Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05969.t1 | RHN43745.1 | 95.3 | 488 | 21 | 2 | 1 | 487 | 72 | 558 | 6.50E-267 | 929.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05969.t1 | Q9C9T2 | 52.7 | 351 | 151 | 7 | 75 | 420 | 72 | 412 | 1.2e-99 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05969.t1 | G7L9S2 | 95.3 | 488 | 21 | 2 | 1 | 487 | 1 | 487 | 4.7e-267 | 929.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene05969 | 0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene050148 | MS.gene05969 | 0.840104 | 1.06E-57 | -1.69E-46 |
| MS.gene050149 | MS.gene05969 | 0.819625 | 1.05E-52 | -1.69E-46 |
| MS.gene050669 | MS.gene05969 | 0.815998 | 6.94E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene05969 | 0.815329 | 9.77E-52 | -1.69E-46 |
| MS.gene05861 | MS.gene05969 | 0.998185 | 3.15E-258 | -1.69E-46 |
| MS.gene05862 | MS.gene05969 | 0.939296 | 1.61E-99 | -1.69E-46 |
| MS.gene05969 | MS.gene061045 | 0.803614 | 3.20E-49 | -1.69E-46 |
| MS.gene05969 | MS.gene061047 | 0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene05969 | MS.gene061682 | 0.843798 | 1.12E-58 | -1.69E-46 |
| MS.gene05969 | MS.gene063094 | 0.829882 | 4.01E-55 | -1.69E-46 |
| MS.gene05969 | MS.gene063690 | 0.936582 | 1.38E-97 | -1.69E-46 |
| MS.gene05969 | MS.gene06539 | 0.838025 | 3.67E-57 | -1.69E-46 |
| MS.gene05969 | MS.gene06784 | 0.848972 | 4.36E-60 | -1.69E-46 |
| MS.gene05969 | MS.gene072560 | 0.803467 | 3.44E-49 | -1.69E-46 |
| MS.gene05969 | MS.gene09747 | 0.833093 | 6.50E-56 | -1.69E-46 |
| MS.gene05969 | MS.gene21214 | 0.836625 | 8.38E-57 | -1.69E-46 |
| MS.gene05969 | MS.gene25879 | 0.862821 | 3.86E-64 | -1.69E-46 |
| MS.gene05969 | MS.gene36865 | 0.815683 | 8.16E-52 | -1.69E-46 |
| MS.gene05969 | MS.gene38123 | 0.804431 | 2.17E-49 | -1.69E-46 |
| MS.gene05969 | MS.gene56725 | 0.852127 | 5.66E-61 | -1.69E-46 |
| MS.gene05969 | MS.gene57124 | 0.806864 | 6.69E-50 | -1.69E-46 |
| MS.gene05969 | MS.gene63435 | 0.811649 | 6.30E-51 | -1.69E-46 |
| MS.gene05969 | MS.gene68141 | 0.815068 | 1.12E-51 | -1.69E-46 |
| MS.gene05969 | MS.gene73869 | 0.824487 | 7.86E-54 | -1.69E-46 |
| MS.gene05969 | MS.gene79758 | 0.808532 | 2.96E-50 | -1.69E-46 |
| MS.gene05969 | MS.gene95287 | 0.818707 | 1.70E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05969.t1 | MTR_8g104490 | 95.287 | 488 | 21 | 2 | 1 | 487 | 1 | 487 | 0.0 | 952 |
| MS.gene05969.t1 | MTR_8g104510 | 88.000 | 475 | 53 | 4 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene05969.t1 | MTR_8g104490 | 94.799 | 423 | 20 | 2 | 66 | 487 | 1 | 422 | 0.0 | 823 |
| MS.gene05969.t1 | MTR_6g083730 | 60.744 | 484 | 175 | 11 | 1 | 478 | 1 | 475 | 0.0 | 556 |
| MS.gene05969.t1 | MTR_6g083320 | 65.781 | 301 | 97 | 6 | 1 | 297 | 1 | 299 | 1.32e-131 | 388 |
| MS.gene05969.t1 | MTR_6g083320 | 50.413 | 121 | 49 | 7 | 361 | 478 | 297 | 409 | 1.48e-21 | 97.1 |
| MS.gene05969.t1 | MTR_2g011810 | 40.749 | 454 | 224 | 9 | 4 | 448 | 16 | 433 | 7.43e-110 | 339 |
| MS.gene05969.t1 | MTR_4g090970 | 45.052 | 384 | 199 | 5 | 4 | 384 | 15 | 389 | 9.78e-109 | 336 |
| MS.gene05969.t1 | MTR_4g128600 | 45.596 | 386 | 197 | 6 | 2 | 384 | 12 | 387 | 9.02e-108 | 334 |
| MS.gene05969.t1 | MTR_2g450080 | 41.452 | 427 | 228 | 8 | 30 | 440 | 34 | 454 | 4.11e-103 | 320 |
| MS.gene05969.t1 | MTR_4g106810 | 48.101 | 316 | 154 | 5 | 12 | 326 | 8 | 314 | 1.64e-89 | 284 |
| MS.gene05969.t1 | MTR_7g112000 | 34.177 | 395 | 235 | 9 | 50 | 433 | 44 | 424 | 1.48e-55 | 194 |
| MS.gene05969.t1 | MTR_7g111980 | 35.777 | 341 | 190 | 10 | 50 | 379 | 59 | 381 | 1.83e-47 | 173 |
| MS.gene05969.t1 | MTR_7g111980 | 37.500 | 296 | 170 | 8 | 92 | 379 | 10 | 298 | 7.34e-45 | 164 |
| MS.gene05969.t1 | MTR_7g111960 | 34.593 | 344 | 200 | 10 | 50 | 381 | 60 | 390 | 3.50e-43 | 161 |
| MS.gene05969.t1 | MTR_6g083810 | 55.556 | 135 | 55 | 5 | 1 | 131 | 1 | 134 | 1.51e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05969.t1 | AT1G73805 | 48.598 | 428 | 196 | 11 | 1 | 420 | 1 | 412 | 1.71e-135 | 399 |
| MS.gene05969.t1 | AT5G57580 | 47.287 | 387 | 188 | 7 | 3 | 384 | 12 | 387 | 1.98e-109 | 338 |
| MS.gene05969.t1 | AT4G25800 | 46.809 | 376 | 188 | 5 | 13 | 384 | 9 | 376 | 3.18e-107 | 331 |
| MS.gene05969.t1 | AT4G25800 | 46.809 | 376 | 188 | 5 | 13 | 384 | 9 | 376 | 3.18e-107 | 331 |
| MS.gene05969.t1 | AT2G18750 | 45.098 | 357 | 192 | 4 | 29 | 384 | 36 | 389 | 6.57e-105 | 326 |
| MS.gene05969.t1 | AT2G18750 | 45.098 | 357 | 192 | 4 | 29 | 384 | 36 | 389 | 6.57e-105 | 326 |
| MS.gene05969.t1 | AT2G18750 | 45.098 | 357 | 192 | 4 | 29 | 384 | 36 | 389 | 6.57e-105 | 326 |
| MS.gene05969.t1 | AT2G24300 | 43.117 | 385 | 210 | 5 | 4 | 384 | 3 | 382 | 1.70e-96 | 303 |
| MS.gene05969.t1 | AT2G24300 | 43.117 | 385 | 210 | 5 | 4 | 384 | 7 | 386 | 1.99e-96 | 303 |
| MS.gene05969.t1 | AT4G31000 | 43.514 | 370 | 195 | 7 | 17 | 382 | 21 | 380 | 5.92e-95 | 298 |
| MS.gene05969.t1 | AT5G62570 | 39.387 | 424 | 227 | 10 | 19 | 436 | 21 | 420 | 5.70e-90 | 284 |
| MS.gene05969.t1 | AT5G62570 | 39.100 | 422 | 233 | 9 | 21 | 436 | 2 | 405 | 3.27e-89 | 281 |
| MS.gene05969.t1 | AT5G62570 | 43.642 | 346 | 175 | 7 | 19 | 358 | 21 | 352 | 7.00e-89 | 277 |
| MS.gene05969.t1 | AT2G24300 | 43.030 | 330 | 183 | 3 | 58 | 384 | 8 | 335 | 4.73e-85 | 272 |
| MS.gene05969.t1 | AT5G62570 | 44.369 | 293 | 147 | 6 | 19 | 309 | 21 | 299 | 8.95e-71 | 227 |
| MS.gene05969.t1 | AT4G31000 | 39.514 | 329 | 172 | 7 | 58 | 382 | 54 | 359 | 1.66e-70 | 234 |
| MS.gene05969.t1 | AT5G26920 | 35.422 | 367 | 205 | 10 | 29 | 385 | 24 | 368 | 1.02e-67 | 223 |
| MS.gene05969.t1 | AT5G26920 | 35.422 | 367 | 205 | 10 | 29 | 385 | 24 | 368 | 1.03e-66 | 224 |
| MS.gene05969.t1 | AT5G26920 | 35.150 | 367 | 198 | 11 | 29 | 385 | 24 | 360 | 1.08e-63 | 216 |
Find 0 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAGTTAATGTTTATA+TGG | - | 57350:2740-2759 | MS.gene05969:CDS | 10.0% |
| !! | AACATAATAAAATGAATATT+GGG | + | 57350:837-856 | MS.gene05969:intergenic | 10.0% |
| !!! | TTTTTGTTTAGTTTATTTTA+AGG | - | 57350:2240-2259 | MS.gene05969:intron | 10.0% |
| !! | AGATTGATTATAATATGTAT+AGG | - | 57350:1952-1971 | MS.gene05969:intron | 15.0% |
| !! | CTTTCTATTTATATATGATT+AGG | - | 57350:1260-1279 | MS.gene05969:intron | 15.0% |
| !! | GAACATAATAAAATGAATAT+TGG | + | 57350:838-857 | MS.gene05969:intergenic | 15.0% |
| !! | GTTTCTGATAAATTTAATTA+AGG | + | 57350:1144-1163 | MS.gene05969:intergenic | 15.0% |
| !! | TGATAAATTTAATTAAGGTA+TGG | + | 57350:1139-1158 | MS.gene05969:intergenic | 15.0% |
| !! | TTAATTTCATTTCGAAATTA+TGG | + | 57350:1110-1129 | MS.gene05969:intergenic | 15.0% |
| !!! | TATTTTTATGTTTTCTTTCT+TGG | - | 57350:1991-2010 | MS.gene05969:intron | 15.0% |
| !! | AAAAATCAATGCATAGAAAA+AGG | + | 57350:3014-3033 | MS.gene05969:intergenic | 20.0% |
| !! | AACATGAATTGAAAACTTAA+TGG | + | 57350:1378-1397 | MS.gene05969:intergenic | 20.0% |
| !! | ACACATCAATGTTTAATTAA+AGG | + | 57350:2171-2190 | MS.gene05969:intergenic | 20.0% |
| !! | AGAATTAAATCTTACTATGA+GGG | - | 57350:1653-1672 | MS.gene05969:CDS | 20.0% |
| !! | ATATAAATAAAGGATTAGAG+AGG | - | 57350:2271-2290 | MS.gene05969:intron | 20.0% |
| !! | ATTATGAATGTGTCAATAAA+TGG | - | 57350:2703-2722 | MS.gene05969:CDS | 20.0% |
| !! | ATTCAAATGGATGATAAATT+GGG | + | 57350:2875-2894 | MS.gene05969:intergenic | 20.0% |
| !! | GCAAATTAAATGAACTATAT+AGG | + | 57350:3039-3058 | MS.gene05969:intergenic | 20.0% |
| !! | GGTTGTTAAGATATAAATAA+AGG | - | 57350:2261-2280 | MS.gene05969:intron | 20.0% |
| !! | TATAAATAAAGGATTAGAGA+GGG | - | 57350:2272-2291 | MS.gene05969:intron | 20.0% |
| !! | TATGTATCAAACAATAACAA+TGG | - | 57350:3410-3429 | MS.gene05969:intron | 20.0% |
| !! | TTGGTCAAATTAATATGAAT+AGG | - | 57350:2010-2029 | MS.gene05969:intron | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | - | 57350:3365-3384 | MS.gene05969:intron | 20.0% |
| !!! | TGTAAACATTTTCATATTGA+AGG | + | 57350:1237-1256 | MS.gene05969:intergenic | 20.0% |
| !!! | TTTTTTTTTGAGTTAGAAGA+TGG | + | 57350:2666-2685 | MS.gene05969:intergenic | 20.0% |
| ! | AACAATAACAATGGACAAAT+AGG | - | 57350:3419-3438 | MS.gene05969:intron | 25.0% |
| ! | AAGATATAACAAACCAACTA+TGG | + | 57350:2413-2432 | MS.gene05969:intergenic | 25.0% |
| ! | AATATTGTGAAAGAGAGAAA+TGG | - | 57350:1609-1628 | MS.gene05969:intron | 25.0% |
| ! | ACAAAAAATTGACCTCAAAA+GGG | - | 57350:2572-2591 | MS.gene05969:CDS | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | + | 57350:1525-1544 | MS.gene05969:intergenic | 25.0% |
| ! | ATAGAAATTGTAGTTCTTGA+TGG | - | 57350:1531-1550 | MS.gene05969:intron | 25.0% |
| ! | ATATTGTGAAAGAGAGAAAT+GGG | - | 57350:1610-1629 | MS.gene05969:intron | 25.0% |
| ! | CATTCAAATGGATGATAAAT+TGG | + | 57350:2876-2895 | MS.gene05969:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | + | 57350:1524-1543 | MS.gene05969:intergenic | 25.0% |
| ! | GAAATTATGGTAAAGTTGAA+TGG | + | 57350:1097-1116 | MS.gene05969:intergenic | 25.0% |
| ! | GAGAATTAAATCTTACTATG+AGG | - | 57350:1652-1671 | MS.gene05969:CDS | 25.0% |
| ! | GCTGTTAATTAACAATTAGT+TGG | - | 57350:2202-2221 | MS.gene05969:intron | 25.0% |
| ! | TTCAAATGGATGATAAATTG+GGG | + | 57350:2874-2893 | MS.gene05969:intergenic | 25.0% |
| ! | TTTCAAAGCAATAATCATCA+AGG | - | 57350:3329-3348 | MS.gene05969:intron | 25.0% |
| !!! | ATAGTTGGTTTGTTATATCT+TGG | - | 57350:2412-2431 | MS.gene05969:intron | 25.0% |
| !!! | GAATTATGTTATTTCCACAT+TGG | - | 57350:2359-2378 | MS.gene05969:intron | 25.0% |
| !!! | TTTATTTCTGTGTTCTTTCT+TGG | - | 57350:2049-2068 | MS.gene05969:intron | 25.0% |
| ACACAACTATAGGACTAAAA+AGG | + | 57350:2333-2352 | MS.gene05969:intergenic | 30.0% | |
| AGTTAACTAATCTAGTTACC+TGG | - | 57350:2123-2142 | MS.gene05969:intron | 30.0% | |
| AGTTCACTGATAATTCTAGT+TGG | - | 57350:1703-1722 | MS.gene05969:CDS | 30.0% | |
| ATAACAAACCAACTATGGAA+AGG | + | 57350:2408-2427 | MS.gene05969:intergenic | 30.0% | |
| ATATGATTAGGTGAATGAAG+AGG | - | 57350:1272-1291 | MS.gene05969:intron | 30.0% | |
| ATTCTTTCTGACACAACTAT+AGG | + | 57350:2343-2362 | MS.gene05969:intergenic | 30.0% | |
| CACAAAAAATTGACCTCAAA+AGG | - | 57350:2571-2590 | MS.gene05969:CDS | 30.0% | |
| CATGCTTGCATATAAATTCA+AGG | + | 57350:1925-1944 | MS.gene05969:intergenic | 30.0% | |
| CGATGATCTTTAACAACAAA+AGG | + | 57350:1813-1832 | MS.gene05969:intergenic | 30.0% | |
| CTAGAGAAAATTGGTAAAGA+TGG | - | 57350:2541-2560 | MS.gene05969:CDS | 30.0% | |
| CTAGTAAAAAGGAATCATCA+TGG | - | 57350:1565-1584 | MS.gene05969:intron | 30.0% | |
| GAGTAATTAATGTACAGTAG+AGG | + | 57350:972-991 | MS.gene05969:intergenic | 30.0% | |
| GGTAATAGGAGAAATTGTTA+TGG | - | 57350:1010-1029 | MS.gene05969:intron | 30.0% | |
| TAACAAACCAACTATGGAAA+GGG | + | 57350:2407-2426 | MS.gene05969:intergenic | 30.0% | |
| TAGAAAAAGGTAGAAGTAGA+AGG | + | 57350:3001-3020 | MS.gene05969:intergenic | 30.0% | |
| TGTGAATCTAAGAAGCTATA+AGG | + | 57350:3497-3516 | MS.gene05969:intergenic | 30.0% | |
| TTAAATCTTACTATGAGGGA+TGG | - | 57350:1657-1676 | MS.gene05969:CDS | 30.0% | |
| TTCTTAGATTCACAATCAGA+CGG | - | 57350:3503-3522 | MS.gene05969:CDS | 30.0% | |
| TTTAATTCTCCTGTAAGCAA+TGG | + | 57350:1642-1661 | MS.gene05969:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | - | 57350:2888-2907 | MS.gene05969:CDS | 30.0% | |
| TTTGGCATATTGCATTCAAA+TGG | + | 57350:2888-2907 | MS.gene05969:intergenic | 30.0% | |
| ! | AGATTTTCCTCCTAGTAAAA+AGG | - | 57350:1554-1573 | MS.gene05969:intron | 30.0% |
| ! | CATGATGATTCCTTTTTACT+AGG | + | 57350:1567-1586 | MS.gene05969:intergenic | 30.0% |
| ! | TGAATATTGGGTTGTTTGAT+TGG | + | 57350:825-844 | MS.gene05969:intergenic | 30.0% |
| ! | TGGTATTGCAATCAGATTTT+AGG | - | 57350:2760-2779 | MS.gene05969:CDS | 30.0% |
| !! | GGTTTGTTATATCTTGGTTA+AGG | - | 57350:2418-2437 | MS.gene05969:intron | 30.0% |
| !! | TTTGTTGTTAAAGATCATCG+CGG | - | 57350:1813-1832 | MS.gene05969:intron | 30.0% |
| !!! | CTTTTGAGGTCAATTTTTTG+TGG | + | 57350:2573-2592 | MS.gene05969:intergenic | 30.0% |
| !!! | TTTTTTGTATATCACACGAC+AGG | - | 57350:3290-3309 | MS.gene05969:intron | 30.0% |
| ACATGCAAAGACTTGTGTAA+TGG | - | 57350:2822-2841 | MS.gene05969:CDS | 35.0% | |
| AGTAGAATACTAGACATGGA+TGG | - | 57350:1432-1451 | MS.gene05969:CDS | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | - | 57350:3090-3109 | MS.gene05969:intron | 35.0% | |
| ATGGTTAGAGCTAACATCAA+TGG | - | 57350:2907-2926 | MS.gene05969:CDS | 35.0% | |
| ATGTCACGCTGAATTTCAAT+TGG | + | 57350:3242-3261 | MS.gene05969:intergenic | 35.0% | |
| ATTCTACTACCGGTGAATAT+TGG | + | 57350:1420-1439 | MS.gene05969:intergenic | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | + | 57350:1348-1367 | MS.gene05969:intergenic | 35.0% | |
| ATTTCTATCTTGATTGGGTG+AGG | + | 57350:1519-1538 | MS.gene05969:intergenic | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | - | 57350:2823-2842 | MS.gene05969:CDS | 35.0% | |
| CATGTCTAGTATTCTACTAC+CGG | + | 57350:1430-1449 | MS.gene05969:intergenic | 35.0% | |
| CGAGACATTAACAACACATT+GGG | - | 57350:2946-2965 | MS.gene05969:CDS | 35.0% | |
| CTTACCACTCTTCTAAGTAA+AGG | + | 57350:1071-1090 | MS.gene05969:intergenic | 35.0% | |
| CTTTCACTTCCAATATTCAC+CGG | - | 57350:1408-1427 | MS.gene05969:CDS | 35.0% | |
| GGGTGAAAATAAAATGCCTA+TGG | + | 57350:2387-2406 | MS.gene05969:intergenic | 35.0% | |
| GGTATGATGTCATTCATGAA+TGG | + | 57350:3476-3495 | MS.gene05969:intergenic | 35.0% | |
| GTGATGCATACATCTGAAAA+GGG | + | 57350:2098-2117 | MS.gene05969:intergenic | 35.0% | |
| TATTTCCACATTGGTACCAT+AGG | - | 57350:2368-2387 | MS.gene05969:intron | 35.0% | |
| TGGAATGTCAGAGAAAATGT+GGG | - | 57350:2786-2805 | MS.gene05969:CDS | 35.0% | |
| TGTGATGCATACATCTGAAA+AGG | + | 57350:2099-2118 | MS.gene05969:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | - | 57350:1347-1366 | MS.gene05969:CDS | 35.0% | |
| TTGGAATGTCAGAGAAAATG+TGG | - | 57350:2785-2804 | MS.gene05969:CDS | 35.0% | |
| ! | AACATGCAAAACCTTTTCTC+TGG | - | 57350:1038-1057 | MS.gene05969:intron | 35.0% |
| ! | AACGTTGCTTTGTTAACTCA+AGG | - | 57350:3139-3158 | MS.gene05969:intron | 35.0% |
| ! | ATTTTCACCCTTTCCATAGT+TGG | - | 57350:2397-2416 | MS.gene05969:intron | 35.0% |
| ! | CCAATGTGTTGTTAATGTCT+CGG | + | 57350:2948-2967 | MS.gene05969:intergenic | 35.0% |
| ! | GATGATTCCTTTTTACTAGG+AGG | + | 57350:1564-1583 | MS.gene05969:intergenic | 35.0% |
| ! | TCATTCATGAATGGTGATGT+GGG | + | 57350:3467-3486 | MS.gene05969:intergenic | 35.0% |
| ! | TGCAATCAGATTTTAGGCAT+TGG | - | 57350:2766-2785 | MS.gene05969:CDS | 35.0% |
| !! | ATTGCTTTGAAATTGCTCCA+CGG | + | 57350:3321-3340 | MS.gene05969:intergenic | 35.0% |
| !! | GGGTTGTTTGATTGGTTTAA+GGG | + | 57350:817-836 | MS.gene05969:intergenic | 35.0% |
| !! | TCTCTAGAAAGAAAAGCATC+CGG | - | 57350:2295-2314 | MS.gene05969:intron | 35.0% |
| !! | TGATGTTAGCTCTAACCATT+TGG | + | 57350:2906-2925 | MS.gene05969:intergenic | 35.0% |
| !! | TGGGTTGTTTGATTGGTTTA+AGG | + | 57350:818-837 | MS.gene05969:intergenic | 35.0% |
| AAATGCCTATGGTACCAATG+TGG | + | 57350:2376-2395 | None:intergenic | 40.0% | |
| AACAAACGTTATGTCTACCG+TGG | - | 57350:2847-2866 | MS.gene05969:CDS | 40.0% | |
| ACTCTCAATTCTCATGTGAC+AGG | - | 57350:988-1007 | MS.gene05969:intron | 40.0% | |
| ACTTCGTCCTTTAGATTTGG+TGG | + | 57350:2514-2533 | MS.gene05969:intergenic | 40.0% | |
| ATTACCACCAAGTACATACC+AGG | + | 57350:2144-2163 | MS.gene05969:intergenic | 40.0% | |
| CAAATCTAAAGGACGAAGTG+TGG | - | 57350:2515-2534 | MS.gene05969:CDS | 40.0% | |
| CACACTTCGTCCTTTAGATT+TGG | + | 57350:2517-2536 | MS.gene05969:intergenic | 40.0% | |
| CAGTCATGCCTTCAAGAATT+CGG | + | 57350:1788-1807 | MS.gene05969:intergenic | 40.0% | |
| CATTAACAACACATTGGGCA+AGG | - | 57350:2951-2970 | MS.gene05969:CDS | 40.0% | |
| CCGAGACATTAACAACACAT+TGG | - | 57350:2945-2964 | MS.gene05969:CDS | 40.0% | |
| CGGTAGTAGAATACTAGACA+TGG | - | 57350:1428-1447 | MS.gene05969:CDS | 40.0% | |
| CTAGTTACCTGGTATGTACT+TGG | - | 57350:2134-2153 | MS.gene05969:intron | 40.0% | |
| CTCTCAATTCTCATGTGACA+GGG | - | 57350:989-1008 | MS.gene05969:intron | 40.0% | |
| CTTGAAGCTCTATCAACGAT+TGG | + | 57350:3557-3576 | MS.gene05969:intergenic | 40.0% | |
| GGAACCTTTACTTAGAAGAG+TGG | - | 57350:1064-1083 | MS.gene05969:intron | 40.0% | |
| GTAGACTTGTAGGGACTATT+TGG | + | 57350:1497-1516 | MS.gene05969:intergenic | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | + | 57350:1690-1709 | MS.gene05969:intergenic | 40.0% | |
| GTTCTCATGCGTTTGTCATT+TGG | + | 57350:758-777 | MS.gene05969:intergenic | 40.0% | |
| TGATTAGGTGAATGAAGAGG+TGG | - | 57350:1275-1294 | MS.gene05969:intron | 40.0% | |
| TTAGATTCACAATCAGACGG+TGG | - | 57350:3506-3525 | MS.gene05969:CDS | 40.0% | |
| TTCTCATGTGACAGGGTAAT+AGG | - | 57350:996-1015 | MS.gene05969:intron | 40.0% | |
| TTTGTATATCACACGACAGG+TGG | - | 57350:3293-3312 | MS.gene05969:intron | 40.0% | |
| ! | ATGAATGGTGATGTGGGAAA+TGG | + | 57350:3461-3480 | MS.gene05969:intergenic | 40.0% |
| ! | CAAAGTGTCCGAATTCTTGA+AGG | - | 57350:1777-1796 | MS.gene05969:CDS | 40.0% |
| ! | CAATCGTTGATAGAGCTTCA+AGG | - | 57350:3555-3574 | MS.gene05969:CDS | 40.0% |
| ! | CTTCGTCCTTTAGATTTGGT+GGG | + | 57350:2513-2532 | MS.gene05969:intergenic | 40.0% |
| ! | GTCATTCATGAATGGTGATG+TGG | + | 57350:3468-3487 | MS.gene05969:intergenic | 40.0% |
| ! | GTGTTGTTAATGTCTCGGAT+GGG | + | 57350:2943-2962 | MS.gene05969:intergenic | 40.0% |
| ! | TGAGAGAAGCATATGCTAGA+TGG | - | 57350:3080-3099 | MS.gene05969:intron | 40.0% |
| ! | TGTGTTGTTAATGTCTCGGA+TGG | + | 57350:2944-2963 | MS.gene05969:intergenic | 40.0% |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | - | 57350:1748-1767 | MS.gene05969:CDS | 40.0% |
| !! | GACTTTGTTATTGATCGTGG+TGG | + | 57350:1324-1343 | MS.gene05969:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | + | 57350:1327-1346 | MS.gene05969:intergenic | 40.0% |
| AAAAAGGTTGACCCTGGAAC+CGG | + | 57350:2317-2336 | None:intergenic | 45.0% | |
| AAGGTTCCAAGCCAGAGAAA+AGG | + | 57350:1052-1071 | MS.gene05969:intergenic | 45.0% | |
| ACACCACCCACCAAATCTAA+AGG | - | 57350:2504-2523 | MS.gene05969:CDS | 45.0% | |
| AGGACTAAAAAGGTTGACCC+TGG | + | 57350:2323-2342 | MS.gene05969:intergenic | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | - | 57350:1672-1691 | MS.gene05969:CDS | 45.0% | |
| ATTGGGTGAGGTAGACTTGT+AGG | + | 57350:1507-1526 | MS.gene05969:intergenic | 45.0% | |
| CTTGAGAAACTCTTGCACTG+TGG | + | 57350:2602-2621 | MS.gene05969:intergenic | 45.0% | |
| GACAAATAGGTTGCATCGAG+GGG | - | 57350:3432-3451 | MS.gene05969:intron | 45.0% | |
| GAGCCTATGAGGATCAACTA+CGG | + | 57350:2629-2648 | MS.gene05969:intergenic | 45.0% | |
| GGACAAATAGGTTGCATCGA+GGG | - | 57350:3431-3450 | MS.gene05969:intron | 45.0% | |
| GGATGATAAATTGGGGTCCA+CGG | + | 57350:2867-2886 | MS.gene05969:intergenic | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | - | 57350:1674-1693 | MS.gene05969:CDS | 45.0% | |
| GGGAAAAGACCATTGCTTAC+AGG | - | 57350:1630-1649 | MS.gene05969:intron | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | - | 57350:1673-1692 | MS.gene05969:CDS | 45.0% | |
| GTGTGGCGTCTAGAGAAAAT+TGG | - | 57350:2532-2551 | MS.gene05969:CDS | 45.0% | |
| GTTAATGTCTCGGATGGGAA+TGG | + | 57350:2938-2957 | MS.gene05969:intergenic | 45.0% | |
| GTTACCTGGTATGTACTTGG+TGG | - | 57350:2137-2156 | MS.gene05969:intron | 45.0% | |
| TGATCCTCATAGGCTCAGAA+AGG | - | 57350:2633-2652 | MS.gene05969:CDS | 45.0% | |
| TGGACAAATAGGTTGCATCG+AGG | - | 57350:3430-3449 | MS.gene05969:intron | 45.0% | |
| TGTACCTTTCTGAGCCTATG+AGG | + | 57350:2640-2659 | MS.gene05969:intergenic | 45.0% | |
| TGTCCGTAGTTGATCCTCAT+AGG | - | 57350:2623-2642 | MS.gene05969:CDS | 45.0% | |
| TTGGGTGAGGTAGACTTGTA+GGG | + | 57350:1506-1525 | MS.gene05969:intergenic | 45.0% | |
| ! | AATGGTGATGTGGGAAATGG+TGG | + | 57350:3458-3477 | MS.gene05969:intergenic | 45.0% |
| ! | ACGATTGGTCCTGAACTTGA+AGG | + | 57350:3542-3561 | MS.gene05969:intergenic | 45.0% |
| ! | CACTGTGGTAATCCCTTTTG+AGG | + | 57350:2587-2606 | MS.gene05969:intergenic | 45.0% |
| ! | GATCTAACGCCTTCAAGTTC+AGG | - | 57350:3530-3549 | MS.gene05969:CDS | 45.0% |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | - | 57350:1043-1062 | MS.gene05969:intron | 45.0% |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | - | 57350:1747-1766 | MS.gene05969:CDS | 45.0% |
| ! | TCGTTGATAGAGCTTCAAGG+TGG | - | 57350:3558-3577 | MS.gene05969:CDS | 45.0% |
| ! | TGCTAGATGGAATGAGTTGG+AGG | - | 57350:3093-3112 | MS.gene05969:intron | 45.0% |
| !! | AAAGAAAAGCATCCGGTTCC+AGG | - | 57350:2302-2321 | MS.gene05969:intron | 45.0% |
| !! | AAGAAAAGCATCCGGTTCCA+GGG | - | 57350:2303-2322 | MS.gene05969:intron | 45.0% |
| !! | GGAATCATCATGGACTAGTG+AGG | - | 57350:1575-1594 | MS.gene05969:intron | 45.0% |
| TGTCTCGGATGGGAATGGTT+TGG | + | 57350:2933-2952 | MS.gene05969:intergenic | 50.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | + | 57350:1768-1787 | MS.gene05969:intergenic | 50.0% |
| !! | CGTCCTTTAGATTTGGTGGG+TGG | + | 57350:2510-2529 | MS.gene05969:intergenic | 50.0% |
| TCACACGACAGGTGGAACCG+TGG | - | 57350:3301-3320 | MS.gene05969:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57350 | gene | 707 | 3586 | 707 | ID=MS.gene05969 |
| 57350 | mRNA | 707 | 3586 | 707 | ID=MS.gene05969.t1;Parent=MS.gene05969 |
| 57350 | exon | 3492 | 3586 | 3492 | ID=MS.gene05969.t1.exon1;Parent=MS.gene05969.t1 |
| 57350 | CDS | 3492 | 3586 | 3492 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| 57350 | exon | 3208 | 3283 | 3208 | ID=MS.gene05969.t1.exon2;Parent=MS.gene05969.t1 |
| 57350 | CDS | 3208 | 3283 | 3208 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| 57350 | exon | 2453 | 3011 | 2453 | ID=MS.gene05969.t1.exon3;Parent=MS.gene05969.t1 |
| 57350 | CDS | 2453 | 3011 | 2453 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| 57350 | exon | 1639 | 1799 | 1639 | ID=MS.gene05969.t1.exon4;Parent=MS.gene05969.t1 |
| 57350 | CDS | 1639 | 1799 | 1639 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| 57350 | exon | 1321 | 1518 | 1321 | ID=MS.gene05969.t1.exon5;Parent=MS.gene05969.t1 |
| 57350 | CDS | 1321 | 1518 | 1321 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| 57350 | exon | 1133 | 1232 | 1133 | ID=MS.gene05969.t1.exon6;Parent=MS.gene05969.t1 |
| 57350 | CDS | 1133 | 1232 | 1133 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| 57350 | exon | 707 | 981 | 707 | ID=MS.gene05969.t1.exon7;Parent=MS.gene05969.t1 |
| 57350 | CDS | 707 | 981 | 707 | ID=cds.MS.gene05969.t1;Parent=MS.gene05969.t1 |
| Gene Sequence |
| Protein sequence |
