AlfalfaGEDB | MS.gene05969

M. sativa cultivar XinJiangDaYe / MS.gene05969

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005516
PFAM: PF07887.14 PF20451.1 PF20452.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05969.t1	RHN43745.1	95.3	488	21	2	1	487	72	558	6.50E-267	929.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05969.t1	Q9C9T2	52.7	351	151	7	75	420	72	412	1.2e-99	365.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05969.t1	G7L9S2	95.3	488	21	2	1	487	1	487	4.7e-267	929.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049409	MS.gene05969	0.826325	2.89E-54	-1.69E-46
MS.gene050148	MS.gene05969	0.840104	1.06E-57	-1.69E-46
MS.gene050149	MS.gene05969	0.819625	1.05E-52	-1.69E-46
MS.gene050669	MS.gene05969	0.815998	6.94E-52	-1.69E-46
MS.gene050961	MS.gene05969	0.815329	9.77E-52	-1.69E-46
MS.gene05861	MS.gene05969	0.998185	3.15E-258	-1.69E-46
MS.gene05862	MS.gene05969	0.939296	1.61E-99	-1.69E-46
MS.gene05969	MS.gene061045	0.803614	3.20E-49	-1.69E-46
MS.gene05969	MS.gene061047	0.805346	1.40E-49	-1.69E-46
MS.gene05969	MS.gene061682	0.843798	1.12E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05969.t1	MTR_8g104490	95.287	488	21	2	1	487	1	487	0.0	952
MS.gene05969.t1	MTR_8g104510	88.000	475	53	4	1	473	1	473	0.0	830
MS.gene05969.t1	MTR_8g104490	94.799	423	20	2	66	487	1	422	0.0	823
MS.gene05969.t1	MTR_6g083730	60.744	484	175	11	1	478	1	475	0.0	556
MS.gene05969.t1	MTR_6g083320	65.781	301	97	6	1	297	1	299	1.32e-131	388
MS.gene05969.t1	MTR_6g083320	50.413	121	49	7	361	478	297	409	1.48e-21	97.1
MS.gene05969.t1	MTR_2g011810	40.749	454	224	9	4	448	16	433	7.43e-110	339
MS.gene05969.t1	MTR_4g090970	45.052	384	199	5	4	384	15	389	9.78e-109	336
MS.gene05969.t1	MTR_4g128600	45.596	386	197	6	2	384	12	387	9.02e-108	334
MS.gene05969.t1	MTR_2g450080	41.452	427	228	8	30	440	34	454	4.11e-103	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05969.t1	AT1G73805	48.598	428	196	11	1	420	1	412	1.71e-135	399
MS.gene05969.t1	AT5G57580	47.287	387	188	7	3	384	12	387	1.98e-109	338
MS.gene05969.t1	AT4G25800	46.809	376	188	5	13	384	9	376	3.18e-107	331
MS.gene05969.t1	AT4G25800	46.809	376	188	5	13	384	9	376	3.18e-107	331
MS.gene05969.t1	AT2G18750	45.098	357	192	4	29	384	36	389	6.57e-105	326
MS.gene05969.t1	AT2G18750	45.098	357	192	4	29	384	36	389	6.57e-105	326
MS.gene05969.t1	AT2G18750	45.098	357	192	4	29	384	36	389	6.57e-105	326
MS.gene05969.t1	AT2G24300	43.117	385	210	5	4	384	3	382	1.70e-96	303
MS.gene05969.t1	AT2G24300	43.117	385	210	5	4	384	7	386	1.99e-96	303
MS.gene05969.t1	AT4G31000	43.514	370	195	7	17	382	21	380	5.92e-95	298

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Find 0 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACAACTATAGGACTAAAA+AGG	+	57350:2333-2352	MS.gene05969:intergenic	30.0%
AGTTAACTAATCTAGTTACC+TGG	-	57350:2123-2142	MS.gene05969:intron	30.0%
AGTTCACTGATAATTCTAGT+TGG	-	57350:1703-1722	MS.gene05969:CDS	30.0%
ATAACAAACCAACTATGGAA+AGG	+	57350:2408-2427	MS.gene05969:intergenic	30.0%
ATATGATTAGGTGAATGAAG+AGG	-	57350:1272-1291	MS.gene05969:intron	30.0%
ATTCTTTCTGACACAACTAT+AGG	+	57350:2343-2362	MS.gene05969:intergenic	30.0%
CACAAAAAATTGACCTCAAA+AGG	-	57350:2571-2590	MS.gene05969:CDS	30.0%
CATGCTTGCATATAAATTCA+AGG	+	57350:1925-1944	MS.gene05969:intergenic	30.0%
CGATGATCTTTAACAACAAA+AGG	+	57350:1813-1832	MS.gene05969:intergenic	30.0%
CTAGAGAAAATTGGTAAAGA+TGG	-	57350:2541-2560	MS.gene05969:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
57350	gene	707	3586	707	ID=MS.gene05969
57350	mRNA	707	3586	707	ID=MS.gene05969.t1;Parent=MS.gene05969
57350	exon	3492	3586	3492	ID=MS.gene05969.t1.exon1;Parent=MS.gene05969.t1
57350	CDS	3492	3586	3492	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1
57350	exon	3208	3283	3208	ID=MS.gene05969.t1.exon2;Parent=MS.gene05969.t1
57350	CDS	3208	3283	3208	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1
57350	exon	2453	3011	2453	ID=MS.gene05969.t1.exon3;Parent=MS.gene05969.t1
57350	CDS	2453	3011	2453	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1
57350	exon	1639	1799	1639	ID=MS.gene05969.t1.exon4;Parent=MS.gene05969.t1
57350	CDS	1639	1799	1639	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1
57350	exon	1321	1518	1321	ID=MS.gene05969.t1.exon5;Parent=MS.gene05969.t1
57350	CDS	1321	1518	1321	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1
57350	exon	1133	1232	1133	ID=MS.gene05969.t1.exon6;Parent=MS.gene05969.t1
57350	CDS	1133	1232	1133	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1
57350	exon	707	981	707	ID=MS.gene05969.t1.exon7;Parent=MS.gene05969.t1
57350	CDS	707	981	707	ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1

Gene Sequence

>MS.gene05969

ATGGTTGCAAAACGTTTTCTTGATGATTTTAATGAAGACAAAGTCAAACCAAATGACAAACGCATGAGAACTACGACAACATCTTCTTTTGCTTCGTATGTTTTTGTCCCTTAAACCAATCAAACAACCCAATATTCATTTTATTATGTTCTTTCACTTATTTAATTTTATAAAACTTATTTTTGCTTAATGTTTTTTACTAGTATTTTATGTTTCAACTATTACATAGTTTTAATTAAATTAAATGTTGCATAATATATATCCTCTACTGTACATTAATTACTCTCAATTCTCATGTGACAGGGTAATAGGAGAAATTGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTAAGTAACCATTCAACTTTACCATAATTTCGAAATGAAATTAATGTCAACCATACCTTAATTAAATTTATCAGAAACAAATAGATGAAAGCTTCTGAATTTTTTTTATATGTTATTTTTTTTTAAAGAAAAAGTTTTAACAAACGTGCCTTCAATATGAAAATGTTTACAATTCTTTCTATTTATATATGATTAGGTGAATGAAGAGGTGGAAAGAGCAATGAGACAATGTTATCCACCACGATCAATAACAAAGTCACCTTCATTGAGACTTCAAGCAATGGAAGAACCATTAAGTTTTCAATTCATGTTCAAAAATAAACTTTCACTTCCAATATTCACCGGTAGTAGAATACTAGACATGGATGGAAACTCAATCAATGTGATTCTTGTTGACAAAAGCAATGACCAAATAGTCCCTACAAGTCTACCTCACCCAATCAAGATAGAAATTGTAGTTCTTGATGGAGATTTTCCTCCTAGTAAAAAGGAATCATCATGGACTAGTGAGGAATTCAATAGCAATATTGTGAAAGAGAGAAATGGGAAAAGACCATTGCTTACAGGAGAATTAAATCTTACTATGAGGGATGGAATTGCACCAATTGGGGATATTGAGTTCACTGATAATTCTAGTTGGATACGTAGTAGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCTGGGACTAATCAAAGTGTCCGAATTCTTGAAGGCATGACTGAACCTTTTGTTGTTAAAGATCATCGCGGAGAATGTGAGTTTTCTTTTCTTTTTCATTTATCAATTCGATATAATAAATAATTCATAGAGAAAAGATGATATGCAAATTCAAGTTCCTTGAATTTATATGCAAGCATGATTGATTAGATTGATTATAATATGTATAGGTTTTTTTTTCTGATTTTATTTTTATGTTTTCTTTCTTGGTCAAATTAATATGAATAGGTTTTTTTTTTTCTGATTTTATTTCTGTGTTCTTTCTTGGTCAAATGATTACATAGAAAATGACCCTTTTCAGATGTATGCATCACATTGAAGTTAACTAATCTAGTTACCTGGTATGTACTTGGTGGTAATTGCACCTTTAATTAAACATTGATGTGTTGTTAATAACTGCTGTTAATTAACAATTAGTTGGTAACAAGTCTGCAATTTTTTGTTTAGTTTATTTTAAGGTTGTTAAGATATAAATAAAGGATTAGAGAGGGTCTCTAGAAAGAAAAGCATCCGGTTCCAGGGTCAACCTTTTTAGTCCTATAGTTGTGTCAGAAAGAATTATGTTATTTCCACATTGGTACCATAGGCATTTTATTTTCACCCTTTCCATAGTTGGTTTGTTATATCTTGGTTAAGGAGTATGACTCATACAATTGTTTGCTAAAATTTAAATTGTTCATACAAATGTAGTGTACAAGAAACACCACCCACCAAATCTAAAGGACGAAGTGTGGCGTCTAGAGAAAATTGGTAAAGATGGAGCTTTCCACAAAAAATTGACCTCAAAAGGGATTACCACAGTGCAAGAGTTTCTCAAGTTGTCCGTAGTTGATCCTCATAGGCTCAGAAAGGTACATATCCATCTTCTAACTCAAAAAAAAAAAAAAAAAATACGATTCATTATGAATGTGTCAATAAATGGTTTTCTATATATGAAAAATAAGTTAATGTTTATATGGTATTGCAATCAGATTTTAGGCATTGGAATGTCAGAGAAAATGTGGGATGTGACAATTAAACATGCAAAGACTTGTGTAATGGGAAACAAACGTTATGTCTACCGTGGACCCCAATTTATCATCCATTTGAATGCAATATGCCAAATGGTTAGAGCTAACATCAATGGCCAAACCATTCCCATCCGAGACATTAACAACACATTGGGCAAGGTACATTTATTTATACTAAAATTGTCCTTCTACTTCTACCTTTTTCTATGCATTGATTTTTAACCTATATAGTTCATTTAATTTGCAGAGCTACATACAAAACTATGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGAAGTTTTGAATGACAACGTTGCTTTGTTAACTCAAGGTATATTCTAGTAATCTATTACTACATGTGTAACTACAATGTGACTATTGTGCACAACTATTTTCTAAAATTAATTTTCCAATTGAAATTCAGCGTGACATAATGAATTCAATTATATGAATTGATTTGTTTTTTGTATATCACACGACAGGTGGAACCGTGGAGCAATTTCAAAGCAATAATCATCAAGGATCACTTATAACATATGATCAAAACAACTATTTTGGTGATACTCTCGAGACTCACAACTATGTATCAAACAATAACAATGGACAAATAGGTTGCATCGAGGGGCCACCATTTCCCACATCACCATTCATGAATGACATCATACCTTATAGCTTCTTAGATTCACAATCAGACGGTGGTGATCTAACGCCTTCAAGTTCAGGACCAATCGTTGATAGAGCTTCAAGGTGGCATTAG

Protein sequence

>MS.gene05969.t1

MVAKRFLDDFNEDKVKPNDKRMRTTTTSSFASVIGEIVMVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITKSPSLRLQAMEEPLSFQFMFKNKLSLPIFTGSRILDMDGNSINVILVDKSNDQIVPTSLPHPIKIEIVVLDGDFPPSKKESSWTSEEFNSNIVKERNGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPFVVKDHRGELYKKHHPPNLKDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPHRLRKILGIGMSEKMWDVTIKHAKTCVMGNKRYVYRGPQFIIHLNAICQMVRANINGQTIPIRDINNTLGKSYIQNYVREAYARWNELEEIDEVLNDNVALLTQGGTVEQFQSNNHQGSLITYDQNNYFGDTLETHNYVSNNNNGQIGCIEGPPFPTSPFMNDIIPYSFLDSQSDGGDLTPSSSGPIVDRASRWH