Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93335.t1 | XP_013467444.1 | 96.7 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 1.90E-296 | 1027.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93335.t1 | P45951 | 61.7 | 460 | 164 | 3 | 86 | 542 | 86 | 536 | 1.7e-160 | 567.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93335.t1 | A0A072VIQ1 | 96.7 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 1.4e-296 | 1027.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene20956 | MS.gene93335 | PPI |
MS.gene005383 | MS.gene93335 | PPI |
MS.gene21089 | MS.gene93335 | PPI |
MS.gene04418 | MS.gene93335 | PPI |
MS.gene05640 | MS.gene93335 | PPI |
MS.gene58439 | MS.gene93335 | PPI |
MS.gene04079 | MS.gene93335 | PPI |
MS.gene08109 | MS.gene93335 | PPI |
MS.gene033130 | MS.gene93335 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93335.t1 | MTR_1g051380 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1076 |
MS.gene93335.t1 | MTR_1g051380 | 96.844 | 507 | 16 | 0 | 36 | 542 | 1 | 507 | 0.0 | 1008 |
MS.gene93335.t1 | MTR_3g075220 | 29.524 | 315 | 160 | 14 | 282 | 538 | 43 | 353 | 3.36e-25 | 107 |
MS.gene93335.t1 | MTR_8g075810 | 29.167 | 288 | 147 | 13 | 282 | 521 | 1 | 279 | 9.94e-22 | 99.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93335.t1 | AT2G41460 | 61.739 | 460 | 164 | 3 | 86 | 542 | 79 | 529 | 0.0 | 590 |
MS.gene93335.t1 | AT2G41460 | 61.739 | 460 | 164 | 3 | 86 | 542 | 39 | 489 | 0.0 | 589 |
MS.gene93335.t1 | AT2G41460 | 61.739 | 460 | 164 | 3 | 86 | 542 | 86 | 536 | 0.0 | 589 |
MS.gene93335.t1 | AT2G41460 | 53.086 | 324 | 140 | 3 | 86 | 406 | 86 | 400 | 5.66e-112 | 339 |
MS.gene93335.t1 | AT3G60950 | 66.316 | 95 | 26 | 2 | 361 | 449 | 502 | 596 | 5.80e-30 | 124 |
MS.gene93335.t1 | AT3G48425 | 29.260 | 311 | 163 | 14 | 283 | 540 | 44 | 350 | 3.60e-24 | 104 |
MS.gene93335.t1 | AT3G61030 | 39.098 | 133 | 62 | 5 | 296 | 422 | 389 | 508 | 1.44e-12 | 70.5 |
Find 111 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTCTAAGCTTGGTTATTC+TGG | 0.175376 | 1.3:+33299498 | MS.gene93335:CDS |
GTTAAATCAGATGAGGTTTC+AGG | 0.209613 | 1.3:+33296225 | MS.gene93335:CDS |
TTTCAATTCTCAGGAGTATA+AGG | 0.239708 | 1.3:+33295730 | MS.gene93335:intron |
TTCAATGTCTTCCGGAGTTC+TGG | 0.247467 | 1.3:-33295616 | None:intergenic |
TGAATTTGAAAAGGGTCTTT+TGG | 0.255861 | 1.3:-33294720 | None:intergenic |
GACCTTAACAGTATGATTCT+TGG | 0.285369 | 1.3:-33294816 | None:intergenic |
ACGGGATACGTGCCTAATTC+TGG | 0.315107 | 1.3:+33300153 | MS.gene93335:CDS |
TGTTGTTGGATATACTTATT+GGG | 0.316446 | 1.3:+33301835 | MS.gene93335:CDS |
ATGTTGTTGGATATACTTAT+TGG | 0.333277 | 1.3:+33301834 | MS.gene93335:CDS |
GACCTCAAAAGATGATGAAA+TGG | 0.348075 | 1.3:-33294750 | None:intergenic |
GATATACTTATTGGGGTTAT+CGG | 0.349282 | 1.3:+33301843 | MS.gene93335:CDS |
GGTGGTGGTCTCATAGTTCT+AGG | 0.354792 | 1.3:-33296570 | None:intergenic |
GTCTGCCTTGAAGAATTTCA+TGG | 0.355163 | 1.3:+33295785 | MS.gene93335:CDS |
CGACTTACTTCAATGTCTTC+CGG | 0.366924 | 1.3:-33295624 | None:intergenic |
TACATTCTCCCTGATGTGAT+TGG | 0.367233 | 1.3:+33302379 | MS.gene93335:CDS |
AAGCCTCTTTCAATTAGATA+TGG | 0.372873 | 1.3:+33300060 | MS.gene93335:CDS |
ATGGCTATGAGAACAGCTTT+TGG | 0.382451 | 1.3:+33299466 | MS.gene93335:CDS |
AAGATCCTCTTTACGACCTT+TGG | 0.382891 | 1.3:-33295760 | None:intergenic |
GAGAGCGTTGCTAAAATTAG+AGG | 0.387103 | 1.3:+33296647 | MS.gene93335:CDS |
TTCAAGCCATCGCCAGAATT+AGG | 0.403717 | 1.3:-33300165 | None:intergenic |
ATGAATGCTGAAAAGGTATC+AGG | 0.411178 | 1.3:+33296075 | MS.gene93335:CDS |
TACATCGAAGTCTTCCCTTT+GGG | 0.412794 | 1.3:-33296691 | None:intergenic |
ACTTAATCTTTCAATCTCAA+TGG | 0.416128 | 1.3:-33295560 | None:intergenic |
GGTTTGCTTCTAAACCTTTG+AGG | 0.420980 | 1.3:-33294787 | None:intergenic |
TTCAAATAATTGCTGAGAGC+TGG | 0.424423 | 1.3:-33300331 | None:intergenic |
AGCTTCATAACGAGGCCAAT+TGG | 0.426579 | 1.3:-33302415 | None:intergenic |
TGATCGCTCCCAATCACATC+AGG | 0.432864 | 1.3:-33302388 | None:intergenic |
TGAGACCACCACCTCTTTCT+CGG | 0.433082 | 1.3:+33296580 | MS.gene93335:CDS |
CAACCTCTTTCAATCTTACC+AGG | 0.435917 | 1.3:+33294475 | MS.gene93335:CDS |
CTTGCAAGAGACTAAACTTC+AGG | 0.435926 | 1.3:+33296719 | MS.gene93335:CDS |
TTCAATTCTCAGGAGTATAA+GGG | 0.436894 | 1.3:+33295731 | MS.gene93335:intron |
GGGAGCGATCATTGTCCAAT+TGG | 0.438960 | 1.3:+33302400 | MS.gene93335:CDS |
ACATGTAGTGTTTCTAAGCT+TGG | 0.442260 | 1.3:+33299489 | MS.gene93335:CDS |
TTTAGAAATGAATGCTGAAA+AGG | 0.444120 | 1.3:+33296068 | MS.gene93335:CDS |
ATACATCGAAGTCTTCCCTT+TGG | 0.444759 | 1.3:-33296692 | None:intergenic |
TTCCAAGAATCATACTGTTA+AGG | 0.445894 | 1.3:+33294814 | MS.gene93335:CDS |
ATTGTCCATGAAATTCTTCA+AGG | 0.446973 | 1.3:-33295790 | None:intergenic |
ATCGTGAACTTTGTCAGCTA+TGG | 0.447234 | 1.3:-33302353 | None:intergenic |
TAAGTATATCCAACAACATC+AGG | 0.448318 | 1.3:-33301830 | None:intergenic |
ATTGGGGTTATCGGCATGGC+GGG | 0.449448 | 1.3:+33301852 | MS.gene93335:CDS |
CCTTTCTTCATCTGTGAACC+CGG | 0.456440 | 1.3:-33301747 | None:intergenic |
AAGCAGCATCCTGATGTTGT+TGG | 0.457164 | 1.3:+33301821 | MS.gene93335:CDS |
ATAAAACAGCGACTGATAGA+TGG | 0.463114 | 1.3:+33299447 | MS.gene93335:CDS |
TGCTCACAAGAAACCTCAAA+AGG | 0.467136 | 1.3:+33296530 | MS.gene93335:CDS |
AGCACTTCAACTTGCCCAAA+GGG | 0.471108 | 1.3:+33296677 | MS.gene93335:CDS |
GCATTTGAGTAGAAAGAGCT+TGG | 0.475033 | 1.3:+33294667 | MS.gene93335:CDS |
TCTTGATTATTTCCTTGTCT+CGG | 0.481191 | 1.3:+33302327 | MS.gene93335:CDS |
GGTTGTGATGAATTTGAAAA+GGG | 0.484462 | 1.3:-33294728 | None:intergenic |
ACAAGAAACCTCAAAAGGAT+TGG | 0.484591 | 1.3:+33296535 | MS.gene93335:CDS |
GGGTTGTGATGAATTTGAAA+AGG | 0.486009 | 1.3:-33294729 | None:intergenic |
ACATTCTCCCTGATGTGATT+GGG | 0.486272 | 1.3:+33302380 | MS.gene93335:CDS |
CAGGGTAACAAAAGGAGTGC+CGG | 0.499539 | 1.3:+33301728 | MS.gene93335:intron |
TGTCTAAGTGTGAAAGCAAT+GGG | 0.501365 | 1.3:+33294695 | MS.gene93335:CDS |
AGTCTTACAGAGTGACAGAA+TGG | 0.502399 | 1.3:+33300305 | MS.gene93335:intron |
GAGACCACCACCTCTTTCTC+GGG | 0.508355 | 1.3:+33296581 | MS.gene93335:CDS |
TCCTCTTTACGACCTTTGGC+AGG | 0.508456 | 1.3:-33295756 | None:intergenic |
ATGTAGGAAAATGATGTTGA+TGG | 0.510524 | 1.3:+33295532 | MS.gene93335:intron |
AAGAAGGATGTGAGCCTCAA+AGG | 0.514227 | 1.3:+33294773 | MS.gene93335:CDS |
ATCAGGATGCTGCTTTCTAA+AGG | 0.515908 | 1.3:-33301813 | None:intergenic |
ACCTCAAAAGATGATGAAAT+GGG | 0.521460 | 1.3:-33294749 | None:intergenic |
CGACTGTTCAAACTGAAACA+TGG | 0.521592 | 1.3:+33296499 | MS.gene93335:CDS |
ACAGTATGATTCTTGGAACC+AGG | 0.522628 | 1.3:-33294809 | None:intergenic |
AGATCACCCGTCAAAACTAC+AGG | 0.527238 | 1.3:-33301211 | None:intergenic |
TTCATGGACAATAATATAAG+TGG | 0.528120 | 1.3:+33295801 | MS.gene93335:CDS |
GTCATGGTGTCTACTATAGC+CGG | 0.532292 | 1.3:-33295589 | None:intergenic |
TGTATTCGCAGGGTAACAAA+AGG | 0.533006 | 1.3:+33301720 | MS.gene93335:intron |
GTCTTACAGAGTGACAGAAT+GGG | 0.536495 | 1.3:+33300306 | MS.gene93335:intron |
CTTTCAATTAGATATGGCCT+AGG | 0.540884 | 1.3:+33300066 | MS.gene93335:CDS |
CTGGAACAGCAATAATCTCA+AGG | 0.542369 | 1.3:+33299517 | MS.gene93335:CDS |
CCGGGTTCACAGATGAAGAA+AGG | 0.543117 | 1.3:+33301747 | MS.gene93335:CDS |
AGGGTAACAAAAGGAGTGCC+GGG | 0.545217 | 1.3:+33301729 | MS.gene93335:intron |
CAGCACTTCAACTTGCCCAA+AGG | 0.556398 | 1.3:+33296676 | MS.gene93335:CDS |
CCGGAGTTCTGGAACAGTCA+TGG | 0.558431 | 1.3:-33295605 | None:intergenic |
AGGCCATATCTAATTGAAAG+AGG | 0.560635 | 1.3:-33300063 | None:intergenic |
CAGTATGATTCTTGGAACCA+GGG | 0.563347 | 1.3:-33294808 | None:intergenic |
AAACCTGGTAAGATTGAAAG+AGG | 0.564486 | 1.3:-33294478 | None:intergenic |
TGGCGATGGCTTGAAAAGAC+TGG | 0.573333 | 1.3:+33300173 | MS.gene93335:CDS |
TACGTGCCTAATTCTGGCGA+TGG | 0.574254 | 1.3:+33300159 | MS.gene93335:CDS |
AGAGCGTTGCTAAAATTAGA+GGG | 0.574809 | 1.3:+33296648 | MS.gene93335:CDS |
AAGTTTGTATCCCGAGAAAG+AGG | 0.582399 | 1.3:-33296591 | None:intergenic |
ACTTATTGGGGTTATCGGCA+TGG | 0.586656 | 1.3:+33301848 | MS.gene93335:CDS |
TATATCTGAACATGATAGTG+AGG | 0.588535 | 1.3:+33300089 | MS.gene93335:CDS |
TCCTGCCAAAGGTCGTAAAG+AGG | 0.591395 | 1.3:+33295755 | MS.gene93335:CDS |
TCATGGTGTCTACTATAGCC+GGG | 0.593619 | 1.3:-33295588 | None:intergenic |
GTATCCCGAGAAAGAGGTGG+TGG | 0.601084 | 1.3:-33296585 | None:intergenic |
AGTATAAGGGTTCCTGCCAA+AGG | 0.603614 | 1.3:+33295744 | MS.gene93335:CDS |
CCATGACTGTTCCAGAACTC+CGG | 0.606127 | 1.3:+33295605 | MS.gene93335:CDS |
TATCATGTTCAGATATACCT+AGG | 0.608467 | 1.3:-33300083 | None:intergenic |
TTGTCTAAGTGTGAAAGCAA+TGG | 0.608644 | 1.3:+33294694 | MS.gene93335:CDS |
AGAGACGGTTGAACTTAACC+AGG | 0.609303 | 1.3:+33296131 | MS.gene93335:CDS |
GGTATCAGGTGAAGAGCCTG+TGG | 0.615370 | 1.3:+33296089 | MS.gene93335:CDS |
GCTGATAGTTAAATCAGATG+AGG | 0.615656 | 1.3:+33296218 | MS.gene93335:CDS |
TGGAACAGCAATAATCTCAA+GGG | 0.616962 | 1.3:+33299518 | MS.gene93335:CDS |
CAGCTATGGATTCCGAGACA+AGG | 0.621221 | 1.3:-33302339 | None:intergenic |
GTATCATCAACTTCACCCAC+AGG | 0.621362 | 1.3:-33296105 | None:intergenic |
AACTTAACCAGGGTAAGAGA+AGG | 0.621481 | 1.3:+33296142 | MS.gene93335:CDS |
GTTGTTGGATATACTTATTG+GGG | 0.630799 | 1.3:+33301836 | MS.gene93335:CDS |
TGAAAGATTAAGTAATGACC+CGG | 0.634324 | 1.3:+33295570 | MS.gene93335:CDS |
TATTGGGGTTATCGGCATGG+CGG | 0.655289 | 1.3:+33301851 | MS.gene93335:CDS |
ATATCTGAACATGATAGTGA+GGG | 0.655295 | 1.3:+33300090 | MS.gene93335:CDS |
AGTTGATGATACTCTAGAGA+CGG | 0.665969 | 1.3:+33296116 | MS.gene93335:CDS |
AAAGGTTTAGAAGCAAACCC+TGG | 0.666896 | 1.3:+33294791 | MS.gene93335:CDS |
GATCGCTCCCAATCACATCA+GGG | 0.672310 | 1.3:-33302387 | None:intergenic |
AGATTTAGAGCTTCATAACG+AGG | 0.673201 | 1.3:-33302423 | None:intergenic |
TTTGTATCCCGAGAAAGAGG+TGG | 0.675715 | 1.3:-33296588 | None:intergenic |
TCTCAAATTAGAGACGAACA+AGG | 0.683995 | 1.3:+33296018 | MS.gene93335:CDS |
GTATCAGGTGAAGAGCCTGT+GGG | 0.705212 | 1.3:+33296090 | MS.gene93335:CDS |
CTAACAGGAGAAGGATATCG+AGG | 0.709614 | 1.3:+33299422 | MS.gene93335:intron |
GGCGGGCGCAAGTATAACAG+AGG | 0.726417 | 1.3:+33301869 | MS.gene93335:CDS |
GAGACGGTTGAACTTAACCA+GGG | 0.738208 | 1.3:+33296132 | MS.gene93335:CDS |
GTCTAAGTGTGAAAGCAATG+GGG | 0.783073 | 1.3:+33294696 | MS.gene93335:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 33294447 | 33302441 | 33294447 | ID=MS.gene93335 |
chr1.3 | mRNA | 33294447 | 33302441 | 33294447 | ID=MS.gene93335.t1;Parent=MS.gene93335 |
chr1.3 | exon | 33294447 | 33294496 | 33294447 | ID=MS.gene93335.t1.exon1;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33294447 | 33294496 | 33294447 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33294658 | 33294835 | 33294658 | ID=MS.gene93335.t1.exon2;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33294658 | 33294835 | 33294658 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33295538 | 33295638 | 33295538 | ID=MS.gene93335.t1.exon3;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33295538 | 33295638 | 33295538 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33295743 | 33295822 | 33295743 | ID=MS.gene93335.t1.exon4;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33295743 | 33295822 | 33295743 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33296010 | 33296246 | 33296010 | ID=MS.gene93335.t1.exon5;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33296010 | 33296246 | 33296010 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33296418 | 33296740 | 33296418 | ID=MS.gene93335.t1.exon6;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33296418 | 33296740 | 33296418 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33299429 | 33299539 | 33299429 | ID=MS.gene93335.t1.exon7;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33299429 | 33299539 | 33299429 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33300057 | 33300194 | 33300057 | ID=MS.gene93335.t1.exon8;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33300057 | 33300194 | 33300057 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33300307 | 33300354 | 33300307 | ID=MS.gene93335.t1.exon9;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33300307 | 33300354 | 33300307 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33301193 | 33301273 | 33301193 | ID=MS.gene93335.t1.exon10;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33301193 | 33301273 | 33301193 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33301731 | 33301890 | 33301731 | ID=MS.gene93335.t1.exon11;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33301731 | 33301890 | 33301731 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
chr1.3 | exon | 33302320 | 33302441 | 33302320 | ID=MS.gene93335.t1.exon12;Parent=MS.gene93335.t1 |
chr1.3 | CDS | 33302320 | 33302441 | 33302320 | ID=cds.MS.gene93335.t1;Parent=MS.gene93335.t1 |
Gene Sequence |
Protein sequence |