Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94890.t1 | XP_013455212.1 | 97.6 | 508 | 12 | 0 | 1 | 508 | 1 | 508 | 1.40E-280 | 974.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94890.t1 | Q9SA38 | 48.8 | 498 | 244 | 6 | 15 | 503 | 14 | 509 | 2.4e-135 | 483.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94890.t1 | A0A072UJG0 | 97.6 | 508 | 12 | 0 | 1 | 508 | 1 | 508 | 1.0e-280 | 974.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene94890 | -0.807106 | 5.94E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene94890 | -0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene053549 | MS.gene94890 | 0.824331 | 8.55E-54 | -1.69E-46 |
| MS.gene057499 | MS.gene94890 | 0.804323 | 2.28E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene94890 | -0.826548 | 2.55E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene94890 | 0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene94890 | -0.806943 | 6.43E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene94890 | -0.816708 | 4.81E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94890.t1 | MTR_4g030040 | 97.638 | 508 | 12 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1018 |
| MS.gene94890.t1 | MTR_4g030040 | 95.481 | 509 | 22 | 1 | 1 | 508 | 1 | 509 | 0.0 | 988 |
| MS.gene94890.t1 | MTR_4g030210 | 82.549 | 510 | 82 | 2 | 1 | 504 | 1 | 509 | 0.0 | 847 |
| MS.gene94890.t1 | MTR_8g039190 | 70.717 | 502 | 140 | 3 | 6 | 504 | 11 | 508 | 0.0 | 721 |
| MS.gene94890.t1 | MTR_5g080050 | 67.123 | 511 | 161 | 2 | 1 | 504 | 1 | 511 | 0.0 | 679 |
| MS.gene94890.t1 | MTR_5g082760 | 65.759 | 514 | 161 | 3 | 6 | 504 | 8 | 521 | 0.0 | 662 |
| MS.gene94890.t1 | MTR_8g039070 | 63.546 | 502 | 143 | 4 | 6 | 504 | 8 | 472 | 0.0 | 625 |
| MS.gene94890.t1 | MTR_8g447340 | 44.747 | 514 | 267 | 6 | 10 | 507 | 9 | 521 | 5.42e-166 | 480 |
| MS.gene94890.t1 | MTR_2g081930 | 31.323 | 514 | 327 | 8 | 7 | 501 | 17 | 523 | 1.77e-80 | 260 |
| MS.gene94890.t1 | MTR_4g120720 | 38.206 | 301 | 146 | 7 | 77 | 371 | 2 | 268 | 2.05e-56 | 189 |
| MS.gene94890.t1 | MTR_2g081950 | 31.008 | 387 | 243 | 6 | 129 | 496 | 19 | 400 | 8.43e-47 | 168 |
| MS.gene94890.t1 | MTR_4g081490 | 29.199 | 387 | 261 | 6 | 129 | 507 | 66 | 447 | 1.60e-45 | 166 |
| MS.gene94890.t1 | MTR_2g081960 | 34.862 | 109 | 71 | 0 | 25 | 133 | 32 | 140 | 6.09e-20 | 86.7 |
| MS.gene94890.t1 | MTR_4g081480 | 32.283 | 127 | 79 | 3 | 7 | 129 | 21 | 144 | 3.63e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94890.t1 | AT1G16390 | 48.795 | 498 | 244 | 6 | 15 | 503 | 14 | 509 | 4.62e-175 | 503 |
| MS.gene94890.t1 | AT1G79360 | 47.400 | 500 | 248 | 6 | 23 | 507 | 19 | 518 | 5.26e-171 | 493 |
| MS.gene94890.t1 | AT1G79410 | 42.970 | 505 | 276 | 8 | 7 | 505 | 9 | 507 | 2.17e-137 | 407 |
| MS.gene94890.t1 | AT1G16370 | 42.331 | 489 | 268 | 7 | 25 | 505 | 31 | 513 | 6.82e-137 | 405 |
| MS.gene94890.t1 | AT1G73220 | 35.465 | 516 | 317 | 6 | 2 | 507 | 23 | 532 | 1.45e-104 | 323 |
| MS.gene94890.t1 | AT3G20660 | 29.762 | 504 | 331 | 11 | 4 | 497 | 17 | 507 | 5.06e-71 | 236 |
| MS.gene94890.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 127 | 292 | 3 | 174 | 1.74e-12 | 70.5 |
| MS.gene94890.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 127 | 292 | 53 | 224 | 2.06e-12 | 70.1 |
| MS.gene94890.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 127 | 292 | 53 | 224 | 2.12e-12 | 70.1 |
| MS.gene94890.t1 | AT1G34580 | 24.228 | 421 | 270 | 18 | 120 | 504 | 37 | 444 | 1.22e-11 | 67.4 |
| MS.gene94890.t1 | AT1G34580 | 24.228 | 421 | 270 | 18 | 120 | 504 | 87 | 494 | 2.11e-11 | 66.6 |
| MS.gene94890.t1 | AT1G20840 | 26.415 | 159 | 106 | 2 | 141 | 292 | 68 | 222 | 8.06e-11 | 65.1 |
| MS.gene94890.t1 | AT1G20840 | 26.415 | 159 | 106 | 2 | 141 | 292 | 68 | 222 | 8.06e-11 | 65.1 |
Find 97 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGGAATGGTCTATTT+TGG | 0.169180 | 4.1:-70302638 | MS.gene94890:CDS |
| CGTGGAAATCGGTGTATATT+TGG | 0.206428 | 4.1:-70302937 | MS.gene94890:CDS |
| GAATATTTCTGCTTCACATT+AGG | 0.262371 | 4.1:-70303004 | MS.gene94890:CDS |
| AATATTTCTGCTTCACATTA+GGG | 0.272078 | 4.1:-70303003 | MS.gene94890:CDS |
| TGTTACATTGCTCGGTTTGC+CGG | 0.286045 | 4.1:-70302189 | MS.gene94890:CDS |
| GAAAGGGGTTTAGGAAGATT+TGG | 0.291856 | 4.1:-70303541 | MS.gene94890:CDS |
| CCTCCCAGCAGATATCAAAA+AGG | 0.297351 | 4.1:+70302265 | None:intergenic |
| TTGTGTGGCTACTTATTTCT+TGG | 0.297902 | 4.1:-70302537 | MS.gene94890:CDS |
| GAAGCTATGGCAATGCTTAA+AGG | 0.298486 | 4.1:-70302824 | MS.gene94890:CDS |
| ATGGTTCTTGGTATTGGAAT+TGG | 0.308137 | 4.1:-70302653 | MS.gene94890:CDS |
| TCCCATGACCATGAAGATTT+AGG | 0.314784 | 4.1:+70303367 | None:intergenic |
| TCGTCGATTGCAGAGTTGTT+CGG | 0.319208 | 4.1:-70302710 | MS.gene94890:CDS |
| CCGCAATCTTCGTTCTTCAT+TGG | 0.331379 | 4.1:-70303274 | MS.gene94890:CDS |
| CCTTTAGCTGTTGGAAACTT+AGG | 0.335323 | 4.1:-70302611 | MS.gene94890:CDS |
| GCAAAATTCCTAAATCTTCA+TGG | 0.344934 | 4.1:-70303375 | MS.gene94890:CDS |
| GAAATGATGGAAAGGGGTTT+AGG | 0.347800 | 4.1:-70303550 | MS.gene94890:CDS |
| GCCATCGATTCTTGTATTCT+CGG | 0.352206 | 4.1:-70302498 | MS.gene94890:CDS |
| CGTCGATTGCAGAGTTGTTC+GGG | 0.365612 | 4.1:-70302709 | MS.gene94890:CDS |
| TGTATAATGTGTGTTATTGT+TGG | 0.371116 | 4.1:-70302458 | MS.gene94890:CDS |
| GCGGTAATGGTTCTTGGTAT+TGG | 0.379219 | 4.1:-70302659 | MS.gene94890:CDS |
| TTCTCTCATGGCGGCTATAG+AGG | 0.389503 | 4.1:-70304356 | None:intergenic |
| TCCATCATTTCATCTGTTGA+AGG | 0.402045 | 4.1:+70303562 | None:intergenic |
| CAGAGTTGTTCGGGAGAAGT+TGG | 0.405119 | 4.1:-70302700 | MS.gene94890:CDS |
| TAGATATAATTCGTGGAAAT+CGG | 0.408726 | 4.1:-70302948 | MS.gene94890:CDS |
| ATATACCTCGGAAGAAGCTT+GGG | 0.417250 | 4.1:+70304315 | None:intergenic |
| GATTTGTGCAATGCCATGTT+TGG | 0.422981 | 4.1:+70303428 | None:intergenic |
| ATGATTGAGTAAATAATTGC+AGG | 0.429182 | 4.1:+70302905 | None:intergenic |
| TTTCTTCTCTTGTTGATCCA+TGG | 0.431898 | 4.1:+70302139 | None:intergenic |
| ATGGTGGCGGTAATGGTTCT+TGG | 0.433230 | 4.1:-70302665 | MS.gene94890:CDS |
| AAAGAGAATGGTGGCGGTAA+TGG | 0.434136 | 4.1:-70302672 | MS.gene94890:CDS |
| TTTGGAATGCCTTTAGCTGT+TGG | 0.437641 | 4.1:-70302620 | MS.gene94890:CDS |
| TTCCTAAATCTTCATGGTCA+TGG | 0.439320 | 4.1:-70303369 | MS.gene94890:CDS |
| CCGAGTGGAGGTTCACTGTT+GGG | 0.441877 | 4.1:-70303033 | MS.gene94890:CDS |
| TATATACCTCGGAAGAAGCT+TGG | 0.445381 | 4.1:+70304314 | None:intergenic |
| AACAGATGAAATGATGGAAA+GGG | 0.447149 | 4.1:-70303557 | MS.gene94890:CDS |
| TTGTCTTGTGTTACATTGCT+CGG | 0.450359 | 4.1:-70302197 | MS.gene94890:CDS |
| ATCGGGACAACAAGGAATTA+AGG | 0.453209 | 4.1:-70302435 | MS.gene94890:CDS |
| AGAGTTGTTCGGGAGAAGTT+GGG | 0.457783 | 4.1:-70302699 | MS.gene94890:CDS |
| CAAGAATCGATGGCTTTCTT+CGG | 0.466730 | 4.1:+70302507 | None:intergenic |
| TTTAGCTCTTTCTGATACCA+TGG | 0.469057 | 4.1:-70302156 | MS.gene94890:CDS |
| TATTTGGCTGTTGTGTTCAA+CGG | 0.483478 | 4.1:-70302578 | MS.gene94890:CDS |
| CTGCAATCGACGAGTAAAGT+TGG | 0.485010 | 4.1:+70302720 | None:intergenic |
| ATCTTAATAGATATAATTCG+TGG | 0.492171 | 4.1:-70302955 | MS.gene94890:CDS |
| CTTGCATTAGAAGCCATCTC+GGG | 0.492815 | 4.1:+70302858 | None:intergenic |
| CTCGGAAGAAGCTTGGGGTA+TGG | 0.496504 | 4.1:+70304321 | None:intergenic |
| CCTTGCATTAGAAGCCATCT+CGG | 0.501206 | 4.1:+70302857 | None:intergenic |
| CCTAAGTTTCCAACAGCTAA+AGG | 0.503723 | 4.1:+70302611 | None:intergenic |
| GTAGTGTTTCTCACACTTGT+TGG | 0.504323 | 4.1:+70302335 | None:intergenic |
| ATGTGTGTTATTGTTGGATC+GGG | 0.504656 | 4.1:-70302452 | MS.gene94890:CDS |
| TCCTAAATCTTCATGGTCAT+GGG | 0.507054 | 4.1:-70303368 | MS.gene94890:CDS |
| GAGAAACACTACAACATCAT+TGG | 0.509406 | 4.1:-70302324 | MS.gene94890:CDS |
| TGTTGTGTTCAACGGTTTGA+TGG | 0.510463 | 4.1:-70302570 | MS.gene94890:CDS |
| TCCTTCAACAGATGAAATGA+TGG | 0.510742 | 4.1:-70303563 | MS.gene94890:CDS |
| TTAGGGTATGTGTCATTGCC+TGG | 0.518083 | 4.1:-70302986 | MS.gene94890:CDS |
| GAAGCTTGGGGTATGGAAGA+AGG | 0.522165 | 4.1:+70304328 | None:intergenic |
| GAATCTGATGCACATGTGGT+TGG | 0.527396 | 4.1:+70303406 | None:intergenic |
| TCTTGGTATTGGAATTGGAA+TGG | 0.528385 | 4.1:-70302648 | MS.gene94890:CDS |
| GGGTTTAGGAAGATTTGGTT+GGG | 0.532129 | 4.1:-70303536 | MS.gene94890:CDS |
| GGGGTTTAGGAAGATTTGGT+TGG | 0.533651 | 4.1:-70303537 | MS.gene94890:CDS |
| CTCGGTTTGCCGGAGTCAAG+AGG | 0.535857 | 4.1:-70302179 | MS.gene94890:CDS |
| CTAGAAGAAACGAACCGAAA+AGG | 0.540466 | 4.1:+70303248 | None:intergenic |
| AGCCCCGGTGAATAAACAAA+AGG | 0.542980 | 4.1:-70302753 | MS.gene94890:CDS |
| AATGTGTGTTATTGTTGGAT+CGG | 0.549320 | 4.1:-70302453 | MS.gene94890:CDS |
| CTTGTATTCTCGGTAGCTAG+TGG | 0.549620 | 4.1:-70302488 | MS.gene94890:CDS |
| CAACAGATGAAATGATGGAA+AGG | 0.550084 | 4.1:-70303558 | MS.gene94890:CDS |
| ACAAAACAGTGATATCTCAA+TGG | 0.553373 | 4.1:-70303333 | MS.gene94890:CDS |
| GACAACAAGGAATTAAGGTC+GGG | 0.563112 | 4.1:-70302430 | MS.gene94890:CDS |
| CTATTAAGATAAGCTATACC+AGG | 0.565268 | 4.1:+70302968 | None:intergenic |
| AAGTTGGGCTCTAAAGAGAA+TGG | 0.572157 | 4.1:-70302684 | MS.gene94890:CDS |
| GGCTCTAAAGAGAATGGTGG+CGG | 0.573774 | 4.1:-70302678 | MS.gene94890:CDS |
| AGGACGACATCAAGAAGCTA+TGG | 0.579332 | 4.1:-70302837 | MS.gene94890:CDS |
| ACTTTAGCTGATACTTCACT+TGG | 0.579518 | 4.1:-70303223 | MS.gene94890:CDS |
| AGTAAGTTTAATAGAAGCCC+CGG | 0.581651 | 4.1:-70302768 | MS.gene94890:CDS |
| ACCGAGTGGAGGTTCACTGT+TGG | 0.582904 | 4.1:-70303034 | MS.gene94890:CDS |
| AAATCTTCATGGTCATGGGA+TGG | 0.585898 | 4.1:-70303364 | MS.gene94890:CDS |
| AACAGAATAAATCCAAACAT+TGG | 0.591278 | 4.1:+70303132 | None:intergenic |
| GATGGAAGTACCGTCTTGTG+TGG | 0.593579 | 4.1:-70302552 | MS.gene94890:CDS |
| TTGTTACTGAGTCCCCGAGA+TGG | 0.595109 | 4.1:-70302871 | MS.gene94890:CDS |
| ACAGATGAAATGATGGAAAG+GGG | 0.595316 | 4.1:-70303556 | MS.gene94890:CDS |
| ATCGGTGTATATTTGGACAT+CGG | 0.596172 | 4.1:-70302930 | MS.gene94890:CDS |
| ACCGAGAATACAAGAATCGA+TGG | 0.601771 | 4.1:+70302497 | None:intergenic |
| GGACAACAAGGAATTAAGGT+CGG | 0.602421 | 4.1:-70302431 | MS.gene94890:CDS |
| AGAGCTAAACCTCTTGACTC+CGG | 0.611850 | 4.1:+70302170 | None:intergenic |
| ATTGTTGGATCGGGACAACA+AGG | 0.619158 | 4.1:-70302443 | MS.gene94890:CDS |
| CCGAGATGGCTTCTAATGCA+AGG | 0.623082 | 4.1:-70302857 | MS.gene94890:CDS |
| ATGCCATGTTTGGTATTCGT+CGG | 0.629753 | 4.1:+70303438 | None:intergenic |
| AAATAAGTAGCCACACAAGA+CGG | 0.630270 | 4.1:+70302542 | None:intergenic |
| CATACCCCAAGCTTCTTCCG+AGG | 0.637475 | 4.1:-70304320 | MS.gene94890:intron |
| ACACCGACGAATACCAAACA+TGG | 0.647674 | 4.1:-70303441 | MS.gene94890:CDS |
| CCCAACAGTGAACCTCCACT+CGG | 0.649161 | 4.1:+70303033 | None:intergenic |
| TTGCATTAGAAGCCATCTCG+GGG | 0.669568 | 4.1:+70302859 | None:intergenic |
| CTGAGAAAGTTAGTACCGAG+TGG | 0.671581 | 4.1:-70303048 | MS.gene94890:CDS |
| GTTAGAATCTGATGCACATG+TGG | 0.675405 | 4.1:+70303402 | None:intergenic |
| TATACCTCGGAAGAAGCTTG+GGG | 0.677450 | 4.1:+70304316 | None:intergenic |
| TTGGGCTCTAAAGAGAATGG+TGG | 0.689893 | 4.1:-70302681 | MS.gene94890:CDS |
| AGAAAGTTAGTACCGAGTGG+AGG | 0.706492 | 4.1:-70303045 | MS.gene94890:CDS |
| CCAATGAAGAACGAAGATTG+CGG | 0.713248 | 4.1:+70303274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAGATTAAATATAAATAAAT+AGG | + | chr4.1:70302697-70302716 | None:intergenic | 10.0% |
| !! | CCAAAATAATTATATAAAAT+TGG | - | chr4.1:70302602-70302621 | MS.gene94890:CDS | 10.0% |
| !!! | CCAATTTTATATAATTATTT+TGG | + | chr4.1:70302605-70302624 | None:intergenic | 10.0% |
| !! | TAATTAAGATGATAAAGTAA+CGG | + | chr4.1:70302333-70302352 | None:intergenic | 15.0% |
| !!! | ATTTTAATAGCAATTAGAAA+TGG | - | chr4.1:70302823-70302842 | MS.gene94890:CDS | 15.0% |
| !!! | GGTTTGTTTATATATAATTA+GGG | + | chr4.1:70302357-70302376 | None:intergenic | 15.0% |
| !!! | TGGTTTGTTTATATATAATT+AGG | + | chr4.1:70302358-70302377 | None:intergenic | 15.0% |
| !! | AAAACTAAAAAATTCAATCC+TGG | + | chr4.1:70302660-70302679 | None:intergenic | 20.0% |
| !! | AATAGTAATAACAATAGCAT+AGG | - | chr4.1:70302788-70302807 | MS.gene94890:CDS | 20.0% |
| !! | ATCTTAATAGATATAATTCG+TGG | - | chr4.1:70303515-70303534 | MS.gene94890:CDS | 20.0% |
| !! | GAATTAGAATTAGTTGAAAT+TGG | + | chr4.1:70302866-70302885 | None:intergenic | 20.0% |
| !! | TCACTACTATCAAAATTATT+TGG | - | chr4.1:70302257-70302276 | MS.gene94890:CDS | 20.0% |
| !! | TGCTTTCAATTGAATAATAA+AGG | + | chr4.1:70302763-70302782 | None:intergenic | 20.0% |
| !!! | AAAAATGACATTTTCTCTTA+TGG | - | chr4.1:70304228-70304247 | MS.gene94890:intron | 20.0% |
| !!! | CTGTTTTTAAATTCTTGATT+GGG | - | chr4.1:70303356-70303375 | MS.gene94890:CDS | 20.0% |
| !!! | TCTGTTTTTAAATTCTTGAT+TGG | - | chr4.1:70303355-70303374 | MS.gene94890:CDS | 20.0% |
| ! | AACAGAATAAATCCAAACAT+TGG | + | chr4.1:70303341-70303360 | None:intergenic | 25.0% |
| ! | ATCAAAGTCAAACAAAAACT+TGG | + | chr4.1:70302498-70302517 | None:intergenic | 25.0% |
| ! | ATGATTGAGTAAATAATTGC+AGG | + | chr4.1:70303568-70303587 | None:intergenic | 25.0% |
| ! | CAATTGAATAATAAAGGCAA+AGG | + | chr4.1:70302757-70302776 | None:intergenic | 25.0% |
| ! | GTTTATGTTTGTATATACCT+CGG | + | chr4.1:70302170-70302189 | None:intergenic | 25.0% |
| ! | TAATTCTAATTCTATTGAGC+AGG | - | chr4.1:70302874-70302893 | MS.gene94890:CDS | 25.0% |
| ! | TAGATATAATTCGTGGAAAT+CGG | - | chr4.1:70303522-70303541 | MS.gene94890:CDS | 25.0% |
| !! | AATATTTCTGCTTCACATTA+GGG | - | chr4.1:70303467-70303486 | MS.gene94890:CDS | 25.0% |
| !! | TGTATAATGTGTGTTATTGT+TGG | - | chr4.1:70304012-70304031 | MS.gene94890:intron | 25.0% |
| !!! | CTTAGGTTTTGACATTTATT+TGG | - | chr4.1:70303876-70303895 | MS.gene94890:intron | 25.0% |
| ACAAAACAGTGATATCTCAA+TGG | - | chr4.1:70303137-70303156 | MS.gene94890:CDS | 30.0% | |
| ATAAACAAACCAAAAGTCCT+TGG | - | chr4.1:70302366-70302385 | MS.gene94890:CDS | 30.0% | |
| ATAGCAATTAGAAATGGCAT+TGG | - | chr4.1:70302829-70302848 | MS.gene94890:CDS | 30.0% | |
| CTATTAAGATAAGCTATACC+AGG | + | chr4.1:70303505-70303524 | None:intergenic | 30.0% | |
| GCAAAATTCCTAAATCTTCA+TGG | - | chr4.1:70303095-70303114 | MS.gene94890:CDS | 30.0% | |
| TAATAAAATGCAACTAGCCA+AGG | + | chr4.1:70302386-70302405 | None:intergenic | 30.0% | |
| ! | AACAGATGAAATGATGGAAA+GGG | - | chr4.1:70302913-70302932 | MS.gene94890:CDS | 30.0% |
| ! | AATGTGTGTTATTGTTGGAT+CGG | - | chr4.1:70304017-70304036 | MS.gene94890:intron | 30.0% |
| ! | GAATATTTCTGCTTCACATT+AGG | - | chr4.1:70303466-70303485 | MS.gene94890:CDS | 30.0% |
| ! | TTGTTTTCTCTACCAATGTT+TGG | - | chr4.1:70303326-70303345 | MS.gene94890:CDS | 30.0% |
| AAATAAGTAGCCACACAAGA+CGG | + | chr4.1:70303931-70303950 | None:intergenic | 35.0% | |
| ACTTTAGCTGATACTTCACT+TGG | - | chr4.1:70303247-70303266 | MS.gene94890:CDS | 35.0% | |
| AGTAAGTTTAATAGAAGCCC+CGG | - | chr4.1:70303702-70303721 | MS.gene94890:intron | 35.0% | |
| ATCGGTGTATATTTGGACAT+CGG | - | chr4.1:70303540-70303559 | MS.gene94890:CDS | 35.0% | |
| GAGAAACACTACAACATCAT+TGG | - | chr4.1:70304146-70304165 | MS.gene94890:intron | 35.0% | |
| TATTTGGCTGTTGTGTTCAA+CGG | - | chr4.1:70303892-70303911 | MS.gene94890:intron | 35.0% | |
| TCCATCATTTCATCTGTTGA+AGG | + | chr4.1:70302911-70302930 | None:intergenic | 35.0% | |
| TCCTAAATCTTCATGGTCAT+GGG | - | chr4.1:70303102-70303121 | MS.gene94890:CDS | 35.0% | |
| TCCTTCAACAGATGAAATGA+TGG | - | chr4.1:70302907-70302926 | MS.gene94890:CDS | 35.0% | |
| TTCCTAAATCTTCATGGTCA+TGG | - | chr4.1:70303101-70303120 | MS.gene94890:CDS | 35.0% | |
| TTGTCTTGTGTTACATTGCT+CGG | - | chr4.1:70304273-70304292 | MS.gene94890:intron | 35.0% | |
| TTTCTTCTCTTGTTGATCCA+TGG | + | chr4.1:70304334-70304353 | None:intergenic | 35.0% | |
| ! | ACAGATGAAATGATGGAAAG+GGG | - | chr4.1:70302914-70302933 | MS.gene94890:CDS | 35.0% |
| ! | ATGGTTCTTGGTATTGGAAT+TGG | - | chr4.1:70303817-70303836 | MS.gene94890:intron | 35.0% |
| ! | ATGTGTGTTATTGTTGGATC+GGG | - | chr4.1:70304018-70304037 | MS.gene94890:intron | 35.0% |
| ! | ATTTTCTCTTATGGCGTGTT+TGG | - | chr4.1:70304237-70304256 | MS.gene94890:intron | 35.0% |
| ! | CAACAGATGAAATGATGGAA+AGG | - | chr4.1:70302912-70302931 | MS.gene94890:CDS | 35.0% |
| ! | GGAATTGGAATGGTCTATTT+TGG | - | chr4.1:70303832-70303851 | MS.gene94890:intron | 35.0% |
| ! | GTGAGACAAGCTATTGTTTT+TGG | - | chr4.1:70304168-70304187 | MS.gene94890:intron | 35.0% |
| ! | TCTTGGTATTGGAATTGGAA+TGG | - | chr4.1:70303822-70303841 | MS.gene94890:intron | 35.0% |
| ! | TTGTGTGGCTACTTATTTCT+TGG | - | chr4.1:70303933-70303952 | MS.gene94890:intron | 35.0% |
| !! | AAGCCTTTTGTTTATTCACC+GGG | + | chr4.1:70303723-70303742 | None:intergenic | 35.0% |
| !! | GAAGCCTTTTGTTTATTCAC+CGG | + | chr4.1:70303724-70303743 | None:intergenic | 35.0% |
| !! | TTCTTCATTGGTTGCCTTTT+CGG | - | chr4.1:70303208-70303227 | MS.gene94890:CDS | 35.0% |
| !! | TTTAGCTCTTTCTGATACCA+TGG | - | chr4.1:70304314-70304333 | MS.gene94890:intron | 35.0% |
| !!! | TGTGCTAGTAGTTTTGTAAC+AGG | - | chr4.1:70303169-70303188 | MS.gene94890:CDS | 35.0% |
| AAATCTTCATGGTCATGGGA+TGG | - | chr4.1:70303106-70303125 | MS.gene94890:CDS | 40.0% | |
| AATAACAACGTGCACAAGCA+TGG | + | chr4.1:70302564-70302583 | None:intergenic | 40.0% | |
| ACCGAGAATACAAGAATCGA+TGG | + | chr4.1:70303976-70303995 | None:intergenic | 40.0% | |
| ATATACCTCGGAAGAAGCTT+GGG | + | chr4.1:70302158-70302177 | None:intergenic | 40.0% | |
| ATCGGGACAACAAGGAATTA+AGG | - | chr4.1:70304035-70304054 | MS.gene94890:intron | 40.0% | |
| ATGCCATGTTTGGTATTCGT+CGG | + | chr4.1:70303035-70303054 | None:intergenic | 40.0% | |
| CAAGAATCGATGGCTTTCTT+CGG | + | chr4.1:70303966-70303985 | None:intergenic | 40.0% | |
| CCAATGAAGAACGAAGATTG+CGG | + | chr4.1:70303199-70303218 | None:intergenic | 40.0% | |
| CCTAAGTTTCCAACAGCTAA+AGG | + | chr4.1:70303862-70303881 | None:intergenic | 40.0% | |
| CCTTTAGCTGTTGGAAACTT+AGG | - | chr4.1:70303859-70303878 | MS.gene94890:intron | 40.0% | |
| CGTGGAAATCGGTGTATATT+TGG | - | chr4.1:70303533-70303552 | MS.gene94890:CDS | 40.0% | |
| CTAGAAGAAACGAACCGAAA+AGG | + | chr4.1:70303225-70303244 | None:intergenic | 40.0% | |
| CTCCCAGCAGATATCAAAAA+GGG | + | chr4.1:70304207-70304226 | None:intergenic | 40.0% | |
| GAAAGGGGTTTAGGAAGATT+TGG | - | chr4.1:70302929-70302948 | MS.gene94890:CDS | 40.0% | |
| GAAGCTATGGCAATGCTTAA+AGG | - | chr4.1:70303646-70303665 | MS.gene94890:intron | 40.0% | |
| GACAACAAGGAATTAAGGTC+GGG | - | chr4.1:70304040-70304059 | MS.gene94890:intron | 40.0% | |
| GATTTGTGCAATGCCATGTT+TGG | + | chr4.1:70303045-70303064 | None:intergenic | 40.0% | |
| GGACAACAAGGAATTAAGGT+CGG | - | chr4.1:70304039-70304058 | MS.gene94890:intron | 40.0% | |
| GTAGTGTTTCTCACACTTGT+TGG | + | chr4.1:70304138-70304157 | None:intergenic | 40.0% | |
| GTTAGAATCTGATGCACATG+TGG | + | chr4.1:70303071-70303090 | None:intergenic | 40.0% | |
| TATATACCTCGGAAGAAGCT+TGG | + | chr4.1:70302159-70302178 | None:intergenic | 40.0% | |
| TCCCAGCAGATATCAAAAAG+GGG | + | chr4.1:70304206-70304225 | None:intergenic | 40.0% | |
| TCCCATGACCATGAAGATTT+AGG | + | chr4.1:70303106-70303125 | None:intergenic | 40.0% | |
| TGTTGTGTTCAACGGTTTGA+TGG | - | chr4.1:70303900-70303919 | MS.gene94890:intron | 40.0% | |
| TTCAATCCTGGCAACTACTA+TGG | + | chr4.1:70302648-70302667 | None:intergenic | 40.0% | |
| ! | AGCACTGAAAAACGATGTCA+TGG | + | chr4.1:70304070-70304089 | None:intergenic | 40.0% |
| ! | GAAATGATGGAAAGGGGTTT+AGG | - | chr4.1:70302920-70302939 | MS.gene94890:CDS | 40.0% |
| ! | GATATCACTGTTTTGTGTGC+TGG | + | chr4.1:70303133-70303152 | None:intergenic | 40.0% |
| ! | GGGTTTAGGAAGATTTGGTT+GGG | - | chr4.1:70302934-70302953 | MS.gene94890:CDS | 40.0% |
| ! | TTTGGAATGCCTTTAGCTGT+TGG | - | chr4.1:70303850-70303869 | MS.gene94890:intron | 40.0% |
| !! | AAGTTGGGCTCTAAAGAGAA+TGG | - | chr4.1:70303786-70303805 | MS.gene94890:intron | 40.0% |
| !! | AGCCTTTTGTTTATTCACCG+GGG | + | chr4.1:70303722-70303741 | None:intergenic | 40.0% |
| !! | GCCATCGATTCTTGTATTCT+CGG | - | chr4.1:70303972-70303991 | MS.gene94890:intron | 40.0% |
| ACACCGACGAATACCAAACA+TGG | - | chr4.1:70303029-70303048 | MS.gene94890:CDS | 45.0% | |
| AGAGCTAAACCTCTTGACTC+CGG | + | chr4.1:70304303-70304322 | None:intergenic | 45.0% | |
| AGAGTTGTTCGGGAGAAGTT+GGG | - | chr4.1:70303771-70303790 | MS.gene94890:intron | 45.0% | |
| AGCCCCGGTGAATAAACAAA+AGG | - | chr4.1:70303717-70303736 | MS.gene94890:intron | 45.0% | |
| AGGACGACATCAAGAAGCTA+TGG | - | chr4.1:70303633-70303652 | MS.gene94890:intron | 45.0% | |
| ATTGTTGGATCGGGACAACA+AGG | - | chr4.1:70304027-70304046 | MS.gene94890:intron | 45.0% | |
| CCGCAATCTTCGTTCTTCAT+TGG | - | chr4.1:70303196-70303215 | MS.gene94890:CDS | 45.0% | |
| CCTCCCAGCAGATATCAAAA+AGG | + | chr4.1:70304208-70304227 | None:intergenic | 45.0% | |
| CCTTGCATTAGAAGCCATCT+CGG | + | chr4.1:70303616-70303635 | None:intergenic | 45.0% | |
| CTGCAATCGACGAGTAAAGT+TGG | + | chr4.1:70303753-70303772 | None:intergenic | 45.0% | |
| CTTGCATTAGAAGCCATCTC+GGG | + | chr4.1:70303615-70303634 | None:intergenic | 45.0% | |
| CTTGTATTCTCGGTAGCTAG+TGG | - | chr4.1:70303982-70304001 | MS.gene94890:intron | 45.0% | |
| GAATCTGATGCACATGTGGT+TGG | + | chr4.1:70303067-70303086 | None:intergenic | 45.0% | |
| TATACCTCGGAAGAAGCTTG+GGG | + | chr4.1:70302157-70302176 | None:intergenic | 45.0% | |
| TCAATGCCATAGTAGTTGCC+AGG | - | chr4.1:70302639-70302658 | MS.gene94890:CDS | 45.0% | |
| TTGCATTAGAAGCCATCTCG+GGG | + | chr4.1:70303614-70303633 | None:intergenic | 45.0% | |
| ! | AGAAAGTTAGTACCGAGTGG+AGG | - | chr4.1:70303425-70303444 | MS.gene94890:CDS | 45.0% |
| ! | AGCCCCTTTTTGATATCTGC+TGG | - | chr4.1:70304201-70304220 | MS.gene94890:intron | 45.0% |
| ! | CCTTTTTGATATCTGCTGGG+AGG | - | chr4.1:70304205-70304224 | MS.gene94890:intron | 45.0% |
| ! | CTGAGAAAGTTAGTACCGAG+TGG | - | chr4.1:70303422-70303441 | MS.gene94890:CDS | 45.0% |
| ! | GCCCCTTTTTGATATCTGCT+GGG | - | chr4.1:70304202-70304221 | MS.gene94890:intron | 45.0% |
| ! | GCGGTAATGGTTCTTGGTAT+TGG | - | chr4.1:70303811-70303830 | MS.gene94890:intron | 45.0% |
| ! | GGGGTTTAGGAAGATTTGGT+TGG | - | chr4.1:70302933-70302952 | MS.gene94890:CDS | 45.0% |
| ! | GGGTTTTTGCGTTCATCGAT+TGG | - | chr4.1:70303376-70303395 | MS.gene94890:CDS | 45.0% |
| ! | TCGTCGATTGCAGAGTTGTT+CGG | - | chr4.1:70303760-70303779 | MS.gene94890:intron | 45.0% |
| ! | TGCAACTAGCCAAGGACTTT+TGG | + | chr4.1:70302378-70302397 | None:intergenic | 45.0% |
| ! | TGTTACATTGCTCGGTTTGC+CGG | - | chr4.1:70304281-70304300 | MS.gene94890:intron | 45.0% |
| ! | TTAGGGTATGTGTCATTGCC+TGG | - | chr4.1:70303484-70303503 | MS.gene94890:CDS | 45.0% |
| !! | AAAGAGAATGGTGGCGGTAA+TGG | - | chr4.1:70303798-70303817 | MS.gene94890:intron | 45.0% |
| !! | TTGGGCTCTAAAGAGAATGG+TGG | - | chr4.1:70303789-70303808 | MS.gene94890:intron | 45.0% |
| !! | AGATTAAATATAAATAAATA+GGG | + | chr4.1:70302696-70302715 | None:intergenic | 5.0% |
| CAGAGTTGTTCGGGAGAAGT+TGG | - | chr4.1:70303770-70303789 | MS.gene94890:intron | 50.0% | |
| CCGAGATGGCTTCTAATGCA+AGG | - | chr4.1:70303613-70303632 | MS.gene94890:intron | 50.0% | |
| GAAGCTTGGGGTATGGAAGA+AGG | + | chr4.1:70302145-70302164 | None:intergenic | 50.0% | |
| TTGTTACTGAGTCCCCGAGA+TGG | - | chr4.1:70303599-70303618 | MS.gene94890:intron | 50.0% | |
| ! | CGTCGATTGCAGAGTTGTTC+GGG | - | chr4.1:70303761-70303780 | MS.gene94890:intron | 50.0% |
| !! | ATGGTGGCGGTAATGGTTCT+TGG | - | chr4.1:70303805-70303824 | MS.gene94890:intron | 50.0% |
| !! | GATGGAAGTACCGTCTTGTG+TGG | - | chr4.1:70303918-70303937 | MS.gene94890:intron | 50.0% |
| !! | GGCTCTAAAGAGAATGGTGG+CGG | - | chr4.1:70303792-70303811 | MS.gene94890:intron | 50.0% |
| ACCGAGTGGAGGTTCACTGT+TGG | - | chr4.1:70303436-70303455 | MS.gene94890:CDS | 55.0% | |
| CATACCCCAAGCTTCTTCCG+AGG | - | chr4.1:70302150-70302169 | MS.gene94890:CDS | 55.0% | |
| CCCAACAGTGAACCTCCACT+CGG | + | chr4.1:70303440-70303459 | None:intergenic | 55.0% | |
| CCGAGTGGAGGTTCACTGTT+GGG | - | chr4.1:70303437-70303456 | MS.gene94890:CDS | 55.0% | |
| CTCGGAAGAAGCTTGGGGTA+TGG | + | chr4.1:70302152-70302171 | None:intergenic | 55.0% | |
| ! | CTCGGTTTGCCGGAGTCAAG+AGG | - | chr4.1:70304291-70304310 | MS.gene94890:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 70302121 | 70304371 | 70302121 | ID=MS.gene94890 |
| chr4.1 | mRNA | 70302121 | 70304371 | 70302121 | ID=MS.gene94890.t1;Parent=MS.gene94890 |
| chr4.1 | exon | 70304321 | 70304371 | 70304321 | ID=MS.gene94890.t1.exon1;Parent=MS.gene94890.t1 |
| chr4.1 | CDS | 70304321 | 70304371 | 70304321 | ID=cds.MS.gene94890.t1;Parent=MS.gene94890.t1 |
| chr4.1 | exon | 70302121 | 70303596 | 70302121 | ID=MS.gene94890.t1.exon2;Parent=MS.gene94890.t1 |
| chr4.1 | CDS | 70302121 | 70303596 | 70302121 | ID=cds.MS.gene94890.t1;Parent=MS.gene94890.t1 |
| Gene Sequence |
| Protein sequence |
