Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92495.t1 | XP_003621746.2 | 96.3 | 383 | 13 | 1 | 1 | 382 | 1 | 383 | 3.30E-189 | 671 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92495.t1 | Q5XV40 | 34.9 | 395 | 207 | 15 | 1 | 382 | 1 | 358 | 2.3e-34 | 147.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92495.t1 | G7KUR7 | 96.3 | 383 | 13 | 1 | 1 | 382 | 1 | 383 | 2.3e-189 | 671.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050137 | MS.gene92495 | 0.806657 | 7.39E-50 | -1.69E-46 |
| MS.gene050563 | MS.gene92495 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene050585 | MS.gene92495 | 0.808685 | 2.74E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene92495 | 0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene052698 | MS.gene92495 | 0.815916 | 7.24E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene92495 | 0.816365 | 5.74E-52 | -1.69E-46 |
| MS.gene055359 | MS.gene92495 | 0.808332 | 3.26E-50 | -1.69E-46 |
| MS.gene056005 | MS.gene92495 | 0.800985 | 1.11E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene92495 | 0.823275 | 1.51E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92495.t1 | MTR_7g022360 | 96.606 | 383 | 12 | 1 | 1 | 382 | 1 | 383 | 0.0 | 764 |
| MS.gene92495.t1 | MTR_3g085710 | 45.305 | 426 | 134 | 19 | 1 | 382 | 1 | 371 | 1.48e-82 | 256 |
| MS.gene92495.t1 | MTR_7g028590 | 35.411 | 401 | 181 | 20 | 1 | 382 | 1 | 342 | 4.38e-48 | 166 |
| MS.gene92495.t1 | MTR_7g028590 | 34.769 | 325 | 152 | 17 | 1 | 318 | 1 | 272 | 7.98e-35 | 129 |
| MS.gene92495.t1 | MTR_7g028590 | 35.821 | 268 | 113 | 14 | 136 | 381 | 5 | 235 | 3.65e-25 | 102 |
| MS.gene92495.t1 | MTR_7g028350 | 28.212 | 397 | 178 | 15 | 24 | 382 | 1 | 328 | 3.26e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92495.t1 | AT5G14090 | 35.696 | 395 | 204 | 15 | 1 | 382 | 1 | 358 | 7.05e-47 | 164 |
| MS.gene92495.t1 | AT5G14090 | 39.130 | 253 | 125 | 9 | 1 | 252 | 1 | 225 | 4.16e-38 | 139 |
Find 53 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCCAACTGTTGAACTTTC+TGG | 0.088870 | 7.3:+77295715 | None:intergenic |
| AATTCTTGCAATTGTCTATC+AGG | 0.239515 | 7.3:-77297052 | MS.gene92495:CDS |
| TTGGCTGATGAGATTTCTTT+TGG | 0.260026 | 7.3:-77296392 | MS.gene92495:CDS |
| GTTGATGGATTTGATGAAAT+TGG | 0.270523 | 7.3:+77296800 | None:intergenic |
| TTCCCTGGCTTCCTTGCAAT+TGG | 0.280658 | 7.3:-77296842 | MS.gene92495:CDS |
| GAAGAACATGAAGAAGAATA+TGG | 0.306054 | 7.3:-77296902 | MS.gene92495:CDS |
| TTGAATCTGATTCCAAGATT+TGG | 0.307455 | 7.3:+77296989 | None:intergenic |
| TAAGAAGATGAATCTTCTTC+TGG | 0.308740 | 7.3:+77295610 | None:intergenic |
| TACAGAACCATTCAAAGATT+TGG | 0.321359 | 7.3:-77298082 | MS.gene92495:CDS |
| CCTTTACAAGGTTATTTGTT+TGG | 0.326980 | 7.3:-77296506 | MS.gene92495:CDS |
| GATGAGTTAGAGAAAGTTCT+TGG | 0.327038 | 7.3:-77296692 | MS.gene92495:CDS |
| TTTGTGTCTGTTCCTTCAAT+TGG | 0.329555 | 7.3:+77296539 | None:intergenic |
| CCATTCAAAGATTTGGTCAT+TGG | 0.344166 | 7.3:-77298075 | MS.gene92495:intron |
| AACTTCAGAAAATCATTTGC+TGG | 0.355575 | 7.3:-77296941 | MS.gene92495:CDS |
| GAAGTATTCTGCTTTGAATA+TGG | 0.365437 | 7.3:-77296321 | MS.gene92495:CDS |
| TCAACAGTTGGGCACAAATC+TGG | 0.368639 | 7.3:-77295706 | MS.gene92495:CDS |
| AATTCTTTGTTGCAGTTACT+TGG | 0.374830 | 7.3:-77298138 | MS.gene92495:intron |
| ATTTGAAATGATGGTGTTGA+TGG | 0.382144 | 7.3:+77296785 | None:intergenic |
| GCTATGTTTGATCTCTTCCC+TGG | 0.391065 | 7.3:-77296857 | MS.gene92495:CDS |
| TCTAGATTCTCCATATGTTC+CGG | 0.422180 | 7.3:-77295750 | MS.gene92495:intron |
| GTTCCAATTGCAAGGAAGCC+AGG | 0.422492 | 7.3:+77296839 | None:intergenic |
| CCAATGACCAAATCTTTGAA+TGG | 0.422656 | 7.3:+77298075 | None:intergenic |
| TTCCTTGCAATTGGAACACT+TGG | 0.425497 | 7.3:-77296833 | MS.gene92495:CDS |
| CTTTGTTGCAGTTACTTGGC+TGG | 0.428583 | 7.3:-77298134 | MS.gene92495:intron |
| ATGCACAACGTAGCCTTTGT+TGG | 0.437594 | 7.3:+77295633 | None:intergenic |
| TGCACAACGTAGCCTTTGTT+GGG | 0.450415 | 7.3:+77295634 | None:intergenic |
| TGAACTGAGATTTGAAATGA+TGG | 0.462331 | 7.3:+77296776 | None:intergenic |
| CATCTTCTTACAGAGAGCAT+TGG | 0.475849 | 7.3:-77295597 | MS.gene92495:CDS |
| CTGCTTGAAGAATCATAGCT+TGG | 0.479883 | 7.3:+77296647 | None:intergenic |
| ATCCAGAAAGTTCAACAGTT+GGG | 0.483987 | 7.3:-77295717 | MS.gene92495:CDS |
| GTCAGCATAGTAACAATAAG+TGG | 0.484365 | 7.3:-77296566 | MS.gene92495:CDS |
| TACTTCTTCCAGTGCTGACA+TGG | 0.492523 | 7.3:+77296618 | None:intergenic |
| TACTTCTTCCAGTGCTGACA+TGG | 0.496234 | 7.3:+77296594 | None:intergenic |
| AATGCTGTTTGTCCTTTACA+AGG | 0.501835 | 7.3:-77296518 | MS.gene92495:CDS |
| ATTTGATAAGAGAAATGAAA+GGG | 0.502426 | 7.3:-77296351 | MS.gene92495:CDS |
| AGAAGTAGCCATGTCAGCAC+TGG | 0.514813 | 7.3:-77296602 | MS.gene92495:CDS |
| AGTTACTTGGCTGGATGCAT+AGG | 0.536259 | 7.3:-77298125 | MS.gene92495:CDS |
| TTCCAAGTGTTCCAATTGCA+AGG | 0.537713 | 7.3:+77296831 | None:intergenic |
| ATAAGTGGAAAACCAATTGA+AGG | 0.538137 | 7.3:-77296551 | MS.gene92495:CDS |
| ATTCTTGCAATTGTCTATCA+GGG | 0.538206 | 7.3:-77297051 | MS.gene92495:CDS |
| ATGGATTTGATGAAATTGGT+TGG | 0.539687 | 7.3:+77296804 | None:intergenic |
| CCAAACAAATAACCTTGTAA+AGG | 0.544230 | 7.3:+77296506 | None:intergenic |
| CATCCAGAAAGTTCAACAGT+TGG | 0.544754 | 7.3:-77295718 | MS.gene92495:CDS |
| AGAAACAGCCATGTCAGCAC+TGG | 0.552963 | 7.3:-77296626 | MS.gene92495:CDS |
| TTCCAATTGCAAGGAAGCCA+GGG | 0.572756 | 7.3:+77296840 | None:intergenic |
| GAAACAGCAGTTACTAGTGT+TGG | 0.588615 | 7.3:-77296464 | MS.gene92495:CDS |
| AATCTCAGTTCAAACCATAA+CGG | 0.593741 | 7.3:-77296765 | MS.gene92495:CDS |
| TTATTGTTACTATGCTGACA+TGG | 0.607345 | 7.3:+77296570 | None:intergenic |
| AAAGAACATAGGACTTCACT+AGG | 0.622512 | 7.3:-77296437 | MS.gene92495:CDS |
| AATTTGATAAGAGAAATGAA+AGG | 0.630350 | 7.3:-77296352 | MS.gene92495:CDS |
| AATGATGGAGGTCCCAACAA+AGG | 0.636070 | 7.3:-77295646 | MS.gene92495:CDS |
| AGCTGAGACTAAACTCAACA+AGG | 0.662833 | 7.3:-77296213 | MS.gene92495:intron |
| GTGTTGGTAAGAAAGAACAT+AGG | 0.680570 | 7.3:-77296448 | MS.gene92495:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCTTCTTTATAAT+TGG | + | chr7.3:77296393-77296412 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr7.3:77297673-77297692 | None:intergenic | 10.0% |
| !! | AATTAAAGTTATATTGTATT+GGG | + | chr7.3:77297608-77297627 | None:intergenic | 10.0% |
| !! | ACCTAAAAAATTATAATAAA+TGG | + | chr7.3:77296461-77296480 | None:intergenic | 10.0% |
| !! | CCTAAAAAATTATAATAAAT+GGG | + | chr7.3:77296460-77296479 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr7.3:77297674-77297693 | None:intergenic | 10.0% |
| !! | TAATTAAAGTTATATTGTAT+TGG | + | chr7.3:77297609-77297628 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTGAATTAGT+CGG | + | chr7.3:77297124-77297143 | None:intergenic | 10.0% |
| !!! | ATAATTTTTATTGTTGAAAA+AGG | - | chr7.3:77296934-77296953 | MS.gene92495:CDS | 10.0% |
| !!! | TTTTAAACTTAACTTTTTAT+TGG | + | chr7.3:77297444-77297463 | None:intergenic | 10.0% |
| !!! | TTTTTACTATTTTATTTTGA+TGG | + | chr7.3:77294022-77294041 | None:intergenic | 10.0% |
| !! | AAAAAAGTTAATCATATTTG+AGG | + | chr7.3:77294564-77294583 | None:intergenic | 15.0% |
| !! | AAACAGACATATTAAATTTA+AGG | - | chr7.3:77296416-77296435 | MS.gene92495:CDS | 15.0% |
| !! | AAATTATCTTCTAATTAAGT+TGG | - | chr7.3:77293576-77293595 | MS.gene92495:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr7.3:77297672-77297691 | None:intergenic | 15.0% |
| !! | ATAGTTGTATACAAATTAAA+TGG | + | chr7.3:77296907-77296926 | None:intergenic | 15.0% |
| !! | ATTAAACTTAAAAGTTATAG+TGG | + | chr7.3:77294444-77294463 | None:intergenic | 15.0% |
| !! | GAACTTATGAAAAAAATTTA+CGG | + | chr7.3:77293929-77293948 | None:intergenic | 15.0% |
| !! | GTCAATTGTTTATTATAATA+AGG | - | chr7.3:77296808-77296827 | MS.gene92495:CDS | 15.0% |
| !! | TACTCTTATATCATATTATT+AGG | - | chr7.3:77297765-77297784 | MS.gene92495:intron | 15.0% |
| !! | TATACTACAAAATATATATG+AGG | + | chr7.3:77296232-77296251 | None:intergenic | 15.0% |
| !!! | AGAAGATAATTTTATATGAT+TGG | + | chr7.3:77293568-77293587 | None:intergenic | 15.0% |
| !!! | ATGATTATAAATTTTGGATT+TGG | - | chr7.3:77295974-77295993 | MS.gene92495:intron | 15.0% |
| !!! | CCCATTTATTATAATTTTTT+AGG | - | chr7.3:77296457-77296476 | MS.gene92495:CDS | 15.0% |
| !!! | CTTTTCAAATGTAAATATAT+AGG | - | chr7.3:77296859-77296878 | MS.gene92495:CDS | 15.0% |
| !!! | GGACATTTTTTTTAAAAAAT+GGG | + | chr7.3:77297541-77297560 | None:intergenic | 15.0% |
| !!! | TAATAAACAATTGACTTTTT+TGG | + | chr7.3:77296803-77296822 | None:intergenic | 15.0% |
| !!! | TAATTTTTGTTGTTTAGATA+GGG | - | chr7.3:77295869-77295888 | MS.gene92495:intron | 15.0% |
| !!! | TGGACATTTTTTTTAAAAAA+TGG | + | chr7.3:77297542-77297561 | None:intergenic | 15.0% |
| !!! | TGTACATTATAATTATTTTC+AGG | + | chr7.3:77296264-77296283 | None:intergenic | 15.0% |
| !!! | TTAACATTTTCTTTTCAATA+TGG | - | chr7.3:77297349-77297368 | MS.gene92495:intron | 15.0% |
| !! | AAAAATTCTTCATCTACAAA+TGG | - | chr7.3:77295492-77295511 | MS.gene92495:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr7.3:77297649-77297668 | None:intergenic | 20.0% |
| !! | AAGAAGAAAAATATGAATGA+TGG | - | chr7.3:77296088-77296107 | MS.gene92495:intron | 20.0% |
| !! | AATAATGAATTTACCAATCA+TGG | - | chr7.3:77294058-77294077 | MS.gene92495:intron | 20.0% |
| !! | AATTTGATAAGAGAAATGAA+AGG | - | chr7.3:77295397-77295416 | MS.gene92495:intron | 20.0% |
| !! | AATTTGTATCACAATATGTT+CGG | - | chr7.3:77295763-77295782 | MS.gene92495:intron | 20.0% |
| !! | ATCAGTTGTTAATTATCAAT+TGG | + | chr7.3:77298096-77298115 | None:intergenic | 20.0% |
| !! | ATTTGATAAGAGAAATGAAA+GGG | - | chr7.3:77295398-77295417 | MS.gene92495:intron | 20.0% |
| !! | GAACAAACAAATACATATAT+AGG | + | chr7.3:77298189-77298208 | None:intergenic | 20.0% |
| !! | TTAAAATTTGCCATGTTTAA+AGG | - | chr7.3:77294537-77294556 | MS.gene92495:intron | 20.0% |
| !! | TTGTTTATTATAATAAGGAC+CGG | - | chr7.3:77296813-77296832 | MS.gene92495:CDS | 20.0% |
| !!! | AGAAAATGAGCAATTTTAAA+AGG | + | chr7.3:77297806-77297825 | None:intergenic | 20.0% |
| !!! | ATTAAATCACTTTTTAAGTC+GGG | + | chr7.3:77297911-77297930 | None:intergenic | 20.0% |
| !!! | CTGTTCATGATTATAAATTT+TGG | - | chr7.3:77295968-77295987 | MS.gene92495:intron | 20.0% |
| !!! | GATTAAATCACTTTTTAAGT+CGG | + | chr7.3:77297912-77297931 | None:intergenic | 20.0% |
| !!! | GTAATTTTTGTTGTTTAGAT+AGG | - | chr7.3:77295868-77295887 | MS.gene92495:intron | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | + | chr7.3:77296709-77296728 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | - | chr7.3:77296714-77296733 | MS.gene92495:CDS | 20.0% |
| !!! | TATTTATTATTTAGAGTAGC+CGG | - | chr7.3:77297085-77297104 | MS.gene92495:intron | 20.0% |
| !!! | TTGTATTGATTTGATACTTT+CGG | + | chr7.3:77296982-77297001 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTCGTAAGTTATT+TGG | - | chr7.3:77293863-77293882 | MS.gene92495:intron | 20.0% |
| ! | AAGAAAAATATGAATGATGG+AGG | - | chr7.3:77296091-77296110 | MS.gene92495:intron | 25.0% |
| ! | ATTACTCTTGTCTAATTAAG+AGG | - | chr7.3:77294331-77294350 | MS.gene92495:intron | 25.0% |
| ! | ATTTGTATCACAATATGTTC+GGG | - | chr7.3:77295764-77295783 | MS.gene92495:intron | 25.0% |
| ! | CTTATAGTCAAGATATGAAT+AGG | + | chr7.3:77294482-77294501 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr7.3:77297650-77297669 | None:intergenic | 25.0% |
| ! | TAGCACATAACTTTATTCAA+TGG | + | chr7.3:77294193-77294212 | None:intergenic | 25.0% |
| ! | TATCATCAAAAACCAAATCT+TGG | - | chr7.3:77294748-77294767 | MS.gene92495:intron | 25.0% |
| ! | TTAAATAGTCAATGCATGTT+AGG | + | chr7.3:77293749-77293768 | None:intergenic | 25.0% |
| ! | TTATCTACCAAGACAAAAAT+AGG | + | chr7.3:77295937-77295956 | None:intergenic | 25.0% |
| !! | AATCTTTTGTACCAATCAAT+AGG | - | chr7.3:77294266-77294285 | MS.gene92495:intron | 25.0% |
| !! | AGGGAATGATCAATTTTAAA+AGG | - | chr7.3:77298004-77298023 | MS.gene92495:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | + | chr7.3:77296704-77296723 | None:intergenic | 25.0% |
| !! | TTCTTTTTGTGATATAGTCA+CGG | + | chr7.3:77297187-77297206 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr7.3:77297562-77297581 | None:intergenic | 25.0% |
| !! | TTTATTCAATGGTTGTTGTT+AGG | + | chr7.3:77294182-77294201 | None:intergenic | 25.0% |
| !! | TTTTTGTCTTGGTAGATAAA+TGG | - | chr7.3:77295938-77295957 | MS.gene92495:intron | 25.0% |
| !!! | AAATCGCTATTTTAAAACGT+TGG | - | chr7.3:77296622-77296641 | MS.gene92495:CDS | 25.0% |
| !!! | AATCGCTATTTTAAAACGTT+GGG | - | chr7.3:77296623-77296642 | MS.gene92495:CDS | 25.0% |
| !!! | ACTTTTTCAGAGAAGTAAAT+TGG | - | chr7.3:77295338-77295357 | MS.gene92495:intron | 25.0% |
| !!! | AGTTTGTTACTCATTAGTTA+AGG | - | chr7.3:77295738-77295757 | MS.gene92495:CDS | 25.0% |
| !!! | ATAAAAGCCTATTTTTGTCT+TGG | - | chr7.3:77295927-77295946 | MS.gene92495:intron | 25.0% |
| !!! | ATGTTTAGACTCACTTTTAA+GGG | - | chr7.3:77294505-77294524 | MS.gene92495:intron | 25.0% |
| !!! | GGGAATGATCAATTTTAAAA+GGG | - | chr7.3:77298005-77298024 | MS.gene92495:intron | 25.0% |
| !!! | TATTATAGTTTAGTTCTCCT+TGG | + | chr7.3:77294111-77294130 | None:intergenic | 25.0% |
| !!! | TCGTTGTTTAAAGCAATTTT+TGG | - | chr7.3:77294583-77294602 | MS.gene92495:intron | 25.0% |
| !!! | TTTTGCAACTAAACTTGTTT+GGG | - | chr7.3:77297053-77297072 | MS.gene92495:CDS | 25.0% |
| !!! | TTTTTGCAACTAAACTTGTT+TGG | - | chr7.3:77297052-77297071 | MS.gene92495:CDS | 25.0% |
| AAAAAATGGGTCAGATATTC+CGG | + | chr7.3:77297528-77297547 | None:intergenic | 30.0% | |
| AACTTCAGAAAATCATTTGC+TGG | - | chr7.3:77294808-77294827 | MS.gene92495:intron | 30.0% | |
| AATCTCAGTTCAAACCATAA+CGG | - | chr7.3:77294984-77295003 | MS.gene92495:intron | 30.0% | |
| AATTCTTGCAATTGTCTATC+AGG | - | chr7.3:77294697-77294716 | MS.gene92495:intron | 30.0% | |
| AATTCTTTGTTGCAGTTACT+TGG | - | chr7.3:77293611-77293630 | MS.gene92495:intron | 30.0% | |
| AGAAACTTTGATGAACTAGA+AGG | + | chr7.3:77295688-77295707 | None:intergenic | 30.0% | |
| AGAAGGGATATACTTATCAA+TGG | + | chr7.3:77298059-77298078 | None:intergenic | 30.0% | |
| AGTCGGTATGTATTTATATC+CGG | + | chr7.3:77297107-77297126 | None:intergenic | 30.0% | |
| ATAAGTGGAAAACCAATTGA+AGG | - | chr7.3:77295198-77295217 | MS.gene92495:intron | 30.0% | |
| ATCAGTGTGAAAAATCAAAC+TGG | - | chr7.3:77297694-77297713 | MS.gene92495:intron | 30.0% | |
| ATGGATTTGATGAAATTGGT+TGG | + | chr7.3:77294948-77294967 | None:intergenic | 30.0% | |
| ATTCTTGCAATTGTCTATCA+GGG | - | chr7.3:77294698-77294717 | MS.gene92495:intron | 30.0% | |
| CAATATGTTCGGGAAATATT+TGG | - | chr7.3:77295774-77295793 | MS.gene92495:intron | 30.0% | |
| CCAAACAAATAACCTTGTAA+AGG | + | chr7.3:77295246-77295265 | None:intergenic | 30.0% | |
| CCTTTACAAGGTTATTTGTT+TGG | - | chr7.3:77295243-77295262 | MS.gene92495:intron | 30.0% | |
| GAAGAACATGAAGAAGAATA+TGG | - | chr7.3:77294847-77294866 | MS.gene92495:intron | 30.0% | |
| GTTAGGTAAATTGTCTTCTT+GGG | + | chr7.3:77294165-77294184 | None:intergenic | 30.0% | |
| TAAGAAGATGAATCTTCTTC+TGG | + | chr7.3:77296142-77296161 | None:intergenic | 30.0% | |
| TACAGAACCATTCAAAGATT+TGG | - | chr7.3:77293667-77293686 | MS.gene92495:intron | 30.0% | |
| TAGAAGAAAAGAATCACTAG+TGG | - | chr7.3:77297236-77297255 | MS.gene92495:intron | 30.0% | |
| TATCAAACATGCATTTGTTC+TGG | + | chr7.3:77295602-77295621 | None:intergenic | 30.0% | |
| TATTAATCTATTACTCCCTC+CGG | + | chr7.3:77296835-77296854 | None:intergenic | 30.0% | |
| TATTTGAGGACCTTTAAACA+TGG | + | chr7.3:77294550-77294569 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr7.3:77297665-77297684 | None:intergenic | 30.0% | |
| TGTTAGGTAAATTGTCTTCT+TGG | + | chr7.3:77294166-77294185 | None:intergenic | 30.0% | |
| TTATTATAATAAGGACCGGA+GGG | - | chr7.3:77296817-77296836 | MS.gene92495:CDS | 30.0% | |
| TTATTGTTACTATGCTGACA+TGG | + | chr7.3:77295182-77295201 | None:intergenic | 30.0% | |
| TTGAATCTGATTCCAAGATT+TGG | + | chr7.3:77294763-77294782 | None:intergenic | 30.0% | |
| TTTATTATAATAAGGACCGG+AGG | - | chr7.3:77296816-77296835 | MS.gene92495:CDS | 30.0% | |
| TTTCGTTAAAAGCGAGTTTA+AGG | + | chr7.3:77294654-77294673 | None:intergenic | 30.0% | |
| ! | AAGTATATCCCTTCTTTTGT+GGG | - | chr7.3:77298064-77298083 | MS.gene92495:intron | 30.0% |
| ! | AATCAATTTTTCTATGTCGC+AGG | - | chr7.3:77294673-77294692 | MS.gene92495:intron | 30.0% |
| ! | ATTTGAAATGATGGTGTTGA+TGG | + | chr7.3:77294967-77294986 | None:intergenic | 30.0% |
| ! | ATTTTTCATCTCATTGAGAC+AGG | + | chr7.3:77297493-77297512 | None:intergenic | 30.0% |
| ! | CTTTGTTTGAATTGCGTTAT+TGG | + | chr7.3:77293990-77294009 | None:intergenic | 30.0% |
| ! | CTTTTCAACATGGTTTCAAA+CGG | - | chr7.3:77294418-77294437 | MS.gene92495:intron | 30.0% |
| ! | GAAGTATTCTGCTTTGAATA+TGG | - | chr7.3:77295428-77295447 | MS.gene92495:intron | 30.0% |
| ! | TAAGTATATCCCTTCTTTTG+TGG | - | chr7.3:77298063-77298082 | MS.gene92495:intron | 30.0% |
| ! | TCAAACTGGCTCAAATAAAA+CGG | - | chr7.3:77297708-77297727 | MS.gene92495:intron | 30.0% |
| ! | TCTTTTTGTGATATAGTCAC+GGG | + | chr7.3:77297186-77297205 | None:intergenic | 30.0% |
| ! | TGAACTGAGATTTGAAATGA+TGG | + | chr7.3:77294976-77294995 | None:intergenic | 30.0% |
| ! | TTCGTTTTCATTTTCCGTTA+TGG | + | chr7.3:77295001-77295020 | None:intergenic | 30.0% |
| ! | TTTGCAACTAAACTTGTTTG+GGG | - | chr7.3:77297054-77297073 | MS.gene92495:CDS | 30.0% |
| ! | TTTTGTTCTTCATCAAGTGA+TGG | + | chr7.3:77294727-77294746 | None:intergenic | 30.0% |
| !! | CATGTTTAGACTCACTTTTA+AGG | - | chr7.3:77294504-77294523 | MS.gene92495:intron | 30.0% |
| !! | GATCAATTTTAAAAGGGAGA+AGG | - | chr7.3:77298011-77298030 | MS.gene92495:intron | 30.0% |
| !! | GTTGATGGATTTGATGAAAT+TGG | + | chr7.3:77294952-77294971 | None:intergenic | 30.0% |
| !!! | GATTGGTTTTGATTCTGAAA+AGG | + | chr7.3:77293551-77293570 | None:intergenic | 30.0% |
| !!! | GATTTTCTGAAGTTGTTTTG+AGG | + | chr7.3:77294802-77294821 | None:intergenic | 30.0% |
| !!! | TTTCTGGATGAACTTTTTTC+CGG | + | chr7.3:77296021-77296040 | None:intergenic | 30.0% |
| !!! | TTTTATTTTGATGGCCATCA+AGG | + | chr7.3:77294013-77294032 | None:intergenic | 30.0% |
| AAAAATGGGTCAGATATTCC+GGG | + | chr7.3:77297527-77297546 | None:intergenic | 35.0% | |
| AAAGAACATAGGACTTCACT+AGG | - | chr7.3:77295312-77295331 | MS.gene92495:intron | 35.0% | |
| ACCAATCATGGATGAGTAAT+TGG | - | chr7.3:77294070-77294089 | MS.gene92495:intron | 35.0% | |
| AGCTCGCAAAAAATTTATGC+AGG | - | chr7.3:77296365-77296384 | MS.gene92495:CDS | 35.0% | |
| ATCCAGAAAGTTCAACAGTT+GGG | - | chr7.3:77296032-77296051 | MS.gene92495:intron | 35.0% | |
| CAATTCAAACAAAGCCTTGA+TGG | - | chr7.3:77293996-77294015 | MS.gene92495:intron | 35.0% | |
| CCAATGACCAAATCTTTGAA+TGG | + | chr7.3:77293677-77293696 | None:intergenic | 35.0% | |
| CTCGCAAAAAATTTATGCAG+GGG | - | chr7.3:77296367-77296386 | MS.gene92495:CDS | 35.0% | |
| GATGAGTTAGAGAAAGTTCT+TGG | - | chr7.3:77295057-77295076 | MS.gene92495:intron | 35.0% | |
| GCTCGCAAAAAATTTATGCA+GGG | - | chr7.3:77296366-77296385 | MS.gene92495:CDS | 35.0% | |
| GGCTTTCTCATTATTGTTGT+AGG | + | chr7.3:77296306-77296325 | None:intergenic | 35.0% | |
| GTCAGCATAGTAACAATAAG+TGG | - | chr7.3:77295183-77295202 | MS.gene92495:intron | 35.0% | |
| TATGAGCTCGTCAATTTATG+TGG | + | chr7.3:77297411-77297430 | None:intergenic | 35.0% | |
| TATGAGGTAGACATAGCATA+TGG | + | chr7.3:77296216-77296235 | None:intergenic | 35.0% | |
| TCCAATTACTCATCCATGAT+TGG | + | chr7.3:77294074-77294093 | None:intergenic | 35.0% | |
| TCTAGATTCTCCATATGTTC+CGG | - | chr7.3:77295999-77296018 | MS.gene92495:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr7.3:77296700-77296719 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr7.3:77296701-77296720 | None:intergenic | 35.0% | |
| TTTGTGTCTGTTCCTTCAAT+TGG | + | chr7.3:77295213-77295232 | None:intergenic | 35.0% | |
| ! | AATGCTGTTTGTCCTTTACA+AGG | - | chr7.3:77295231-77295250 | MS.gene92495:intron | 35.0% |
| ! | CCATTCAAAGATTTGGTCAT+TGG | - | chr7.3:77293674-77293693 | MS.gene92495:intron | 35.0% |
| ! | CGTTTGAAACCATGTTGAAA+AGG | + | chr7.3:77294420-77294439 | None:intergenic | 35.0% |
| ! | GTGTTGGTAAGAAAGAACAT+AGG | - | chr7.3:77295301-77295320 | MS.gene92495:intron | 35.0% |
| ! | TCCAAAGCAACAATTTTGAG+CGG | - | chr7.3:77294372-77294391 | MS.gene92495:intron | 35.0% |
| ! | TTGGCTGATGAGATTTCTTT+TGG | - | chr7.3:77295357-77295376 | MS.gene92495:intron | 35.0% |
| !! | TAGACTCACTTTTAAGGGAA+CGG | - | chr7.3:77294510-77294529 | MS.gene92495:intron | 35.0% |
| !! | TTCTTGTATATGCCACTTTG+AGG | - | chr7.3:77298118-77298137 | MS.gene92495:CDS | 35.0% |
| !! | TTGACGAAAGTATTGTGACA+AGG | - | chr7.3:77295633-77295652 | MS.gene92495:CDS | 35.0% |
| !!! | GAACTTTTTTCCGGAACATA+TGG | + | chr7.3:77296012-77296031 | None:intergenic | 35.0% |
| AAAGAATCACTAGTGGTGTG+TGG | - | chr7.3:77297243-77297262 | MS.gene92495:intron | 40.0% | |
| AAAGGAGGAGGATACAAGTA+GGG | + | chr7.3:77296327-77296346 | None:intergenic | 40.0% | |
| AGCTGAGACTAAACTCAACA+AGG | - | chr7.3:77295536-77295555 | MS.gene92495:intron | 40.0% | |
| AGGCAAGGTGTAACAGAATA+TGG | + | chr7.3:77298151-77298170 | None:intergenic | 40.0% | |
| ATAGGCGTGCTAAAAGTAGT+AGG | + | chr7.3:77298171-77298190 | None:intergenic | 40.0% | |
| ATGTTGCGTCTCCTATTGAT+TGG | + | chr7.3:77294280-77294299 | None:intergenic | 40.0% | |
| CATCCAGAAAGTTCAACAGT+TGG | - | chr7.3:77296031-77296050 | MS.gene92495:intron | 40.0% | |
| CTGCTTGAAGAATCATAGCT+TGG | + | chr7.3:77295105-77295124 | None:intergenic | 40.0% | |
| GAAACAGCAGTTACTAGTGT+TGG | - | chr7.3:77295285-77295304 | MS.gene92495:intron | 40.0% | |
| GAATATGAGCTAAGTTCTGC+TGG | - | chr7.3:77297977-77297996 | MS.gene92495:intron | 40.0% | |
| GGCAAGGTGTAACAGAATAT+GGG | + | chr7.3:77298150-77298169 | None:intergenic | 40.0% | |
| GGCTATATCCCACAAAAGAA+GGG | + | chr7.3:77298075-77298094 | None:intergenic | 40.0% | |
| GGGACGATAATCATTCTTAG+CGG | - | chr7.3:77294393-77294412 | MS.gene92495:intron | 40.0% | |
| GTAGCTTGAAAACAGCATGT+TGG | + | chr7.3:77293704-77293723 | None:intergenic | 40.0% | |
| TGCATGTTTAATACTCCCTC+CGG | - | chr7.3:77296682-77296701 | MS.gene92495:CDS | 40.0% | |
| TGGCTATATCCCACAAAAGA+AGG | + | chr7.3:77298076-77298095 | None:intergenic | 40.0% | |
| TTCCAAGTGTTCCAATTGCA+AGG | + | chr7.3:77294921-77294940 | None:intergenic | 40.0% | |
| TTCCTTGCAATTGGAACACT+TGG | - | chr7.3:77294916-77294935 | MS.gene92495:intron | 40.0% | |
| ! | ACTGGCTCAAATAAAACGGA+CGG | - | chr7.3:77297712-77297731 | MS.gene92495:intron | 40.0% |
| ! | CATCTTCTTACAGAGAGCAT+TGG | - | chr7.3:77296152-77296171 | MS.gene92495:intron | 40.0% |
| ! | CCAAAGCAACAATTTTGAGC+GGG | - | chr7.3:77294373-77294392 | MS.gene92495:intron | 40.0% |
| ! | GCTCATTTTCTTGATCCAAC+AGG | - | chr7.3:77297815-77297834 | MS.gene92495:intron | 40.0% |
| ! | GCTTTGGACAACATTTGAAG+AGG | + | chr7.3:77294360-77294379 | None:intergenic | 40.0% |
| !! | TGTATATGCCACTTTGAGGA+TGG | - | chr7.3:77298122-77298141 | MS.gene92495:CDS | 40.0% |
| !!! | CACGCAGAAACTTTTGAGAT+CGG | - | chr7.3:77297881-77297900 | MS.gene92495:intron | 40.0% |
| AGCTAAGTTCTGCTGGATCA+AGG | - | chr7.3:77297984-77298003 | MS.gene92495:intron | 45.0% | |
| AGTTACTTGGCTGGATGCAT+AGG | - | chr7.3:77293624-77293643 | MS.gene92495:intron | 45.0% | |
| ATGCACAACGTAGCCTTTGT+TGG | + | chr7.3:77296119-77296138 | None:intergenic | 45.0% | |
| CCTCCTTTCACTATATCCAG+CGG | - | chr7.3:77296339-77296358 | MS.gene92495:CDS | 45.0% | |
| CGTGCTAAAAGTAGTAGGCA+AGG | + | chr7.3:77298166-77298185 | None:intergenic | 45.0% | |
| CTGGATATAGTGAAAGGAGG+AGG | + | chr7.3:77296339-77296358 | None:intergenic | 45.0% | |
| CTTTGTTGCAGTTACTTGGC+TGG | - | chr7.3:77293615-77293634 | MS.gene92495:intron | 45.0% | |
| GAAAGGAGGAGGATACAAGT+AGG | + | chr7.3:77296328-77296347 | None:intergenic | 45.0% | |
| GCTAAGTTCTGCTGGATCAA+GGG | - | chr7.3:77297985-77298004 | MS.gene92495:intron | 45.0% | |
| GCTATGTTTGATCTCTTCCC+TGG | - | chr7.3:77294892-77294911 | MS.gene92495:intron | 45.0% | |
| GCTCAAATAAAACGGACGGA+AGG | - | chr7.3:77297716-77297735 | MS.gene92495:intron | 45.0% | |
| GTTCGGGAAATATTTGGACG+AGG | - | chr7.3:77295780-77295799 | MS.gene92495:intron | 45.0% | |
| TCAACAGTTGGGCACAAATC+TGG | - | chr7.3:77296043-77296062 | MS.gene92495:intron | 45.0% | |
| TGCACAACGTAGCCTTTGTT+GGG | + | chr7.3:77296118-77296137 | None:intergenic | 45.0% | |
| TGCCCAACTGTTGAACTTTC+TGG | + | chr7.3:77296037-77296056 | None:intergenic | 45.0% | |
| TTCCAATTGCAAGGAAGCCA+GGG | + | chr7.3:77294912-77294931 | None:intergenic | 45.0% | |
| ! | AATGATGGAGGTCCCAACAA+AGG | - | chr7.3:77296103-77296122 | MS.gene92495:intron | 45.0% |
| ! | CCCGCTCAAAATTGTTGCTT+TGG | + | chr7.3:77294376-77294395 | None:intergenic | 45.0% |
| ! | GGAACAAAAGTATGCAGCCA+AGG | - | chr7.3:77294091-77294110 | MS.gene92495:intron | 45.0% |
| !! | CTTAGCGGACCTTTTCAACA+TGG | - | chr7.3:77294408-77294427 | MS.gene92495:intron | 45.0% |
| !! | TACTTCTTCCAGTGCTGACA+TGG | + | chr7.3:77295134-77295153 | None:intergenic | 45.0% |
| !!! | AAAATTGAATAATTTTTTTA+TGG | + | chr7.3:77296489-77296508 | None:intergenic | 5.0% |
| !!! | ATTCAAAAATAATATTTTTT+TGG | - | chr7.3:77297128-77297147 | MS.gene92495:intron | 5.0% |
| !!! | TTCAAAAATAATATTTTTTT+GGG | - | chr7.3:77297129-77297148 | MS.gene92495:intron | 5.0% |
| ACGGGCGTAGCCCTTTATAT+GGG | + | chr7.3:77297168-77297187 | None:intergenic | 50.0% | |
| AGAAACAGCCATGTCAGCAC+TGG | - | chr7.3:77295123-77295142 | MS.gene92495:intron | 50.0% | |
| AGAAGTAGCCATGTCAGCAC+TGG | - | chr7.3:77295147-77295166 | MS.gene92495:intron | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr7.3:77297523-77297542 | None:intergenic | 50.0% | |
| CCCTACCCCTCCCATATAAA+GGG | - | chr7.3:77297155-77297174 | MS.gene92495:intron | 50.0% | |
| CCCTTTATATGGGAGGGGTA+GGG | + | chr7.3:77297158-77297177 | None:intergenic | 50.0% | |
| CCGCTGGATATAGTGAAAGG+AGG | + | chr7.3:77296342-77296361 | None:intergenic | 50.0% | |
| CGTAGCCCTTTATATGGGAG+GGG | + | chr7.3:77297163-77297182 | None:intergenic | 50.0% | |
| GAGCGTGAGTTAACTCCTGT+TGG | + | chr7.3:77297833-77297852 | None:intergenic | 50.0% | |
| GCGTAGCCCTTTATATGGGA+GGG | + | chr7.3:77297164-77297183 | None:intergenic | 50.0% | |
| GTTCCAATTGCAAGGAAGCC+AGG | + | chr7.3:77294913-77294932 | None:intergenic | 50.0% | |
| TATGGGCTCCATCCTCAAAG+TGG | + | chr7.3:77298133-77298152 | None:intergenic | 50.0% | |
| TCGCCGCTGGATATAGTGAA+AGG | + | chr7.3:77296345-77296364 | None:intergenic | 50.0% | |
| TTCCCTGGCTTCCTTGCAAT+TGG | - | chr7.3:77294907-77294926 | MS.gene92495:intron | 50.0% | |
| CACGGGCGTAGCCCTTTATA+TGG | + | chr7.3:77297169-77297188 | None:intergenic | 55.0% | |
| GCCCTACCCCTCCCATATAA+AGG | - | chr7.3:77297154-77297173 | MS.gene92495:intron | 55.0% | |
| GCCCTTTATATGGGAGGGGT+AGG | + | chr7.3:77297159-77297178 | None:intergenic | 55.0% | |
| GGCGTAGCCCTTTATATGGG+AGG | + | chr7.3:77297165-77297184 | None:intergenic | 55.0% | |
| !!! | TTTTTTGCGAGCTTCGCCGC+TGG | + | chr7.3:77296358-77296377 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77293515 | 77298256 | 77293515 | ID=MS.gene92495 |
| chr7.3 | mRNA | 77293515 | 77298256 | 77293515 | ID=MS.gene92495.t1;Parent=MS.gene92495 |
| chr7.3 | exon | 77298251 | 77298256 | 77298251 | ID=MS.gene92495.t1.exon1;Parent=MS.gene92495.t1 |
| chr7.3 | CDS | 77298251 | 77298256 | 77298251 | ID=cds.MS.gene92495.t1;Parent=MS.gene92495.t1 |
| chr7.3 | exon | 77298076 | 77298145 | 77298076 | ID=MS.gene92495.t1.exon2;Parent=MS.gene92495.t1 |
| chr7.3 | CDS | 77298076 | 77298145 | 77298076 | ID=cds.MS.gene92495.t1;Parent=MS.gene92495.t1 |
| chr7.3 | exon | 77296214 | 77297076 | 77296214 | ID=MS.gene92495.t1.exon3;Parent=MS.gene92495.t1 |
| chr7.3 | CDS | 77296214 | 77297076 | 77296214 | ID=cds.MS.gene92495.t1;Parent=MS.gene92495.t1 |
| chr7.3 | exon | 77295578 | 77295767 | 77295578 | ID=MS.gene92495.t1.exon4;Parent=MS.gene92495.t1 |
| chr7.3 | CDS | 77295578 | 77295767 | 77295578 | ID=cds.MS.gene92495.t1;Parent=MS.gene92495.t1 |
| chr7.3 | exon | 77293515 | 77293534 | 77293515 | ID=MS.gene92495.t1.exon5;Parent=MS.gene92495.t1 |
| chr7.3 | CDS | 77293515 | 77293534 | 77293515 | ID=cds.MS.gene92495.t1;Parent=MS.gene92495.t1 |
| Gene Sequence |
| Protein sequence |
