Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05861.t1 | RHN43745.1 | 95.3 | 488 | 21 | 2 | 1 | 487 | 72 | 558 | 6.50E-267 | 929.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05861.t1 | Q9C9T2 | 52.7 | 351 | 151 | 7 | 75 | 420 | 72 | 412 | 1.2e-99 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05861.t1 | G7L9S2 | 95.3 | 488 | 21 | 2 | 1 | 487 | 1 | 487 | 4.7e-267 | 929.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene05861 | 0.829156 | 6.03E-55 | -1.69E-46 |
| MS.gene050148 | MS.gene05861 | 0.839575 | 1.46E-57 | -1.69E-46 |
| MS.gene050149 | MS.gene05861 | 0.817831 | 2.69E-52 | -1.69E-46 |
| MS.gene050669 | MS.gene05861 | 0.819839 | 9.41E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene05861 | 0.814128 | 1.80E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene05861 | 0.803046 | 4.20E-49 | -1.69E-46 |
| MS.gene05861 | MS.gene05862 | 0.935839 | 4.50E-97 | -1.69E-46 |
| MS.gene05861 | MS.gene05969 | 0.998185 | 3.15E-258 | -1.69E-46 |
| MS.gene05861 | MS.gene061045 | 0.808999 | 2.35E-50 | -1.69E-46 |
| MS.gene05861 | MS.gene061047 | 0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene05861 | MS.gene061682 | 0.848597 | 5.54E-60 | -1.69E-46 |
| MS.gene05861 | MS.gene063094 | 0.832292 | 1.03E-55 | -1.69E-46 |
| MS.gene05861 | MS.gene063690 | 0.933509 | 1.68E-95 | -1.69E-46 |
| MS.gene05861 | MS.gene06539 | 0.841002 | 6.19E-58 | -1.69E-46 |
| MS.gene05861 | MS.gene06784 | 0.852229 | 5.29E-61 | -1.69E-46 |
| MS.gene05861 | MS.gene09747 | 0.8329 | 7.26E-56 | -1.69E-46 |
| MS.gene05861 | MS.gene21214 | 0.836182 | 1.09E-56 | -1.69E-46 |
| MS.gene05861 | MS.gene22720 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene05861 | MS.gene25879 | 0.868375 | 6.84E-66 | -1.69E-46 |
| MS.gene05861 | MS.gene36865 | 0.817342 | 3.47E-52 | -1.69E-46 |
| MS.gene05861 | MS.gene38123 | 0.809273 | 2.05E-50 | -1.69E-46 |
| MS.gene05861 | MS.gene49156 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene05861 | MS.gene56725 | 0.852469 | 4.52E-61 | -1.69E-46 |
| MS.gene05861 | MS.gene57124 | 0.81354 | 2.43E-51 | -1.69E-46 |
| MS.gene05861 | MS.gene63435 | 0.810345 | 1.21E-50 | -1.69E-46 |
| MS.gene05861 | MS.gene68141 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene05861 | MS.gene73869 | 0.816785 | 4.62E-52 | -1.69E-46 |
| MS.gene05861 | MS.gene79758 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene05861 | MS.gene80821 | 0.803645 | 3.16E-49 | -1.69E-46 |
| MS.gene05861 | MS.gene83853 | 0.806699 | 7.25E-50 | -1.69E-46 |
| MS.gene05861 | MS.gene95287 | 0.827365 | 1.63E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05861.t1 | MTR_8g104490 | 95.287 | 488 | 21 | 2 | 1 | 487 | 1 | 487 | 0.0 | 952 |
| MS.gene05861.t1 | MTR_8g104510 | 88.000 | 475 | 53 | 4 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene05861.t1 | MTR_8g104490 | 94.799 | 423 | 20 | 2 | 66 | 487 | 1 | 422 | 0.0 | 823 |
| MS.gene05861.t1 | MTR_6g083730 | 60.744 | 484 | 175 | 11 | 1 | 478 | 1 | 475 | 0.0 | 556 |
| MS.gene05861.t1 | MTR_6g083320 | 65.781 | 301 | 97 | 6 | 1 | 297 | 1 | 299 | 1.32e-131 | 388 |
| MS.gene05861.t1 | MTR_6g083320 | 50.413 | 121 | 49 | 7 | 361 | 478 | 297 | 409 | 1.48e-21 | 97.1 |
| MS.gene05861.t1 | MTR_2g011810 | 40.749 | 454 | 224 | 9 | 4 | 448 | 16 | 433 | 7.43e-110 | 339 |
| MS.gene05861.t1 | MTR_4g090970 | 45.052 | 384 | 199 | 5 | 4 | 384 | 15 | 389 | 9.78e-109 | 336 |
| MS.gene05861.t1 | MTR_4g128600 | 45.596 | 386 | 197 | 6 | 2 | 384 | 12 | 387 | 9.02e-108 | 334 |
| MS.gene05861.t1 | MTR_2g450080 | 41.452 | 427 | 228 | 8 | 30 | 440 | 34 | 454 | 4.11e-103 | 320 |
| MS.gene05861.t1 | MTR_4g106810 | 48.101 | 316 | 154 | 5 | 12 | 326 | 8 | 314 | 1.64e-89 | 284 |
| MS.gene05861.t1 | MTR_7g112000 | 34.177 | 395 | 235 | 9 | 50 | 433 | 44 | 424 | 1.48e-55 | 194 |
| MS.gene05861.t1 | MTR_7g111980 | 35.777 | 341 | 190 | 10 | 50 | 379 | 59 | 381 | 1.83e-47 | 173 |
| MS.gene05861.t1 | MTR_7g111980 | 37.500 | 296 | 170 | 8 | 92 | 379 | 10 | 298 | 7.34e-45 | 164 |
| MS.gene05861.t1 | MTR_7g111960 | 34.593 | 344 | 200 | 10 | 50 | 381 | 60 | 390 | 3.50e-43 | 161 |
| MS.gene05861.t1 | MTR_6g083810 | 55.556 | 135 | 55 | 5 | 1 | 131 | 1 | 134 | 1.51e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05861.t1 | AT1G73805 | 48.598 | 428 | 196 | 11 | 1 | 420 | 1 | 412 | 1.71e-135 | 399 |
| MS.gene05861.t1 | AT5G57580 | 47.287 | 387 | 188 | 7 | 3 | 384 | 12 | 387 | 1.98e-109 | 338 |
| MS.gene05861.t1 | AT4G25800 | 46.809 | 376 | 188 | 5 | 13 | 384 | 9 | 376 | 3.18e-107 | 331 |
| MS.gene05861.t1 | AT4G25800 | 46.809 | 376 | 188 | 5 | 13 | 384 | 9 | 376 | 3.18e-107 | 331 |
| MS.gene05861.t1 | AT2G18750 | 45.098 | 357 | 192 | 4 | 29 | 384 | 36 | 389 | 6.57e-105 | 326 |
| MS.gene05861.t1 | AT2G18750 | 45.098 | 357 | 192 | 4 | 29 | 384 | 36 | 389 | 6.57e-105 | 326 |
| MS.gene05861.t1 | AT2G18750 | 45.098 | 357 | 192 | 4 | 29 | 384 | 36 | 389 | 6.57e-105 | 326 |
| MS.gene05861.t1 | AT2G24300 | 43.117 | 385 | 210 | 5 | 4 | 384 | 3 | 382 | 1.70e-96 | 303 |
| MS.gene05861.t1 | AT2G24300 | 43.117 | 385 | 210 | 5 | 4 | 384 | 7 | 386 | 1.99e-96 | 303 |
| MS.gene05861.t1 | AT4G31000 | 43.514 | 370 | 195 | 7 | 17 | 382 | 21 | 380 | 5.92e-95 | 298 |
| MS.gene05861.t1 | AT5G62570 | 39.387 | 424 | 227 | 10 | 19 | 436 | 21 | 420 | 5.70e-90 | 284 |
| MS.gene05861.t1 | AT5G62570 | 39.100 | 422 | 233 | 9 | 21 | 436 | 2 | 405 | 3.27e-89 | 281 |
| MS.gene05861.t1 | AT5G62570 | 43.642 | 346 | 175 | 7 | 19 | 358 | 21 | 352 | 7.00e-89 | 277 |
| MS.gene05861.t1 | AT2G24300 | 43.030 | 330 | 183 | 3 | 58 | 384 | 8 | 335 | 4.73e-85 | 272 |
| MS.gene05861.t1 | AT5G62570 | 44.369 | 293 | 147 | 6 | 19 | 309 | 21 | 299 | 8.95e-71 | 227 |
| MS.gene05861.t1 | AT4G31000 | 39.514 | 329 | 172 | 7 | 58 | 382 | 54 | 359 | 1.66e-70 | 234 |
| MS.gene05861.t1 | AT5G26920 | 35.422 | 367 | 205 | 10 | 29 | 385 | 24 | 368 | 1.02e-67 | 223 |
| MS.gene05861.t1 | AT5G26920 | 35.422 | 367 | 205 | 10 | 29 | 385 | 24 | 368 | 1.03e-66 | 224 |
| MS.gene05861.t1 | AT5G26920 | 35.150 | 367 | 198 | 11 | 29 | 385 | 24 | 360 | 1.08e-63 | 216 |
Find 0 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAGTTAATGTTTATA+TGG | - | 57351:27693-27712 | MS.gene05861:CDS | 10.0% |
| !! | AACATAATAAAATGAATATT+GGG | + | 57351:25790-25809 | MS.gene05861:intergenic | 10.0% |
| !!! | TTTTTGTTTAGTTTATTTTA+AGG | - | 57351:27193-27212 | MS.gene05861:intron | 10.0% |
| !! | AGATTGATTATAATATGTAT+AGG | - | 57351:26905-26924 | MS.gene05861:intron | 15.0% |
| !! | CTTTCTATTTATATATGATT+AGG | - | 57351:26213-26232 | MS.gene05861:intron | 15.0% |
| !! | GAACATAATAAAATGAATAT+TGG | + | 57351:25791-25810 | MS.gene05861:intergenic | 15.0% |
| !! | GTTTCTGATAAATTTAATTA+AGG | + | 57351:26097-26116 | MS.gene05861:intergenic | 15.0% |
| !! | TGATAAATTTAATTAAGGTA+TGG | + | 57351:26092-26111 | MS.gene05861:intergenic | 15.0% |
| !! | TTAATTTCATTTCGAAATTA+TGG | + | 57351:26063-26082 | MS.gene05861:intergenic | 15.0% |
| !!! | TATTTTTATGTTTTCTTTCT+TGG | - | 57351:26944-26963 | MS.gene05861:intron | 15.0% |
| !! | AAAAATCAATGCATAGAAAA+AGG | + | 57351:27967-27986 | MS.gene05861:intergenic | 20.0% |
| !! | AACATGAATTGAAAACTTAA+TGG | + | 57351:26331-26350 | MS.gene05861:intergenic | 20.0% |
| !! | ACACATCAATGTTTAATTAA+AGG | + | 57351:27124-27143 | MS.gene05861:intergenic | 20.0% |
| !! | AGAATTAAATCTTACTATGA+GGG | - | 57351:26606-26625 | MS.gene05861:CDS | 20.0% |
| !! | ATATAAATAAAGGATTAGAG+AGG | - | 57351:27224-27243 | MS.gene05861:intron | 20.0% |
| !! | ATTATGAATGTGTCAATAAA+TGG | - | 57351:27656-27675 | MS.gene05861:CDS | 20.0% |
| !! | ATTCAAATGGATGATAAATT+GGG | + | 57351:27828-27847 | MS.gene05861:intergenic | 20.0% |
| !! | GCAAATTAAATGAACTATAT+AGG | + | 57351:27992-28011 | MS.gene05861:intergenic | 20.0% |
| !! | GGTTGTTAAGATATAAATAA+AGG | - | 57351:27214-27233 | MS.gene05861:intron | 20.0% |
| !! | TATAAATAAAGGATTAGAGA+GGG | - | 57351:27225-27244 | MS.gene05861:intron | 20.0% |
| !! | TATGTATCAAACAATAACAA+TGG | - | 57351:28363-28382 | MS.gene05861:intron | 20.0% |
| !! | TTGGTCAAATTAATATGAAT+AGG | - | 57351:26963-26982 | MS.gene05861:intron | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | - | 57351:28318-28337 | MS.gene05861:intron | 20.0% |
| !!! | TGTAAACATTTTCATATTGA+AGG | + | 57351:26190-26209 | MS.gene05861:intergenic | 20.0% |
| !!! | TTTTTTTTTGAGTTAGAAGA+TGG | + | 57351:27619-27638 | MS.gene05861:intergenic | 20.0% |
| ! | AACAATAACAATGGACAAAT+AGG | - | 57351:28372-28391 | MS.gene05861:intron | 25.0% |
| ! | AAGATATAACAAACCAACTA+TGG | + | 57351:27366-27385 | MS.gene05861:intergenic | 25.0% |
| ! | AATATTGTGAAAGAGAGAAA+TGG | - | 57351:26562-26581 | MS.gene05861:intron | 25.0% |
| ! | ACAAAAAATTGACCTCAAAA+GGG | - | 57351:27525-27544 | MS.gene05861:CDS | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | + | 57351:26478-26497 | MS.gene05861:intergenic | 25.0% |
| ! | ATAGAAATTGTAGTTCTTGA+TGG | - | 57351:26484-26503 | MS.gene05861:intron | 25.0% |
| ! | ATATTGTGAAAGAGAGAAAT+GGG | - | 57351:26563-26582 | MS.gene05861:intron | 25.0% |
| ! | CATTCAAATGGATGATAAAT+TGG | + | 57351:27829-27848 | MS.gene05861:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | + | 57351:26477-26496 | MS.gene05861:intergenic | 25.0% |
| ! | GAAATTATGGTAAAGTTGAA+TGG | + | 57351:26050-26069 | MS.gene05861:intergenic | 25.0% |
| ! | GAGAATTAAATCTTACTATG+AGG | - | 57351:26605-26624 | MS.gene05861:CDS | 25.0% |
| ! | GCTGTTAATTAACAATTAGT+TGG | - | 57351:27155-27174 | MS.gene05861:intron | 25.0% |
| ! | TTCAAATGGATGATAAATTG+GGG | + | 57351:27827-27846 | MS.gene05861:intergenic | 25.0% |
| ! | TTTCAAAGCAATAATCATCA+AGG | - | 57351:28282-28301 | MS.gene05861:intron | 25.0% |
| !!! | ATAGTTGGTTTGTTATATCT+TGG | - | 57351:27365-27384 | MS.gene05861:intron | 25.0% |
| !!! | GAATTATGTTATTTCCACAT+TGG | - | 57351:27312-27331 | MS.gene05861:intron | 25.0% |
| !!! | TTTATTTCTGTGTTCTTTCT+TGG | - | 57351:27002-27021 | MS.gene05861:intron | 25.0% |
| ACACAACTATAGGACTAAAA+AGG | + | 57351:27286-27305 | MS.gene05861:intergenic | 30.0% | |
| AGTTAACTAATCTAGTTACC+TGG | - | 57351:27076-27095 | MS.gene05861:intron | 30.0% | |
| AGTTCACTGATAATTCTAGT+TGG | - | 57351:26656-26675 | MS.gene05861:CDS | 30.0% | |
| ATAACAAACCAACTATGGAA+AGG | + | 57351:27361-27380 | MS.gene05861:intergenic | 30.0% | |
| ATATGATTAGGTGAATGAAG+AGG | - | 57351:26225-26244 | MS.gene05861:intron | 30.0% | |
| ATTCTTTCTGACACAACTAT+AGG | + | 57351:27296-27315 | MS.gene05861:intergenic | 30.0% | |
| CACAAAAAATTGACCTCAAA+AGG | - | 57351:27524-27543 | MS.gene05861:CDS | 30.0% | |
| CATGCTTGCATATAAATTCA+AGG | + | 57351:26878-26897 | MS.gene05861:intergenic | 30.0% | |
| CGATGATCTTTAACAACAAA+AGG | + | 57351:26766-26785 | MS.gene05861:intergenic | 30.0% | |
| CTAGAGAAAATTGGTAAAGA+TGG | - | 57351:27494-27513 | MS.gene05861:CDS | 30.0% | |
| CTAGTAAAAAGGAATCATCA+TGG | - | 57351:26518-26537 | MS.gene05861:intron | 30.0% | |
| GAGTAATTAATGTACAGTAG+AGG | + | 57351:25925-25944 | MS.gene05861:intergenic | 30.0% | |
| GGTAATAGGAGAAATTGTTA+TGG | - | 57351:25963-25982 | MS.gene05861:intron | 30.0% | |
| TAACAAACCAACTATGGAAA+GGG | + | 57351:27360-27379 | MS.gene05861:intergenic | 30.0% | |
| TAGAAAAAGGTAGAAGTAGA+AGG | + | 57351:27954-27973 | MS.gene05861:intergenic | 30.0% | |
| TGTGAATCTAAGAAGCTATA+AGG | + | 57351:28450-28469 | MS.gene05861:intergenic | 30.0% | |
| TTAAATCTTACTATGAGGGA+TGG | - | 57351:26610-26629 | MS.gene05861:CDS | 30.0% | |
| TTCTTAGATTCACAATCAGA+CGG | - | 57351:28456-28475 | MS.gene05861:CDS | 30.0% | |
| TTTAATTCTCCTGTAAGCAA+TGG | + | 57351:26595-26614 | MS.gene05861:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | - | 57351:27841-27860 | MS.gene05861:CDS | 30.0% | |
| TTTGGCATATTGCATTCAAA+TGG | + | 57351:27841-27860 | MS.gene05861:intergenic | 30.0% | |
| ! | AGATTTTCCTCCTAGTAAAA+AGG | - | 57351:26507-26526 | MS.gene05861:intron | 30.0% |
| ! | CATGATGATTCCTTTTTACT+AGG | + | 57351:26520-26539 | MS.gene05861:intergenic | 30.0% |
| ! | TGAATATTGGGTTGTTTGAT+TGG | + | 57351:25778-25797 | MS.gene05861:intergenic | 30.0% |
| ! | TGGTATTGCAATCAGATTTT+AGG | - | 57351:27713-27732 | MS.gene05861:CDS | 30.0% |
| !! | GGTTTGTTATATCTTGGTTA+AGG | - | 57351:27371-27390 | MS.gene05861:intron | 30.0% |
| !! | TTTGTTGTTAAAGATCATCG+CGG | - | 57351:26766-26785 | MS.gene05861:intron | 30.0% |
| !!! | CTTTTGAGGTCAATTTTTTG+TGG | + | 57351:27526-27545 | MS.gene05861:intergenic | 30.0% |
| !!! | TTTTTTGTATATCACACGAC+AGG | - | 57351:28243-28262 | MS.gene05861:intron | 30.0% |
| ACATGCAAAGACTTGTGTAA+TGG | - | 57351:27775-27794 | MS.gene05861:CDS | 35.0% | |
| AGTAGAATACTAGACATGGA+TGG | - | 57351:26385-26404 | MS.gene05861:CDS | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | - | 57351:28043-28062 | MS.gene05861:intron | 35.0% | |
| ATGGTTAGAGCTAACATCAA+TGG | - | 57351:27860-27879 | MS.gene05861:CDS | 35.0% | |
| ATGTCACGCTGAATTTCAAT+TGG | + | 57351:28195-28214 | MS.gene05861:intergenic | 35.0% | |
| ATTCTACTACCGGTGAATAT+TGG | + | 57351:26373-26392 | MS.gene05861:intergenic | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | + | 57351:26301-26320 | MS.gene05861:intergenic | 35.0% | |
| ATTTCTATCTTGATTGGGTG+AGG | + | 57351:26472-26491 | MS.gene05861:intergenic | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | - | 57351:27776-27795 | MS.gene05861:CDS | 35.0% | |
| CATGTCTAGTATTCTACTAC+CGG | + | 57351:26383-26402 | MS.gene05861:intergenic | 35.0% | |
| CGAGACATTAACAACACATT+GGG | - | 57351:27899-27918 | MS.gene05861:CDS | 35.0% | |
| CTTACCACTCTTCTAAGTAA+AGG | + | 57351:26024-26043 | MS.gene05861:intergenic | 35.0% | |
| CTTTCACTTCCAATATTCAC+CGG | - | 57351:26361-26380 | MS.gene05861:CDS | 35.0% | |
| GGGTGAAAATAAAATGCCTA+TGG | + | 57351:27340-27359 | MS.gene05861:intergenic | 35.0% | |
| GGTATGATGTCATTCATGAA+TGG | + | 57351:28429-28448 | MS.gene05861:intergenic | 35.0% | |
| GTGATGCATACATCTGAAAA+GGG | + | 57351:27051-27070 | MS.gene05861:intergenic | 35.0% | |
| TATTTCCACATTGGTACCAT+AGG | - | 57351:27321-27340 | MS.gene05861:intron | 35.0% | |
| TGGAATGTCAGAGAAAATGT+GGG | - | 57351:27739-27758 | MS.gene05861:CDS | 35.0% | |
| TGTGATGCATACATCTGAAA+AGG | + | 57351:27052-27071 | MS.gene05861:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | - | 57351:26300-26319 | MS.gene05861:CDS | 35.0% | |
| TTGGAATGTCAGAGAAAATG+TGG | - | 57351:27738-27757 | MS.gene05861:CDS | 35.0% | |
| ! | AACATGCAAAACCTTTTCTC+TGG | - | 57351:25991-26010 | MS.gene05861:intron | 35.0% |
| ! | AACGTTGCTTTGTTAACTCA+AGG | - | 57351:28092-28111 | MS.gene05861:intron | 35.0% |
| ! | ATTTTCACCCTTTCCATAGT+TGG | - | 57351:27350-27369 | MS.gene05861:intron | 35.0% |
| ! | CCAATGTGTTGTTAATGTCT+CGG | + | 57351:27901-27920 | MS.gene05861:intergenic | 35.0% |
| ! | GATGATTCCTTTTTACTAGG+AGG | + | 57351:26517-26536 | MS.gene05861:intergenic | 35.0% |
| ! | TCATTCATGAATGGTGATGT+GGG | + | 57351:28420-28439 | MS.gene05861:intergenic | 35.0% |
| ! | TGCAATCAGATTTTAGGCAT+TGG | - | 57351:27719-27738 | MS.gene05861:CDS | 35.0% |
| !! | ATTGCTTTGAAATTGCTCCA+CGG | + | 57351:28274-28293 | MS.gene05861:intergenic | 35.0% |
| !! | GGGTTGTTTGATTGGTTTAA+GGG | + | 57351:25770-25789 | MS.gene05861:intergenic | 35.0% |
| !! | TCTCTAGAAAGAAAAGCATC+CGG | - | 57351:27248-27267 | MS.gene05861:intron | 35.0% |
| !! | TGATGTTAGCTCTAACCATT+TGG | + | 57351:27859-27878 | MS.gene05861:intergenic | 35.0% |
| !! | TGGGTTGTTTGATTGGTTTA+AGG | + | 57351:25771-25790 | MS.gene05861:intergenic | 35.0% |
| AAATGCCTATGGTACCAATG+TGG | + | 57351:27329-27348 | MS.gene058609:intergenic | 40.0% | |
| AACAAACGTTATGTCTACCG+TGG | - | 57351:27800-27819 | MS.gene05861:CDS | 40.0% | |
| ACTCTCAATTCTCATGTGAC+AGG | - | 57351:25941-25960 | MS.gene05861:intron | 40.0% | |
| ACTTCGTCCTTTAGATTTGG+TGG | + | 57351:27467-27486 | MS.gene05861:intergenic | 40.0% | |
| ATTACCACCAAGTACATACC+AGG | + | 57351:27097-27116 | MS.gene05861:intergenic | 40.0% | |
| CAAATCTAAAGGACGAAGTG+TGG | - | 57351:27468-27487 | MS.gene05861:CDS | 40.0% | |
| CACACTTCGTCCTTTAGATT+TGG | + | 57351:27470-27489 | MS.gene05861:intergenic | 40.0% | |
| CAGTCATGCCTTCAAGAATT+CGG | + | 57351:26741-26760 | MS.gene05861:intergenic | 40.0% | |
| CATTAACAACACATTGGGCA+AGG | - | 57351:27904-27923 | MS.gene05861:CDS | 40.0% | |
| CCGAGACATTAACAACACAT+TGG | - | 57351:27898-27917 | MS.gene05861:CDS | 40.0% | |
| CGGTAGTAGAATACTAGACA+TGG | - | 57351:26381-26400 | MS.gene05861:CDS | 40.0% | |
| CTAGTTACCTGGTATGTACT+TGG | - | 57351:27087-27106 | MS.gene05861:intron | 40.0% | |
| CTCTCAATTCTCATGTGACA+GGG | - | 57351:25942-25961 | MS.gene05861:intron | 40.0% | |
| CTTGAAGCTCTATCAACGAT+TGG | + | 57351:28510-28529 | MS.gene05861:intergenic | 40.0% | |
| GGAACCTTTACTTAGAAGAG+TGG | - | 57351:26017-26036 | MS.gene05861:intron | 40.0% | |
| GTAGACTTGTAGGGACTATT+TGG | + | 57351:26450-26469 | MS.gene05861:intergenic | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | + | 57351:26643-26662 | MS.gene05861:intergenic | 40.0% | |
| GTTCTCATGCGTTTGTCATT+TGG | + | 57351:25711-25730 | MS.gene05861:intergenic | 40.0% | |
| TGATTAGGTGAATGAAGAGG+TGG | - | 57351:26228-26247 | MS.gene05861:intron | 40.0% | |
| TTAGATTCACAATCAGACGG+TGG | - | 57351:28459-28478 | MS.gene05861:CDS | 40.0% | |
| TTCTCATGTGACAGGGTAAT+AGG | - | 57351:25949-25968 | MS.gene05861:intron | 40.0% | |
| TTTGTATATCACACGACAGG+TGG | - | 57351:28246-28265 | MS.gene05861:intron | 40.0% | |
| ! | ATGAATGGTGATGTGGGAAA+TGG | + | 57351:28414-28433 | MS.gene05861:intergenic | 40.0% |
| ! | CAAAGTGTCCGAATTCTTGA+AGG | - | 57351:26730-26749 | MS.gene05861:CDS | 40.0% |
| ! | CAATCGTTGATAGAGCTTCA+AGG | - | 57351:28508-28527 | MS.gene05861:CDS | 40.0% |
| ! | CTTCGTCCTTTAGATTTGGT+GGG | + | 57351:27466-27485 | MS.gene05861:intergenic | 40.0% |
| ! | GTCATTCATGAATGGTGATG+TGG | + | 57351:28421-28440 | MS.gene05861:intergenic | 40.0% |
| ! | GTGTTGTTAATGTCTCGGAT+GGG | + | 57351:27896-27915 | MS.gene05861:intergenic | 40.0% |
| ! | TGAGAGAAGCATATGCTAGA+TGG | - | 57351:28033-28052 | MS.gene05861:intron | 40.0% |
| ! | TGTGTTGTTAATGTCTCGGA+TGG | + | 57351:27897-27916 | MS.gene05861:intergenic | 40.0% |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | - | 57351:26701-26720 | MS.gene05861:CDS | 40.0% |
| !! | GACTTTGTTATTGATCGTGG+TGG | + | 57351:26277-26296 | MS.gene05861:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | + | 57351:26280-26299 | MS.gene05861:intergenic | 40.0% |
| AAAAAGGTTGACCCTGGAAC+CGG | + | 57351:27270-27289 | MS.gene058609:intergenic | 45.0% | |
| AAGGTTCCAAGCCAGAGAAA+AGG | + | 57351:26005-26024 | MS.gene05861:intergenic | 45.0% | |
| ACACCACCCACCAAATCTAA+AGG | - | 57351:27457-27476 | MS.gene05861:CDS | 45.0% | |
| AGGACTAAAAAGGTTGACCC+TGG | + | 57351:27276-27295 | MS.gene05861:intergenic | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | - | 57351:26625-26644 | MS.gene05861:CDS | 45.0% | |
| ATTGGGTGAGGTAGACTTGT+AGG | + | 57351:26460-26479 | MS.gene05861:intergenic | 45.0% | |
| CTTGAGAAACTCTTGCACTG+TGG | + | 57351:27555-27574 | MS.gene05861:intergenic | 45.0% | |
| GACAAATAGGTTGCATCGAG+GGG | - | 57351:28385-28404 | MS.gene05861:intron | 45.0% | |
| GAGCCTATGAGGATCAACTA+CGG | + | 57351:27582-27601 | MS.gene05861:intergenic | 45.0% | |
| GGACAAATAGGTTGCATCGA+GGG | - | 57351:28384-28403 | MS.gene05861:intron | 45.0% | |
| GGATGATAAATTGGGGTCCA+CGG | + | 57351:27820-27839 | MS.gene05861:intergenic | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | - | 57351:26627-26646 | MS.gene05861:CDS | 45.0% | |
| GGGAAAAGACCATTGCTTAC+AGG | - | 57351:26583-26602 | MS.gene05861:intron | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | - | 57351:26626-26645 | MS.gene05861:CDS | 45.0% | |
| GTGTGGCGTCTAGAGAAAAT+TGG | - | 57351:27485-27504 | MS.gene05861:CDS | 45.0% | |
| GTTAATGTCTCGGATGGGAA+TGG | + | 57351:27891-27910 | MS.gene05861:intergenic | 45.0% | |
| GTTACCTGGTATGTACTTGG+TGG | - | 57351:27090-27109 | MS.gene05861:intron | 45.0% | |
| TGATCCTCATAGGCTCAGAA+AGG | - | 57351:27586-27605 | MS.gene05861:CDS | 45.0% | |
| TGGACAAATAGGTTGCATCG+AGG | - | 57351:28383-28402 | MS.gene05861:intron | 45.0% | |
| TGTACCTTTCTGAGCCTATG+AGG | + | 57351:27593-27612 | MS.gene05861:intergenic | 45.0% | |
| TGTCCGTAGTTGATCCTCAT+AGG | - | 57351:27576-27595 | MS.gene05861:CDS | 45.0% | |
| TTGGGTGAGGTAGACTTGTA+GGG | + | 57351:26459-26478 | MS.gene05861:intergenic | 45.0% | |
| ! | AATGGTGATGTGGGAAATGG+TGG | + | 57351:28411-28430 | MS.gene05861:intergenic | 45.0% |
| ! | ACGATTGGTCCTGAACTTGA+AGG | + | 57351:28495-28514 | MS.gene05861:intergenic | 45.0% |
| ! | CACTGTGGTAATCCCTTTTG+AGG | + | 57351:27540-27559 | MS.gene05861:intergenic | 45.0% |
| ! | GATCTAACGCCTTCAAGTTC+AGG | - | 57351:28483-28502 | MS.gene05861:CDS | 45.0% |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | - | 57351:25996-26015 | MS.gene05861:intron | 45.0% |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | - | 57351:26700-26719 | MS.gene05861:CDS | 45.0% |
| ! | TCGTTGATAGAGCTTCAAGG+TGG | - | 57351:28511-28530 | MS.gene05861:CDS | 45.0% |
| ! | TGCTAGATGGAATGAGTTGG+AGG | - | 57351:28046-28065 | MS.gene05861:intron | 45.0% |
| !! | AAAGAAAAGCATCCGGTTCC+AGG | - | 57351:27255-27274 | MS.gene05861:intron | 45.0% |
| !! | AAGAAAAGCATCCGGTTCCA+GGG | - | 57351:27256-27275 | MS.gene05861:intron | 45.0% |
| !! | GGAATCATCATGGACTAGTG+AGG | - | 57351:26528-26547 | MS.gene05861:intron | 45.0% |
| TGTCTCGGATGGGAATGGTT+TGG | + | 57351:27886-27905 | MS.gene05861:intergenic | 50.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | + | 57351:26721-26740 | MS.gene05861:intergenic | 50.0% |
| !! | CGTCCTTTAGATTTGGTGGG+TGG | + | 57351:27463-27482 | MS.gene05861:intergenic | 50.0% |
| TCACACGACAGGTGGAACCG+TGG | - | 57351:28254-28273 | MS.gene05861:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57351 | gene | 25660 | 28539 | 25660 | ID=MS.gene05861 |
| 57351 | mRNA | 25660 | 28539 | 25660 | ID=MS.gene05861.t1;Parent=MS.gene05861 |
| 57351 | exon | 28445 | 28539 | 28445 | ID=MS.gene05861.t1.exon1;Parent=MS.gene05861.t1 |
| 57351 | CDS | 28445 | 28539 | 28445 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| 57351 | exon | 28161 | 28236 | 28161 | ID=MS.gene05861.t1.exon2;Parent=MS.gene05861.t1 |
| 57351 | CDS | 28161 | 28236 | 28161 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| 57351 | exon | 27406 | 27964 | 27406 | ID=MS.gene05861.t1.exon3;Parent=MS.gene05861.t1 |
| 57351 | CDS | 27406 | 27964 | 27406 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| 57351 | exon | 26592 | 26752 | 26592 | ID=MS.gene05861.t1.exon4;Parent=MS.gene05861.t1 |
| 57351 | CDS | 26592 | 26752 | 26592 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| 57351 | exon | 26274 | 26471 | 26274 | ID=MS.gene05861.t1.exon5;Parent=MS.gene05861.t1 |
| 57351 | CDS | 26274 | 26471 | 26274 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| 57351 | exon | 26086 | 26185 | 26086 | ID=MS.gene05861.t1.exon6;Parent=MS.gene05861.t1 |
| 57351 | CDS | 26086 | 26185 | 26086 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| 57351 | exon | 25660 | 25934 | 25660 | ID=MS.gene05861.t1.exon7;Parent=MS.gene05861.t1 |
| 57351 | CDS | 25660 | 25934 | 25660 | ID=cds.MS.gene05861.t1;Parent=MS.gene05861.t1 |
| Gene Sequence |
| Protein sequence |
