AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95287


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95287.t1 MTR_8g027860 58.621 348 21 7 1 225 1 348 3.35e-124 355
MS.gene95287.t1 MTR_7g117200 58.268 127 46 3 12 136 45 166 4.48e-42 145
MS.gene95287.t1 MTR_3g090860 62.766 94 33 2 46 137 89 182 6.11e-37 132
MS.gene95287.t1 MTR_8g099350 47.059 136 62 3 12 137 46 181 1.70e-33 124
MS.gene95287.t1 MTR_7g073380 50.667 75 29 1 63 137 106 172 2.43e-19 84.7
MS.gene95287.t1 MTR_7g073430 48.649 74 30 1 63 136 105 170 1.16e-16 77.0
MS.gene95287.t1 MTR_7g109600 47.917 96 43 4 43 133 3 96 1.44e-16 76.6
MS.gene95287.t1 MTR_3g093830 52.632 57 27 0 81 137 120 176 1.09e-15 74.7
MS.gene95287.t1 MTR_8g005750 37.838 111 54 2 62 164 84 187 3.24e-15 73.2
MS.gene95287.t1 MTR_5g067680 52.239 67 32 0 70 136 184 250 3.68e-15 73.6
MS.gene95287.t1 MTR_5g067700 56.250 48 21 0 81 128 99 146 2.91e-14 69.7
MS.gene95287.t1 MTR_1g009613 39.175 97 53 3 60 153 235 328 1.14e-13 69.3
MS.gene95287.t1 MTR_0002s1250 34.351 131 69 5 63 193 94 207 1.45e-13 68.2
MS.gene95287.t1 MTR_7g028415 58.000 50 18 1 87 136 92 138 1.79e-13 66.6
MS.gene95287.t1 MTR_7g028710 58.000 50 18 1 87 136 92 138 1.79e-13 66.6
MS.gene95287.t1 MTR_4g127040 38.947 95 54 3 58 151 216 307 2.28e-13 68.2
MS.gene95287.t1 MTR_8g098945 49.123 57 27 1 81 137 122 176 2.69e-13 67.8
MS.gene95287.t1 MTR_2g075750 50.980 51 25 0 87 137 27 77 3.50e-13 65.9
MS.gene95287.t1 MTR_2g075680 41.463 82 39 2 57 137 124 197 3.51e-13 67.8
MS.gene95287.t1 MTR_2g075700 38.961 77 38 2 62 137 125 193 5.28e-13 67.4
MS.gene95287.t1 MTR_2g075610 52.000 50 24 0 88 137 29 78 5.65e-13 65.5
MS.gene95287.t1 MTR_7g079040 37.778 90 54 1 48 137 114 201 6.65e-13 67.0
MS.gene95287.t1 MTR_7g079010 30.233 129 78 3 12 136 66 186 8.62e-13 65.5
MS.gene95287.t1 MTR_5g016610 39.394 99 55 3 60 156 172 267 9.31e-13 66.2
MS.gene95287.t1 MTR_2g075690 29.054 148 83 4 32 166 94 232 1.23e-12 66.2
MS.gene95287.t1 MTR_8g087000 29.747 158 94 6 63 209 45 196 9.65e-12 62.8
MS.gene95287.t1 MTR_8g096730 48.000 50 23 1 87 136 69 115 1.79e-11 60.5
MS.gene95287.t1 MTR_8g028565 37.363 91 55 1 47 137 114 202 1.87e-11 62.8
MS.gene95287.t1 MTR_3g009470 32.331 133 77 5 14 136 196 325 3.06e-11 62.8
MS.gene95287.t1 MTR_4g082580 51.020 49 21 1 88 136 145 190 3.57e-11 62.4
MS.gene95287.t1 MTR_2g083870 37.647 85 43 3 52 133 46 123 4.06e-11 61.2
MS.gene95287.t1 MTR_7g080020 31.148 122 64 4 30 143 226 335 4.45e-11 62.4
MS.gene95287.t1 MTR_1g099600 41.667 72 35 2 62 133 164 228 4.56e-11 61.6
MS.gene95287.t1 MTR_5g043880 42.222 90 47 3 48 136 84 169 4.67e-11 61.2
MS.gene95287.t1 MTR_3g009470 32.331 133 77 5 14 136 196 325 5.10e-11 62.0
MS.gene95287.t1 MTR_8g087000 31.746 126 75 4 89 209 78 197 6.90e-11 60.5
MS.gene95287.t1 MTR_5g091390 50.000 50 22 1 87 136 156 202 8.34e-11 60.8
MS.gene95287.t1 MTR_2g016770 36.000 75 46 1 62 136 9 81 8.50e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95287.t1 AT5G24110 55.435 92 39 1 45 136 72 161 2.73e-32 119
MS.gene95287.t1 AT4G23810 43.796 137 60 4 10 137 79 207 8.37e-31 115
MS.gene95287.t1 AT4G11070 57.732 97 35 2 45 137 64 158 5.70e-30 112
MS.gene95287.t1 AT4G11070 57.732 97 35 2 45 137 96 190 8.09e-30 113
MS.gene95287.t1 AT2G46400 61.250 80 30 1 59 137 74 153 1.64e-26 103
MS.gene95287.t1 AT3G56400 42.000 100 55 1 39 138 74 170 1.33e-18 82.8
MS.gene95287.t1 AT2G40750 48.750 80 36 1 63 137 122 201 1.45e-18 83.2
MS.gene95287.t1 AT5G45260 41.509 106 51 2 28 133 1159 1253 1.96e-16 78.2
MS.gene95287.t1 AT2G40740 54.000 50 23 0 88 137 173 222 1.11e-14 72.0
MS.gene95287.t1 AT2G40740 54.000 50 23 0 88 137 182 231 1.15e-14 72.0
MS.gene95287.t1 AT4G24240 34.328 134 71 6 25 154 229 349 7.98e-14 70.1
MS.gene95287.t1 AT3G58710 40.566 106 52 5 49 146 27 129 3.60e-13 67.4
MS.gene95287.t1 AT2G23320 34.746 118 64 4 29 144 190 296 4.57e-13 67.4
MS.gene95287.t1 AT3G58710 38.679 106 55 4 49 146 27 130 5.67e-13 66.6
MS.gene95287.t1 AT2G30590 39.785 93 50 3 60 149 286 375 1.42e-12 66.2
MS.gene95287.t1 AT4G01250 44.737 76 34 2 62 137 108 175 2.07e-12 65.5
MS.gene95287.t1 AT5G52830 40.909 88 36 3 62 149 144 215 5.70e-12 64.7
MS.gene95287.t1 AT5G28650 42.045 88 45 3 60 144 235 319 7.79e-12 63.9
MS.gene95287.t1 AT1G29280 35.238 105 57 3 32 136 27 120 9.91e-12 63.2
MS.gene95287.t1 AT4G23550 37.500 80 48 1 54 133 106 183 1.04e-11 63.5
MS.gene95287.t1 AT3G04670 46.154 78 38 3 60 136 235 309 1.13e-11 63.5
MS.gene95287.t1 AT2G34830 38.393 112 55 4 34 133 149 258 1.44e-11 63.5
MS.gene95287.t1 AT2G34830 38.393 112 55 4 34 133 158 267 1.53e-11 63.5
MS.gene95287.t1 AT4G31550 33.913 115 72 3 50 163 209 320 2.27e-11 62.8
MS.gene95287.t1 AT2G37260 40.789 76 41 2 62 137 324 395 2.66e-11 62.8
MS.gene95287.t1 AT2G37260 39.189 74 42 1 64 137 243 313 2.82e-11 62.4
MS.gene95287.t1 AT1G69310 35.955 89 49 2 48 136 112 192 2.88e-11 62.0
MS.gene95287.t1 AT1G69310 35.955 89 49 2 48 136 112 192 2.88e-11 62.0
MS.gene95287.t1 AT1G69310 35.955 89 49 2 48 136 112 192 2.88e-11 62.0
MS.gene95287.t1 AT2G37260 39.189 74 42 1 64 137 245 315 2.94e-11 62.4
MS.gene95287.t1 AT4G31550 36.275 102 61 3 63 163 221 319 5.14e-11 61.6
MS.gene95287.t1 AT4G18170 41.772 79 42 2 59 136 142 217 5.16e-11 61.6
MS.gene95287.t1 AT4G01720 38.235 102 58 3 45 144 195 293 5.17e-11 62.0
MS.gene95287.t1 AT2G24570 33.962 106 66 3 60 164 216 318 7.16e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGAATTGGCAATAGAATT+TGG 0.147921 8.1:+74027773 None:intergenic
CTGCTTGTCACTATTGGATA+TGG 0.238656 8.1:-74027840 MS.gene95287:CDS
TGAGTCTTGGACCTCACTTT+TGG 0.250506 8.1:+74030613 None:intergenic
ATCAAAATCCATTGGGGAAT+TGG 0.278398 8.1:+74027760 None:intergenic
CATGATTGAAAATAATTTCA+TGG 0.317861 8.1:-74027903 MS.gene95287:CDS
GAGCAAGTGAAGGTTTATTC+TGG 0.340277 8.1:-74029926 MS.gene95287:CDS
AACATTAAGTGTGAAGAAAT+TGG 0.349506 8.1:-74030896 MS.gene95287:CDS
AGTGAGACTGAGATAATTTC+AGG 0.355518 8.1:-74027797 MS.gene95287:CDS
GGGAATTGGCAATAGAATTT+GGG 0.359861 8.1:+74027774 None:intergenic
TATGGACAAAAGGATATTCT+TGG 0.372931 8.1:-74029857 MS.gene95287:CDS
GGTTATAGCTGGAGAAAGTA+TGG 0.376671 8.1:-74029875 MS.gene95287:CDS
ATGAATTCTCATTGTTCAAA+TGG 0.381161 8.1:-74030641 MS.gene95287:CDS
TGTGCTTGAACTTTGAGTCT+TGG 0.395293 8.1:+74030600 None:intergenic
TATAGAGATCAAAATCCATT+GGG 0.432731 8.1:+74027753 None:intergenic
CTGGAGAAAGTATGGACAAA+AGG 0.452781 8.1:-74029867 MS.gene95287:CDS
AAATAATTTCATGGAAAATG+AGG 0.454119 8.1:-74027894 MS.gene95287:CDS
TCCCTCATTACCCTTTGCCA+TGG 0.480628 8.1:+74030691 None:intergenic
TGTGAAGAAATTGGTCTCAT+TGG 0.485916 8.1:-74030887 MS.gene95287:CDS
AACCATGGCAAAGGGTAATG+AGG 0.498135 8.1:-74030693 MS.gene95287:CDS
GAAATTATCTCAGTCTCACT+TGG 0.500825 8.1:+74027800 None:intergenic
ACAAACATGTGTCCAAGAAA+AGG 0.507877 8.1:-74030580 MS.gene95287:intron
CTGTTGAGGATGGTTATAGC+TGG 0.522098 8.1:-74029886 MS.gene95287:CDS
TTCTTGGAGCTAAGTTTCCA+AGG 0.535081 8.1:-74029841 MS.gene95287:intron
TTCTATTGCCAATTCCCCAA+TGG 0.537538 8.1:-74027768 MS.gene95287:CDS
TTATAGAGATCAAAATCCAT+TGG 0.559577 8.1:+74027752 None:intergenic
TTCACTTGCTCTGTCCACTT+AGG 0.560248 8.1:+74029938 None:intergenic
GATATGGACAGCACTGGACT+AGG 0.571491 8.1:-74027824 MS.gene95287:CDS
GACAGCAATAACCATGGCAA+AGG 0.573478 8.1:-74030702 MS.gene95287:intron
ACAGCAATAACCATGGCAAA+GGG 0.573968 8.1:-74030701 MS.gene95287:intron
TATTCTGGAACAGCAGCTGA+AGG 0.574098 8.1:-74029911 MS.gene95287:CDS
ACCATGGCAAAGGGTAATGA+GGG 0.583479 8.1:-74030692 MS.gene95287:CDS
TTGCTCTGTCCACTTAGGCA+CGG 0.602998 8.1:+74029943 None:intergenic
GCTGAAGGATCTGTTGAGGA+TGG 0.616817 8.1:-74029896 MS.gene95287:CDS
CTATTGGATATGGACAGCAC+TGG 0.619978 8.1:-74027830 MS.gene95287:CDS
AGCAGCTGAAGGATCTGTTG+AGG 0.621900 8.1:-74029900 MS.gene95287:CDS
AAATTATCTCAGTCTCACTT+GGG 0.640870 8.1:+74027801 None:intergenic
AAATGGAAGTCCCAAAAGTG+AGG 0.645726 8.1:-74030624 MS.gene95287:CDS
TAATGACATAAATTTCGACA+TGG 0.657601 8.1:-74027732 MS.gene95287:CDS
TAAGTGGACAGAGCAAGTGA+AGG 0.673359 8.1:-74029936 MS.gene95287:CDS
CTCATTGGTGAACTAATGCA+AGG 0.698867 8.1:-74030872 MS.gene95287:intron
CATTGAGACAGCAATAACCA+TGG 0.699108 8.1:-74030708 MS.gene95287:intron
ATAGAGATCAAAATCCATTG+GGG 0.717113 8.1:+74027754 None:intergenic
TGCACACATAGACATGCACA+AGG 0.724252 8.1:-74028226 MS.gene95287:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATATTAAAATTTTTTG+TGG + chr8.1:74030229-74030248 None:intergenic 10.0%
!!! TAGGTTTTTATTTATTATAT+AGG - chr8.1:74029110-74029129 MS.gene95287:intron 10.0%
!! AAAAATCCTATATCAAATAA+TGG - chr8.1:74029234-74029253 MS.gene95287:intron 15.0%
!! AAAATCCTATATCAAATAAT+GGG - chr8.1:74029235-74029254 MS.gene95287:intron 15.0%
!! ATTGTCTGAATTTATATTAA+TGG + chr8.1:74029754-74029773 None:intergenic 15.0%
!!! AAGTTTTATTTGTTCTATTT+AGG - chr8.1:74029091-74029110 MS.gene95287:intron 15.0%
!!! ATTAGAAAGATTTTTAATTC+TGG - chr8.1:74029308-74029327 MS.gene95287:intron 15.0%
!! AAAAAAGGAGAATTGATAAA+GGG - chr8.1:74028373-74028392 MS.gene95287:intron 20.0%
!! AAAATTCCAAAGAATAATGA+AGG + chr8.1:74028622-74028641 None:intergenic 20.0%
!! AAATAATTTCATGGAAAATG+AGG - chr8.1:74030705-74030724 MS.gene95287:intron 20.0%
!! AAATTCCAAAGAATAATGAA+GGG + chr8.1:74028621-74028640 None:intergenic 20.0%
!! AATATAAATTCAGACAATCA+TGG - chr8.1:74029756-74029775 MS.gene95287:intron 20.0%
!! AATCTGACAATTTAAACTAA+TGG + chr8.1:74029784-74029803 None:intergenic 20.0%
!! ATAGAAACTTTAGATTTCAA+TGG - chr8.1:74029946-74029965 MS.gene95287:CDS 20.0%
!! ATATCATTACTCACTTAAAT+TGG + chr8.1:74029452-74029471 None:intergenic 20.0%
!! CATGATTGAAAATAATTTCA+TGG - chr8.1:74030696-74030715 MS.gene95287:CDS 20.0%
!! TAAAAAAGGAGAATTGATAA+AGG - chr8.1:74028372-74028391 MS.gene95287:intron 20.0%
!! TAAAGGAGAATTGATAAAAA+AGG - chr8.1:74028358-74028377 MS.gene95287:intron 20.0%
!!! AAAGAGAATTTTTTTTCTTG+AGG + chr8.1:74030586-74030605 None:intergenic 20.0%
!!! AAGAGTTTTGTTATTCATTA+TGG - chr8.1:74028874-74028893 MS.gene95287:intron 20.0%
!!! AATTTAATTACTTTTGCTTG+AGG - chr8.1:74028967-74028986 MS.gene95287:intron 20.0%
!!! ATATAGGAATTGTTTTTGAT+TGG - chr8.1:74029126-74029145 MS.gene95287:intron 20.0%
!!! CATGAAATTATTTTCAATCA+TGG + chr8.1:74030698-74030717 None:intergenic 20.0%
!!! GTAATTTTGTCAAATTTACT+AGG + chr8.1:74028851-74028870 None:intergenic 20.0%
!!! TAAACAAACTGATTTATGTT+TGG - chr8.1:74028282-74028301 MS.gene95287:intron 20.0%
!!! TTCAAGGTTCATTTTTTTAT+AGG - chr8.1:74028096-74028115 MS.gene95287:intron 20.0%
!!! TTTAGTCATTATTGGTTAAT+TGG + chr8.1:74029194-74029213 None:intergenic 20.0%
! AACATTAAGTGTGAAGAAAT+TGG - chr8.1:74027703-74027722 MS.gene95287:CDS 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr8.1:74029509-74029528 None:intergenic 25.0%
! AATTATGGAACATATCAAGT+AGG + chr8.1:74030053-74030072 None:intergenic 25.0%
! ACCAATAATGACTAAAAAAG+AGG - chr8.1:74029198-74029217 MS.gene95287:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG - chr8.1:74028341-74028360 MS.gene95287:intron 25.0%
! AGGAATTTAAAGATGCATTA+TGG + chr8.1:74028831-74028850 None:intergenic 25.0%
! ATGAATTCTCATTGTTCAAA+TGG - chr8.1:74027958-74027977 MS.gene95287:intron 25.0%
! ATTATGGAACATATCAAGTA+GGG + chr8.1:74030052-74030071 None:intergenic 25.0%
! CAAAATAACCTTAGATTCTA+TGG + chr8.1:74030271-74030290 None:intergenic 25.0%
! CCAATAATGACTAAAAAAGA+GGG - chr8.1:74029199-74029218 MS.gene95287:intron 25.0%
! GTAAAAAATGATTGTTACCT+TGG + chr8.1:74028778-74028797 None:intergenic 25.0%
! GTGAATCACAAATTTAATTC+AGG + chr8.1:74029921-74029940 None:intergenic 25.0%
! TAATGACATAAATTTCGACA+TGG - chr8.1:74030867-74030886 MS.gene95287:intron 25.0%
! TAATTTGAAGATAATCCATC+TGG - chr8.1:74030068-74030087 MS.gene95287:intron 25.0%
! TAGTACTATTCACACAATTA+TGG - chr8.1:74029726-74029745 MS.gene95287:intron 25.0%
! TATAGAGATCAAAATCCATT+GGG + chr8.1:74030849-74030868 None:intergenic 25.0%
! TATATATTAATCTCCTGAGT+CGG + chr8.1:74028906-74028925 None:intergenic 25.0%
! TCAAAAACAAAGTTGAGATT+TGG - chr8.1:74030502-74030521 MS.gene95287:intron 25.0%
! TTATAGAGATCAAAATCCAT+TGG + chr8.1:74030850-74030869 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr8.1:74029521-74029540 MS.gene95287:intron 25.0%
!! AAAAAAAGTTATTTGCTGCA+TGG + chr8.1:74029006-74029025 None:intergenic 25.0%
!! AAAAAAGTTATTTGCTGCAT+GGG + chr8.1:74029005-74029024 None:intergenic 25.0%
!! AAAATTCTCTTTTGACAACA+AGG - chr8.1:74030594-74030613 MS.gene95287:CDS 25.0%
!! ATCTTTCTAATTTTGTCCTT+TGG + chr8.1:74029299-74029318 None:intergenic 25.0%
!! TAATCCAATATACCTTTTCT+TGG + chr8.1:74028034-74028053 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr8.1:74028238-74028257 MS.gene95287:CDS 25.0%
!! TTATTGTTTCCTTTTGAACT+TGG - chr8.1:74028064-74028083 MS.gene95287:intron 25.0%
!!! AATCTCAACTTTGTTTTTGA+TGG + chr8.1:74030502-74030521 None:intergenic 25.0%
!!! ATAGGAATTTTTTTTTCCCA+AGG - chr8.1:74028114-74028133 MS.gene95287:intron 25.0%
!!! ATCTCAACTTTGTTTTTGAT+GGG + chr8.1:74030501-74030520 None:intergenic 25.0%
!!! CATTATTCTTTGGAATTTTG+TGG - chr8.1:74028623-74028642 MS.gene95287:intron 25.0%
!!! GAAAGATTTTTAATTCTGGT+AGG - chr8.1:74029312-74029331 MS.gene95287:intron 25.0%
!!! GATGGATTATCTTCAAATTA+TGG + chr8.1:74030068-74030087 None:intergenic 25.0%
!!! GCATATCATCTTCTTTTTTA+AGG + chr8.1:74029899-74029918 None:intergenic 25.0%
!!! TCTTCTTTTTTAAGGAAATC+AGG + chr8.1:74029891-74029910 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr8.1:74029508-74029527 MS.gene95287:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG - chr8.1:74029534-74029553 MS.gene95287:intron 30.0%
AAATTATCTCAGTCTCACTT+GGG + chr8.1:74030801-74030820 None:intergenic 30.0%
AAGTTATAAAGTTTGTCGCT+TGG - chr8.1:74029053-74029072 MS.gene95287:intron 30.0%
AGACTATGAAAGTTATCCAA+AGG - chr8.1:74029280-74029299 MS.gene95287:intron 30.0%
ATAATGACTAAAAAAGAGGG+AGG - chr8.1:74029202-74029221 MS.gene95287:intron 30.0%
ATAGAGATCAAAATCCATTG+GGG + chr8.1:74030848-74030867 None:intergenic 30.0%
ATATGTGAGATAACCTACAA+AGG - chr8.1:74030442-74030461 MS.gene95287:intron 30.0%
CCTTTCCCATTATTTGATAT+AGG + chr8.1:74029243-74029262 None:intergenic 30.0%
CTAACCTAAAGTCAAAATGT+AGG - chr8.1:74029839-74029858 MS.gene95287:intron 30.0%
GAATTGATAAAGGGCAATAA+AGG - chr8.1:74028382-74028401 MS.gene95287:intron 30.0%
GGGCAATAAAGGAAAATAAT+AGG - chr8.1:74028393-74028412 MS.gene95287:intron 30.0%
GTTGTCTATAACAGTGAATT+TGG + chr8.1:74029682-74029701 None:intergenic 30.0%
TAATGACTAAAAAAGAGGGA+GGG - chr8.1:74029203-74029222 MS.gene95287:intron 30.0%
TACTAAAAGAGAAAGGACAT+TGG - chr8.1:74029373-74029392 MS.gene95287:intron 30.0%
TATGGACAAAAGGATATTCT+TGG - chr8.1:74028742-74028761 MS.gene95287:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr8.1:74029483-74029502 None:intergenic 30.0%
TCAATGGAGATTTCAAATAG+AGG - chr8.1:74029962-74029981 MS.gene95287:intron 30.0%
TTGTTTGTGGTCGAATAATT+AGG - chr8.1:74030093-74030112 MS.gene95287:intron 30.0%
! AAAAAGTTATTTGCTGCATG+GGG + chr8.1:74029004-74029023 None:intergenic 30.0%
! AATTTTTCCTCTCCATCAAT+AGG - chr8.1:74030637-74030656 MS.gene95287:CDS 30.0%
! ATTTTTCCTCTCCATCAATA+GGG - chr8.1:74030638-74030657 MS.gene95287:CDS 30.0%
! CCTATATCAAATAATGGGAA+AGG - chr8.1:74029240-74029259 MS.gene95287:intron 30.0%
! TCATAATTTTCGTGTGTGTT+TGG - chr8.1:74028146-74028165 MS.gene95287:intron 30.0%
! TGGTTGTATTTTCTCTTCTT+GGG + chr8.1:74030563-74030582 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr8.1:74029606-74029625 None:intergenic 30.0%
!!! ATGACCTACATTTTGACTTT+AGG + chr8.1:74029846-74029865 None:intergenic 30.0%
!!! CAATGATATTTTAGTGAGTG+GGG + chr8.1:74029170-74029189 None:intergenic 30.0%
!!! CCAATGATATTTTAGTGAGT+GGG + chr8.1:74029171-74029190 None:intergenic 30.0%
!!! CCCTCTTTTTTAGTCATTAT+TGG + chr8.1:74029202-74029221 None:intergenic 30.0%
!!! GAGAATTTTTTTTCTTGAGG+TGG + chr8.1:74030583-74030602 None:intergenic 30.0%
!!! TTGGGGTTGAATATTTTGAT+TGG + chr8.1:74030545-74030564 None:intergenic 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG - chr8.1:74028548-74028567 MS.gene95287:intron 30.0%
AATTATGAGATCGTGAACCT+TGG + chr8.1:74028134-74028153 None:intergenic 35.0%
AATTCACCACCAAGTTCAAA+AGG + chr8.1:74028076-74028095 None:intergenic 35.0%
ACAAACATGTGTCCAAGAAA+AGG - chr8.1:74028019-74028038 MS.gene95287:intron 35.0%
AGTGAGACTGAGATAATTTC+AGG - chr8.1:74030802-74030821 MS.gene95287:intron 35.0%
ATCAAAATCCATTGGGGAAT+TGG + chr8.1:74030842-74030861 None:intergenic 35.0%
ATGGGAGTTTCTTGTTAGAT+TGG + chr8.1:74030483-74030502 None:intergenic 35.0%
ATTATGAGATCGTGAACCTT+GGG + chr8.1:74028133-74028152 None:intergenic 35.0%
CAAAAACAACGTGTTTGGTT+TGG + chr8.1:74028534-74028553 None:intergenic 35.0%
CACTTAAATTGGTGCATGAA+TGG + chr8.1:74029441-74029460 None:intergenic 35.0%
CCCACTCACTAAAATATCAT+TGG - chr8.1:74029168-74029187 MS.gene95287:intron 35.0%
CTACATGACCATAGAATCTA+AGG - chr8.1:74030260-74030279 MS.gene95287:intron 35.0%
CTTAGATTCTATGGTCATGT+AGG + chr8.1:74030262-74030281 None:intergenic 35.0%
GAAATTATCTCAGTCTCACT+TGG + chr8.1:74030802-74030821 None:intergenic 35.0%
GGGAATTGGCAATAGAATTT+GGG + chr8.1:74030828-74030847 None:intergenic 35.0%
GTCAATTAAGACTTCATGTG+AGG + chr8.1:74027857-74027876 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr8.1:74029601-74029620 MS.gene95287:intron 35.0%
TGCACTGTACTAAAAGAGAA+AGG - chr8.1:74029366-74029385 MS.gene95287:intron 35.0%
TGGGAGTTTCTTGTTAGATT+GGG + chr8.1:74030482-74030501 None:intergenic 35.0%
! AATCCATCTGGATTTGTTTG+TGG - chr8.1:74030080-74030099 MS.gene95287:intron 35.0%
! AATTGTGATTTGCAATGCAG+AGG - chr8.1:74030340-74030359 MS.gene95287:intron 35.0%
! ATCTGATTTTTGCACTTGCT+TGG + chr8.1:74030410-74030429 None:intergenic 35.0%
! ATTATGGTATTTTCCGACTC+AGG - chr8.1:74028890-74028909 MS.gene95287:intron 35.0%
! ATTCTCTTTTGACAACAAGG+AGG - chr8.1:74030597-74030616 MS.gene95287:CDS 35.0%
! CATTTTCTGCTTGTCACTAT+TGG - chr8.1:74030753-74030772 MS.gene95287:intron 35.0%
! GGTTGTATTTTCTCTTCTTG+GGG + chr8.1:74030562-74030581 None:intergenic 35.0%
! GTGGTTGTATTTTCTCTTCT+TGG + chr8.1:74030564-74030583 None:intergenic 35.0%
! GTGTCCAAGAAAAGGTATAT+TGG - chr8.1:74028027-74028046 MS.gene95287:intron 35.0%
! TCATTTTCAGACCCTATTGA+TGG + chr8.1:74030652-74030671 None:intergenic 35.0%
! TGTGAAGAAATTGGTCTCAT+TGG - chr8.1:74027712-74027731 MS.gene95287:CDS 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr8.1:74028455-74028474 MS.gene95287:intron 35.0%
! TTCTCTTTTAGTACAGTGCA+CGG + chr8.1:74029366-74029385 None:intergenic 35.0%
! TTGTTTCCTTTTGAACTTGG+TGG - chr8.1:74028067-74028086 MS.gene95287:intron 35.0%
!! CAAACCAAACACGTTGTTTT+TGG - chr8.1:74028532-74028551 MS.gene95287:intron 35.0%
!! GATGTTGATGATGATGATGA+TGG + chr8.1:74027802-74027821 None:intergenic 35.0%
!! GTGATGATGGAGAGAAAATT+TGG + chr8.1:74027780-74027799 None:intergenic 35.0%
!!! AACTTGGTGGTGAATTTTCA+AGG - chr8.1:74028080-74028099 MS.gene95287:intron 35.0%
!!! GCCAATGATATTTTAGTGAG+TGG + chr8.1:74029172-74029191 None:intergenic 35.0%
!!! TTGTTTTTGATTGGTGCAAG+TGG - chr8.1:74029135-74029154 MS.gene95287:intron 35.0%
AAACTACCAACTGAAGTGCA+GGG - chr8.1:74030194-74030213 MS.gene95287:intron 40.0%
AAATGGAAGTCCCAAAAGTG+AGG - chr8.1:74027975-74027994 MS.gene95287:intron 40.0%
ACAGCAATAACCATGGCAAA+GGG - chr8.1:74027898-74027917 MS.gene95287:CDS 40.0%
ACAGGCCCTTCATTATTCTT+TGG - chr8.1:74028613-74028632 MS.gene95287:intron 40.0%
AGAATAATGAAGGGCCTGTT+TGG + chr8.1:74028612-74028631 None:intergenic 40.0%
AGACTCACACACTATAAGTG+TGG - chr8.1:74030118-74030137 MS.gene95287:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr8.1:74029544-74029563 MS.gene95287:intron 40.0%
AGCTAGGATTTGTAGCTTCA+TGG - chr8.1:74028471-74028490 MS.gene95287:intron 40.0%
CATGGTTATTGCTGTCTCAA+TGG + chr8.1:74027893-74027912 None:intergenic 40.0%
CATTGAGACAGCAATAACCA+TGG - chr8.1:74027891-74027910 MS.gene95287:CDS 40.0%
CTAGCCAAAAACAACGTGTT+TGG + chr8.1:74028539-74028558 None:intergenic 40.0%
CTCATTGGTGAACTAATGCA+AGG - chr8.1:74027727-74027746 MS.gene95287:CDS 40.0%
CTGCTTGTCACTATTGGATA+TGG - chr8.1:74030759-74030778 MS.gene95287:intron 40.0%
GAGCAAGTGAAGGTTTATTC+TGG - chr8.1:74028673-74028692 MS.gene95287:intron 40.0%
GGGGAATTGGCAATAGAATT+TGG + chr8.1:74030829-74030848 None:intergenic 40.0%
GGTTATAGCTGGAGAAAGTA+TGG - chr8.1:74028724-74028743 MS.gene95287:intron 40.0%
TGTGCTTGAACTTTGAGTCT+TGG + chr8.1:74028002-74028021 None:intergenic 40.0%
TTCATGGACACAGAAATGCA+GGG + chr8.1:74030176-74030195 None:intergenic 40.0%
TTCTATTGCCAATTCCCCAA+TGG - chr8.1:74030831-74030850 MS.gene95287:intron 40.0%
TTCTTGGAGCTAAGTTTCCA+AGG - chr8.1:74028758-74028777 MS.gene95287:intron 40.0%
TTTCATGGACACAGAAATGC+AGG + chr8.1:74030177-74030196 None:intergenic 40.0%
! CTGGAGAAAGTATGGACAAA+AGG - chr8.1:74028732-74028751 MS.gene95287:intron 40.0%
! GCACTGTAGAGAATTGCTTT+TGG - chr8.1:74028570-74028589 MS.gene95287:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG - chr8.1:74028485-74028504 MS.gene95287:intron 40.0%
!! CACTTCAGTTGGTAGTTTCA+TGG + chr8.1:74030192-74030211 None:intergenic 40.0%
!! GATGATGATGATGGTGATGA+TGG + chr8.1:74027793-74027812 None:intergenic 40.0%
!! GTAGAGAATTGCTTTTGGCT+GGG - chr8.1:74028575-74028594 MS.gene95287:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG - chr8.1:74028488-74028507 MS.gene95287:intron 40.0%
!! TGTAGAGAATTGCTTTTGGC+TGG - chr8.1:74028574-74028593 MS.gene95287:intron 40.0%
AACCATGGCAAAGGGTAATG+AGG - chr8.1:74027906-74027925 MS.gene95287:CDS 45.0%
ACCATGGCAAAGGGTAATGA+GGG - chr8.1:74027907-74027926 MS.gene95287:CDS 45.0%
CGACCACAAACAAATCCAGA+TGG + chr8.1:74030086-74030105 None:intergenic 45.0%
CTATTGGATATGGACAGCAC+TGG - chr8.1:74030769-74030788 MS.gene95287:intron 45.0%
CTGTTGAGGATGGTTATAGC+TGG - chr8.1:74028713-74028732 MS.gene95287:intron 45.0%
GAAACTACCAACTGAAGTGC+AGG - chr8.1:74030193-74030212 MS.gene95287:intron 45.0%
GACAGCAATAACCATGGCAA+AGG - chr8.1:74027897-74027916 MS.gene95287:CDS 45.0%
GCATGTGTGTCTTCCTTTGT+AGG + chr8.1:74030458-74030477 None:intergenic 45.0%
GTGTGGAGAAGTGAGAAATC+CGG - chr8.1:74030135-74030154 MS.gene95287:intron 45.0%
TAAGTGGACAGAGCAAGTGA+AGG - chr8.1:74028663-74028682 MS.gene95287:intron 45.0%
TCATGGACACAGAAATGCAG+GGG + chr8.1:74030175-74030194 None:intergenic 45.0%
TGATTGGTGCAAGTGGCTTT+GGG - chr8.1:74029142-74029161 MS.gene95287:intron 45.0%
TGCACACATAGACATGCACA+AGG - chr8.1:74030373-74030392 MS.gene95287:intron 45.0%
TGTGGAGAAGTGAGAAATCC+GGG - chr8.1:74030136-74030155 MS.gene95287:intron 45.0%
TTCACTTGCTCTGTCCACTT+AGG + chr8.1:74028664-74028683 None:intergenic 45.0%
TTCAGACCCTATTGATGGAG+AGG + chr8.1:74030647-74030666 None:intergenic 45.0%
TTGATTGGTGCAAGTGGCTT+TGG - chr8.1:74029141-74029160 MS.gene95287:intron 45.0%
! TGAGTCTTGGACCTCACTTT+TGG + chr8.1:74027989-74028008 None:intergenic 45.0%
!! GAGTCTTGGACCTCACTTTT+GGG + chr8.1:74027988-74028007 None:intergenic 45.0%
!! TATTCTGGAACAGCAGCTGA+AGG - chr8.1:74028688-74028707 MS.gene95287:intron 45.0%
AGCAGCTGAAGGATCTGTTG+AGG - chr8.1:74028699-74028718 MS.gene95287:intron 50.0%
GCAGAAAAACCGTGCCTAAG+TGG - chr8.1:74028647-74028666 MS.gene95287:intron 50.0%
GCTGAAGGATCTGTTGAGGA+TGG - chr8.1:74028703-74028722 MS.gene95287:intron 50.0%
GTGGAGAAGTGAGAAATCCG+GGG - chr8.1:74030137-74030156 MS.gene95287:intron 50.0%
TCCCTCATTACCCTTTGCCA+TGG + chr8.1:74027911-74027930 None:intergenic 50.0%
TGATAGCCCTGCACTTCAGT+TGG + chr8.1:74030203-74030222 None:intergenic 50.0%
TTGCTCTGTCCACTTAGGCA+CGG + chr8.1:74028659-74028678 None:intergenic 50.0%
! GATATGGACAGCACTGGACT+AGG - chr8.1:74030775-74030794 MS.gene95287:intron 50.0%
AGGGGTCGGAATTCAAACCC+CGG + chr8.1:74030157-74030176 None:intergenic 55.0%
GGACACAGAAATGCAGGGGT+CGG + chr8.1:74030171-74030190 None:intergenic 55.0%
GGGCAGAAGCTGAACCAAAC+AGG - chr8.1:74028595-74028614 MS.gene95287:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 74027694 74030927 74027694 ID=MS.gene95287
chr8.1 mRNA 74027694 74030927 74027694 ID=MS.gene95287.t1;Parent=MS.gene95287
chr8.1 exon 74030873 74030927 74030873 ID=MS.gene95287.t1.exon1;Parent=MS.gene95287.t1
chr8.1 CDS 74030873 74030927 74030873 ID=cds.MS.gene95287.t1;Parent=MS.gene95287.t1
chr8.1 exon 74030581 74030719 74030581 ID=MS.gene95287.t1.exon2;Parent=MS.gene95287.t1
chr8.1 CDS 74030581 74030719 74030581 ID=cds.MS.gene95287.t1;Parent=MS.gene95287.t1
chr8.1 exon 74029842 74029970 74029842 ID=MS.gene95287.t1.exon3;Parent=MS.gene95287.t1
chr8.1 CDS 74029842 74029970 74029842 ID=cds.MS.gene95287.t1;Parent=MS.gene95287.t1
chr8.1 exon 74028176 74028261 74028176 ID=MS.gene95287.t1.exon4;Parent=MS.gene95287.t1
chr8.1 CDS 74028176 74028261 74028176 ID=cds.MS.gene95287.t1;Parent=MS.gene95287.t1
chr8.1 exon 74027694 74027962 74027694 ID=MS.gene95287.t1.exon5;Parent=MS.gene95287.t1
chr8.1 CDS 74027694 74027962 74027694 ID=cds.MS.gene95287.t1;Parent=MS.gene95287.t1
Gene Sequence

>MS.gene95287

ATGAAAGAGAACATTAAGTGTGAAGAAATTGGTCTCATTGGTGAACTAATGCAAGGTGAAGAGCTAGCAAAGAAGCTTTATGACCAAATTTTCTCTCCATCATCACCATCATCATCATCATCAACATCATCATCATCATCATCAACATCAACATCAACTTCCTCACATGAAGTCTTAATTGACAAATTAATTTTGTCCATTGAGACAGCAATAACCATGGCAAAGGGTAATGAGGGAAAAATTAAGACAAACAATGTCAACATGATGAATTCTCATTGTTCAAATGGAAGTCCCAAAAGTGAGGTCCAAGACTCAAAGTTCAAGCACAAACATGTGTCCAAGAAAAGGTATATTGGATTAAATTACAAAATTATTGTTTCCTTTTGAACTTGGTGGTGAATTTTCAAGGTTCATTTTTTTATAGGAATTTTTTTTTCCCAAGGTTCACGATCTCATAATTTTCGTGTGTGTTTGGTTCAGCTTTGAATATAATTGATTCTGACAGAATTGATTCTGATAGAATTGATTCTGACAGAATTGATTCTGAGAGAATTGATTTATGTTTGGATACAATTATGTAGAATTGATTAAACAAACTGATTTATGTTTGGATACAATTATGTAGAATTGCTTTTGAATGTATAATTACTAAAATAGACATAGCTAAAGGAGAATTGATAAAAAAGGAGAATTGATAAAGGGCAATAAAGGAAAATAATAGGTTGTAATAATAAAATATAATATTTACTGTTTAGAATTGATTCTAGAAAAGCTAGAAGCTAGGATTTGTAGCTTCATGGAGAATTGCTTTTGGAGGATAAAAGCAATTCTGAAAAGCCAAACCAAACACGTTGTTTTTGGCTAGAATTGCTTTTGGCACTGTAGAGAATTGCTTTTGGCTGGGCAGAAGCTGAACCAAACAGGCCCTTCATTATTCTTTGGAATTTTGTGGTGCAGAAAAACCGTGCCTAAGTGGACAGAGCAAGTGAAGGTTTATTCTGGAACAGCAGCTGAAGGATCTGTTGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATTCTTGGAGCTAAGTTTCCAAGGTAACAATCATTTTTTACGTCATCTATATTTCTTTTGTTCAAACATATCCATAATGCATCTTTAAATTCCTAGTAAATTTGACAAAATTACTGTAAGAGTTTTGTTATTCATTATGGTATTTTCCGACTCAGGAGATTAATATATATAATTGCACATAACGAATATTCTGTTGATACTAAAAAAATAAATTTAATTACTTTTGCTTGAGGTACTGATAAAACCCCATGCAGCAAATAACTTTTTTTCATCAAAGTGTCTATTTCTAAAAGTGAAAGTTATAAAGTTTGTCGCTTGGATATTATGATAAGAAAAGTTTTATTTGTTCTATTTAGGTTTTTATTTATTATATAGGAATTGTTTTTGATTGGTGCAAGTGGCTTTGGGTACCCCACTCACTAAAATATCATTGGCCAATTAACCAATAATGACTAAAAAAGAGGGAGGGAAGATAAAAAAAATCCTATATCAAATAATGGGAAAGGACAAAATGCTTTTAAAAAGACTATGAAAGTTATCCAAAGGACAAAATTAGAAAGATTTTTAATTCTGGTAGGTGCACTAATGTGTGTTATTACTGAGACTCCGTGCACTGTACTAAAAGAGAAAGGACATTGGAAATATTTATCAATTGAATAAAGTTGCTTGTACTTTTTTTTACCATTCATGCACCAATTTAAGTGAGTAATGATATTTTGACATCCATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAGTGGTTGTCAAAATATCATTTCTCAATTTAAGTTAGCATTAAATACTATAGCATGTTAGCCAAATTCACTGTTATAGACAACATCATAACATCATATTAACATGTGTAGTACTATTCACACAATTATGGAACCATTAATATAAATTCAGACAATCATGGAGCCATTAGTTTAAATTGTCAGATTAAGATTAAGACAGTTCACATTTTGAACTAAATTTACTAACCTAAAGTCAAAATGTAGGTCATCTTATCATAACAAGATGATGTGCCTGATTTCCTTAAAAAAGAAGATGATATGCCTGAATTAAATTTGTGATTCACTAAAGATAGAAACTTTAGATTTCAATGGAGATTTCAAATAGAGGAAAGAAAAACACAAACATTCAAATATAAATATTACTAGTATTTTAATATTCATGTATTTCTCATCCCTACTTGATATGTTCCATAATTTGAAGATAATCCATCTGGATTTGTTTGTGGTCGAATAATTAGGCTAGACTCACACACTATAAGTGTGGAGAAGTGAGAAATCCGGGGTTTGAATTCCGACCCCTGCATTTCTGTGTCCATGAAACTACCAACTGAAGTGCAGGGCTATCAATACCACAAAAAATTTTAATATCATTTTTTATATTTCCTACATGACCATAGAATCTAAGGTTATTTTGTCATTCTTATTTTTCTATTGAAGCAAAATGTTTTAATATTTATCTAACAAATTGTGATTTGCAATGCAGAGGATATTACAGATGCACACATAGACATGCACAAGGTTGTCTAGCTACCAAGCAAGTGCAAAAATCAGATGAAGATGAAATGATATGTGAGATAACCTACAAAGGAAGACACACATGCACCCAATCTAACAAGAAACTCCCATCAAAAACAAAGTTGAGATTTGGACAAAATAAATCACAATCCAATCAAAATATTCAACCCCAAGAAGAGAAAATACAACCACCTCAAGAAAAAAAATTCTCTTTTGACAACAAGGAGGATATATTTCAATCATTCAATTTTTCCTCTCCATCAATAGGGTCTGAAAATGAAGATAACAACATATTTTTAGAGACCATGATTGAAAATAATTTCATGGAAAATGAGGATAACAATATATTCTCAGAATCAAACATTTTCTGCTTGTCACTATTGGATATGGACAGCACTGGACTAGGCCCAAGTGAGACTGAGATAATTTCAGGCCCAAATTCTATTGCCAATTCCCCAATGGATTTTGATCTCTATAATGACATAAATTTCGACATGGATGATTTCTCTATCAACACACAAGAACTTTGCTATTGA

Protein sequence

>MS.gene95287.t1

MKENIKCEEIGLIGELMQAITMAKGNEGKIKTNNVNMMNSHCSNGSPKSEVQDSKFKHKHVSKKRKTVPKWTEQVKVYSGTAAEGSVEDGYSWRKYGQKDILGAKFPRGYYRCTHRHAQGCLATKQVQKSDEDEMIWSENEDNNIFLETMIENNFMENEDNNIFSESNIFCLSLLDMDSTGLGPSETEIISGPNSIANSPMDFDLYNDINFDMDDFSINTQELCY