gene056196:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8.1:-65583590 | MS.gene056196:CDS |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8.1:-65584097 | MS.gene056196:CDS |
| ACTTCATCATCCTCAACAAT+TGG | 0.409615 | 8.1:+65584111 | None:intergenic |
| GAAATCATTGATAGCAGTAT+TGG | 0.428113 | 8.1:-65586725 | MS.gene056196:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8.1:+65584140 | None:intergenic |
| GCTTTAACTCAAGCTTTCTC+AGG | 0.434534 | 8.1:-65586910 | MS.gene056196:intron |
| TTACCTTTCTATCATTGCCA+TGG | 0.452976 | 8.1:+65584987 | None:intergenic |
| AAATCATTGATAGCAGTATT+GGG | 0.456697 | 8.1:-65586724 | MS.gene056196:CDS |
| CAGAGGAACTATTGGGAGCT+AGG | 0.463248 | 8.1:-65585066 | MS.gene056196:CDS |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8.1:-65585121 | MS.gene056196:CDS |
| GATAGCAGTATTGGGAAAAT+GGG | 0.474695 | 8.1:-65586716 | MS.gene056196:CDS |
| AAAATTGAAGAGACTGCTAA+AGG | 0.486337 | 8.1:-65583529 | MS.gene056196:CDS |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8.1:+65585015 | None:intergenic |
| AGATCTTCAGAGGAACTATT+GGG | 0.492249 | 8.1:-65585073 | MS.gene056196:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.496277 | 8.1:-65584990 | MS.gene056196:intron |
| TTAGCCTCCTCTAGCAATCA+AGG | 0.503479 | 8.1:+65583483 | None:intergenic |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8.1:-65583599 | MS.gene056196:CDS |
| AGATGCACGTTTAGCAAAAG+AGG | 0.507874 | 8.1:-65585149 | MS.gene056196:CDS |
| TGGAATGGTCAAAGAGAGAA+TGG | 0.508195 | 8.1:+65585035 | None:intergenic |
| GCAAAAGAGGCCCTAAAGAA+AGG | 0.511238 | 8.1:-65585136 | MS.gene056196:CDS |
| GCTTTGGAGCATGCACCCTT+GGG | 0.524661 | 8.1:-65585176 | MS.gene056196:CDS |
| AAATTGAAGAGACTGCTAAA+GGG | 0.525725 | 8.1:-65583528 | MS.gene056196:CDS |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8.1:-65584210 | MS.gene056196:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8.1:+65585020 | None:intergenic |
| GGAACTATTGGGAGCTAGGA+AGG | 0.530013 | 8.1:-65585062 | MS.gene056196:CDS |
| TTGCTAACCTTGATTGCTAG+AGG | 0.531913 | 8.1:-65583490 | MS.gene056196:CDS |
| AAACGTGCATCTCTTTCCCA+AGG | 0.568596 | 8.1:+65585160 | None:intergenic |
| CTATAAGTTTCTCTCTCCAA+AGG | 0.571276 | 8.1:+65586691 | None:intergenic |
| AATATACTTGTGGAGTACAA+AGG | 0.574763 | 8.1:+65583793 | None:intergenic |
| ATCATGAACGCCAATTTCAA+AGG | 0.576589 | 8.1:-65586639 | MS.gene056196:CDS |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8.1:-65585004 | MS.gene056196:CDS |
| ACCTTGCTAAAATATACTTG+TGG | 0.592183 | 8.1:+65583783 | None:intergenic |
| ATGAACGCCAATTTCAAAGG+TGG | 0.604776 | 8.1:-65586636 | MS.gene056196:CDS |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8.1:-65584022 | MS.gene056196:intron |
| GACTGCTAAAGGGAACTACA+AGG | 0.615438 | 8.1:-65583518 | MS.gene056196:CDS |
| TCAAAAGAAGCCAATTGTTG+AGG | 0.621583 | 8.1:-65584121 | MS.gene056196:CDS |
| TAAAATAAATCAGAATGCAG+TGG | 0.621993 | 8.1:-65585200 | MS.gene056196:intron |
| AGATGAAACTGCAAAATCAG+AGG | 0.624947 | 8.1:-65584175 | MS.gene056196:CDS |
| CTAACCTTGATTGCTAGAGG+AGG | 0.643976 | 8.1:-65583487 | MS.gene056196:CDS |
| TGCATGCACAAGATCTTCAG+AGG | 0.650638 | 8.1:-65585083 | MS.gene056196:CDS |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8.1:-65584202 | MS.gene056196:CDS |
| AACGTGCATCTCTTTCCCAA+GGG | 0.668764 | 8.1:+65585161 | None:intergenic |
| TGCAGCATTGAAGATTGATG+TGG | 0.671356 | 8.1:-65583662 | MS.gene056196:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCATTAAAATTTATGA+TGG | + | chr8.1:65584743-65584762 | None:intergenic | 10.0% |
| !! | TATGTAGTAATAATTTAATA+TGG | + | chr8.1:65583554-65583573 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTGTTTTT+AGG | - | chr8.1:65584899-65584918 | MS.gene056196:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr8.1:65584841-65584860 | MS.gene056196:intron | 10.0% |
| !!! | AATTTTCTTCTTAATTATAA+GGG | + | chr8.1:65585117-65585136 | None:intergenic | 10.0% |
| !!! | GATTATTTTTTTTAAGTTTA+AGG | + | chr8.1:65584366-65584385 | None:intergenic | 10.0% |
| !!! | TATATTTTCTTATTTGAAAA+TGG | - | chr8.1:65583950-65583969 | MS.gene056196:intron | 10.0% |
| !! | AAAAGTTTAAAGAATATGTT+AGG | - | chr8.1:65585041-65585060 | MS.gene056196:CDS | 15.0% |
| !! | AAAGTTTAAAGAATATGTTA+GGG | - | chr8.1:65585042-65585061 | MS.gene056196:CDS | 15.0% |
| !! | AATCAAATGTTGATATATTT+AGG | + | chr8.1:65584628-65584647 | None:intergenic | 15.0% |
| !! | AATTTCATTAAAAACTATGA+AGG | - | chr8.1:65584957-65584976 | MS.gene056196:intron | 15.0% |
| !! | ATCAAATATTGGTATATTTA+AGG | - | chr8.1:65585073-65585092 | MS.gene056196:CDS | 15.0% |
| !! | ATCAAATGTTGATATATTTA+GGG | + | chr8.1:65584627-65584646 | None:intergenic | 15.0% |
| !! | ATTAGAGTTTAATAAGTAAA+TGG | - | chr8.1:65584598-65584617 | MS.gene056196:intron | 15.0% |
| !! | GTGAATTAGTATTATTTATA+TGG | - | chr8.1:65586098-65586117 | MS.gene056196:intron | 15.0% |
| !! | TAATGAAATTTACTAGAAAT+GGG | - | chr8.1:65584753-65584772 | MS.gene056196:intron | 15.0% |
| !! | TCAAATATTGGTATATTTAA+GGG | - | chr8.1:65585074-65585093 | MS.gene056196:CDS | 15.0% |
| !! | TGTTACATGAAAAAAAAAAA+TGG | + | chr8.1:65585826-65585845 | None:intergenic | 15.0% |
| !! | TTAATGAAATTTACTAGAAA+TGG | - | chr8.1:65584752-65584771 | MS.gene056196:intron | 15.0% |
| !!! | AAAAACCTTAGAAATATTTT+AGG | + | chr8.1:65584659-65584678 | None:intergenic | 15.0% |
| !!! | AATAAAAAGGATATGTTTTT+TGG | - | chr8.1:65584125-65584144 | MS.gene056196:CDS | 15.0% |
| !!! | AATTTTGATTAAACATATGA+AGG | - | chr8.1:65584008-65584027 | MS.gene056196:intron | 15.0% |
| !!! | ATGACTTTTACAAAATAAAA+AGG | - | chr8.1:65584112-65584131 | MS.gene056196:CDS | 15.0% |
| !!! | ATTCTAATTTTGTTTTTGAT+TGG | + | chr8.1:65584800-65584819 | None:intergenic | 15.0% |
| !!! | GAATTTTCTTCTTAATTATA+AGG | + | chr8.1:65585118-65585137 | None:intergenic | 15.0% |
| !!! | TAAAATATTTCTAAGGTTTT+TGG | - | chr8.1:65584658-65584677 | MS.gene056196:intron | 15.0% |
| !!! | TAACATATTCTTTAAACTTT+TGG | + | chr8.1:65585042-65585061 | None:intergenic | 15.0% |
| !!! | TATTTTCTATATACACTTAA+TGG | + | chr8.1:65586002-65586021 | None:intergenic | 15.0% |
| !!! | TCATATATGAAAAATTTTGA+AGG | - | chr8.1:65585015-65585034 | MS.gene056196:CDS | 15.0% |
| !!! | TCTCAAAACATTTTTTTTTT+TGG | + | chr8.1:65585884-65585903 | None:intergenic | 15.0% |
| !!! | TGCATTTTTTTTTTGTATAT+AGG | - | chr8.1:65586725-65586744 | MS.gene056196:CDS | 15.0% |
| !!! | TGTTCAAAAAAATTTAAGAT+AGG | + | chr8.1:65584169-65584188 | None:intergenic | 15.0% |
| !!! | TTTTAAGAATTCTTTTTGTT+TGG | + | chr8.1:65584064-65584083 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCATGTAACAATA+TGG | - | chr8.1:65585829-65585848 | MS.gene056196:intron | 15.0% |
| !!! | TTTTTTTTGTATATAGGTTT+TGG | - | chr8.1:65586731-65586750 | MS.gene056196:CDS | 15.0% |
| !! | AAGTTTAAAGAATATGTTAG+GGG | - | chr8.1:65585043-65585062 | MS.gene056196:CDS | 20.0% |
| !! | AATTTCATAAGTCATATGTT+TGG | + | chr8.1:65586527-65586546 | None:intergenic | 20.0% |
| !! | ATAAGGGTTAAATAAGTAAA+TGG | + | chr8.1:65585101-65585120 | None:intergenic | 20.0% |
| !! | ATTAACCCAAAAATTAATGT+GGG | + | chr8.1:65585699-65585718 | None:intergenic | 20.0% |
| !! | ATTCATCAAATATCATCAAT+TGG | + | chr8.1:65583638-65583657 | None:intergenic | 20.0% |
| !! | TCAAATGTTGATATATTTAG+GGG | + | chr8.1:65584626-65584645 | None:intergenic | 20.0% |
| !! | TGTTATTATACAACAAAATG+AGG | + | chr8.1:65586682-65586701 | None:intergenic | 20.0% |
| !! | TTATGAATGTTAGATTTCAA+AGG | - | chr8.1:65586069-65586088 | MS.gene056196:intron | 20.0% |
| !! | TTCATCAAATATCATCAATT+GGG | + | chr8.1:65583637-65583656 | None:intergenic | 20.0% |
| !!! | ACATTAATTTTTGGGTTAAT+CGG | - | chr8.1:65585699-65585718 | MS.gene056196:intron | 20.0% |
| !!! | ACATTTTTTTTAGGGAATAA+TGG | + | chr8.1:65584452-65584471 | None:intergenic | 20.0% |
| !!! | AGCTAAGAACATTTTTTTTA+GGG | + | chr8.1:65584460-65584479 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTGGTAGAAAAAA+AGG | - | chr8.1:65584137-65584156 | MS.gene056196:CDS | 20.0% |
| !!! | ATTTCATAGATGGAAAATTT+TGG | + | chr8.1:65584688-65584707 | None:intergenic | 20.0% |
| !!! | CTAGACTAAAAATTGATTTT+TGG | - | chr8.1:65585723-65585742 | MS.gene056196:intron | 20.0% |
| !!! | GAAAATTATATTTTGTTGTG+TGG | - | chr8.1:65585169-65585188 | MS.gene056196:CDS | 20.0% |
| !!! | GAATTAATGATGTAATTTTC+AGG | - | chr8.1:65583654-65583673 | MS.gene056196:CDS | 20.0% |
| !!! | TAGCTAAGAACATTTTTTTT+AGG | + | chr8.1:65584461-65584480 | None:intergenic | 20.0% |
| !!! | TCTTTTAATAGAAATGTTGA+AGG | - | chr8.1:65583927-65583946 | MS.gene056196:intron | 20.0% |
| !!! | TTTATTTATTACCTTTTGCT+AGG | - | chr8.1:65586564-65586583 | MS.gene056196:intron | 20.0% |
| !!! | TTTCATAGATGGAAAATTTT+GGG | + | chr8.1:65584687-65584706 | None:intergenic | 20.0% |
| !!! | TTTTAATCTATCTAATTCCA+TGG | - | chr8.1:65585500-65585519 | MS.gene056196:intron | 20.0% |
| ! | AAAAGAAAAACATCATCATC+TGG | + | chr8.1:65583913-65583932 | None:intergenic | 25.0% |
| ! | AAAATGTATTGCAATATGAC+AGG | - | chr8.1:65584547-65584566 | MS.gene056196:intron | 25.0% |
| ! | AGTTTAAAGAATATGTTAGG+GGG | - | chr8.1:65585044-65585063 | MS.gene056196:CDS | 25.0% |
| ! | ATATTTACATATCAGTGTCT+AGG | + | chr8.1:65586031-65586050 | None:intergenic | 25.0% |
| ! | ATTATACAACAAAATGAGGT+TGG | + | chr8.1:65586678-65586697 | None:intergenic | 25.0% |
| ! | CAAATGTTGATATATTTAGG+GGG | + | chr8.1:65584625-65584644 | None:intergenic | 25.0% |
| ! | CATTAAAAACTATGAAGGTT+AGG | - | chr8.1:65584962-65584981 | MS.gene056196:intron | 25.0% |
| ! | GATTAACCCAAAAATTAATG+TGG | + | chr8.1:65585700-65585719 | None:intergenic | 25.0% |
| ! | TAAAATAAATCAGAATGCAG+TGG | - | chr8.1:65585217-65585236 | MS.gene056196:intron | 25.0% |
| ! | TCTATATACACTTAATGGTA+GGG | + | chr8.1:65585997-65586016 | None:intergenic | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | - | chr8.1:65586320-65586339 | MS.gene056196:intron | 25.0% |
| ! | TTCTATATACACTTAATGGT+AGG | + | chr8.1:65585998-65586017 | None:intergenic | 25.0% |
| !! | AAATCATTGATAGCAGTATT+GGG | - | chr8.1:65583693-65583712 | MS.gene056196:intron | 25.0% |
| !! | ACATGAGTTGACTAAAAATT+AGG | + | chr8.1:65584716-65584735 | None:intergenic | 25.0% |
| !! | ACGATCATAATTTAAAACCA+TGG | + | chr8.1:65585520-65585539 | None:intergenic | 25.0% |
| !! | ATAATTTTCCAACTTGTGAT+TGG | + | chr8.1:65585158-65585177 | None:intergenic | 25.0% |
| !! | CATGAGTTGACTAAAAATTA+GGG | + | chr8.1:65584715-65584734 | None:intergenic | 25.0% |
| !! | TGTTAGATTTCAAAGGTTTT+AGG | - | chr8.1:65586076-65586095 | MS.gene056196:intron | 25.0% |
| !! | TTCATAGATGGAAAATTTTG+GGG | + | chr8.1:65584686-65584705 | None:intergenic | 25.0% |
| !!! | AAAAATGTTTTGAGAAACGT+TGG | - | chr8.1:65585889-65585908 | MS.gene056196:intron | 25.0% |
| !!! | AACCTTAGAAATATTTTAGG+AGG | + | chr8.1:65584656-65584675 | None:intergenic | 25.0% |
| !!! | AATTGAGAGATTGATTTTCA+CGG | - | chr8.1:65583887-65583906 | MS.gene056196:intron | 25.0% |
| !!! | ATGGTTTTAAATTATGATCG+TGG | - | chr8.1:65585519-65585538 | MS.gene056196:intron | 25.0% |
| !!! | TGTAAAATTTGCTTTTGCAT+AGG | + | chr8.1:65584287-65584306 | None:intergenic | 25.0% |
| AAAATTGAAGAGACTGCTAA+AGG | - | chr8.1:65586888-65586907 | MS.gene056196:intron | 30.0% | |
| AAATTGAAGAGACTGCTAAA+GGG | - | chr8.1:65586889-65586908 | MS.gene056196:intron | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | - | chr8.1:65585296-65585315 | MS.gene056196:intron | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | - | chr8.1:65586378-65586397 | MS.gene056196:intron | 30.0% | |
| AATATACTTGTGGAGTACAA+AGG | + | chr8.1:65586627-65586646 | None:intergenic | 30.0% | |
| ACCTTGCTAAAATATACTTG+TGG | + | chr8.1:65586637-65586656 | None:intergenic | 30.0% | |
| AGAATAAACCAATCACAAGT+TGG | - | chr8.1:65585147-65585166 | MS.gene056196:CDS | 30.0% | |
| ATGAAAAAGTCAACACACAA+GGG | + | chr8.1:65585196-65585215 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | + | chr8.1:65585295-65585314 | None:intergenic | 30.0% | |
| ATGCTAAAATAAAGGCCAAA+TGG | - | chr8.1:65585939-65585958 | MS.gene056196:intron | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | - | chr8.1:65586827-65586846 | MS.gene056196:intron | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | - | chr8.1:65586215-65586234 | MS.gene056196:intron | 30.0% | |
| CTCAATCCATGCTAAAATAA+AGG | - | chr8.1:65585931-65585950 | MS.gene056196:intron | 30.0% | |
| CTTTGTTCCTTCATATCTAT+AGG | + | chr8.1:65586217-65586236 | None:intergenic | 30.0% | |
| GCTGAGTATAACAACTTATA+TGG | - | chr8.1:65586849-65586868 | MS.gene056196:intron | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | + | chr8.1:65585294-65585313 | None:intergenic | 30.0% | |
| TGCTAAAATAAAGGCCAAAT+GGG | - | chr8.1:65585940-65585959 | MS.gene056196:intron | 30.0% | |
| TTAGGGACTAATTTCATAGA+TGG | + | chr8.1:65584698-65584717 | None:intergenic | 30.0% | |
| TTGAGGATGATGAAGTAATA+AGG | - | chr8.1:65586313-65586332 | MS.gene056196:intron | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+GGG | - | chr8.1:65584985-65585004 | MS.gene056196:intron | 30.0% |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | + | chr8.1:65586286-65586305 | None:intergenic | 30.0% |
| ! | GAAATCATTGATAGCAGTAT+TGG | - | chr8.1:65583692-65583711 | MS.gene056196:intron | 30.0% |
| ! | GTCCTCCTAAAATATTTCTA+AGG | - | chr8.1:65584651-65584670 | MS.gene056196:intron | 30.0% |
| ! | TCATAGATGGAAAATTTTGG+GGG | + | chr8.1:65584685-65584704 | None:intergenic | 30.0% |
| !! | ATGATGTAATTTTCAGGACA+TGG | - | chr8.1:65583660-65583679 | MS.gene056196:CDS | 30.0% |
| !! | CTTAAAACACTTGATTTGTC+CGG | - | chr8.1:65585771-65585790 | MS.gene056196:intron | 30.0% |
| !! | TGATGTAATTTTCAGGACAT+GGG | - | chr8.1:65583661-65583680 | MS.gene056196:CDS | 30.0% |
| !!! | ATTTGGCCTTTATTTTAGCA+TGG | + | chr8.1:65585940-65585959 | None:intergenic | 30.0% |
| !!! | CAAGTGTTTTAAGAAATGTG+AGG | + | chr8.1:65585764-65585783 | None:intergenic | 30.0% |
| !!! | TCCACAAGTATATTTTAGCA+AGG | - | chr8.1:65586633-65586652 | MS.gene056196:CDS | 30.0% |
| !!! | TGTTTTAAGAAATGTGAGGT+CGG | + | chr8.1:65585760-65585779 | None:intergenic | 30.0% |
| AAGATCTTCAGAGGAACTAT+TGG | - | chr8.1:65585343-65585362 | MS.gene056196:intron | 35.0% | |
| AATGGGATGTCATATTAGGT+TGG | - | chr8.1:65585957-65585976 | MS.gene056196:intron | 35.0% | |
| ACCCAAAAATTAATGTGGGT+CGG | + | chr8.1:65585695-65585714 | None:intergenic | 35.0% | |
| ACCTAATATGACATCCCATT+TGG | + | chr8.1:65585957-65585976 | None:intergenic | 35.0% | |
| ACTTCATCATCCTCAACAAT+TGG | + | chr8.1:65586309-65586328 | None:intergenic | 35.0% | |
| AGATCTTCAGAGGAACTATT+GGG | - | chr8.1:65585344-65585363 | MS.gene056196:intron | 35.0% | |
| AGATGAAACTGCAAAATCAG+AGG | - | chr8.1:65586242-65586261 | MS.gene056196:intron | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | + | chr8.1:65585405-65585424 | None:intergenic | 35.0% | |
| ATCATGAACGCCAATTTCAA+AGG | - | chr8.1:65583778-65583797 | MS.gene056196:intron | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | + | chr8.1:65585400-65585419 | None:intergenic | 35.0% | |
| CACATCTAGATTGTGTAATC+CGG | + | chr8.1:65585793-65585812 | None:intergenic | 35.0% | |
| CATGAAAAAGTCAACACACA+AGG | + | chr8.1:65585197-65585216 | None:intergenic | 35.0% | |
| CTATAAGTTTCTCTCTCCAA+AGG | + | chr8.1:65583729-65583748 | None:intergenic | 35.0% | |
| GCTAGGATCTTAATGACTTA+AGG | - | chr8.1:65586581-65586600 | MS.gene056196:intron | 35.0% | |
| GGGGGACTAAAATCAAATAT+TGG | - | chr8.1:65585062-65585081 | MS.gene056196:CDS | 35.0% | |
| GTCATTAAGATCCTAGCAAA+AGG | + | chr8.1:65586578-65586597 | None:intergenic | 35.0% | |
| TACATATCAGTGTCTAGGTT+TGG | + | chr8.1:65586026-65586045 | None:intergenic | 35.0% | |
| TAGAGCTGACATTGATATGA+AGG | - | chr8.1:65586818-65586837 | MS.gene056196:intron | 35.0% | |
| TCAAAAGAAGCCAATTGTTG+AGG | - | chr8.1:65586296-65586315 | MS.gene056196:intron | 35.0% | |
| TTACCTTTCTATCATTGCCA+TGG | + | chr8.1:65585433-65585452 | None:intergenic | 35.0% | |
| TTGAGCATTCTTAATGGCAT+TGG | + | chr8.1:65586280-65586299 | None:intergenic | 35.0% | |
| ! | ACATGAGTTTGTGCGTTTTA+AGG | - | chr8.1:65583830-65583849 | MS.gene056196:CDS | 35.0% |
| ! | CTTTGGAGAGAGAAACTTAT+AGG | - | chr8.1:65583727-65583746 | MS.gene056196:intron | 35.0% |
| ! | GAGCTGTTTCAAAAAGCAAT+AGG | + | chr8.1:65586175-65586194 | None:intergenic | 35.0% |
| ! | GATAGCAGTATTGGGAAAAT+GGG | - | chr8.1:65583701-65583720 | MS.gene056196:intron | 35.0% |
| ! | GCATGAGTTGACTAAAAAGT+AGG | - | chr8.1:65584984-65585003 | MS.gene056196:intron | 35.0% |
| ! | TGAATTTAGCTCAGTTGGTA+CGG | + | chr8.1:65586490-65586509 | None:intergenic | 35.0% |
| ! | TGATAGCAGTATTGGGAAAA+TGG | - | chr8.1:65583700-65583719 | MS.gene056196:intron | 35.0% |
| !! | GATCATTCCACCTTTGAAAT+TGG | + | chr8.1:65583791-65583810 | None:intergenic | 35.0% |
| !! | GATGTAATTTTCAGGACATG+GGG | - | chr8.1:65583662-65583681 | MS.gene056196:CDS | 35.0% |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | + | chr8.1:65586268-65586287 | None:intergenic | 35.0% |
| !!! | CGCTGTAGTTTTTGATTTTG+CGG | - | chr8.1:65585545-65585564 | MS.gene056196:intron | 35.0% |
| !!! | TTGCTTTTTGAAACAGCTCT+TGG | - | chr8.1:65586176-65586195 | MS.gene056196:intron | 35.0% |
| AGATGCACGTTTAGCAAAAG+AGG | - | chr8.1:65585268-65585287 | MS.gene056196:intron | 40.0% | |
| ATGAACGCCAATTTCAAAGG+TGG | - | chr8.1:65583781-65583800 | MS.gene056196:intron | 40.0% | |
| ATTGGGAAAATGGGATCCTT+TGG | - | chr8.1:65583710-65583729 | MS.gene056196:intron | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | - | chr8.1:65585427-65585446 | MS.gene056196:intron | 40.0% | |
| CCCAAAAATTAATGTGGGTC+GGG | + | chr8.1:65585694-65585713 | None:intergenic | 40.0% | |
| GCCAAATGGGATGTCATATT+AGG | - | chr8.1:65585953-65585972 | MS.gene056196:intron | 40.0% | |
| GCTTTAACTCAAGCTTTCTC+AGG | - | chr8.1:65583507-65583526 | MS.gene056196:CDS | 40.0% | |
| GTGAGTGCCTATAGATATGA+AGG | - | chr8.1:65586207-65586226 | MS.gene056196:intron | 40.0% | |
| TGGAATGGTCAAAGAGAGAA+TGG | + | chr8.1:65585385-65585404 | None:intergenic | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | - | chr8.1:65586395-65586414 | MS.gene056196:intron | 40.0% | |
| TTGCTAACCTTGATTGCTAG+AGG | - | chr8.1:65586927-65586946 | MS.gene056196:CDS | 40.0% | |
| ! | CCCGACCCACATTAATTTTT+GGG | - | chr8.1:65585691-65585710 | MS.gene056196:intron | 40.0% |
| ! | GCAGTCTCTTCAATTTTCTG+AGG | + | chr8.1:65586885-65586904 | None:intergenic | 40.0% |
| ! | TGCAGCATTGAAGATTGATG+TGG | - | chr8.1:65586755-65586774 | MS.gene056196:intron | 40.0% |
| AAACGTGCATCTCTTTCCCA+AGG | + | chr8.1:65585260-65585279 | None:intergenic | 45.0% | |
| AACGTGCATCTCTTTCCCAA+GGG | + | chr8.1:65585259-65585278 | None:intergenic | 45.0% | |
| ATCAGAATGCAGTGGTGCTT+TGG | - | chr8.1:65585225-65585244 | MS.gene056196:intron | 45.0% | |
| CCAACTGAGCTAAATTCACG+AGG | - | chr8.1:65586492-65586511 | MS.gene056196:intron | 45.0% | |
| CTAACCTTGATTGCTAGAGG+AGG | - | chr8.1:65586930-65586949 | MS.gene056196:CDS | 45.0% | |
| CTAGATCAGCTCGAAGCAAA+CGG | - | chr8.1:65585663-65585682 | MS.gene056196:intron | 45.0% | |
| GACTGCTAAAGGGAACTACA+AGG | - | chr8.1:65586899-65586918 | MS.gene056196:intron | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | - | chr8.1:65585413-65585432 | MS.gene056196:intron | 45.0% | |
| GCAAAAGAGGCCCTAAAGAA+AGG | - | chr8.1:65585281-65585300 | MS.gene056196:intron | 45.0% | |
| TGCATGCACAAGATCTTCAG+AGG | - | chr8.1:65585334-65585353 | MS.gene056196:intron | 45.0% | |
| TTAGCCTCCTCTAGCAATCA+AGG | + | chr8.1:65586937-65586956 | None:intergenic | 45.0% | |
| ! | CCTCGTGAATTTAGCTCAGT+TGG | + | chr8.1:65586495-65586514 | None:intergenic | 45.0% |
| ! | GCCCGACCCACATTAATTTT+TGG | - | chr8.1:65585690-65585709 | MS.gene056196:intron | 45.0% |
| !! | GTAATTTTCAGGACATGGGG+TGG | - | chr8.1:65583665-65583684 | MS.gene056196:CDS | 45.0% |
| CAGAGGAACTATTGGGAGCT+AGG | - | chr8.1:65585351-65585370 | MS.gene056196:intron | 50.0% | |
| GGAACTATTGGGAGCTAGGA+AGG | - | chr8.1:65585355-65585374 | MS.gene056196:intron | 50.0% | |
| !! | GCTTTGGAGCATGCACCCTT+GGG | - | chr8.1:65585241-65585260 | MS.gene056196:intron | 55.0% |
| !! | TGCTTTGGAGCATGCACCCT+TGG | - | chr8.1:65585240-65585259 | MS.gene056196:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 65583483 | 65586956 | 65583483 | ID=MS.gene056196 |
| chr8.1 | mRNA | 65583483 | 65586956 | 65583483 | ID=MS.gene056196.t1;Parent=MS.gene056196 |
| chr8.1 | exon | 65586911 | 65586956 | 65586911 | ID=MS.gene056196.t1.exon1;Parent=MS.gene056196.t1 |
| chr8.1 | CDS | 65586911 | 65586956 | 65586911 | ID=cds.MS.gene056196.t1;Parent=MS.gene056196.t1 |
| chr8.1 | exon | 65586588 | 65586763 | 65586588 | ID=MS.gene056196.t1.exon2;Parent=MS.gene056196.t1 |
| chr8.1 | CDS | 65586588 | 65586763 | 65586588 | ID=cds.MS.gene056196.t1;Parent=MS.gene056196.t1 |
| chr8.1 | exon | 65584991 | 65585209 | 65584991 | ID=MS.gene056196.t1.exon3;Parent=MS.gene056196.t1 |
| chr8.1 | CDS | 65584991 | 65585209 | 65584991 | ID=cds.MS.gene056196.t1;Parent=MS.gene056196.t1 |
| chr8.1 | exon | 65584023 | 65584247 | 65584023 | ID=MS.gene056196.t1.exon4;Parent=MS.gene056196.t1 |
| chr8.1 | CDS | 65584023 | 65584247 | 65584023 | ID=cds.MS.gene056196.t1;Parent=MS.gene056196.t1 |
| chr8.1 | exon | 65583785 | 65583853 | 65583785 | ID=MS.gene056196.t1.exon5;Parent=MS.gene056196.t1 |
| chr8.1 | CDS | 65583785 | 65583853 | 65583785 | ID=cds.MS.gene056196.t1;Parent=MS.gene056196.t1 |
| chr8.1 | exon | 65583483 | 65583692 | 65583483 | ID=MS.gene056196.t1.exon6;Parent=MS.gene056196.t1 |
| chr8.1 | CDS | 65583483 | 65583692 | 65583483 | ID=cds.MS.gene056196.t1;Parent=MS.gene056196.t1 |
| Gene Sequence |
| Protein sequence |
