Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92747.t1 | XP_003604078.1 | 97.9 | 340 | 7 | 0 | 1 | 340 | 9 | 348 | 3.50E-195 | 690.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92747.t1 | O64862 | 85.7 | 343 | 46 | 2 | 1 | 340 | 13 | 355 | 4.3e-173 | 608.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92747.t1 | G7J985 | 97.9 | 340 | 7 | 0 | 1 | 340 | 9 | 348 | 2.5e-195 | 690.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene92747 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene92747 | 0.83637 | 9.74E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene92747 | 0.803971 | 2.70E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene92747 | 0.807359 | 5.25E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene92747 | -0.80118 | 1.02E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene92747 | 0.835481 | 1.64E-56 | -1.69E-46 |
| MS.gene056097 | MS.gene92747 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene92747 | 0.811007 | 8.68E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene92747 | 0.806282 | 8.87E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene92747 | 0.814809 | 1.27E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene92747 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene92747 | 0.80754 | 4.81E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene92747 | 0.803993 | 2.67E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene92747 | 0.816069 | 6.69E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92747.t1 | MTR_3g118250 | 97.941 | 340 | 7 | 0 | 1 | 340 | 9 | 348 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92747.t1 | AT2G44270 | 85.714 | 343 | 46 | 2 | 1 | 340 | 13 | 355 | 0.0 | 607 |
| MS.gene92747.t1 | AT1G76170 | 83.699 | 319 | 50 | 1 | 24 | 340 | 14 | 332 | 0.0 | 554 |
| MS.gene92747.t1 | AT1G76170 | 75.852 | 352 | 50 | 2 | 24 | 340 | 14 | 365 | 0.0 | 537 |
| MS.gene92747.t1 | AT1G76170 | 85.232 | 237 | 33 | 1 | 106 | 340 | 9 | 245 | 1.41e-149 | 421 |
| MS.gene92747.t1 | AT1G76170 | 85.232 | 237 | 33 | 1 | 106 | 340 | 9 | 245 | 1.41e-149 | 421 |
| MS.gene92747.t1 | AT1G76170 | 85.232 | 237 | 33 | 1 | 106 | 340 | 9 | 245 | 1.41e-149 | 421 |
| MS.gene92747.t1 | AT1G76170 | 74.815 | 270 | 33 | 2 | 106 | 340 | 9 | 278 | 1.19e-142 | 405 |
| MS.gene92747.t1 | AT1G76170 | 81.863 | 204 | 35 | 1 | 139 | 340 | 3 | 206 | 5.04e-118 | 339 |
Find 90 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCGAGGTTTGCCTAAAT+TGG | 0.168714 | 3.1:+92945315 | MS.gene92747:CDS |
| TCACCACTTTATCTGCTTTC+AGG | 0.179782 | 3.1:-92944450 | None:intergenic |
| CATTCCCTGTTCAGGCATTT+TGG | 0.211621 | 3.1:-92944886 | None:intergenic |
| AAAGCTTGTGTTCTGCTTGA+TGG | 0.278301 | 3.1:+92945289 | MS.gene92747:CDS |
| ATCGTGAACGCGGTTGAGTT+TGG | 0.296360 | 3.1:-92944191 | None:intergenic |
| CATAGAAATCAGATTGAGTA+TGG | 0.304991 | 3.1:+92944289 | MS.gene92747:CDS |
| TCAAGGATTTGGAGAGAATC+AGG | 0.330630 | 3.1:+92944719 | MS.gene92747:CDS |
| CTCCGTCCAATTCCCAATTT+AGG | 0.357743 | 3.1:-92945328 | None:intergenic |
| CACTACCAAAATGCCTGAAC+AGG | 0.365011 | 3.1:+92944881 | MS.gene92747:CDS |
| TCGTGAGTTCATCAAGGATT+TGG | 0.380248 | 3.1:+92944708 | MS.gene92747:CDS |
| CGAGTCGCCATCGGAGCTTC+CGG | 0.383557 | 3.1:+92944133 | MS.gene92747:CDS |
| ATTCTCGACATCATCAAATC+AGG | 0.388920 | 3.1:+92944837 | MS.gene92747:CDS |
| GGTTTGCCTAAATTGGGAAT+TGG | 0.398830 | 3.1:+92945322 | MS.gene92747:CDS |
| CTCAACCGCGTTCACGATTA+CGG | 0.403364 | 3.1:+92944196 | MS.gene92747:CDS |
| TACTTGAAAGGTTTGCATCT+AGG | 0.405107 | 3.1:-92944586 | None:intergenic |
| TCTCAATGCTCTTTGTTCCA+TGG | 0.409913 | 3.1:-92945387 | None:intergenic |
| AATCGAGGTTTGCCTAAATT+GGG | 0.412591 | 3.1:+92945316 | MS.gene92747:CDS |
| AGATGCAGTTCAATCATAAC+AGG | 0.415710 | 3.1:+92944547 | MS.gene92747:CDS |
| CGTTCACACATTCCCTGTTC+AGG | 0.416347 | 3.1:-92944894 | None:intergenic |
| CTGTGGAGTGTTCCGTCGGC+AGG | 0.418122 | 3.1:+92944405 | MS.gene92747:CDS |
| ATTCTCTGCAAATCTGTTGA+AGG | 0.418305 | 3.1:-92944039 | None:intergenic |
| CTGTGGTTATATTTCTAGTC+AGG | 0.427289 | 3.1:+92944917 | MS.gene92747:CDS |
| AGTGTTCCGTCGGCAGGCAC+TGG | 0.429489 | 3.1:+92944411 | MS.gene92747:CDS |
| ATTGGGAATTGGACGGAGTC+GGG | 0.434977 | 3.1:+92945333 | MS.gene92747:CDS |
| ACTTGAAAGGTTTGCATCTA+GGG | 0.444185 | 3.1:-92944585 | None:intergenic |
| CCAACCGTACAAATCCTTGT+AGG | 0.458072 | 3.1:-92944332 | None:intergenic |
| GCAAAACCACGATAAGCATT+TGG | 0.460833 | 3.1:-92944685 | None:intergenic |
| CTCGGTCGCCGCGGTTGAAG+AGG | 0.461559 | 3.1:-92944114 | None:intergenic |
| TTTCAAGTACACTTATGAAA+AGG | 0.467314 | 3.1:+92944600 | MS.gene92747:CDS |
| TTCTCTGCAAATCTGTTGAA+GGG | 0.489182 | 3.1:-92944038 | None:intergenic |
| GGACGGAGTCGGGTTGCCAT+TGG | 0.493561 | 3.1:+92945343 | MS.gene92747:CDS |
| GATGATGTCGAGAATTGCCC+TGG | 0.494801 | 3.1:-92944829 | None:intergenic |
| AAAGCAGATAAAGTGGTGAC+TGG | 0.502432 | 3.1:+92944454 | MS.gene92747:CDS |
| TCAATCATAACAGGTGAAGA+TGG | 0.503044 | 3.1:+92944556 | MS.gene92747:CDS |
| AAGAGAATCGTCGCGGTAGC+CGG | 0.507747 | 3.1:-92944257 | None:intergenic |
| CGACGGAGAGGAGGAAGAGA+TGG | 0.508983 | 3.1:-92944222 | None:intergenic |
| GAAAGGTTTGCATCTAGGGA+TGG | 0.511544 | 3.1:-92944581 | None:intergenic |
| TCGGGTTGCCATTGGTTGCA+AGG | 0.511777 | 3.1:+92945351 | MS.gene92747:CDS |
| AATTGGGAATTGGACGGAGT+CGG | 0.513581 | 3.1:+92945332 | MS.gene92747:CDS |
| GTGCTGTTAAACATATTAAG+AGG | 0.514072 | 3.1:+92944505 | MS.gene92747:CDS |
| GCCGGTGATGCCCTCGTCGA+CGG | 0.523389 | 3.1:-92944239 | None:intergenic |
| CGGAAGCTCCGATGGCGACT+CGG | 0.524339 | 3.1:-92944132 | None:intergenic |
| CGCGGCGACCGAGTCGCCAT+CGG | 0.524812 | 3.1:+92944124 | MS.gene92747:CDS |
| CTCAATCTGATTTCTATGAA+CGG | 0.526078 | 3.1:-92944284 | None:intergenic |
| GACGGTTGAGTCTTTGCCGC+CGG | 0.528852 | 3.1:-92944152 | None:intergenic |
| CCTTCTGTGGAGTGTTCCGT+CGG | 0.530725 | 3.1:+92944401 | MS.gene92747:CDS |
| TTCTCGACATCATCAAATCA+GGG | 0.532862 | 3.1:+92944838 | MS.gene92747:CDS |
| CTCGATCCAGTGCCTGCCGA+CGG | 0.535112 | 3.1:-92944417 | None:intergenic |
| AAAGGTTTGCATCTAGGGAT+GGG | 0.544209 | 3.1:-92944580 | None:intergenic |
| GACGAGATCGTGAAACTGAT+AGG | 0.544346 | 3.1:+92944361 | MS.gene92747:CDS |
| AAGAACAATTGCACCTTCTG+TGG | 0.546819 | 3.1:+92944388 | MS.gene92747:CDS |
| TTTGCCGCCGGAAGCTCCGA+TGG | 0.549277 | 3.1:-92944140 | None:intergenic |
| GGTCGCCGCGGTTGAAGAGG+CGG | 0.550640 | 3.1:-92944111 | None:intergenic |
| TTCCTCCTCTCCGTCGACGA+GGG | 0.558587 | 3.1:+92944229 | MS.gene92747:CDS |
| TGCCTAAATTGGGAATTGGA+CGG | 0.566018 | 3.1:+92945326 | MS.gene92747:CDS |
| TGCCCTCGTCGACGGAGAGG+AGG | 0.566136 | 3.1:-92944231 | None:intergenic |
| TCCGTCGACGAGGGCATCAC+CGG | 0.572273 | 3.1:+92944238 | MS.gene92747:CDS |
| TATGTTTAACAGCACCGTCT+CGG | 0.572864 | 3.1:-92944497 | None:intergenic |
| CGTCGGCAGGCACTGGATCG+AGG | 0.573771 | 3.1:+92944418 | MS.gene92747:CDS |
| TCTCAAAGTCGTATCCTACA+AGG | 0.578252 | 3.1:+92944318 | MS.gene92747:CDS |
| TTGTAGGATACGACTTTGAG+AGG | 0.578638 | 3.1:-92944316 | None:intergenic |
| GGATTTGTACGGTTGGACGA+TGG | 0.580613 | 3.1:+92944339 | MS.gene92747:CDS |
| CGCGGACGACATAGCCGAGA+CGG | 0.583581 | 3.1:+92944483 | MS.gene92747:CDS |
| GTATCCTACAAGGATTTGTA+CGG | 0.586222 | 3.1:+92944328 | MS.gene92747:CDS |
| CCGACGGAACACTCCACAGA+AGG | 0.595144 | 3.1:-92944401 | None:intergenic |
| CTGCTTGATGGATTGAATCG+AGG | 0.595468 | 3.1:+92945301 | MS.gene92747:CDS |
| TGGAGAATAAATGCATTCAG+TGG | 0.598543 | 3.1:-92944665 | None:intergenic |
| TATTCTCCAAATGCTTATCG+TGG | 0.598636 | 3.1:+92944679 | MS.gene92747:CDS |
| GGATAAGACGTAAGCAAGGA+CGG | 0.599686 | 3.1:-92944170 | None:intergenic |
| GTCGCCATCGGAGCTTCCGG+CGG | 0.601734 | 3.1:+92944136 | MS.gene92747:CDS |
| CTTCCTCCTCTCCGTCGACG+AGG | 0.602940 | 3.1:+92944228 | MS.gene92747:CDS |
| ATTCCTGAAAGCAGATAAAG+TGG | 0.603419 | 3.1:+92944447 | MS.gene92747:CDS |
| CCTACAAGGATTTGTACGGT+TGG | 0.611193 | 3.1:+92944332 | MS.gene92747:CDS |
| TATTCTATTATGCAGACCCA+GGG | 0.611624 | 3.1:+92944812 | MS.gene92747:intron |
| CGGAGAGGAGGAAGAGATGG+AGG | 0.612018 | 3.1:-92944219 | None:intergenic |
| ACTACCAAAATGCCTGAACA+GGG | 0.612299 | 3.1:+92944882 | MS.gene92747:CDS |
| AAGCAGATAAAGTGGTGACT+GGG | 0.631961 | 3.1:+92944455 | MS.gene92747:CDS |
| AAGGAAGAAAATGAAAGCCA+TGG | 0.643913 | 3.1:+92945370 | MS.gene92747:CDS |
| GCAGGCACTGGATCGAGGAG+CGG | 0.649461 | 3.1:+92944423 | MS.gene92747:CDS |
| TGATGCCCTCGTCGACGGAG+AGG | 0.650221 | 3.1:-92944234 | None:intergenic |
| ATGATGTCGAGAATTGCCCT+GGG | 0.658645 | 3.1:-92944828 | None:intergenic |
| GTTTGGATAAGACGTAAGCA+AGG | 0.664538 | 3.1:-92944174 | None:intergenic |
| CGATGGCGACTCGGTCGCCG+CGG | 0.670605 | 3.1:-92944123 | None:intergenic |
| TCTCGACATCATCAAATCAG+GGG | 0.678875 | 3.1:+92944839 | MS.gene92747:CDS |
| AGCATTGAGAGCAAACAATG+TGG | 0.682742 | 3.1:+92945400 | MS.gene92747:CDS |
| TATAACCGCCTCTTCAACCG+CGG | 0.685462 | 3.1:+92944106 | MS.gene92747:CDS |
| GGAGGCCGTAATCGTGAACG+CGG | 0.731405 | 3.1:-92944201 | None:intergenic |
| CAGGGAATGTGTGAACGCTG+TGG | 0.737088 | 3.1:+92944900 | MS.gene92747:CDS |
| CGGTTTCAAGAGAATCGTCG+CGG | 0.750921 | 3.1:-92944264 | None:intergenic |
| AGTGGTGACTGGGCACAACG+CGG | 0.767399 | 3.1:+92944465 | MS.gene92747:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAATATATATGAATATG+AGG | - | chr3.1:92944800-92944819 | None:intergenic | 15.0% |
| !! | CAAAAGAAAACAAAAAATAA+AGG | - | chr3.1:92945130-92945149 | None:intergenic | 15.0% |
| !!! | ATAATATGAAACAAAGTTTT+AGG | - | chr3.1:92944963-92944982 | None:intergenic | 15.0% |
| !!! | TAATATGAAACAAAGTTTTA+GGG | - | chr3.1:92944962-92944981 | None:intergenic | 15.0% |
| !!! | AATATTGAGTTGAAAATCAA+AGG | - | chr3.1:92945074-92945093 | None:intergenic | 20.0% |
| ! | AATATATATGAATATGAGGC+TGG | - | chr3.1:92944796-92944815 | None:intergenic | 25.0% |
| ! | AATTACAATACAACCAATTG+AGG | - | chr3.1:92945153-92945172 | None:intergenic | 25.0% |
| ! | AATTGGTTGTATTGTAATTC+AGG | + | chr3.1:92945154-92945173 | MS.gene92747:intron | 25.0% |
| !! | TTTCAAGTACACTTATGAAA+AGG | + | chr3.1:92944600-92944619 | MS.gene92747:CDS | 25.0% |
| !! | TTTTCATAAGTGTACTTGAA+AGG | - | chr3.1:92944601-92944620 | None:intergenic | 25.0% |
| !!! | TACTTTTTCATGTACAGAAA+TGG | + | chr3.1:92945263-92945282 | MS.gene92747:intron | 25.0% |
| CATAGAAATCAGATTGAGTA+TGG | + | chr3.1:92944289-92944308 | MS.gene92747:CDS | 30.0% | |
| CTCAATCTGATTTCTATGAA+CGG | - | chr3.1:92944287-92944306 | None:intergenic | 30.0% | |
| ! | GTGCTGTTAAACATATTAAG+AGG | + | chr3.1:92944505-92944524 | MS.gene92747:CDS | 30.0% |
| ! | TTGTTTTCTTTTGCCTCAAT+TGG | + | chr3.1:92945137-92945156 | MS.gene92747:intron | 30.0% |
| !!! | ATGAAACAAAGTTTTAGGGA+TGG | - | chr3.1:92944958-92944977 | None:intergenic | 30.0% |
| AAACAATTCCCAACATAAGC+AGG | + | chr3.1:92945041-92945060 | MS.gene92747:intron | 35.0% | |
| AAGGAAGAAAATGAAAGCCA+TGG | + | chr3.1:92945370-92945389 | MS.gene92747:CDS | 35.0% | |
| AATCGAGGTTTGCCTAAATT+GGG | + | chr3.1:92945316-92945335 | MS.gene92747:CDS | 35.0% | |
| ACTTGAAAGGTTTGCATCTA+GGG | - | chr3.1:92944588-92944607 | None:intergenic | 35.0% | |
| AGATGCAGTTCAATCATAAC+AGG | + | chr3.1:92944547-92944566 | MS.gene92747:CDS | 35.0% | |
| ATATTCTATTATGCAGACCC+AGG | + | chr3.1:92944811-92944830 | MS.gene92747:intron | 35.0% | |
| ATTCCTGAAAGCAGATAAAG+TGG | + | chr3.1:92944447-92944466 | MS.gene92747:CDS | 35.0% | |
| ATTCTCGACATCATCAAATC+AGG | + | chr3.1:92944837-92944856 | MS.gene92747:CDS | 35.0% | |
| ATTCTCTGCAAATCTGTTGA+AGG | - | chr3.1:92944042-92944061 | None:intergenic | 35.0% | |
| GAACCAAGAGTGAAATCAAA+GGG | - | chr3.1:92945215-92945234 | None:intergenic | 35.0% | |
| GTATCCTACAAGGATTTGTA+CGG | + | chr3.1:92944328-92944347 | MS.gene92747:CDS | 35.0% | |
| GTTGGGAATTGTTTATACAG+TGG | - | chr3.1:92945035-92945054 | None:intergenic | 35.0% | |
| TACTTGAAAGGTTTGCATCT+AGG | - | chr3.1:92944589-92944608 | None:intergenic | 35.0% | |
| TATTCTATTATGCAGACCCA+GGG | + | chr3.1:92944812-92944831 | MS.gene92747:intron | 35.0% | |
| TATTCTCCAAATGCTTATCG+TGG | + | chr3.1:92944679-92944698 | MS.gene92747:CDS | 35.0% | |
| TCAATCATAACAGGTGAAGA+TGG | + | chr3.1:92944556-92944575 | MS.gene92747:CDS | 35.0% | |
| TGAACCAAGAGTGAAATCAA+AGG | - | chr3.1:92945216-92945235 | None:intergenic | 35.0% | |
| TGGAGAATAAATGCATTCAG+TGG | - | chr3.1:92944668-92944687 | None:intergenic | 35.0% | |
| TTCTCGACATCATCAAATCA+GGG | + | chr3.1:92944838-92944857 | MS.gene92747:CDS | 35.0% | |
| TTCTCTGCAAATCTGTTGAA+GGG | - | chr3.1:92944041-92944060 | None:intergenic | 35.0% | |
| ! | ATTTTCTTCCTTGCAACCAA+TGG | - | chr3.1:92945362-92945381 | None:intergenic | 35.0% |
| ! | CAAATCTGTTGAAGGGTTTT+AGG | - | chr3.1:92944034-92944053 | None:intergenic | 35.0% |
| !! | CTGTGGTTATATTTCTAGTC+AGG | + | chr3.1:92944917-92944936 | MS.gene92747:CDS | 35.0% |
| AAAGCAGATAAAGTGGTGAC+TGG | + | chr3.1:92944454-92944473 | MS.gene92747:CDS | 40.0% | |
| AAAGCTTGTGTTCTGCTTGA+TGG | + | chr3.1:92945289-92945308 | MS.gene92747:CDS | 40.0% | |
| AAAGGTTTGCATCTAGGGAT+GGG | - | chr3.1:92944583-92944602 | None:intergenic | 40.0% | |
| AAGAACAATTGCACCTTCTG+TGG | + | chr3.1:92944388-92944407 | MS.gene92747:CDS | 40.0% | |
| AAGCAGATAAAGTGGTGACT+GGG | + | chr3.1:92944455-92944474 | MS.gene92747:CDS | 40.0% | |
| ACTACCAAAATGCCTGAACA+GGG | + | chr3.1:92944882-92944901 | MS.gene92747:CDS | 40.0% | |
| GAATCGAGGTTTGCCTAAAT+TGG | + | chr3.1:92945315-92945334 | MS.gene92747:CDS | 40.0% | |
| GACATAAGCCTGCTTATGTT+GGG | - | chr3.1:92945052-92945071 | None:intergenic | 40.0% | |
| GCAAAACCACGATAAGCATT+TGG | - | chr3.1:92944688-92944707 | None:intergenic | 40.0% | |
| GGTTTGCCTAAATTGGGAAT+TGG | + | chr3.1:92945322-92945341 | MS.gene92747:CDS | 40.0% | |
| GTTTGGATAAGACGTAAGCA+AGG | - | chr3.1:92944177-92944196 | None:intergenic | 40.0% | |
| TATGTTTAACAGCACCGTCT+CGG | - | chr3.1:92944500-92944519 | None:intergenic | 40.0% | |
| TCAAGGATTTGGAGAGAATC+AGG | + | chr3.1:92944719-92944738 | MS.gene92747:CDS | 40.0% | |
| TCACCACTTTATCTGCTTTC+AGG | - | chr3.1:92944453-92944472 | None:intergenic | 40.0% | |
| TCGTGAGTTCATCAAGGATT+TGG | + | chr3.1:92944708-92944727 | MS.gene92747:CDS | 40.0% | |
| TCTCAAAGTCGTATCCTACA+AGG | + | chr3.1:92944318-92944337 | MS.gene92747:CDS | 40.0% | |
| TCTCAATGCTCTTTGTTCCA+TGG | - | chr3.1:92945390-92945409 | None:intergenic | 40.0% | |
| TCTCGACATCATCAAATCAG+GGG | + | chr3.1:92944839-92944858 | MS.gene92747:CDS | 40.0% | |
| TGCCTAAATTGGGAATTGGA+CGG | + | chr3.1:92945326-92945345 | MS.gene92747:CDS | 40.0% | |
| TTGTAGGATACGACTTTGAG+AGG | - | chr3.1:92944319-92944338 | None:intergenic | 40.0% | |
| ! | AGCATTGAGAGCAAACAATG+TGG | + | chr3.1:92945400-92945419 | MS.gene92747:CDS | 40.0% |
| ! | TCTCCCTTTGATTTCACTCT+TGG | + | chr3.1:92945209-92945228 | MS.gene92747:intron | 40.0% |
| ! | TTTTGCTCGTGAGTTCATCA+AGG | + | chr3.1:92944702-92944721 | MS.gene92747:CDS | 40.0% |
| AATTGGGAATTGGACGGAGT+CGG | + | chr3.1:92945332-92945351 | MS.gene92747:CDS | 45.0% | |
| ATGAGGCTGGCAGTAAGTAA+TGG | - | chr3.1:92944783-92944802 | None:intergenic | 45.0% | |
| ATGATGTCGAGAATTGCCCT+GGG | - | chr3.1:92944831-92944850 | None:intergenic | 45.0% | |
| CACTACCAAAATGCCTGAAC+AGG | + | chr3.1:92944881-92944900 | MS.gene92747:CDS | 45.0% | |
| CCAACCGTACAAATCCTTGT+AGG | - | chr3.1:92944335-92944354 | None:intergenic | 45.0% | |
| CCTACAAGGATTTGTACGGT+TGG | + | chr3.1:92944332-92944351 | MS.gene92747:CDS | 45.0% | |
| CTCCGTCCAATTCCCAATTT+AGG | - | chr3.1:92945331-92945350 | None:intergenic | 45.0% | |
| GAAAGGTTTGCATCTAGGGA+TGG | - | chr3.1:92944584-92944603 | None:intergenic | 45.0% | |
| GACGAGATCGTGAAACTGAT+AGG | + | chr3.1:92944361-92944380 | MS.gene92747:CDS | 45.0% | |
| GGACATAAGCCTGCTTATGT+TGG | - | chr3.1:92945053-92945072 | None:intergenic | 45.0% | |
| GGATAAGACGTAAGCAAGGA+CGG | - | chr3.1:92944173-92944192 | None:intergenic | 45.0% | |
| ! | CATTCCCTGTTCAGGCATTT+TGG | - | chr3.1:92944889-92944908 | None:intergenic | 45.0% |
| !! | CTGCTTGATGGATTGAATCG+AGG | + | chr3.1:92945301-92945320 | MS.gene92747:CDS | 45.0% |
| !! | CTGTTCAGGCATTTTGGTAG+TGG | - | chr3.1:92944883-92944902 | None:intergenic | 45.0% |
| ATCGTGAACGCGGTTGAGTT+TGG | - | chr3.1:92944194-92944213 | None:intergenic | 50.0% | |
| ATTGGGAATTGGACGGAGTC+GGG | + | chr3.1:92945333-92945352 | MS.gene92747:CDS | 50.0% | |
| CGGTTTCAAGAGAATCGTCG+CGG | - | chr3.1:92944267-92944286 | None:intergenic | 50.0% | |
| CGTTCACACATTCCCTGTTC+AGG | - | chr3.1:92944897-92944916 | None:intergenic | 50.0% | |
| CTCAACCGCGTTCACGATTA+CGG | + | chr3.1:92944196-92944215 | MS.gene92747:CDS | 50.0% | |
| GATGATGTCGAGAATTGCCC+TGG | - | chr3.1:92944832-92944851 | None:intergenic | 50.0% | |
| GGATTTGTACGGTTGGACGA+TGG | + | chr3.1:92944339-92944358 | MS.gene92747:CDS | 50.0% | |
| TATAACCGCCTCTTCAACCG+CGG | + | chr3.1:92944106-92944125 | MS.gene92747:CDS | 50.0% | |
| AAGAGAATCGTCGCGGTAGC+CGG | - | chr3.1:92944260-92944279 | None:intergenic | 55.0% | |
| CAGGGAATGTGTGAACGCTG+TGG | + | chr3.1:92944900-92944919 | MS.gene92747:CDS | 55.0% | |
| ! | CCTTCTGTGGAGTGTTCCGT+CGG | + | chr3.1:92944401-92944420 | MS.gene92747:CDS | 55.0% |
| ! | TCGGGTTGCCATTGGTTGCA+AGG | + | chr3.1:92945351-92945370 | MS.gene92747:CDS | 55.0% |
| AGTGGTGACTGGGCACAACG+CGG | + | chr3.1:92944465-92944484 | MS.gene92747:CDS | 60.0% | |
| CCGACGGAACACTCCACAGA+AGG | - | chr3.1:92944404-92944423 | None:intergenic | 60.0% | |
| CGACGGAGAGGAGGAAGAGA+TGG | - | chr3.1:92944225-92944244 | None:intergenic | 60.0% | |
| CGGAGAGGAGGAAGAGATGG+AGG | - | chr3.1:92944222-92944241 | None:intergenic | 60.0% | |
| GACGGTTGAGTCTTTGCCGC+CGG | - | chr3.1:92944155-92944174 | None:intergenic | 60.0% | |
| GGAGGCCGTAATCGTGAACG+CGG | - | chr3.1:92944204-92944223 | None:intergenic | 60.0% | |
| TTCCTCCTCTCCGTCGACGA+GGG | + | chr3.1:92944229-92944248 | MS.gene92747:CDS | 60.0% | |
| AGTGTTCCGTCGGCAGGCAC+TGG | + | chr3.1:92944411-92944430 | MS.gene92747:CDS | 65.0% | |
| CGAGTCGCCATCGGAGCTTC+CGG | + | chr3.1:92944133-92944152 | MS.gene92747:CDS | 65.0% | |
| CGCGGACGACATAGCCGAGA+CGG | + | chr3.1:92944483-92944502 | MS.gene92747:CDS | 65.0% | |
| CGGAAGCTCCGATGGCGACT+CGG | - | chr3.1:92944135-92944154 | None:intergenic | 65.0% | |
| CTCGATCCAGTGCCTGCCGA+CGG | - | chr3.1:92944420-92944439 | None:intergenic | 65.0% | |
| CTTCCTCCTCTCCGTCGACG+AGG | + | chr3.1:92944228-92944247 | MS.gene92747:CDS | 65.0% | |
| TGATGCCCTCGTCGACGGAG+AGG | - | chr3.1:92944237-92944256 | None:intergenic | 65.0% | |
| TTTGCCGCCGGAAGCTCCGA+TGG | - | chr3.1:92944143-92944162 | None:intergenic | 65.0% | |
| ! | CTGTGGAGTGTTCCGTCGGC+AGG | + | chr3.1:92944405-92944424 | MS.gene92747:CDS | 65.0% |
| ! | GGACGGAGTCGGGTTGCCAT+TGG | + | chr3.1:92945343-92945362 | MS.gene92747:CDS | 65.0% |
| !! | GCAGGCACTGGATCGAGGAG+CGG | + | chr3.1:92944423-92944442 | MS.gene92747:CDS | 65.0% |
| !! | TCCGTCGACGAGGGCATCAC+CGG | + | chr3.1:92944238-92944257 | MS.gene92747:CDS | 65.0% |
| CTCGGTCGCCGCGGTTGAAG+AGG | - | chr3.1:92944117-92944136 | None:intergenic | 70.0% | |
| GCCGGTGATGCCCTCGTCGA+CGG | - | chr3.1:92944242-92944261 | None:intergenic | 70.0% | |
| GGTCGCCGCGGTTGAAGAGG+CGG | - | chr3.1:92944114-92944133 | None:intergenic | 70.0% | |
| GTCGCCATCGGAGCTTCCGG+CGG | + | chr3.1:92944136-92944155 | MS.gene92747:CDS | 70.0% | |
| TGCCCTCGTCGACGGAGAGG+AGG | - | chr3.1:92944234-92944253 | None:intergenic | 70.0% | |
| !! | CGTCGGCAGGCACTGGATCG+AGG | + | chr3.1:92944418-92944437 | MS.gene92747:CDS | 70.0% |
| CGCGGCGACCGAGTCGCCAT+CGG | + | chr3.1:92944124-92944143 | MS.gene92747:CDS | 75.0% | |
| !! | CGATGGCGACTCGGTCGCCG+CGG | - | chr3.1:92944126-92944145 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92943989 | 92945438 | 92943989 | ID=MS.gene92747 |
| chr3.1 | mRNA | 92943989 | 92945438 | 92943989 | ID=MS.gene92747.t1;Parent=MS.gene92747 |
| chr3.1 | exon | 92943989 | 92944740 | 92943989 | ID=MS.gene92747.t1.exon1;Parent=MS.gene92747.t1 |
| chr3.1 | CDS | 92943989 | 92944740 | 92943989 | ID=cds.MS.gene92747.t1;Parent=MS.gene92747.t1 |
| chr3.1 | exon | 92944827 | 92944938 | 92944827 | ID=MS.gene92747.t1.exon2;Parent=MS.gene92747.t1 |
| chr3.1 | CDS | 92944827 | 92944938 | 92944827 | ID=cds.MS.gene92747.t1;Parent=MS.gene92747.t1 |
| chr3.1 | exon | 92945280 | 92945438 | 92945280 | ID=MS.gene92747.t1.exon3;Parent=MS.gene92747.t1 |
| chr3.1 | CDS | 92945280 | 92945438 | 92945280 | ID=cds.MS.gene92747.t1;Parent=MS.gene92747.t1 |
| Gene Sequence |
| Protein sequence |
