Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93832.t1 | RHN54831.1 | 92.5 | 187 | 14 | 0 | 1 | 187 | 103 | 289 | 8.80E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93832.t1 | A0A396HQQ4 | 92.5 | 187 | 14 | 0 | 1 | 187 | 103 | 289 | 6.3e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene93832 | 0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene050430 | MS.gene93832 | 0.812869 | 3.41E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene93832 | 0.81394 | 1.98E-51 | -1.69E-46 |
| MS.gene054174 | MS.gene93832 | 0.811972 | 5.36E-51 | -1.69E-46 |
| MS.gene054175 | MS.gene93832 | 0.801332 | 9.47E-49 | -1.69E-46 |
| MS.gene054484 | MS.gene93832 | 0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene93832 | 0.821336 | 4.26E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93832.t1 | MTR_7g024060 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_6g087820 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_5g081190 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_5g091480 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_5g056290 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_3g031190 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_2g005490 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_2g010570 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 9.43e-124 | 355 |
| MS.gene93832.t1 | MTR_5g030110 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 1.14e-123 | 355 |
| MS.gene93832.t1 | MTR_2g007410 | 93.478 | 184 | 12 | 0 | 1 | 184 | 102 | 285 | 1.14e-123 | 355 |
| MS.gene93832.t1 | MTR_8g446640 | 79.556 | 225 | 31 | 1 | 1 | 225 | 83 | 292 | 1.22e-123 | 354 |
| MS.gene93832.t1 | MTR_2g010270 | 89.119 | 193 | 12 | 1 | 1 | 184 | 83 | 275 | 5.20e-122 | 350 |
| MS.gene93832.t1 | MTR_7g074180 | 91.848 | 184 | 15 | 0 | 1 | 184 | 102 | 285 | 1.35e-121 | 349 |
| MS.gene93832.t1 | MTR_7g451880 | 91.848 | 184 | 15 | 0 | 1 | 184 | 103 | 286 | 2.26e-121 | 349 |
| MS.gene93832.t1 | MTR_4g058660 | 91.304 | 184 | 16 | 0 | 1 | 184 | 102 | 285 | 3.66e-120 | 346 |
| MS.gene93832.t1 | MTR_1g011490 | 75.330 | 227 | 32 | 2 | 1 | 227 | 102 | 304 | 1.33e-112 | 326 |
| MS.gene93832.t1 | MTR_1g023370 | 83.696 | 184 | 11 | 1 | 1 | 184 | 102 | 266 | 3.00e-106 | 310 |
| MS.gene93832.t1 | MTR_5g045850 | 82.609 | 184 | 14 | 2 | 1 | 184 | 87 | 252 | 1.09e-101 | 298 |
| MS.gene93832.t1 | MTR_3g015660 | 92.857 | 140 | 10 | 0 | 1 | 140 | 102 | 241 | 1.91e-93 | 275 |
| MS.gene93832.t1 | MTR_5g012180 | 81.928 | 166 | 13 | 2 | 19 | 184 | 75 | 223 | 6.94e-91 | 269 |
| MS.gene93832.t1 | MTR_8g005940 | 75.543 | 184 | 12 | 1 | 1 | 184 | 102 | 252 | 2.65e-90 | 269 |
| MS.gene93832.t1 | MTR_0105s0080 | 92.647 | 136 | 10 | 0 | 1 | 136 | 58 | 193 | 1.55e-89 | 265 |
| MS.gene93832.t1 | MTR_3g036220 | 73.494 | 166 | 13 | 1 | 19 | 184 | 75 | 209 | 2.41e-78 | 237 |
| MS.gene93832.t1 | MTR_1g082860 | 87.121 | 132 | 8 | 1 | 1 | 132 | 102 | 224 | 3.91e-78 | 237 |
| MS.gene93832.t1 | MTR_1g105785 | 42.336 | 274 | 132 | 1 | 1 | 248 | 102 | 375 | 2.12e-77 | 244 |
| MS.gene93832.t1 | MTR_7g110100 | 40.217 | 276 | 139 | 1 | 1 | 250 | 102 | 377 | 3.35e-69 | 222 |
| MS.gene93832.t1 | MTR_2g019040 | 70.149 | 134 | 32 | 1 | 51 | 184 | 4 | 129 | 1.54e-60 | 191 |
| MS.gene93832.t1 | MTR_5g071020 | 62.651 | 166 | 10 | 2 | 19 | 184 | 75 | 188 | 7.60e-60 | 189 |
| MS.gene93832.t1 | MTR_0048s0080 | 43.777 | 233 | 97 | 2 | 38 | 246 | 5 | 227 | 3.20e-58 | 188 |
| MS.gene93832.t1 | MTR_3g449160 | 90.217 | 92 | 9 | 0 | 19 | 110 | 22 | 113 | 4.38e-57 | 178 |
| MS.gene93832.t1 | MTR_2g435900 | 90.217 | 92 | 9 | 0 | 19 | 110 | 22 | 113 | 5.25e-56 | 175 |
| MS.gene93832.t1 | MTR_1g052715 | 43.478 | 184 | 104 | 0 | 4 | 187 | 65 | 248 | 1.79e-51 | 171 |
| MS.gene93832.t1 | MTR_3g452170 | 36.134 | 238 | 126 | 1 | 1 | 212 | 102 | 339 | 1.31e-49 | 169 |
| MS.gene93832.t1 | MTR_7g051400 | 34.686 | 271 | 129 | 4 | 4 | 248 | 105 | 353 | 4.72e-48 | 167 |
| MS.gene93832.t1 | MTR_5g019960 | 53.957 | 139 | 62 | 2 | 1 | 138 | 108 | 245 | 1.32e-46 | 155 |
| MS.gene93832.t1 | MTR_7g045450 | 45.349 | 172 | 79 | 1 | 1 | 172 | 102 | 258 | 4.92e-44 | 149 |
| MS.gene93832.t1 | MTR_6g073570 | 45.349 | 172 | 79 | 1 | 1 | 172 | 102 | 258 | 4.92e-44 | 149 |
| MS.gene93832.t1 | MTR_6g024030 | 56.311 | 103 | 45 | 0 | 39 | 141 | 60 | 162 | 6.59e-37 | 130 |
| MS.gene93832.t1 | MTR_3g007260 | 58.947 | 95 | 38 | 1 | 19 | 113 | 80 | 173 | 1.92e-34 | 122 |
| MS.gene93832.t1 | MTR_1g492690 | 40.361 | 166 | 72 | 6 | 93 | 242 | 8 | 162 | 3.16e-29 | 113 |
| MS.gene93832.t1 | MTR_4g060433 | 46.087 | 115 | 36 | 1 | 156 | 244 | 1 | 115 | 7.67e-24 | 95.9 |
| MS.gene93832.t1 | MTR_8g104590 | 67.692 | 65 | 18 | 1 | 183 | 247 | 43 | 104 | 1.01e-22 | 92.4 |
| MS.gene93832.t1 | MTR_2g450060 | 28.462 | 260 | 148 | 10 | 14 | 238 | 115 | 371 | 1.69e-22 | 96.7 |
| MS.gene93832.t1 | MTR_4g032585 | 42.478 | 113 | 39 | 1 | 164 | 250 | 9 | 121 | 1.86e-22 | 94.0 |
| MS.gene93832.t1 | MTR_1g110330 | 69.444 | 72 | 3 | 1 | 113 | 184 | 117 | 169 | 2.19e-22 | 92.0 |
| MS.gene93832.t1 | MTR_1g110330 | 87.805 | 41 | 5 | 0 | 1 | 41 | 80 | 120 | 2.80e-18 | 80.9 |
| MS.gene93832.t1 | MTR_4g032565 | 41.593 | 113 | 40 | 1 | 164 | 250 | 9 | 121 | 5.68e-22 | 92.4 |
| MS.gene93832.t1 | MTR_4g014890 | 26.619 | 278 | 165 | 7 | 9 | 251 | 135 | 408 | 6.27e-22 | 94.7 |
| MS.gene93832.t1 | MTR_3g055660 | 25.271 | 277 | 170 | 6 | 9 | 251 | 135 | 408 | 4.00e-21 | 92.4 |
| MS.gene93832.t1 | MTR_6g059860 | 25.185 | 270 | 165 | 6 | 9 | 244 | 129 | 395 | 9.03e-21 | 91.3 |
| MS.gene93832.t1 | MTR_8g062030 | 27.132 | 258 | 155 | 7 | 7 | 233 | 105 | 360 | 1.72e-18 | 84.7 |
| MS.gene93832.t1 | MTR_3g068135 | 48.913 | 92 | 30 | 1 | 142 | 216 | 39 | 130 | 1.25e-17 | 79.0 |
| MS.gene93832.t1 | MTR_3g068135 | 84.848 | 33 | 5 | 0 | 38 | 70 | 6 | 38 | 9.00e-11 | 60.1 |
| MS.gene93832.t1 | MTR_7g096440 | 32.407 | 108 | 73 | 0 | 7 | 114 | 61 | 168 | 1.43e-17 | 80.1 |
| MS.gene93832.t1 | MTR_5g057125 | 37.838 | 148 | 80 | 4 | 103 | 238 | 1 | 148 | 2.71e-17 | 79.7 |
| MS.gene93832.t1 | MTR_5g041170 | 26.966 | 267 | 153 | 9 | 17 | 244 | 17 | 280 | 1.35e-16 | 79.0 |
| MS.gene93832.t1 | MTR_7g450880 | 26.493 | 268 | 163 | 9 | 4 | 238 | 5 | 271 | 3.96e-16 | 76.6 |
| MS.gene93832.t1 | MTR_4g036240 | 25.194 | 258 | 156 | 8 | 19 | 245 | 40 | 291 | 6.94e-16 | 77.0 |
| MS.gene93832.t1 | MTR_3g056270 | 25.581 | 258 | 155 | 8 | 19 | 245 | 279 | 530 | 7.90e-16 | 77.0 |
| MS.gene93832.t1 | MTR_4g036240 | 25.194 | 258 | 156 | 8 | 19 | 245 | 120 | 371 | 7.97e-16 | 77.0 |
| MS.gene93832.t1 | MTR_6g055250 | 29.545 | 220 | 127 | 9 | 14 | 211 | 72 | 285 | 2.03e-15 | 75.5 |
| MS.gene93832.t1 | MTR_8g465040 | 52.239 | 67 | 32 | 0 | 4 | 70 | 105 | 171 | 9.71e-15 | 70.5 |
| MS.gene93832.t1 | MTR_1g043690 | 27.778 | 216 | 133 | 7 | 14 | 211 | 118 | 328 | 2.40e-14 | 72.8 |
| MS.gene93832.t1 | MTR_6g465570 | 47.887 | 71 | 37 | 0 | 1 | 71 | 98 | 168 | 2.56e-14 | 69.3 |
| MS.gene93832.t1 | MTR_4g085760 | 23.462 | 260 | 160 | 7 | 7 | 230 | 111 | 367 | 8.50e-14 | 70.9 |
| MS.gene93832.t1 | MTR_5g078250 | 23.305 | 236 | 151 | 6 | 38 | 246 | 140 | 372 | 9.44e-14 | 70.9 |
| MS.gene93832.t1 | MTR_7g039300 | 50.847 | 59 | 29 | 0 | 114 | 172 | 189 | 247 | 9.48e-13 | 66.2 |
| MS.gene93832.t1 | MTR_4g036240 | 24.891 | 229 | 136 | 7 | 47 | 245 | 6 | 228 | 2.24e-12 | 66.6 |
| MS.gene93832.t1 | MTR_5g053590 | 28.205 | 273 | 150 | 11 | 14 | 244 | 112 | 380 | 4.98e-12 | 65.9 |
| MS.gene93832.t1 | MTR_4g070090 | 26.966 | 267 | 148 | 10 | 14 | 244 | 139 | 394 | 2.06e-11 | 63.9 |
| MS.gene93832.t1 | MTR_5g027390 | 26.966 | 267 | 148 | 10 | 14 | 244 | 107 | 362 | 2.47e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93832.t1 | AT1G52950 | 24.382 | 283 | 175 | 7 | 10 | 254 | 108 | 389 | 2.29e-16 | 78.6 |
Find 53 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTGCATTGCTCTCTTT+GGG | 0.202399 | 1.2:-78304295 | MS.gene93832:CDS |
| ACCACTTGCATTGCTCTCTT+TGG | 0.221388 | 1.2:-78304296 | MS.gene93832:CDS |
| CGCCAGGTGACCCAGTTTAT+TGG | 0.230899 | 1.2:-78303132 | MS.gene93832:CDS |
| TGCAAGACATGCATGTATTT+AGG | 0.284835 | 1.2:-78304195 | MS.gene93832:intron |
| GCACATTATGCCCAATAAAC+TGG | 0.295678 | 1.2:+78303121 | None:intergenic |
| TAATTGAAAGAGGTGATATA+AGG | 0.328150 | 1.2:-78304479 | MS.gene93832:CDS |
| TACGTAATTTCAGATGTTAT+TGG | 0.335367 | 1.2:-78304507 | MS.gene93832:intron |
| GCCAGGTGACCCAGTTTATT+GGG | 0.344689 | 1.2:-78303131 | MS.gene93832:CDS |
| GGTTATTGATCTCACTTTAG+AGG | 0.347534 | 1.2:-78304427 | MS.gene93832:CDS |
| GTCATGTACGCAGCGACTTC+AGG | 0.351625 | 1.2:+78304023 | None:intergenic |
| GGGACTAAGCTGATACTTAA+TGG | 0.354334 | 1.2:-78304053 | MS.gene93832:CDS |
| TGAAATCTGGCTGACACTTC+GGG | 0.360423 | 1.2:+78303629 | None:intergenic |
| ATGCACCCAGTGTGCTTCAT+TGG | 0.403027 | 1.2:-78303358 | MS.gene93832:intron |
| CGGAGCTGTTCGTTGAAATC+TGG | 0.408812 | 1.2:+78303616 | None:intergenic |
| TTGAAATCTGGCTGACACTT+CGG | 0.410210 | 1.2:+78303628 | None:intergenic |
| TCATGCTTTCAATTGTCATT+CGG | 0.442768 | 1.2:+78303562 | None:intergenic |
| GGAGTTGCTAATGTGTTTAA+CGG | 0.446784 | 1.2:-78304074 | MS.gene93832:CDS |
| AACTGTCGAGGAAGTGTCTA+CGG | 0.454569 | 1.2:-78304636 | MS.gene93832:CDS |
| CACTTGCATTGCTCTCTTTG+GGG | 0.462664 | 1.2:-78304294 | MS.gene93832:CDS |
| GAGTTGCTAATGTGTTTAAC+GGG | 0.482920 | 1.2:-78304073 | MS.gene93832:CDS |
| AATTGAAAGAGGTGATATAA+GGG | 0.489125 | 1.2:-78304478 | MS.gene93832:CDS |
| GCCCAATAAACTGGGTCACC+TGG | 0.489951 | 1.2:+78303130 | None:intergenic |
| AAAAGGATGGAAGGAAAAGC+AGG | 0.493666 | 1.2:-78304449 | MS.gene93832:CDS |
| CACATTATGCCCAATAAACT+GGG | 0.494299 | 1.2:+78303122 | None:intergenic |
| GAAGTCGCTGCGTACATGAC+AGG | 0.494351 | 1.2:-78304020 | MS.gene93832:CDS |
| GCTTTCAATTGTCATTCGGT+TGG | 0.496345 | 1.2:+78303566 | None:intergenic |
| GATAGCAGGCGAGTGTACTT+TGG | 0.506539 | 1.2:+78304706 | None:intergenic |
| AACTGCAATATCAATATAGT+AGG | 0.513997 | 1.2:+78304219 | None:intergenic |
| TGATATAAGGGAAACTGAAA+AGG | 0.524272 | 1.2:-78304466 | MS.gene93832:CDS |
| ATAAGGGAAACTGAAAAGGA+TGG | 0.532230 | 1.2:-78304462 | MS.gene93832:CDS |
| ATTGGTCATGTAATTGAAAG+AGG | 0.535259 | 1.2:-78304489 | MS.gene93832:CDS |
| AAAACGTTCATAGGGATAGC+AGG | 0.542724 | 1.2:+78304692 | None:intergenic |
| GAAGAGAGAATTTCATTGAA+CGG | 0.548460 | 1.2:+78304659 | None:intergenic |
| CGCAAGTGTAAAACTTGCAA+GGG | 0.557114 | 1.2:-78303306 | MS.gene93832:CDS |
| TCATTGGCCACCGTTGACAA+TGG | 0.563947 | 1.2:-78303342 | MS.gene93832:CDS |
| TCGCAAGTGTAAAACTTGCA+AGG | 0.564821 | 1.2:-78303307 | MS.gene93832:CDS |
| ACTGTCGAGGAAGTGTCTAC+GGG | 0.577481 | 1.2:-78304635 | MS.gene93832:intron |
| GGGAAACTGAAAAGGATGGA+AGG | 0.581802 | 1.2:-78304458 | MS.gene93832:CDS |
| TAGTAGGTGTGTGGTTGTCA+TGG | 0.596523 | 1.2:+78304235 | None:intergenic |
| AATTCTCTCTTCAACTGTCG+AGG | 0.602150 | 1.2:-78304648 | MS.gene93832:CDS |
| AAGTCGCTGCGTACATGACA+GGG | 0.606137 | 1.2:-78304019 | MS.gene93832:intron |
| GTCATCGTGATGGACGACAC+AGG | 0.607107 | 1.2:-78303180 | MS.gene93832:CDS |
| CAAGTTGCATGTCATCGTGA+TGG | 0.608644 | 1.2:-78303190 | MS.gene93832:CDS |
| CTTGATCAATGAACGTGATG+AGG | 0.616661 | 1.2:-78303094 | MS.gene93832:CDS |
| CCCAAAGAGAGCAATGCAAG+TGG | 0.621311 | 1.2:+78304295 | None:intergenic |
| TCATCGTGATGGACGACACA+GGG | 0.632753 | 1.2:-78303179 | MS.gene93832:CDS |
| CTTGCAAGGGTGTAGTCCCA+AGG | 0.637224 | 1.2:-78303293 | MS.gene93832:intron |
| ACGGAGCACTCCATTGTCAA+CGG | 0.655947 | 1.2:+78303332 | None:intergenic |
| AAAGGATGGAAGGAAAAGCA+GGG | 0.682942 | 1.2:-78304448 | MS.gene93832:CDS |
| GAGCACTCCATTGTCAACGG+TGG | 0.720804 | 1.2:+78303335 | None:intergenic |
| TAAGTCATCTGATAAAGACG+CGG | 0.732519 | 1.2:+78303596 | None:intergenic |
| ATATCAATATAGTAGGTGTG+TGG | 0.756687 | 1.2:+78304226 | None:intergenic |
| AAGCATGATTGAGTCAACTG+AGG | 0.787148 | 1.2:-78303547 | MS.gene93832:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATATAAAAATGTAAA+TGG | + | chr1.2:78303723-78303742 | None:intergenic | 10.0% |
| !!! | TTTTATATGTTATAGAATAA+AGG | - | chr1.2:78303730-78303749 | MS.gene93832:intron | 10.0% |
| !! | TATATAATTGTATAAATGTG+TGG | - | chr1.2:78304653-78304672 | MS.gene93832:CDS | 15.0% |
| !!! | CATTTTTCATTCTAATAAAA+GGG | + | chr1.2:78304049-78304068 | None:intergenic | 15.0% |
| !!! | GAAATTTTTAGATGTATTTT+TGG | - | chr1.2:78304205-78304224 | MS.gene93832:CDS | 15.0% |
| !! | AAATATTTACAGATATGTCA+AGG | - | chr1.2:78304275-78304294 | MS.gene93832:CDS | 20.0% |
| !! | ATTGTCCAATTATTATCAAT+AGG | - | chr1.2:78303953-78303972 | MS.gene93832:intron | 20.0% |
| !! | GATATAGTTGATTATTTGAT+AGG | - | chr1.2:78304498-78304517 | MS.gene93832:intron | 20.0% |
| !! | TATTACCAAAATATCAATTC+AGG | + | chr1.2:78303381-78303400 | None:intergenic | 20.0% |
| !!! | ACATTTTATTATTTTTGAGC+AGG | - | chr1.2:78304716-78304735 | MS.gene93832:CDS | 20.0% |
| !!! | CATTTTATTATTTTTGAGCA+GGG | - | chr1.2:78304717-78304736 | MS.gene93832:CDS | 20.0% |
| !!! | GCATTTTTCATTCTAATAAA+AGG | + | chr1.2:78304050-78304069 | None:intergenic | 20.0% |
| !!! | TGTAACCTATTGATAATAAT+TGG | + | chr1.2:78303961-78303980 | None:intergenic | 20.0% |
| !!! | TGTCGAATTTTTGAAAAATT+AGG | - | chr1.2:78303609-78303628 | MS.gene93832:CDS | 20.0% |
| ! | AACTGCAATATCAATATAGT+AGG | + | chr1.2:78303497-78303516 | None:intergenic | 25.0% |
| ! | AATATCAATTCAGGAACATA+AGG | + | chr1.2:78303372-78303391 | None:intergenic | 25.0% |
| ! | AATTGAAAGAGGTGATATAA+GGG | - | chr1.2:78303235-78303254 | MS.gene93832:intron | 25.0% |
| ! | ATCAAAAAGAACAAAAGTAG+TGG | + | chr1.2:78304561-78304580 | None:intergenic | 25.0% |
| ! | CAAATGTATGAAATTCCTAA+AGG | + | chr1.2:78303165-78303184 | None:intergenic | 25.0% |
| ! | TAATTGAAAGAGGTGATATA+AGG | - | chr1.2:78303234-78303253 | MS.gene93832:intron | 25.0% |
| ! | TACGTAATTTCAGATGTTAT+TGG | - | chr1.2:78303206-78303225 | MS.gene93832:intron | 25.0% |
| !! | ATGTTAGTACAAATTTTCGT+CGG | + | chr1.2:78304700-78304719 | None:intergenic | 25.0% |
| !! | ATGTTCCTGAATTGATATTT+TGG | - | chr1.2:78303373-78303392 | MS.gene93832:intron | 25.0% |
| !! | ATTGTTAGTGGATATCTTTA+AGG | + | chr1.2:78303829-78303848 | None:intergenic | 25.0% |
| !! | GGATAAAATTTGTTTACCTT+GGG | + | chr1.2:78304439-78304458 | None:intergenic | 25.0% |
| !! | TTTGAAAAATTAGGTGCTAT+GGG | - | chr1.2:78303618-78303637 | MS.gene93832:CDS | 25.0% |
| !!! | AGAATAAAGGCAAGTTTTTT+TGG | - | chr1.2:78303743-78303762 | MS.gene93832:intron | 25.0% |
| !!! | ATTTTTGTTTTTATCATGCG+TGG | - | chr1.2:78304466-78304485 | MS.gene93832:CDS | 25.0% |
| !!! | TTTTGAAAAATTAGGTGCTA+TGG | - | chr1.2:78303617-78303636 | MS.gene93832:CDS | 25.0% |
| AAATGTGTGGTCTATATATG+AGG | - | chr1.2:78304666-78304685 | MS.gene93832:CDS | 30.0% | |
| ATATCAATATAGTAGGTGTG+TGG | + | chr1.2:78303490-78303509 | None:intergenic | 30.0% | |
| ATTCCTAAAGGAATGCTTAT+AGG | + | chr1.2:78303153-78303172 | None:intergenic | 30.0% | |
| ATTGGTCATGTAATTGAAAG+AGG | - | chr1.2:78303224-78303243 | MS.gene93832:intron | 30.0% | |
| CATCAGAAAACTATTGTTAG+TGG | + | chr1.2:78303841-78303860 | None:intergenic | 30.0% | |
| GAAGAGAGAATTTCATTGAA+CGG | + | chr1.2:78303057-78303076 | None:intergenic | 30.0% | |
| TCATGCTTTCAATTGTCATT+CGG | + | chr1.2:78304154-78304173 | None:intergenic | 30.0% | |
| TGAACTCAAAAACGTTCATA+GGG | + | chr1.2:78303032-78303051 | None:intergenic | 30.0% | |
| TGATATAAGGGAAACTGAAA+AGG | - | chr1.2:78303247-78303266 | MS.gene93832:intron | 30.0% | |
| TTGAACTCAAAAACGTTCAT+AGG | + | chr1.2:78303033-78303052 | None:intergenic | 30.0% | |
| TTTACAGATATGTCAAGGTT+CGG | - | chr1.2:78304280-78304299 | MS.gene93832:CDS | 30.0% | |
| ! | CACTAACAATAGTTTTCTGA+TGG | - | chr1.2:78303839-78303858 | MS.gene93832:intron | 30.0% |
| ! | CGGATAAAATTTGTTTACCT+TGG | + | chr1.2:78304440-78304459 | None:intergenic | 30.0% |
| ! | TTGGTCGTAATTAAGTTGTT+TGG | - | chr1.2:78303762-78303781 | MS.gene93832:intron | 30.0% |
| !!! | GACAAAATTGTGACCTTTTT+TGG | - | chr1.2:78303452-78303471 | MS.gene93832:intron | 30.0% |
| ACTATATGTGAGATCGAAAC+TGG | - | chr1.2:78304311-78304330 | MS.gene93832:intron | 35.0% | |
| AGTTTCGATCTCACATATAG+TGG | + | chr1.2:78304312-78304331 | None:intergenic | 35.0% | |
| ATAAGGGAAACTGAAAAGGA+TGG | - | chr1.2:78303251-78303270 | MS.gene93832:intron | 35.0% | |
| CACATTATGCCCAATAAACT+GGG | + | chr1.2:78304594-78304613 | None:intergenic | 35.0% | |
| CTACCTATAAGCATTCCTTT+AGG | - | chr1.2:78303147-78303166 | MS.gene93832:CDS | 35.0% | |
| CTATATGTGAGATCGAAACT+GGG | - | chr1.2:78304312-78304331 | MS.gene93832:intron | 35.0% | |
| GAGTTGCTAATGTGTTTAAC+GGG | - | chr1.2:78303640-78303659 | MS.gene93832:CDS | 35.0% | |
| GGAGTTGCTAATGTGTTTAA+CGG | - | chr1.2:78303639-78303658 | MS.gene93832:CDS | 35.0% | |
| GGTTATTGATCTCACTTTAG+AGG | - | chr1.2:78303286-78303305 | MS.gene93832:intron | 35.0% | |
| TAAGTCATCTGATAAAGACG+CGG | + | chr1.2:78304120-78304139 | None:intergenic | 35.0% | |
| TATATGTGAGATCGAAACTG+GGG | - | chr1.2:78304313-78304332 | MS.gene93832:intron | 35.0% | |
| TCGCTACTCTTCTATTGAAT+TGG | - | chr1.2:78304021-78304040 | MS.gene93832:CDS | 35.0% | |
| TGCAAGACATGCATGTATTT+AGG | - | chr1.2:78303518-78303537 | MS.gene93832:intron | 35.0% | |
| ! | AAGTTTTACACTTGCGACAA+CGG | + | chr1.2:78304403-78304422 | None:intergenic | 35.0% |
| ! | GTCGTAATTAAGTTGTTTGG+AGG | - | chr1.2:78303765-78303784 | MS.gene93832:intron | 35.0% |
| ! | TTTGTCTGTTTCTTTGTAGC+TGG | - | chr1.2:78303322-78303341 | MS.gene93832:CDS | 35.0% |
| ! | TTTTGTTCTTTTTGATCGCC+AGG | - | chr1.2:78304565-78304584 | MS.gene93832:intron | 35.0% |
| AAAACGTTCATAGGGATAGC+AGG | + | chr1.2:78303024-78303043 | None:intergenic | 40.0% | |
| AAAAGGATGGAAGGAAAAGC+AGG | - | chr1.2:78303264-78303283 | MS.gene93832:intron | 40.0% | |
| AAAGGATGGAAGGAAAAGCA+GGG | - | chr1.2:78303265-78303284 | MS.gene93832:intron | 40.0% | |
| AAGCATGATTGAGTCAACTG+AGG | - | chr1.2:78304166-78304185 | MS.gene93832:intron | 40.0% | |
| AATAAGCGACCCATAAACGA+TGG | + | chr1.2:78303796-78303815 | None:intergenic | 40.0% | |
| AATTCTCTCTTCAACTGTCG+AGG | - | chr1.2:78303065-78303084 | MS.gene93832:intron | 40.0% | |
| AGAAGATGTGCACACAGAAA+AGG | - | chr1.2:78303895-78303914 | MS.gene93832:intron | 40.0% | |
| AGACTCAAGTAGCAAGGTAA+GGG | + | chr1.2:78304002-78304021 | None:intergenic | 40.0% | |
| CGCAAGTGTAAAACTTGCAA+GGG | - | chr1.2:78304407-78304426 | MS.gene93832:intron | 40.0% | |
| CTTGATCAATGAACGTGATG+AGG | - | chr1.2:78304619-78304638 | MS.gene93832:intron | 40.0% | |
| GAAGATGTGCACACAGAAAA+GGG | - | chr1.2:78303896-78303915 | MS.gene93832:intron | 40.0% | |
| GCACATTATGCCCAATAAAC+TGG | + | chr1.2:78304595-78304614 | None:intergenic | 40.0% | |
| GCTTTCAATTGTCATTCGGT+TGG | + | chr1.2:78304150-78304169 | None:intergenic | 40.0% | |
| GGGACTAAGCTGATACTTAA+TGG | - | chr1.2:78303660-78303679 | MS.gene93832:intron | 40.0% | |
| GTTGTCATGGTTGCCAAAAA+AGG | + | chr1.2:78303468-78303487 | None:intergenic | 40.0% | |
| TCGCAAGTGTAAAACTTGCA+AGG | - | chr1.2:78304406-78304425 | MS.gene93832:intron | 40.0% | |
| TCGTTTATGGGTCGCTTATT+TGG | - | chr1.2:78303796-78303815 | MS.gene93832:intron | 40.0% | |
| TTGAAATCTGGCTGACACTT+CGG | + | chr1.2:78304088-78304107 | None:intergenic | 40.0% | |
| ACCACTTGCATTGCTCTCTT+TGG | - | chr1.2:78303417-78303436 | MS.gene93832:intron | 45.0% | |
| CAAGTTGCATGTCATCGTGA+TGG | - | chr1.2:78304523-78304542 | MS.gene93832:intron | 45.0% | |
| CACTTGCATTGCTCTCTTTG+GGG | - | chr1.2:78303419-78303438 | MS.gene93832:intron | 45.0% | |
| CATGATTGAGTCAACTGAGG+TGG | - | chr1.2:78304169-78304188 | MS.gene93832:intron | 45.0% | |
| CCACTTGCATTGCTCTCTTT+GGG | - | chr1.2:78303418-78303437 | MS.gene93832:intron | 45.0% | |
| GAGACTCAAGTAGCAAGGTA+AGG | + | chr1.2:78304003-78304022 | None:intergenic | 45.0% | |
| GAGGTCCTACCATCGTTTAT+GGG | - | chr1.2:78303784-78303803 | MS.gene93832:intron | 45.0% | |
| GGGAAACTGAAAAGGATGGA+AGG | - | chr1.2:78303255-78303274 | MS.gene93832:intron | 45.0% | |
| TAGTAGGTGTGTGGTTGTCA+TGG | + | chr1.2:78303481-78303500 | None:intergenic | 45.0% | |
| TGAAATCTGGCTGACACTTC+GGG | + | chr1.2:78304087-78304106 | None:intergenic | 45.0% | |
| ! | AGATCGAAACTGGGGTTGAT+TGG | - | chr1.2:78304321-78304340 | MS.gene93832:intron | 45.0% |
| !! | AACTGTCGAGGAAGTGTCTA+CGG | - | chr1.2:78303077-78303096 | MS.gene93832:intron | 45.0% |
| !! | ATAAAAACAAAAATTATATT+CGG | + | chr1.2:78304460-78304479 | None:intergenic | 5.0% |
| AAGTCGCTGCGTACATGACA+GGG | - | chr1.2:78303694-78303713 | MS.gene93832:intron | 50.0% | |
| AGCGACCCATAAACGATGGT+AGG | + | chr1.2:78303792-78303811 | None:intergenic | 50.0% | |
| ATGCACCCAGTGTGCTTCAT+TGG | - | chr1.2:78304355-78304374 | MS.gene93832:intron | 50.0% | |
| CCCAAAGAGAGCAATGCAAG+TGG | + | chr1.2:78303421-78303440 | None:intergenic | 50.0% | |
| CGGAGCTGTTCGTTGAAATC+TGG | + | chr1.2:78304100-78304119 | None:intergenic | 50.0% | |
| GATAGCAGGCGAGTGTACTT+TGG | + | chr1.2:78303010-78303029 | None:intergenic | 50.0% | |
| GCCAGGTGACCCAGTTTATT+GGG | - | chr1.2:78304582-78304601 | MS.gene93832:intron | 50.0% | |
| GGAGGTCCTACCATCGTTTA+TGG | - | chr1.2:78303783-78303802 | MS.gene93832:intron | 50.0% | |
| GTAGCGAGACTCAAGTAGCA+AGG | + | chr1.2:78304008-78304027 | None:intergenic | 50.0% | |
| TCATTGGCCACCGTTGACAA+TGG | - | chr1.2:78304371-78304390 | MS.gene93832:intron | 50.0% | |
| ! | ACGGAGCACTCCATTGTCAA+CGG | + | chr1.2:78304384-78304403 | None:intergenic | 50.0% |
| !! | ACTGTCGAGGAAGTGTCTAC+GGG | - | chr1.2:78303078-78303097 | MS.gene93832:intron | 50.0% |
| !! | TCATCGTGATGGACGACACA+GGG | - | chr1.2:78304534-78304553 | MS.gene93832:intron | 50.0% |
| CGCCAGGTGACCCAGTTTAT+TGG | - | chr1.2:78304581-78304600 | MS.gene93832:intron | 55.0% | |
| GAAGTCGCTGCGTACATGAC+AGG | - | chr1.2:78303693-78303712 | MS.gene93832:intron | 55.0% | |
| GAGCACTCCATTGTCAACGG+TGG | + | chr1.2:78304381-78304400 | None:intergenic | 55.0% | |
| GCCCAATAAACTGGGTCACC+TGG | + | chr1.2:78304586-78304605 | None:intergenic | 55.0% | |
| GGTGGCCAATGAAGCACACT+GGG | + | chr1.2:78304363-78304382 | None:intergenic | 55.0% | |
| GTCATGTACGCAGCGACTTC+AGG | + | chr1.2:78303693-78303712 | None:intergenic | 55.0% | |
| ! | CTTGCAAGGGTGTAGTCCCA+AGG | - | chr1.2:78304420-78304439 | MS.gene93832:CDS | 55.0% |
| !! | GTCATCGTGATGGACGACAC+AGG | - | chr1.2:78304533-78304552 | MS.gene93832:intron | 55.0% |
| CGGTGGCCAATGAAGCACAC+TGG | + | chr1.2:78304364-78304383 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 78302988 | 78304747 | 78302988 | ID=MS.gene93832 |
| chr1.2 | mRNA | 78302988 | 78304747 | 78302988 | ID=MS.gene93832.t1;Parent=MS.gene93832 |
| chr1.2 | exon | 78304636 | 78304747 | 78304636 | ID=MS.gene93832.t1.exon1;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78304636 | 78304747 | 78304636 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78304420 | 78304516 | 78304420 | ID=MS.gene93832.t1.exon2;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78304420 | 78304516 | 78304420 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78304196 | 78304323 | 78304196 | ID=MS.gene93832.t1.exon3;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78304196 | 78304323 | 78304196 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78304020 | 78304104 | 78304020 | ID=MS.gene93832.t1.exon4;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78304020 | 78304104 | 78304020 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78303548 | 78303677 | 78303548 | ID=MS.gene93832.t1.exon5;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78303548 | 78303677 | 78303548 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78303294 | 78303370 | 78303294 | ID=MS.gene93832.t1.exon6;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78303294 | 78303370 | 78303294 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78303087 | 78303215 | 78303087 | ID=MS.gene93832.t1.exon7;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78303087 | 78303215 | 78303087 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| chr1.2 | exon | 78302988 | 78302997 | 78302988 | ID=MS.gene93832.t1.exon8;Parent=MS.gene93832.t1 |
| chr1.2 | CDS | 78302988 | 78302997 | 78302988 | ID=cds.MS.gene93832.t1;Parent=MS.gene93832.t1 |
| Gene Sequence |
| Protein sequence |
