Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94267.t1 | XP_003623196.1 | 95.1 | 224 | 11 | 0 | 1 | 224 | 1 | 224 | 1.50E-117 | 432.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94267.t1 | P32110 | 70.7 | 225 | 65 | 1 | 1 | 224 | 1 | 225 | 8.1e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94267.t1 | G7L6H0 | 95.1 | 224 | 11 | 0 | 1 | 224 | 1 | 224 | 1.1e-117 | 432.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053963 | MS.gene94267 | 0.804028 | 2.63E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene94267 | 0.806101 | 9.69E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene94267 | 0.804454 | 2.14E-49 | -1.69E-46 |
| MS.gene055147 | MS.gene94267 | 0.822269 | 2.59E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene94267 | 0.815507 | 8.92E-52 | -1.69E-46 |
| MS.gene055149 | MS.gene94267 | 0.852383 | 4.79E-61 | -1.69E-46 |
| MS.gene058592 | MS.gene94267 | 0.80064 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94267.t1 | MTR_7g065600 | 95.089 | 224 | 11 | 0 | 1 | 224 | 1 | 224 | 1.43e-159 | 440 |
| MS.gene94267.t1 | MTR_7g065590 | 79.464 | 224 | 46 | 0 | 1 | 224 | 1 | 224 | 2.49e-134 | 376 |
| MS.gene94267.t1 | MTR_7g065290 | 78.125 | 224 | 49 | 0 | 1 | 224 | 1 | 224 | 1.15e-131 | 370 |
| MS.gene94267.t1 | MTR_7g065265 | 74.554 | 224 | 57 | 0 | 1 | 224 | 1 | 224 | 8.44e-125 | 352 |
| MS.gene94267.t1 | MTR_7g065270 | 74.107 | 224 | 58 | 0 | 1 | 224 | 1 | 224 | 8.43e-124 | 350 |
| MS.gene94267.t1 | MTR_7g065230 | 75.893 | 224 | 49 | 1 | 1 | 224 | 1 | 219 | 1.20e-123 | 349 |
| MS.gene94267.t1 | MTR_7g065720 | 69.333 | 225 | 68 | 1 | 1 | 224 | 1 | 225 | 1.13e-114 | 327 |
| MS.gene94267.t1 | MTR_7g065260 | 75.556 | 225 | 54 | 1 | 1 | 224 | 8 | 232 | 5.99e-114 | 325 |
| MS.gene94267.t1 | MTR_7g065660 | 66.816 | 223 | 74 | 0 | 1 | 223 | 1 | 223 | 2.22e-112 | 321 |
| MS.gene94267.t1 | MTR_7g065740 | 63.393 | 224 | 81 | 1 | 1 | 223 | 1 | 224 | 2.24e-107 | 308 |
| MS.gene94267.t1 | MTR_7g065630 | 66.368 | 223 | 71 | 1 | 1 | 223 | 19 | 237 | 2.68e-106 | 306 |
| MS.gene94267.t1 | MTR_7g065750 | 64.286 | 224 | 79 | 1 | 1 | 223 | 1 | 224 | 3.01e-104 | 300 |
| MS.gene94267.t1 | MTR_4g019790 | 60.987 | 223 | 87 | 0 | 1 | 223 | 1 | 223 | 2.19e-102 | 296 |
| MS.gene94267.t1 | MTR_7g065640 | 60.987 | 223 | 69 | 1 | 1 | 223 | 1 | 205 | 1.81e-98 | 285 |
| MS.gene94267.t1 | MTR_7g065710 | 64.251 | 207 | 70 | 1 | 8 | 214 | 5 | 207 | 2.12e-95 | 278 |
| MS.gene94267.t1 | MTR_4g019780 | 61.215 | 214 | 81 | 2 | 3 | 215 | 4 | 216 | 4.49e-93 | 272 |
| MS.gene94267.t1 | MTR_7g065680 | 65.455 | 220 | 72 | 1 | 1 | 220 | 1 | 216 | 1.46e-91 | 268 |
| MS.gene94267.t1 | MTR_7g065700 | 63.551 | 214 | 74 | 1 | 1 | 214 | 1 | 210 | 8.01e-87 | 256 |
| MS.gene94267.t1 | MTR_1g090150 | 44.796 | 221 | 117 | 2 | 5 | 222 | 1 | 219 | 8.04e-65 | 200 |
| MS.gene94267.t1 | MTR_6g080440 | 47.826 | 207 | 106 | 2 | 8 | 213 | 4 | 209 | 4.18e-64 | 198 |
| MS.gene94267.t1 | MTR_8g087425 | 46.330 | 218 | 115 | 2 | 4 | 220 | 2 | 218 | 1.76e-63 | 197 |
| MS.gene94267.t1 | MTR_3g099757 | 49.091 | 220 | 110 | 2 | 5 | 223 | 3 | 221 | 4.07e-63 | 196 |
| MS.gene94267.t1 | MTR_1g115195 | 45.540 | 213 | 113 | 2 | 7 | 216 | 3 | 215 | 9.78e-59 | 185 |
| MS.gene94267.t1 | MTR_8g087410 | 45.622 | 217 | 115 | 3 | 1 | 216 | 1 | 215 | 1.05e-58 | 185 |
| MS.gene94267.t1 | MTR_5g040430 | 40.991 | 222 | 123 | 3 | 1 | 215 | 1 | 221 | 2.15e-56 | 179 |
| MS.gene94267.t1 | MTR_1g090070 | 42.342 | 222 | 119 | 4 | 8 | 223 | 10 | 228 | 1.32e-54 | 174 |
| MS.gene94267.t1 | MTR_5g037380 | 43.182 | 220 | 115 | 3 | 1 | 212 | 1 | 218 | 9.21e-54 | 172 |
| MS.gene94267.t1 | MTR_1g090100 | 42.273 | 220 | 121 | 4 | 8 | 223 | 3 | 220 | 5.16e-53 | 170 |
| MS.gene94267.t1 | MTR_1g090060 | 41.176 | 221 | 124 | 4 | 8 | 224 | 4 | 222 | 6.81e-52 | 167 |
| MS.gene94267.t1 | MTR_8g061950 | 42.466 | 219 | 118 | 3 | 5 | 215 | 3 | 221 | 1.89e-50 | 164 |
| MS.gene94267.t1 | MTR_4g059730 | 38.967 | 213 | 126 | 2 | 6 | 215 | 3 | 214 | 3.37e-50 | 163 |
| MS.gene94267.t1 | MTR_1g090090 | 40.670 | 209 | 118 | 4 | 8 | 212 | 4 | 210 | 8.59e-49 | 159 |
| MS.gene94267.t1 | MTR_2g070200 | 40.196 | 204 | 118 | 3 | 6 | 207 | 3 | 204 | 1.15e-43 | 146 |
| MS.gene94267.t1 | MTR_2g070150 | 38.235 | 204 | 121 | 4 | 6 | 207 | 3 | 203 | 3.17e-42 | 142 |
| MS.gene94267.t1 | MTR_3g467420 | 42.000 | 200 | 111 | 4 | 7 | 204 | 9 | 205 | 3.50e-42 | 142 |
| MS.gene94267.t1 | MTR_2g070130 | 38.235 | 204 | 121 | 4 | 6 | 207 | 3 | 203 | 6.80e-41 | 139 |
| MS.gene94267.t1 | MTR_2g070180 | 37.745 | 204 | 122 | 4 | 6 | 207 | 3 | 203 | 1.01e-40 | 139 |
| MS.gene94267.t1 | MTR_4g124130 | 43.229 | 192 | 99 | 6 | 5 | 191 | 2 | 188 | 4.18e-40 | 137 |
| MS.gene94267.t1 | MTR_2g070140 | 37.436 | 195 | 117 | 4 | 21 | 213 | 2 | 193 | 1.96e-39 | 135 |
| MS.gene94267.t1 | MTR_3g467430 | 39.901 | 203 | 117 | 4 | 4 | 204 | 6 | 205 | 1.54e-38 | 133 |
| MS.gene94267.t1 | MTR_8g056940 | 42.632 | 190 | 102 | 5 | 6 | 192 | 3 | 188 | 2.51e-38 | 132 |
| MS.gene94267.t1 | MTR_5g076900 | 37.264 | 212 | 128 | 4 | 3 | 212 | 2 | 210 | 1.45e-37 | 130 |
| MS.gene94267.t1 | MTR_2g070210 | 37.441 | 211 | 125 | 5 | 6 | 212 | 3 | 210 | 1.92e-37 | 130 |
| MS.gene94267.t1 | MTR_2g070120 | 37.864 | 206 | 123 | 4 | 6 | 209 | 3 | 205 | 1.94e-37 | 130 |
| MS.gene94267.t1 | MTR_2g070070 | 38.693 | 199 | 117 | 4 | 8 | 204 | 5 | 200 | 4.61e-36 | 127 |
| MS.gene94267.t1 | MTR_2g070060 | 37.129 | 202 | 122 | 4 | 8 | 207 | 5 | 203 | 2.59e-35 | 125 |
| MS.gene94267.t1 | MTR_2g070110 | 36.715 | 207 | 125 | 4 | 8 | 212 | 5 | 207 | 1.33e-30 | 112 |
| MS.gene94267.t1 | MTR_0186s0030 | 47.328 | 131 | 65 | 3 | 16 | 144 | 13 | 141 | 2.49e-30 | 109 |
| MS.gene94267.t1 | MTR_2g072120 | 44.615 | 65 | 35 | 1 | 51 | 114 | 2 | 66 | 3.60e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94267.t1 | AT3G09270 | 50.893 | 224 | 106 | 4 | 3 | 223 | 2 | 224 | 2.29e-76 | 230 |
| MS.gene94267.t1 | AT2G29420 | 48.402 | 219 | 111 | 2 | 3 | 220 | 5 | 222 | 7.25e-73 | 221 |
| MS.gene94267.t1 | AT2G29490 | 48.325 | 209 | 105 | 3 | 1 | 207 | 1 | 208 | 9.70e-61 | 190 |
| MS.gene94267.t1 | AT2G29450 | 44.843 | 223 | 121 | 2 | 3 | 223 | 2 | 224 | 2.80e-58 | 184 |
| MS.gene94267.t1 | AT2G29460 | 44.444 | 225 | 122 | 3 | 1 | 223 | 1 | 224 | 4.52e-57 | 181 |
| MS.gene94267.t1 | AT2G29480 | 43.556 | 225 | 124 | 3 | 1 | 223 | 1 | 224 | 2.06e-55 | 176 |
| MS.gene94267.t1 | AT2G29440 | 43.111 | 225 | 124 | 4 | 1 | 223 | 1 | 223 | 2.75e-54 | 174 |
| MS.gene94267.t1 | AT2G29470 | 44.762 | 210 | 112 | 4 | 1 | 207 | 1 | 209 | 2.03e-53 | 171 |
| MS.gene94267.t1 | AT1G10370 | 43.439 | 221 | 116 | 3 | 1 | 214 | 1 | 219 | 1.38e-52 | 169 |
| MS.gene94267.t1 | AT1G69930 | 38.839 | 224 | 131 | 2 | 2 | 219 | 7 | 230 | 2.44e-51 | 166 |
| MS.gene94267.t1 | AT1G10360 | 41.262 | 206 | 114 | 2 | 6 | 204 | 4 | 209 | 9.81e-50 | 162 |
| MS.gene94267.t1 | AT1G59700 | 44.037 | 218 | 114 | 3 | 5 | 214 | 4 | 221 | 9.50e-49 | 160 |
| MS.gene94267.t1 | AT1G59670 | 43.269 | 208 | 110 | 3 | 5 | 204 | 4 | 211 | 3.20e-48 | 158 |
| MS.gene94267.t1 | AT1G27130 | 39.823 | 226 | 125 | 5 | 1 | 217 | 1 | 224 | 4.16e-48 | 158 |
| MS.gene94267.t1 | AT5G62480 | 39.474 | 228 | 127 | 4 | 5 | 222 | 6 | 232 | 1.66e-45 | 152 |
| MS.gene94267.t1 | AT1G17170 | 40.553 | 217 | 123 | 5 | 6 | 220 | 3 | 215 | 1.68e-44 | 148 |
| MS.gene94267.t1 | AT1G27140 | 38.767 | 227 | 129 | 4 | 1 | 218 | 1 | 226 | 3.65e-44 | 148 |
| MS.gene94267.t1 | AT1G78320 | 40.865 | 208 | 118 | 4 | 5 | 210 | 2 | 206 | 4.32e-44 | 147 |
| MS.gene94267.t1 | AT1G78380 | 41.063 | 207 | 117 | 4 | 8 | 212 | 5 | 208 | 1.77e-43 | 145 |
| MS.gene94267.t1 | AT1G78370 | 40.488 | 205 | 117 | 4 | 10 | 212 | 7 | 208 | 1.36e-42 | 143 |
| MS.gene94267.t1 | AT1G78340 | 45.402 | 174 | 92 | 3 | 6 | 177 | 3 | 175 | 1.61e-42 | 143 |
| MS.gene94267.t1 | AT1G74590 | 33.624 | 229 | 145 | 3 | 1 | 223 | 1 | 228 | 4.57e-42 | 142 |
| MS.gene94267.t1 | AT1G69920 | 36.564 | 227 | 134 | 4 | 1 | 217 | 26 | 252 | 1.24e-41 | 142 |
| MS.gene94267.t1 | AT1G53680 | 39.048 | 210 | 123 | 4 | 1 | 207 | 1 | 208 | 5.37e-41 | 139 |
| MS.gene94267.t1 | AT1G17180 | 37.799 | 209 | 125 | 4 | 6 | 212 | 3 | 208 | 2.81e-39 | 135 |
| MS.gene94267.t1 | AT1G78360 | 39.904 | 208 | 119 | 5 | 8 | 212 | 5 | 209 | 1.65e-38 | 133 |
| MS.gene94267.t1 | AT1G17190 | 40.933 | 193 | 107 | 5 | 1 | 191 | 1 | 188 | 9.93e-38 | 131 |
| MS.gene94267.t1 | AT3G43800 | 36.232 | 207 | 123 | 6 | 4 | 204 | 2 | 205 | 4.22e-36 | 127 |
| MS.gene94267.t1 | AT5G62480 | 31.718 | 227 | 120 | 4 | 5 | 222 | 6 | 206 | 8.70e-28 | 105 |
| MS.gene94267.t1 | AT5G62480 | 31.718 | 227 | 119 | 4 | 5 | 222 | 6 | 205 | 1.64e-27 | 104 |
| MS.gene94267.t1 | AT1G78320 | 33.816 | 207 | 107 | 4 | 5 | 210 | 2 | 179 | 2.57e-27 | 103 |
| MS.gene94267.t1 | AT2G02380 | 28.837 | 215 | 134 | 6 | 5 | 207 | 9 | 216 | 1.07e-16 | 76.3 |
| MS.gene94267.t1 | AT2G02390 | 29.358 | 218 | 133 | 7 | 3 | 207 | 4 | 213 | 2.21e-16 | 75.5 |
| MS.gene94267.t1 | AT2G02390 | 28.444 | 225 | 133 | 8 | 3 | 207 | 4 | 220 | 6.12e-14 | 68.9 |
| MS.gene94267.t1 | AT2G02390 | 40.206 | 97 | 54 | 2 | 3 | 96 | 4 | 99 | 8.18e-14 | 67.8 |
Find 45 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.3:+40584326 | MS.gene94267:CDS |
| GAGCTTAAGGATAATTTCTT+TGG | 0.282538 | 7.3:+40585377 | MS.gene94267:CDS |
| ACAGGAACTTTCTTATAAAC+AGG | 0.283283 | 7.3:-40584202 | None:intergenic |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.3:-40584301 | None:intergenic |
| AATTCTTGAGAATGAGCTTA+AGG | 0.354197 | 7.3:+40585364 | MS.gene94267:CDS |
| GGCAATTTATCCTTAACAAT+TGG | 0.359406 | 7.3:-40585545 | None:intergenic |
| TTCTTTGGTGGAGAGGAGAT+TGG | 0.368042 | 7.3:+40585392 | MS.gene94267:CDS |
| TTAAGGATAAATTGCCTCCT+AGG | 0.369576 | 7.3:+40585552 | MS.gene94267:CDS |
| TTGACTCCATTTGTAAAGCT+TGG | 0.384299 | 7.3:-40585507 | None:intergenic |
| CGCTAAGATGGCATCAAATC+AGG | 0.389304 | 7.3:+40584042 | None:intergenic |
| TGACTCCATTTGTAAAGCTT+GGG | 0.390868 | 7.3:-40585506 | None:intergenic |
| CACCAACCATCCAATTGTTA+AGG | 0.407650 | 7.3:+40585535 | MS.gene94267:CDS |
| TTTGTTGCTTCTTGTACAAT+GGG | 0.408906 | 7.3:-40585455 | None:intergenic |
| GTTTGTTGCTTCTTGTACAA+TGG | 0.430175 | 7.3:-40585456 | None:intergenic |
| ATCCTTAACAATTGGATGGT+TGG | 0.431746 | 7.3:-40585537 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.3:-40584244 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.3:+40584348 | MS.gene94267:CDS |
| CTTAAGGATAATTTCTTTGG+TGG | 0.454634 | 7.3:+40585380 | MS.gene94267:CDS |
| GGAGATTGCTCTAACATTGA+AGG | 0.460355 | 7.3:+40584114 | MS.gene94267:CDS |
| AATTTCCCAAGCTTTACAAA+TGG | 0.474830 | 7.3:+40585501 | MS.gene94267:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.3:-40584350 | None:intergenic |
| ATCTCCACCCTACTCACAAA+TGG | 0.497901 | 7.3:-40584097 | None:intergenic |
| CAATATCAGTTAGAAAAGGC+AGG | 0.504225 | 7.3:+40584148 | MS.gene94267:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.3:-40584220 | None:intergenic |
| GGCAAGTCCATTTGTGAGTA+GGG | 0.523330 | 7.3:+40584090 | MS.gene94267:CDS |
| AGAACGTGAGAAAGCTATTG+AGG | 0.524222 | 7.3:+40585322 | MS.gene94267:CDS |
| GGATAATTTCTTTGGTGGAG+AGG | 0.526031 | 7.3:+40585385 | MS.gene94267:CDS |
| ATTTATCCTTAACAATTGGA+TGG | 0.535918 | 7.3:-40585541 | None:intergenic |
| ATACCAATATCAGTTAGAAA+AGG | 0.539142 | 7.3:+40584144 | MS.gene94267:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.3:+40584315 | MS.gene94267:CDS |
| TTGAGTATGTCGATGAGACC+TGG | 0.549849 | 7.3:+40584269 | MS.gene94267:CDS |
| TAAGGATAAATTGCCTCCTA+GGG | 0.553036 | 7.3:+40585553 | MS.gene94267:CDS |
| CAGGAACTTTCTTATAAACA+GGG | 0.564477 | 7.3:-40584201 | None:intergenic |
| GATAAATTGCCTCCTAGGGA+AGG | 0.568115 | 7.3:+40585557 | MS.gene94267:CDS |
| AATATCAGTTAGAAAAGGCA+GGG | 0.582241 | 7.3:+40584149 | MS.gene94267:CDS |
| GTCAAAAGTCCTTCCCTAGG+AGG | 0.584137 | 7.3:-40585566 | None:intergenic |
| TAAGTCAAAAGTCCTTCCCT+AGG | 0.590406 | 7.3:-40585569 | None:intergenic |
| GAGATTGCTCTAACATTGAA+GGG | 0.597295 | 7.3:+40584115 | MS.gene94267:CDS |
| CGACATACTCAAGAATCACA+AGG | 0.607291 | 7.3:-40584258 | None:intergenic |
| TGGCAAGTCCATTTGTGAGT+AGG | 0.615908 | 7.3:+40584089 | MS.gene94267:CDS |
| ACCAGTGTTTAAGTGCTGCA+CGG | 0.628510 | 7.3:+40585273 | MS.gene94267:intron |
| CTTGGTCCAGAAACGAGCCA+AGG | 0.682377 | 7.3:-40584332 | None:intergenic |
| TTGTTGCTTCTTGTACAATG+GGG | 0.684989 | 7.3:-40585454 | None:intergenic |
| AAGTCCATTTGTGAGTAGGG+TGG | 0.696953 | 7.3:+40584093 | MS.gene94267:CDS |
| GACATACTCAAGAATCACAA+GGG | 0.702786 | 7.3:-40584257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTCTTTTTAAAATTA+CGG | - | chr7.3:40584906-40584925 | None:intergenic | 10.0% |
| !!! | TAGTTTTCATTTTTAAATTA+CGG | + | chr7.3:40584777-40584796 | MS.gene94267:intron | 10.0% |
| !! | AATAAATATGATATTTGAAG+CGG | - | chr7.3:40585010-40585029 | None:intergenic | 15.0% |
| !! | AATATTTATGAAGAATAATC+TGG | + | chr7.3:40585140-40585159 | MS.gene94267:intron | 15.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.3:40584223-40584242 | None:intergenic | 20.0% |
| !!! | TCACTTTTAAAGTGTATAAA+TGG | + | chr7.3:40584448-40584467 | MS.gene94267:intron | 20.0% |
| ! | ACACTGTATATTATATGTAG+GGG | - | chr7.3:40584498-40584517 | None:intergenic | 25.0% |
| ! | ATACCAATATCAGTTAGAAA+AGG | + | chr7.3:40584144-40584163 | MS.gene94267:CDS | 25.0% |
| ! | ATGACTATTATATATGCATG+TGG | + | chr7.3:40585048-40585067 | MS.gene94267:intron | 25.0% |
| ! | ATTTATCCTTAACAATTGGA+TGG | - | chr7.3:40585544-40585563 | None:intergenic | 25.0% |
| ! | GACACTGTATATTATATGTA+GGG | - | chr7.3:40584499-40584518 | None:intergenic | 25.0% |
| ! | TAAAATATTTCACAAGCATG+TGG | + | chr7.3:40584584-40584603 | MS.gene94267:intron | 25.0% |
| !! | TGAAATATAATGACTTGTGA+CGG | - | chr7.3:40585097-40585116 | None:intergenic | 25.0% |
| !!! | AACACTGGTTTCAAAAATTA+AGG | - | chr7.3:40585262-40585281 | None:intergenic | 25.0% |
| AAATACCACAAACTTCAGTA+AGG | + | chr7.3:40584709-40584728 | MS.gene94267:intron | 30.0% | |
| AATACCACAAACTTCAGTAA+GGG | + | chr7.3:40584710-40584729 | MS.gene94267:intron | 30.0% | |
| AATATCAGTTAGAAAAGGCA+GGG | + | chr7.3:40584149-40584168 | MS.gene94267:CDS | 30.0% | |
| AATTCTTGAGAATGAGCTTA+AGG | + | chr7.3:40585364-40585383 | MS.gene94267:CDS | 30.0% | |
| AATTTCCCAAGCTTTACAAA+TGG | + | chr7.3:40585501-40585520 | MS.gene94267:CDS | 30.0% | |
| ACAGGAACTTTCTTATAAAC+AGG | - | chr7.3:40584205-40584224 | None:intergenic | 30.0% | |
| AGAGAAAAACATAATGCATG+TGG | + | chr7.3:40584664-40584683 | MS.gene94267:intron | 30.0% | |
| CACTGTATATTATATGTAGG+GGG | - | chr7.3:40584497-40584516 | None:intergenic | 30.0% | |
| CAGGAACTTTCTTATAAACA+GGG | - | chr7.3:40584204-40584223 | None:intergenic | 30.0% | |
| CTTAAGGATAATTTCTTTGG+TGG | + | chr7.3:40585380-40585399 | MS.gene94267:CDS | 30.0% | |
| GAGCTTAAGGATAATTTCTT+TGG | + | chr7.3:40585377-40585396 | MS.gene94267:CDS | 30.0% | |
| GGACACTGTATATTATATGT+AGG | - | chr7.3:40584500-40584519 | None:intergenic | 30.0% | |
| GGCAATTTATCCTTAACAAT+TGG | - | chr7.3:40585548-40585567 | None:intergenic | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.3:40584353-40584372 | None:intergenic | 30.0% | |
| ! | GCATTATGTTTTTCTCTATG+CGG | - | chr7.3:40584661-40584680 | None:intergenic | 30.0% |
| ! | TTTGTTGCTTCTTGTACAAT+GGG | - | chr7.3:40585458-40585477 | None:intergenic | 30.0% |
| !! | CAATATTGGATTTTGTTTCC+AGG | - | chr7.3:40584290-40584309 | None:intergenic | 30.0% |
| ATACGCTAGAGAGACATTTA+GGG | - | chr7.3:40584973-40584992 | None:intergenic | 35.0% | |
| ATATTTCACAAGCATGTGGA+TGG | + | chr7.3:40584588-40584607 | MS.gene94267:intron | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.3:40584247-40584266 | None:intergenic | 35.0% | |
| ATCCTTAACAATTGGATGGT+TGG | - | chr7.3:40585540-40585559 | None:intergenic | 35.0% | |
| CAATATCAGTTAGAAAAGGC+AGG | + | chr7.3:40584148-40584167 | MS.gene94267:CDS | 35.0% | |
| GAATTACGTTCATGTGATCT+CGG | - | chr7.3:40584535-40584554 | None:intergenic | 35.0% | |
| GACATACTCAAGAATCACAA+GGG | - | chr7.3:40584260-40584279 | None:intergenic | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.3:40584348-40584367 | MS.gene94267:CDS | 35.0% | |
| GAGATTGCTCTAACATTGAA+GGG | + | chr7.3:40584115-40584134 | MS.gene94267:CDS | 35.0% | |
| GTATATTATATGTAGGGGGT+CGG | - | chr7.3:40584493-40584512 | None:intergenic | 35.0% | |
| TAAGGATAAATTGCCTCCTA+GGG | + | chr7.3:40585553-40585572 | MS.gene94267:CDS | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | - | chr7.3:40584304-40584323 | None:intergenic | 35.0% | |
| TATACGCTAGAGAGACATTT+AGG | - | chr7.3:40584974-40584993 | None:intergenic | 35.0% | |
| TGACTCCATTTGTAAAGCTT+GGG | - | chr7.3:40585509-40585528 | None:intergenic | 35.0% | |
| TTAAGGATAAATTGCCTCCT+AGG | + | chr7.3:40585552-40585571 | MS.gene94267:CDS | 35.0% | |
| TTGACTCCATTTGTAAAGCT+TGG | - | chr7.3:40585510-40585529 | None:intergenic | 35.0% | |
| TTTGGATTGAGGGTTTAAGA+GGG | - | chr7.3:40584946-40584965 | None:intergenic | 35.0% | |
| ! | CAGGAAAATGTGAAGCTTTT+TGG | + | chr7.3:40584061-40584080 | MS.gene94267:CDS | 35.0% |
| ! | CTGCCTTTTCTAACTGATAT+TGG | - | chr7.3:40584150-40584169 | None:intergenic | 35.0% |
| ! | GTTTGTTGCTTCTTGTACAA+TGG | - | chr7.3:40585459-40585478 | None:intergenic | 35.0% |
| ! | TTGTTGCTTCTTGTACAATG+GGG | - | chr7.3:40585457-40585476 | None:intergenic | 35.0% |
| !! | TATAATGACTTGTGACGGAT+TGG | - | chr7.3:40585092-40585111 | None:intergenic | 35.0% |
| !!! | CTGCTGTTTTCATAGCTTTT+TGG | + | chr7.3:40585429-40585448 | MS.gene94267:CDS | 35.0% |
| !!! | TGTGAAGCTTTTTGGAATGA+TGG | + | chr7.3:40584069-40584088 | MS.gene94267:CDS | 35.0% |
| AGAACGTGAGAAAGCTATTG+AGG | + | chr7.3:40585322-40585341 | MS.gene94267:CDS | 40.0% | |
| CACCAACCATCCAATTGTTA+AGG | + | chr7.3:40585535-40585554 | MS.gene94267:CDS | 40.0% | |
| CGACATACTCAAGAATCACA+AGG | - | chr7.3:40584261-40584280 | None:intergenic | 40.0% | |
| GGAGATTGCTCTAACATTGA+AGG | + | chr7.3:40584114-40584133 | MS.gene94267:CDS | 40.0% | |
| GGATAATTTCTTTGGTGGAG+AGG | + | chr7.3:40585385-40585404 | MS.gene94267:CDS | 40.0% | |
| GTTTGGATTGAGGGTTTAAG+AGG | - | chr7.3:40584947-40584966 | None:intergenic | 40.0% | |
| TAAGTCAAAAGTCCTTCCCT+AGG | - | chr7.3:40585572-40585591 | None:intergenic | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.3:40584315-40584334 | MS.gene94267:CDS | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr7.3:40584956-40584975 | None:intergenic | 40.0% | |
| TTGGATTGAGGGTTTAAGAG+GGG | - | chr7.3:40584945-40584964 | None:intergenic | 40.0% | |
| ! | AACTTCAGTAAGGGTGTGTT+TGG | + | chr7.3:40584719-40584738 | MS.gene94267:intron | 40.0% |
| ! | AGAGACATTTAGGGTGTGTT+TGG | - | chr7.3:40584964-40584983 | None:intergenic | 40.0% |
| ! | ATTTGAAGCGGTTCTCTATG+TGG | - | chr7.3:40584998-40585017 | None:intergenic | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.3:40584313-40584332 | None:intergenic | 40.0% |
| ! | TCTTTATTTGTGCGCATGTG+TGG | + | chr7.3:40584560-40584579 | MS.gene94267:intron | 40.0% |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr7.3:40584957-40584976 | None:intergenic | 40.0% |
| AAGTCCATTTGTGAGTAGGG+TGG | + | chr7.3:40584093-40584112 | MS.gene94267:CDS | 45.0% | |
| ATCTCCACCCTACTCACAAA+TGG | - | chr7.3:40584100-40584119 | None:intergenic | 45.0% | |
| CACACCCTTACTGAAGTTTG+TGG | - | chr7.3:40584717-40584736 | None:intergenic | 45.0% | |
| GATAAATTGCCTCCTAGGGA+AGG | + | chr7.3:40585557-40585576 | MS.gene94267:CDS | 45.0% | |
| GGCAAGTCCATTTGTGAGTA+GGG | + | chr7.3:40584090-40584109 | MS.gene94267:CDS | 45.0% | |
| TCATGTGATCTCGGTTCAGT+TGG | - | chr7.3:40584526-40584545 | None:intergenic | 45.0% | |
| TGGCAAGTCCATTTGTGAGT+AGG | + | chr7.3:40584089-40584108 | MS.gene94267:CDS | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | + | chr7.3:40584733-40584752 | MS.gene94267:intron | 45.0% | |
| TTCTTTGGTGGAGAGGAGAT+TGG | + | chr7.3:40585392-40585411 | MS.gene94267:CDS | 45.0% | |
| TTGAGTATGTCGATGAGACC+TGG | + | chr7.3:40584269-40584288 | MS.gene94267:CDS | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+CGG | + | chr7.3:40584737-40584756 | MS.gene94267:intron | 45.0% | |
| ! | ACCAGTGTTTAAGTGCTGCA+CGG | + | chr7.3:40585273-40585292 | MS.gene94267:intron | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | + | chr7.3:40584727-40584746 | MS.gene94267:intron | 45.0% |
| ! | TCAGTAAGGGTGTGTTTGGA+TGG | + | chr7.3:40584723-40584742 | MS.gene94267:intron | 45.0% |
| ! | TGATCTCGGTTCAGTTGGTA+GGG | - | chr7.3:40584521-40584540 | None:intergenic | 45.0% |
| GTCAAAAGTCCTTCCCTAGG+AGG | - | chr7.3:40585569-40585588 | None:intergenic | 50.0% | |
| GTGATCTCGGTTCAGTTGGT+AGG | - | chr7.3:40584522-40584541 | None:intergenic | 50.0% | |
| TCCGTGCAGCACTTAAACAC+TGG | - | chr7.3:40585277-40585296 | None:intergenic | 50.0% | |
| ! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.3:40584326-40584345 | MS.gene94267:CDS | 50.0% |
| ! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.3:40584322-40584341 | None:intergenic | 50.0% |
| ! | GTAAGGGTGTGTTTGGATGG+AGG | + | chr7.3:40584726-40584745 | MS.gene94267:intron | 50.0% |
| ! | TTGGATGGAGGGTTTAGGAC+GGG | + | chr7.3:40584738-40584757 | MS.gene94267:intron | 50.0% |
| CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.3:40584335-40584354 | None:intergenic | 55.0% | |
| GGTTTAAGAGGGGCAGAGAG+AGG | - | chr7.3:40584935-40584954 | None:intergenic | 55.0% | |
| TAAGAGGGGCAGAGAGAGGA+GGG | - | chr7.3:40584931-40584950 | None:intergenic | 55.0% | |
| TTAAGAGGGGCAGAGAGAGG+AGG | - | chr7.3:40584932-40584951 | None:intergenic | 55.0% | |
| ! | ATGGAGGGTTTAGGACGGGA+AGG | + | chr7.3:40584742-40584761 | MS.gene94267:intron | 55.0% |
| ! | TGGAGGGTTTAGGACGGGAA+GGG | + | chr7.3:40584743-40584762 | MS.gene94267:intron | 55.0% |
| GGGGGTCGGAGTTCGAACTT+CGG | - | chr7.3:40584479-40584498 | None:intergenic | 60.0% | |
| TAGGACGGGAAGGGAGGGAA+GGG | + | chr7.3:40584752-40584771 | MS.gene94267:intron | 60.0% | |
| TTAGGACGGGAAGGGAGGGA+AGG | + | chr7.3:40584751-40584770 | MS.gene94267:intron | 60.0% | |
| ! | AGGGTTTAGGACGGGAAGGG+AGG | + | chr7.3:40584746-40584765 | MS.gene94267:intron | 60.0% |
| ! | GGGTTTAGGACGGGAAGGGA+GGG | + | chr7.3:40584747-40584766 | MS.gene94267:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40584049 | 40585631 | 40584049 | ID=MS.gene94267 |
| chr7.3 | mRNA | 40584049 | 40585631 | 40584049 | ID=MS.gene94267.t1;Parent=MS.gene94267 |
| chr7.3 | exon | 40584049 | 40584369 | 40584049 | ID=MS.gene94267.t1.exon1;Parent=MS.gene94267.t1 |
| chr7.3 | CDS | 40584049 | 40584369 | 40584049 | ID=cds.MS.gene94267.t1;Parent=MS.gene94267.t1 |
| chr7.3 | exon | 40585278 | 40585631 | 40585278 | ID=MS.gene94267.t1.exon2;Parent=MS.gene94267.t1 |
| chr7.3 | CDS | 40585278 | 40585631 | 40585278 | ID=cds.MS.gene94267.t1;Parent=MS.gene94267.t1 |
| Gene Sequence |
| Protein sequence |
