Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93690.t1 | AET00594.2 | 90.4 | 293 | 27 | 1 | 1 | 292 | 19 | 311 | 2.70E-111 | 411.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93690.t1 | Q8LB47 | 80.9 | 131 | 25 | 0 | 157 | 287 | 188 | 318 | 6.4e-53 | 209.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93690.t1 | G7K8P1 | 90.4 | 293 | 27 | 1 | 1 | 292 | 19 | 311 | 2.0e-111 | 411.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene93690 | 0.80008 | 1.70E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene93690 | 0.823892 | 1.08E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene93690 | 0.824535 | 7.66E-54 | -1.69E-46 |
| MS.gene050201 | MS.gene93690 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene93690 | 0.801008 | 1.10E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene93690 | 0.817857 | 2.65E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene93690 | 0.821956 | 3.06E-53 | -1.69E-46 |
| MS.gene05365 | MS.gene93690 | 0.80727 | 5.49E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene93690 | 0.80693 | 6.48E-50 | -1.69E-46 |
| MS.gene057027 | MS.gene93690 | 0.803766 | 2.98E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene93690 | 0.819015 | 1.45E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene93690 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene93690 | 0.801912 | 7.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93690.t1 | MTR_5g093770 | 96.246 | 293 | 10 | 1 | 1 | 292 | 19 | 311 | 0.0 | 566 |
| MS.gene93690.t1 | MTR_3g054220 | 62.414 | 290 | 70 | 3 | 1 | 289 | 45 | 296 | 1.08e-111 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93690.t1 | AT4G26780 | 61.986 | 292 | 84 | 5 | 1 | 287 | 49 | 318 | 2.49e-100 | 297 |
| MS.gene93690.t1 | AT5G55200 | 55.762 | 269 | 75 | 4 | 19 | 287 | 69 | 293 | 1.43e-89 | 269 |
Find 56 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTGATGTATCAATTT+TGG | 0.095462 | 5.3:-75786402 | None:intergenic |
| AATTCATCAACTTCAAAATT+TGG | 0.123169 | 5.3:+75785799 | MS.gene93690:CDS |
| ACTTGATGTTGCGGATAATT+TGG | 0.165016 | 5.3:+75786346 | MS.gene93690:CDS |
| AGCACAGCTGCAACAGTGCC+TGG | 0.313047 | 5.3:-75787621 | None:intergenic |
| CTTGATGTTGCGGATAATTT+GGG | 0.353085 | 5.3:+75786347 | MS.gene93690:CDS |
| TGCTTCATGATCGTGTTATT+CGG | 0.355131 | 5.3:+75788203 | MS.gene93690:CDS |
| CATAAGAAATTGACTTGAAC+TGG | 0.356963 | 5.3:-75785766 | None:intergenic |
| GAAACTCCTGAAGACACTTC+TGG | 0.368193 | 5.3:+75786439 | MS.gene93690:CDS |
| GAAGTTGATGAATTTATAGA+TGG | 0.383842 | 5.3:-75785790 | None:intergenic |
| TTCAAGGAAATTCGCTATAC+AGG | 0.393442 | 5.3:+75786233 | MS.gene93690:CDS |
| GGATCAAAGGGTTCATTTGT+AGG | 0.395749 | 5.3:-75787552 | None:intergenic |
| CACCTTCCAGAAGTGTCTTC+AGG | 0.396210 | 5.3:-75786445 | None:intergenic |
| TCTCCGTACTTACGCTGAAA+TGG | 0.407067 | 5.3:+75786173 | MS.gene93690:CDS |
| TCTTCAGACTTGGCTTGTCC+AGG | 0.407793 | 5.3:-75785940 | None:intergenic |
| GAAGATCAAACAGAAGAATC+AGG | 0.432003 | 5.3:+75785958 | MS.gene93690:CDS |
| GACGTGAAGCAGAGAATTCA+AGG | 0.434720 | 5.3:+75786217 | MS.gene93690:CDS |
| TTCTGTTTGATCTTCAGACT+TGG | 0.446854 | 5.3:-75785950 | None:intergenic |
| ACAGTGAATCGGATCTATCC+AGG | 0.450640 | 5.3:+75786067 | MS.gene93690:CDS |
| GAAGGGAATAATGTGCATAA+TGG | 0.461273 | 5.3:+75785859 | MS.gene93690:CDS |
| CACATTCTCAAACTGTCAAA+AGG | 0.467135 | 5.3:+75785998 | MS.gene93690:CDS |
| GCACAGCTGCAACAGTGCCT+GGG | 0.468538 | 5.3:-75787620 | None:intergenic |
| AAAAGAGATTGAGAAAATGC+AGG | 0.485423 | 5.3:+75786143 | MS.gene93690:CDS |
| ATAACAATCCAGCTGAATGA+TGG | 0.497132 | 5.3:+75788260 | MS.gene93690:CDS |
| GTTATTCGGCCAGCGGAAGT+TGG | 0.504351 | 5.3:+75788217 | MS.gene93690:CDS |
| CACAGCTGCAACAGTGCCTG+GGG | 0.509586 | 5.3:-75787619 | None:intergenic |
| TCTCCATTTCAGCGTAAGTA+CGG | 0.510972 | 5.3:-75786176 | None:intergenic |
| GATCAAAGGGTTCATTTGTA+GGG | 0.515825 | 5.3:-75787551 | None:intergenic |
| GTTGAAACAGAAGGGAAAGA+AGG | 0.519141 | 5.3:+75785841 | MS.gene93690:CDS |
| GATTAAGCTTGTAGCTGAGA+AGG | 0.524422 | 5.3:+75786098 | MS.gene93690:CDS |
| AAGCTTAATCAAATCATCCC+TGG | 0.527767 | 5.3:-75786085 | None:intergenic |
| TGGGTTACACCAACTTCCGC+TGG | 0.528802 | 5.3:-75788226 | None:intergenic |
| GTCATGCCTATGTGGATCAA+AGG | 0.531278 | 5.3:-75787565 | None:intergenic |
| TTGAAACAGAAGGGAAAGAA+GGG | 0.534188 | 5.3:+75785842 | MS.gene93690:CDS |
| GCAGAGGAAATTGATCAGCC+TGG | 0.537322 | 5.3:+75785922 | MS.gene93690:CDS |
| AAATGGAGAATGTCATGGAC+AGG | 0.541642 | 5.3:+75786190 | MS.gene93690:CDS |
| AAAGAGTTTACTTGATGTTG+CGG | 0.544338 | 5.3:+75786337 | MS.gene93690:CDS |
| TTCAGATTCAGACAGTGAAT+CGG | 0.546821 | 5.3:+75786056 | MS.gene93690:CDS |
| TCATGCCTATGTGGATCAAA+GGG | 0.547596 | 5.3:-75787564 | None:intergenic |
| TTTCCCTTCTGTTTCAACTG+AGG | 0.548286 | 5.3:-75785836 | None:intergenic |
| CGCTGAAATGGAGAATGTCA+TGG | 0.553186 | 5.3:+75786185 | MS.gene93690:CDS |
| ATCAAGTGACTCCGCTGAAG+CGG | 0.555608 | 5.3:+75786415 | MS.gene93690:CDS |
| CTCAAACTGTCAAAAGGAGG+AGG | 0.568785 | 5.3:+75786004 | MS.gene93690:CDS |
| AAACTGTCAAAAGGAGGAGG+AGG | 0.571090 | 5.3:+75786007 | MS.gene93690:CDS |
| CACTGTTGCAGCTGTGCTGA+AGG | 0.572042 | 5.3:+75787626 | MS.gene93690:CDS |
| TCAGCCTCAGTTGAAACAGA+AGG | 0.575095 | 5.3:+75785832 | MS.gene93690:CDS |
| CAGGAGTTTCACCGCTTCAG+CGG | 0.583821 | 5.3:-75786426 | None:intergenic |
| GCAGTCTTCGAAGTTCCTGA+TGG | 0.602698 | 5.3:+75787588 | MS.gene93690:CDS |
| CAGCCTCAGTTGAAACAGAA+GGG | 0.605878 | 5.3:+75785833 | MS.gene93690:CDS |
| GACTGAGAAACAACTTTCAG+AGG | 0.609291 | 5.3:+75786475 | MS.gene93690:CDS |
| AAGACTGCGTCATGCCTATG+TGG | 0.609345 | 5.3:-75787573 | None:intergenic |
| TGATCGTGTTATTCGGCCAG+CGG | 0.642674 | 5.3:+75788210 | MS.gene93690:CDS |
| CTCCTGAAGACACTTCTGGA+AGG | 0.644196 | 5.3:+75786443 | MS.gene93690:CDS |
| CAGTGAATCGGATCTATCCA+GGG | 0.646702 | 5.3:+75786068 | MS.gene93690:CDS |
| ATTCTCAAACTGTCAAAAGG+AGG | 0.665800 | 5.3:+75786001 | MS.gene93690:CDS |
| ATGAACCCTTTGATCCACAT+AGG | 0.670564 | 5.3:+75787559 | MS.gene93690:CDS |
| ACAGCTGCAACAGTGCCTGG+GGG | 0.671502 | 5.3:-75787618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATGAGTAAGTTATT+TGG | - | chr5.3:75786281-75786300 | None:intergenic | 15.0% |
| !! | AATTTATGAGTAAGTTATTT+GGG | - | chr5.3:75786280-75786299 | None:intergenic | 15.0% |
| !!! | AGTTATTGTTTTACTATTTA+TGG | + | chr5.3:75787042-75787061 | MS.gene93690:intron | 15.0% |
| !!! | ATTGAAACAAGTTTTAAAAT+TGG | - | chr5.3:75787695-75787714 | None:intergenic | 15.0% |
| !!! | GTTATTGTTTTACTATTTAT+GGG | + | chr5.3:75787043-75787062 | MS.gene93690:intron | 15.0% |
| !!! | TGTAAGTTTTAAAATGAAAT+TGG | - | chr5.3:75786782-75786801 | None:intergenic | 15.0% |
| !! | AATTCATCAACTTCAAAATT+TGG | + | chr5.3:75785799-75785818 | MS.gene93690:CDS | 20.0% |
| !! | ATAAAGACTATATGATAGAA+TGG | - | chr5.3:75786537-75786556 | None:intergenic | 20.0% |
| !! | TTGTACTAGTTGTATATAAT+TGG | - | chr5.3:75786911-75786930 | None:intergenic | 20.0% |
| !! | TTGTATATAATTGGTATTAG+CGG | - | chr5.3:75786902-75786921 | None:intergenic | 20.0% |
| !!! | AAACAAGTTTTAAAATTGGA+AGG | - | chr5.3:75787691-75787710 | None:intergenic | 20.0% |
| !!! | ATTGTTATTTTCTTTTGCTT+GGG | - | chr5.3:75788248-75788267 | None:intergenic | 20.0% |
| !!! | GAAATTTTGAGTAATGTTTA+AGG | - | chr5.3:75786945-75786964 | None:intergenic | 20.0% |
| !!! | GATGATATATTTTGAAATAC+AGG | - | chr5.3:75787415-75787434 | None:intergenic | 20.0% |
| !!! | TTTTATAGACAACAATAAGT+GGG | - | chr5.3:75788086-75788105 | None:intergenic | 20.0% |
| ! | AAGGTAATGCTTATATTTAC+AGG | + | chr5.3:75787497-75787516 | MS.gene93690:intron | 25.0% |
| ! | TTACAGGTACTTAAAAAGTT+TGG | + | chr5.3:75787513-75787532 | MS.gene93690:intron | 25.0% |
| !! | ATATTGCAAGACTGATTTAA+AGG | - | chr5.3:75787897-75787916 | None:intergenic | 25.0% |
| !! | CTTTTATAGACAACAATAAG+TGG | - | chr5.3:75788087-75788106 | None:intergenic | 25.0% |
| !! | TATTGCAAGACTGATTTAAA+GGG | - | chr5.3:75787896-75787915 | None:intergenic | 25.0% |
| !! | TTCTCATTTATGCTTTTGTT+TGG | + | chr5.3:75786618-75786637 | MS.gene93690:intron | 25.0% |
| !!! | AGTGCAGTTTAATTTGTTAA+TGG | + | chr5.3:75787980-75787999 | MS.gene93690:intron | 25.0% |
| !!! | CAGTTTTTCAAAACATCAAT+AGG | - | chr5.3:75787213-75787232 | None:intergenic | 25.0% |
| !!! | CTATTGATGTTTTGAAAAAC+TGG | + | chr5.3:75787211-75787230 | MS.gene93690:intron | 25.0% |
| !!! | GAAGTTGATGAATTTATAGA+TGG | - | chr5.3:75785793-75785812 | None:intergenic | 25.0% |
| !!! | GATTGTTATTTTCTTTTGCT+TGG | - | chr5.3:75788249-75788268 | None:intergenic | 25.0% |
| !!! | GCTTACATTTGAATTTTGAT+TGG | + | chr5.3:75787284-75787303 | MS.gene93690:intron | 25.0% |
| !!! | TGAATTTTGATTGGTTAGAT+GGG | + | chr5.3:75787293-75787312 | MS.gene93690:intron | 25.0% |
| !!! | TTGAATTTTGATTGGTTAGA+TGG | + | chr5.3:75787292-75787311 | MS.gene93690:intron | 25.0% |
| AAAAACAAATGAAGAAGCAG+AGG | + | chr5.3:75785906-75785925 | MS.gene93690:CDS | 30.0% | |
| AAAAGAGATTGAGAAAATGC+AGG | + | chr5.3:75786143-75786162 | MS.gene93690:CDS | 30.0% | |
| AAAGAGTTTACTTGATGTTG+CGG | + | chr5.3:75786337-75786356 | MS.gene93690:CDS | 30.0% | |
| AAGATTCATTGTGTGATTGT+GGG | + | chr5.3:75786657-75786676 | MS.gene93690:intron | 30.0% | |
| ATGAACATTCCAAAACTTAC+GGG | + | chr5.3:75787752-75787771 | MS.gene93690:intron | 30.0% | |
| CATGAACATTCCAAAACTTA+CGG | + | chr5.3:75787751-75787770 | MS.gene93690:intron | 30.0% | |
| CGTCACATTGCAAATTAAAA+GGG | - | chr5.3:75788013-75788032 | None:intergenic | 30.0% | |
| CTAACTCATTTCATTTGAAG+AGG | - | chr5.3:75787962-75787981 | None:intergenic | 30.0% | |
| GTAATTTAGATCATTGCTTG+TGG | + | chr5.3:75787648-75787667 | MS.gene93690:intron | 30.0% | |
| GTATAGCTACAATGAGAAAA+AGG | - | chr5.3:75787825-75787844 | None:intergenic | 30.0% | |
| GTGCTTAAAAATGAAACTCT+GGG | + | chr5.3:75787445-75787464 | MS.gene93690:intron | 30.0% | |
| GTTGTCTATAAAAGATCCTT+TGG | + | chr5.3:75788093-75788112 | MS.gene93690:intron | 30.0% | |
| TCGTCACATTGCAAATTAAA+AGG | - | chr5.3:75788014-75788033 | None:intergenic | 30.0% | |
| TGCTTAAAAATGAAACTCTG+GGG | + | chr5.3:75787446-75787465 | MS.gene93690:intron | 30.0% | |
| TGTGCTTAAAAATGAAACTC+TGG | + | chr5.3:75787444-75787463 | MS.gene93690:intron | 30.0% | |
| TTCTGTGTGAAATTTGTGTA+AGG | + | chr5.3:75787316-75787335 | MS.gene93690:intron | 30.0% | |
| ! | GTCACTTGATGTATCAATTT+TGG | - | chr5.3:75786405-75786424 | None:intergenic | 30.0% |
| ! | GTTTTGCTTCATTGAATGTT+AGG | + | chr5.3:75788124-75788143 | MS.gene93690:intron | 30.0% |
| ! | TAGCTATACTTTTATCGCTT+AGG | + | chr5.3:75787836-75787855 | MS.gene93690:intron | 30.0% |
| ! | TTTTACTCGTTATGCAGTTA+AGG | + | chr5.3:75786556-75786575 | MS.gene93690:intron | 30.0% |
| !! | CATAAGAAATTGACTTGAAC+TGG | - | chr5.3:75785769-75785788 | None:intergenic | 30.0% |
| !!! | CTTCTTCATTTGTTTTTGCA+GGG | - | chr5.3:75785903-75785922 | None:intergenic | 30.0% |
| AAAAGATCCTTTGGATCAGA+AGG | + | chr5.3:75788102-75788121 | MS.gene93690:intron | 35.0% | |
| AAGCTTAATCAAATCATCCC+TGG | - | chr5.3:75786088-75786107 | None:intergenic | 35.0% | |
| AAGTATGATATCCTTTGCAG+TGG | - | chr5.3:75787935-75787954 | None:intergenic | 35.0% | |
| AATGAATCTTCGATCCCTTT+CGG | - | chr5.3:75786647-75786666 | None:intergenic | 35.0% | |
| ACTTGATGTTGCGGATAATT+TGG | + | chr5.3:75786346-75786365 | MS.gene93690:CDS | 35.0% | |
| AGAGATCTCTGTTGTTAATG+TGG | + | chr5.3:75786810-75786829 | MS.gene93690:intron | 35.0% | |
| AGATTCATTGTGTGATTGTG+GGG | + | chr5.3:75786658-75786677 | MS.gene93690:intron | 35.0% | |
| ATTCTCAAACTGTCAAAAGG+AGG | + | chr5.3:75786001-75786020 | MS.gene93690:CDS | 35.0% | |
| CACATTCTCAAACTGTCAAA+AGG | + | chr5.3:75785998-75786017 | MS.gene93690:CDS | 35.0% | |
| CTGTTGTTAATGTGGAAATG+CGG | + | chr5.3:75786818-75786837 | MS.gene93690:intron | 35.0% | |
| CTTGATGTTGCGGATAATTT+GGG | + | chr5.3:75786347-75786366 | MS.gene93690:CDS | 35.0% | |
| GAAGATCAAACAGAAGAATC+AGG | + | chr5.3:75785958-75785977 | MS.gene93690:CDS | 35.0% | |
| GAAGATTCATTGTGTGATTG+TGG | + | chr5.3:75786656-75786675 | MS.gene93690:intron | 35.0% | |
| GAAGGGAATAATGTGCATAA+TGG | + | chr5.3:75785859-75785878 | MS.gene93690:CDS | 35.0% | |
| GATCAAAGGGTTCATTTGTA+GGG | - | chr5.3:75787554-75787573 | None:intergenic | 35.0% | |
| TATTGTTGATATGACAGCAC+AGG | - | chr5.3:75787355-75787374 | None:intergenic | 35.0% | |
| TGGATGATGAATTTGTACCT+AGG | - | chr5.3:75787867-75787886 | None:intergenic | 35.0% | |
| TTATCGCTTAGGAAATTCCT+AGG | + | chr5.3:75787847-75787866 | MS.gene93690:intron | 35.0% | |
| TTCAAGGAAATTCGCTATAC+AGG | + | chr5.3:75786233-75786252 | MS.gene93690:CDS | 35.0% | |
| TTCAGATTCAGACAGTGAAT+CGG | + | chr5.3:75786056-75786075 | MS.gene93690:CDS | 35.0% | |
| TTCTGTTTGATCTTCAGACT+TGG | - | chr5.3:75785953-75785972 | None:intergenic | 35.0% | |
| TTGAAACAGAAGGGAAAGAA+GGG | + | chr5.3:75785842-75785861 | MS.gene93690:CDS | 35.0% | |
| TTTAGATCATTGCTTGTGGA+AGG | + | chr5.3:75787652-75787671 | MS.gene93690:intron | 35.0% | |
| ! | TGCTTCATGATCGTGTTATT+CGG | + | chr5.3:75788203-75788222 | MS.gene93690:CDS | 35.0% |
| !! | TTTGTTGTTCTGAATTGCAG+TGG | + | chr5.3:75787238-75787257 | MS.gene93690:intron | 35.0% |
| !!! | ATCCTTTGCAGTGGTTTTTT+AGG | - | chr5.3:75787926-75787945 | None:intergenic | 35.0% |
| !!! | GCTTCTTCATTTGTTTTTGC+AGG | - | chr5.3:75785904-75785923 | None:intergenic | 35.0% |
| !!! | TCCTTTGCAGTGGTTTTTTA+GGG | - | chr5.3:75787925-75787944 | None:intergenic | 35.0% |
| !!! | TGATTTTGAAGCTCAGTTCA+TGG | + | chr5.3:75786706-75786725 | MS.gene93690:intron | 35.0% |
| AAAAATCAGGACCACTGCAT+CGG | - | chr5.3:75787102-75787121 | None:intergenic | 40.0% | |
| AAATGGAGAATGTCATGGAC+AGG | + | chr5.3:75786190-75786209 | MS.gene93690:CDS | 40.0% | |
| ACCCTAAAAAACCACTGCAA+AGG | + | chr5.3:75787921-75787940 | MS.gene93690:intron | 40.0% | |
| AGCAAAACCTTCTGATCCAA+AGG | - | chr5.3:75788112-75788131 | None:intergenic | 40.0% | |
| ATGAACCCTTTGATCCACAT+AGG | + | chr5.3:75787559-75787578 | MS.gene93690:CDS | 40.0% | |
| ATTGTGTGATTGTGGGGATA+AGG | + | chr5.3:75786664-75786683 | MS.gene93690:intron | 40.0% | |
| GACTGAGAAACAACTTTCAG+AGG | + | chr5.3:75786475-75786494 | MS.gene93690:CDS | 40.0% | |
| GATTAAGCTTGTAGCTGAGA+AGG | + | chr5.3:75786098-75786117 | MS.gene93690:CDS | 40.0% | |
| GGATCAAAGGGTTCATTTGT+AGG | - | chr5.3:75787555-75787574 | None:intergenic | 40.0% | |
| GTTGAAACAGAAGGGAAAGA+AGG | + | chr5.3:75785841-75785860 | MS.gene93690:CDS | 40.0% | |
| TATCCAACTGTTATGTGTGC+AGG | + | chr5.3:75788171-75788190 | MS.gene93690:intron | 40.0% | |
| TCATGCCTATGTGGATCAAA+GGG | - | chr5.3:75787567-75787586 | None:intergenic | 40.0% | |
| TCCAACTCTGTTGTCAAAAG+CGG | - | chr5.3:75787156-75787175 | None:intergenic | 40.0% | |
| TCTCCATTTCAGCGTAAGTA+CGG | - | chr5.3:75786179-75786198 | None:intergenic | 40.0% | |
| TGCTTCAGGCTATTGTTTGA+AGG | + | chr5.3:75787478-75787497 | MS.gene93690:intron | 40.0% | |
| TGGGGACAATATATTGCTTC+AGG | + | chr5.3:75787464-75787483 | MS.gene93690:intron | 40.0% | |
| TTGTGTGATTGTGGGGATAA+GGG | + | chr5.3:75786665-75786684 | MS.gene93690:intron | 40.0% | |
| TTTCCCTTCTGTTTCAACTG+AGG | - | chr5.3:75785839-75785858 | None:intergenic | 40.0% | |
| ! | ACTGATTTAAAGGGAGGTGA+TGG | - | chr5.3:75787887-75787906 | None:intergenic | 40.0% |
| ! | TGCAAGACTGATTTAAAGGG+AGG | - | chr5.3:75787893-75787912 | None:intergenic | 40.0% |
| ! | TGTTCTGAATTGCAGTGGAA+AGG | + | chr5.3:75787243-75787262 | MS.gene93690:intron | 40.0% |
| ! | TTTGAAGCTCAGTTCATGGT+TGG | + | chr5.3:75786710-75786729 | MS.gene93690:intron | 40.0% |
| !! | CTTTTGTTTGGTCACCGAAA+GGG | + | chr5.3:75786630-75786649 | MS.gene93690:intron | 40.0% |
| AAACTGTCAAAAGGAGGAGG+AGG | + | chr5.3:75786007-75786026 | MS.gene93690:CDS | 45.0% | |
| AAGCTCAGTTCATGGTTGGT+TGG | + | chr5.3:75786714-75786733 | MS.gene93690:intron | 45.0% | |
| ACAGTGAATCGGATCTATCC+AGG | + | chr5.3:75786067-75786086 | MS.gene93690:CDS | 45.0% | |
| ATTGTGGGGATAAGGGTTGT+CGG | + | chr5.3:75786672-75786691 | MS.gene93690:intron | 45.0% | |
| CAACTGTTATGTGTGCAGGT+AGG | + | chr5.3:75788175-75788194 | MS.gene93690:intron | 45.0% | |
| CAGCCTCAGTTGAAACAGAA+GGG | + | chr5.3:75785833-75785852 | MS.gene93690:CDS | 45.0% | |
| CAGTGAATCGGATCTATCCA+GGG | + | chr5.3:75786068-75786087 | MS.gene93690:CDS | 45.0% | |
| CGCTGAAATGGAGAATGTCA+TGG | + | chr5.3:75786185-75786204 | MS.gene93690:CDS | 45.0% | |
| CGTGTGTCATAAGTGGAAAG+CGG | - | chr5.3:75787079-75787098 | None:intergenic | 45.0% | |
| CTACCTGCACACATAACAGT+TGG | - | chr5.3:75788177-75788196 | None:intergenic | 45.0% | |
| CTCAAACTGTCAAAAGGAGG+AGG | + | chr5.3:75786004-75786023 | MS.gene93690:CDS | 45.0% | |
| GAAACTCCTGAAGACACTTC+TGG | + | chr5.3:75786439-75786458 | MS.gene93690:CDS | 45.0% | |
| GACGTGAAGCAGAGAATTCA+AGG | + | chr5.3:75786217-75786236 | MS.gene93690:CDS | 45.0% | |
| GTCATGCCTATGTGGATCAA+AGG | - | chr5.3:75787568-75787587 | None:intergenic | 45.0% | |
| TAAGTGGAAAGCGGTCAAAG+CGG | - | chr5.3:75787070-75787089 | None:intergenic | 45.0% | |
| TCAGCCTCAGTTGAAACAGA+AGG | + | chr5.3:75785832-75785851 | MS.gene93690:CDS | 45.0% | |
| TCTCCGTACTTACGCTGAAA+TGG | + | chr5.3:75786173-75786192 | MS.gene93690:CDS | 45.0% | |
| ! | AGCTCAGTTCATGGTTGGTT+GGG | + | chr5.3:75786715-75786734 | MS.gene93690:intron | 45.0% |
| ! | AGGAGCGTAGTGGAAAAATC+AGG | - | chr5.3:75787115-75787134 | None:intergenic | 45.0% |
| ! | TGACAGATGCCCGTAAGTTT+TGG | - | chr5.3:75787764-75787783 | None:intergenic | 45.0% |
| !! | GCTTTTGTTTGGTCACCGAA+AGG | + | chr5.3:75786629-75786648 | MS.gene93690:intron | 45.0% |
| !! | ATTTATAATATGAAATAAAA+GGG | + | chr5.3:75786972-75786991 | MS.gene93690:intron | 5.0% |
| !! | TATTTATAATATGAAATAAA+AGG | + | chr5.3:75786971-75786990 | MS.gene93690:intron | 5.0% |
| AAGACTGCGTCATGCCTATG+TGG | - | chr5.3:75787576-75787595 | None:intergenic | 50.0% | |
| ATCAAGTGACTCCGCTGAAG+CGG | + | chr5.3:75786415-75786434 | MS.gene93690:CDS | 50.0% | |
| CTCCTGAAGACACTTCTGGA+AGG | + | chr5.3:75786443-75786462 | MS.gene93690:CDS | 50.0% | |
| GACAGCACAGGAAGATGTGA+AGG | - | chr5.3:75787343-75787362 | None:intergenic | 50.0% | |
| GCAGAGGAAATTGATCAGCC+TGG | + | chr5.3:75785922-75785941 | MS.gene93690:CDS | 50.0% | |
| GCAGTCTTCGAAGTTCCTGA+TGG | + | chr5.3:75787588-75787607 | MS.gene93690:CDS | 50.0% | |
| GGCCAACCCAAAAATTGGCA+CGG | + | chr5.3:75786844-75786863 | MS.gene93690:intron | 50.0% | |
| GTTAATGTGGAAATGCGGCG+CGG | + | chr5.3:75786823-75786842 | MS.gene93690:intron | 50.0% | |
| TCCACTACGCTCCTCTATAG+CGG | + | chr5.3:75787121-75787140 | MS.gene93690:intron | 50.0% | |
| TTGTGGGGATAAGGGTTGTC+GGG | + | chr5.3:75786673-75786692 | MS.gene93690:intron | 50.0% | |
| ! | CATGGTTGGTTGGGTGCTAT+GGG | + | chr5.3:75786724-75786743 | MS.gene93690:intron | 50.0% |
| ! | GGTTGGGTGCTATGGGATTA+GGG | + | chr5.3:75786731-75786750 | MS.gene93690:intron | 50.0% |
| ! | GTTGGGTGCTATGGGATTAG+GGG | + | chr5.3:75786732-75786751 | MS.gene93690:intron | 50.0% |
| ! | TCATGGTTGGTTGGGTGCTA+TGG | + | chr5.3:75786723-75786742 | MS.gene93690:intron | 50.0% |
| ! | TGATCGTGTTATTCGGCCAG+CGG | + | chr5.3:75788210-75788229 | MS.gene93690:CDS | 50.0% |
| ! | TGGTTGGGTGCTATGGGATT+AGG | + | chr5.3:75786730-75786749 | MS.gene93690:intron | 50.0% |
| ! | TTTTGCAGGGTCAGCACTTG+TGG | - | chr5.3:75785890-75785909 | None:intergenic | 50.0% |
| !! | CACCTTCCAGAAGTGTCTTC+AGG | - | chr5.3:75786448-75786467 | None:intergenic | 50.0% |
| !! | GTGGGAAGCATCAGCATGAT+TGG | - | chr5.3:75788068-75788087 | None:intergenic | 50.0% |
| !! | TCTTCAGACTTGGCTTGTCC+AGG | - | chr5.3:75785943-75785962 | None:intergenic | 50.0% |
| !!! | GCCGCTTTTGACAACAGAGT+TGG | + | chr5.3:75787152-75787171 | MS.gene93690:intron | 50.0% |
| ACCCAAAAATTGGCACGGCG+CGG | + | chr5.3:75786849-75786868 | MS.gene93690:intron | 55.0% | |
| CACTGTTGCAGCTGTGCTGA+AGG | + | chr5.3:75787626-75787645 | MS.gene93690:CDS | 55.0% | |
| CAGGAGTTTCACCGCTTCAG+CGG | - | chr5.3:75786429-75786448 | None:intergenic | 55.0% | |
| GTTATTCGGCCAGCGGAAGT+TGG | + | chr5.3:75788217-75788236 | MS.gene93690:CDS | 55.0% | |
| TATGACACACGCCGATGCAG+TGG | + | chr5.3:75787088-75787107 | MS.gene93690:intron | 55.0% | |
| TGGGTTACACCAACTTCCGC+TGG | - | chr5.3:75788229-75788248 | None:intergenic | 55.0% | |
| ! | GCATCGGCGTGTGTCATAAG+TGG | - | chr5.3:75787086-75787105 | None:intergenic | 55.0% |
| ! | TCCGCGCCGTGCCAATTTTT+GGG | - | chr5.3:75786853-75786872 | None:intergenic | 55.0% |
| ! | TTCCGCGCCGTGCCAATTTT+TGG | - | chr5.3:75786854-75786873 | None:intergenic | 55.0% |
| !!! | CGCCGTGCCAATTTTTGGGT+TGG | - | chr5.3:75786849-75786868 | None:intergenic | 55.0% |
| AAATTGGCACGGCGCGGAAG+CGG | + | chr5.3:75786855-75786874 | MS.gene93690:intron | 60.0% | |
| ACAGCTGCAACAGTGCCTGG+GGG | - | chr5.3:75787621-75787640 | None:intergenic | 60.0% | |
| AGCACAGCTGCAACAGTGCC+TGG | - | chr5.3:75787624-75787643 | None:intergenic | 60.0% | |
| CACAGCTGCAACAGTGCCTG+GGG | - | chr5.3:75787622-75787641 | None:intergenic | 60.0% | |
| CTACGCTCCTCTATAGCGGC+CGG | + | chr5.3:75787125-75787144 | MS.gene93690:intron | 60.0% | |
| GCACAGCTGCAACAGTGCCT+GGG | - | chr5.3:75787623-75787642 | None:intergenic | 60.0% | |
| GGCGCGGCCAACCCAAAAAT+TGG | + | chr5.3:75786839-75786858 | MS.gene93690:intron | 60.0% | |
| ! | GCCGCTATAGAGGAGCGTAG+TGG | - | chr5.3:75787125-75787144 | None:intergenic | 60.0% |
| AATTGGCACGGCGCGGAAGC+GGG | + | chr5.3:75786856-75786875 | MS.gene93690:intron | 65.0% | |
| CCTGATGGTTCCAAGCCCCC+AGG | + | chr5.3:75787603-75787622 | MS.gene93690:CDS | 65.0% | |
| CCTGGGGGCTTGGAACCATC+AGG | - | chr5.3:75787606-75787625 | None:intergenic | 65.0% | |
| GTTGTCAAAAGCGGCCGCGC+CGG | - | chr5.3:75787147-75787166 | None:intergenic | 65.0% | |
| TGCAACAGTGCCTGGGGGCT+TGG | - | chr5.3:75787616-75787635 | None:intergenic | 65.0% | |
| ! | GAAGCGGGGCGCTATTTCGG+TGG | + | chr5.3:75786871-75786890 | MS.gene93690:intron | 65.0% |
| ! | GCGGAAGCGGGGCGCTATTT+CGG | + | chr5.3:75786868-75786887 | MS.gene93690:intron | 65.0% |
| ! | GGGGCGCTATTTCGGTGGTG+TGG | + | chr5.3:75786876-75786895 | MS.gene93690:intron | 65.0% |
| ATTGGCACGGCGCGGAAGCG+GGG | + | chr5.3:75786857-75786876 | MS.gene93690:intron | 70.0% | |
| CTCCTCTATAGCGGCCGGCG+CGG | + | chr5.3:75787130-75787149 | MS.gene93690:intron | 70.0% | |
| !! | GGCCGCGCCGGCCGCTATAG+AGG | - | chr5.3:75787135-75787154 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 75785760 | 75788279 | 75785760 | ID=MS.gene93690 |
| chr5.3 | mRNA | 75785760 | 75788279 | 75785760 | ID=MS.gene93690.t1;Parent=MS.gene93690 |
| chr5.3 | exon | 75785760 | 75786254 | 75785760 | ID=MS.gene93690.t1.exon1;Parent=MS.gene93690.t1 |
| chr5.3 | CDS | 75785760 | 75786254 | 75785760 | ID=cds.MS.gene93690.t1;Parent=MS.gene93690.t1 |
| chr5.3 | exon | 75786329 | 75786496 | 75786329 | ID=MS.gene93690.t1.exon2;Parent=MS.gene93690.t1 |
| chr5.3 | CDS | 75786329 | 75786496 | 75786329 | ID=cds.MS.gene93690.t1;Parent=MS.gene93690.t1 |
| chr5.3 | exon | 75787519 | 75787647 | 75787519 | ID=MS.gene93690.t1.exon3;Parent=MS.gene93690.t1 |
| chr5.3 | CDS | 75787519 | 75787647 | 75787519 | ID=cds.MS.gene93690.t1;Parent=MS.gene93690.t1 |
| chr5.3 | exon | 75788193 | 75788279 | 75788193 | ID=MS.gene93690.t1.exon4;Parent=MS.gene93690.t1 |
| chr5.3 | CDS | 75788193 | 75788279 | 75788193 | ID=cds.MS.gene93690.t1;Parent=MS.gene93690.t1 |
| Gene Sequence |
| Protein sequence |
