Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95338.t1 | BBG98627.1 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 3.50E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95338.t1 | P10978 | 30.5 | 501 | 267 | 11 | 7 | 442 | 5 | 489 | 1.8e-52 | 208.4 |
| MS.gene95338.t1 | P10978 | 35.6 | 216 | 110 | 5 | 264 | 459 | 935 | 1141 | 1.0e-23 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95338.t1 | A0A4Y1R3K4 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 2.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050213 | MS.gene95338 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene052735 | MS.gene95338 | 0.84059 | 7.94E-58 | -1.69E-46 |
| MS.gene052736 | MS.gene95338 | 0.846292 | 2.38E-59 | -1.69E-46 |
| MS.gene057174 | MS.gene95338 | 0.809356 | 1.97E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene95338 | 0.821275 | 4.40E-53 | -1.69E-46 |
| MS.gene060522 | MS.gene95338 | 0.811574 | 6.54E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene95338 | 0.81336 | 2.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95338.t1 | MTR_2g039140 | 40.217 | 184 | 77 | 2 | 1 | 183 | 120 | 271 | 4.39e-32 | 124 |
| MS.gene95338.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 1.19e-18 | 80.5 |
| MS.gene95338.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 225 | 368 | 103 | 252 | 1.51e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95338.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 5.30e-30 | 113 |
Find 108 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAATTGAACTTAAT+TGG | 0.076810 | 1.3:+18029371 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.3:+18028861 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 1.3:+18027739 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.3:+18029631 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.3:+18028998 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.3:-18028939 | MS.gene95338:CDS |
| CAACGACGTGCTAACCGTTT+TGG | 0.291938 | 1.3:+18027782 | None:intergenic |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 1.3:-18027690 | MS.gene95338:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.3:+18028862 | None:intergenic |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 1.3:+18027687 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.3:+18028999 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.3:-18029717 | MS.gene95338:CDS |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 1.3:+18028527 | None:intergenic |
| GATACCAATTGAACTTAATT+GGG | 0.389115 | 1.3:+18029372 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 1.3:-18028538 | MS.gene95338:CDS |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.3:+18028832 | None:intergenic |
| ACAACCCAATTAAGTTCAAT+TGG | 0.412295 | 1.3:-18029376 | MS.gene95338:CDS |
| ACAGTAGCACTCCAACTATC+TGG | 0.413891 | 1.3:+18029304 | None:intergenic |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.3:-18028807 | MS.gene95338:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 1.3:+18027695 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.3:-18029315 | MS.gene95338:CDS |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 1.3:+18027636 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 1.3:+18027562 | None:intergenic |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 1.3:-18028760 | MS.gene95338:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.3:-18029242 | MS.gene95338:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.3:-18028801 | MS.gene95338:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 1.3:+18028681 | None:intergenic |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 1.3:+18027740 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.3:-18029208 | MS.gene95338:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.3:-18028968 | MS.gene95338:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.3:-18028770 | MS.gene95338:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.3:-18028918 | MS.gene95338:CDS |
| CAGTCTTCCACGGTGATGAT+TGG | 0.449152 | 1.3:-18028655 | MS.gene95338:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.3:-18029724 | MS.gene95338:CDS |
| CACAGCTGTGAGTGGCTCCT+CGG | 0.454182 | 1.3:-18029281 | MS.gene95338:CDS |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 1.3:-18028524 | MS.gene95338:CDS |
| ACAGCTGTGAGTGGCTCCTC+GGG | 0.470989 | 1.3:-18029280 | MS.gene95338:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 1.3:-18028506 | MS.gene95338:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 1.3:+18029478 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.3:-18028769 | MS.gene95338:CDS |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 1.3:+18028558 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.3:+18028810 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.3:-18028827 | MS.gene95338:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 1.3:-18028507 | MS.gene95338:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.3:-18028800 | MS.gene95338:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.3:-18028919 | MS.gene95338:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.3:-18028842 | MS.gene95338:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.3:-18029450 | MS.gene95338:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.514140 | 1.3:-18028641 | MS.gene95338:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.3:-18028905 | MS.gene95338:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.3:-18027796 | MS.gene95338:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 1.3:+18027745 | None:intergenic |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 1.3:-18028498 | MS.gene95338:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 1.3:+18028688 | None:intergenic |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 1.3:-18028696 | MS.gene95338:CDS |
| CTTTGTATGCAATACTGAAG+AGG | 0.534584 | 1.3:+18029174 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.3:-18029638 | MS.gene95338:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.3:+18028955 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.3:+18028833 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.3:-18029209 | MS.gene95338:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 1.3:-18028587 | MS.gene95338:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.3:-18029468 | MS.gene95338:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.3:-18028794 | MS.gene95338:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 1.3:-18027637 | MS.gene95338:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 1.3:-18027636 | MS.gene95338:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.3:-18029524 | MS.gene95338:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.558134 | 1.3:+18029308 | None:intergenic |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 1.3:-18028759 | MS.gene95338:CDS |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.3:-18029439 | MS.gene95338:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.3:-18029736 | MS.gene95338:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.3:-18028962 | MS.gene95338:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 1.3:-18027648 | MS.gene95338:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 1.3:+18027625 | None:intergenic |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.3:-18028851 | MS.gene95338:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.3:-18028930 | MS.gene95338:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.3:-18029428 | MS.gene95338:CDS |
| GCTACTGTCACAGCTGTGAG+TGG | 0.594785 | 1.3:-18029289 | MS.gene95338:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.3:-18029219 | MS.gene95338:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.597976 | 1.3:+18029309 | None:intergenic |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.3:-18029465 | MS.gene95338:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 1.3:-18027739 | MS.gene95338:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.3:-18029601 | MS.gene95338:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 1.3:-18027670 | MS.gene95338:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.3:-18028965 | MS.gene95338:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.3:-18029627 | MS.gene95338:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.3:-18029731 | MS.gene95338:CDS |
| GGCTACACAACAGTCTTCCA+CGG | 0.609498 | 1.3:-18028665 | MS.gene95338:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.3:+18029602 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.3:-18029758 | MS.gene95338:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.3:+18028825 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.3:-18029763 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.3:+18029203 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.3:+18029522 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.3:-18028990 | MS.gene95338:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.3:-18029535 | MS.gene95338:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.3:+18028952 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.629176 | 1.3:-18029356 | MS.gene95338:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 1.3:-18027736 | MS.gene95338:CDS |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 1.3:-18028608 | MS.gene95338:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 1.3:-18028686 | MS.gene95338:CDS |
| CAAAACGGTTAGCACGTCGT+TGG | 0.663704 | 1.3:-18027781 | MS.gene95338:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.3:-18029002 | MS.gene95338:CDS |
| AAATCTTCCAATCATCACCG+TGG | 0.678539 | 1.3:+18028648 | None:intergenic |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 1.3:-18028505 | MS.gene95338:CDS |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.3:+18028834 | None:intergenic |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 1.3:-18027659 | MS.gene95338:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.3:+18029519 | None:intergenic |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 1.3:-18028620 | MS.gene95338:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.3:18028471-18028490 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.3:18028470-18028489 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.3:18028560-18028579 | MS.gene95338:CDS | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.3:18028904-18028923 | MS.gene95338:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.3:18027861-18027880 | MS.gene95338:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.3:18028791-18028810 | MS.gene95338:CDS | 25.0% |
| ! | GATACCAATTGAACTTAATT+GGG | + | chr1.3:18027960-18027979 | None:intergenic | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.3:18028559-18028578 | MS.gene95338:CDS | 25.0% |
| ACAACCCAATTAAGTTCAAT+TGG | - | chr1.3:18027953-18027972 | MS.gene95338:intron | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.3:18027864-18027883 | MS.gene95338:intron | 30.0% | |
| CGATACCAATTGAACTTAAT+TGG | + | chr1.3:18027961-18027980 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.3:18028688-18028707 | MS.gene95338:CDS | 30.0% | |
| GTATTGCATACAAAGTAAAG+AGG | - | chr1.3:18028163-18028182 | MS.gene95338:intron | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.3:18027593-18027612 | MS.gene95338:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.3:18028522-18028541 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.3:18028522-18028541 | MS.gene95338:CDS | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.3:18028478-18028497 | MS.gene95338:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.3:18028774-18028793 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.3:18029519-18029538 | MS.gene95338:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr1.3:18027854-18027873 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.3:18029518-18029537 | MS.gene95338:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.3:18027691-18027710 | MS.gene95338:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.3:18028204-18028223 | MS.gene95338:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.3:18028502-18028521 | MS.gene95338:CDS | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.3:18028866-18028885 | MS.gene95338:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.3:18028805-18028824 | MS.gene95338:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.3:18028805-18028824 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.3:18027598-18027617 | MS.gene95338:CDS | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.3:18028625-18028644 | MS.gene95338:CDS | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.3:18028266-18028285 | MS.gene95338:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr1.3:18028187-18028206 | MS.gene95338:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.3:18028937-18028956 | MS.gene95338:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.3:18029124-18029143 | MS.gene95338:intron | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr1.3:18029459-18029478 | MS.gene95338:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.3:18029287-18029306 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.3:18028847-18028866 | MS.gene95338:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.3:18028822-18028841 | MS.gene95338:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.3:18029639-18029658 | MS.gene95338:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.3:18028880-18028899 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr1.3:18029152-18029171 | MS.gene95338:intron | 35.0% | |
| CTTTGTATGCAATACTGAAG+AGG | + | chr1.3:18028158-18028177 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.3:18028529-18028548 | MS.gene95338:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.3:18028305-18028324 | MS.gene95338:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.3:18029408-18029427 | MS.gene95338:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.3:18028500-18028519 | None:intergenic | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.3:18029401-18029420 | MS.gene95338:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.3:18028499-18028518 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.3:18028528-18028547 | MS.gene95338:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.3:18028823-18028842 | MS.gene95338:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.3:18028507-18028526 | None:intergenic | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr1.3:18028239-18028258 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.3:18028619-18028638 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.3:18028620-18028639 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.3:18028570-18028589 | MS.gene95338:CDS | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.3:18028390-18028409 | MS.gene95338:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr1.3:18029339-18029358 | MS.gene95338:CDS | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.3:18028569-18028588 | MS.gene95338:CDS | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.3:18028498-18028517 | None:intergenic | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr1.3:18028684-18028703 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.3:18029219-18029238 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.3:18027702-18027721 | MS.gene95338:CDS | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.3:18028487-18028506 | MS.gene95338:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr1.3:18028181-18028200 | MS.gene95338:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.3:18029180-18029199 | MS.gene95338:CDS | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.3:18028087-18028106 | MS.gene95338:intron | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr1.3:18028245-18028264 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.3:18029645-18029664 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.3:18029283-18029302 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr1.3:18029611-18029630 | MS.gene95338:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.3:18029077-18029096 | MS.gene95338:intron | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr1.3:18029429-18029448 | MS.gene95338:CDS | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.3:18029236-18029255 | MS.gene95338:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.3:18028824-18028843 | MS.gene95338:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.3:18028831-18028850 | MS.gene95338:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr1.3:18029413-18029432 | MS.gene95338:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.3:18029115-18029134 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.3:18029637-18029656 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.3:18029659-18029678 | MS.gene95338:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+AGG | - | chr1.3:18028283-18028302 | MS.gene95338:intron | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.3:18028624-18028643 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.3:18029138-18029157 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.3:18028399-18028418 | MS.gene95338:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.3:18028831-18028850 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.3:18027973-18027992 | MS.gene95338:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.3:18028068-18028087 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.3:18027701-18027720 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr1.3:18028274-18028293 | MS.gene95338:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.3:18027683-18027702 | None:intergenic | 40.0% |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.3:18027813-18027832 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.3:18028954-18028973 | MS.gene95338:CDS | 45.0% | |
| ACAGTAGCACTCCAACTATC+TGG | + | chr1.3:18028028-18028047 | None:intergenic | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.3:18028023-18028042 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.3:18027730-18027749 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.3:18029590-18029609 | MS.gene95338:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.3:18027728-18027747 | MS.gene95338:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.3:18029240-18029259 | MS.gene95338:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.3:18028339-18028358 | MS.gene95338:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.3:18029587-18029606 | None:intergenic | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr1.3:18028742-18028761 | MS.gene95338:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.3:18029160-18029179 | MS.gene95338:intron | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.3:18028024-18028043 | None:intergenic | 45.0% | |
| TCGAACCTTTCGTCAAACCA+CGG | + | chr1.3:18028984-18029003 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.3:18028333-18028352 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.3:18028535-18028554 | MS.gene95338:CDS | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.3:18028014-18028033 | MS.gene95338:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.3:18028334-18028353 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.3:18028110-18028129 | MS.gene95338:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr1.3:18028200-18028219 | None:intergenic | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.3:18027890-18027909 | MS.gene95338:intron | 45.0% | |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.3:18029592-18029611 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.3:18029606-18029625 | None:intergenic | 45.0% |
| AAACCACGGCTCTCCTTCTT+TGG | + | chr1.3:18028970-18028989 | None:intergenic | 50.0% | |
| AACCACGGCTCTCCTTCTTT+GGG | + | chr1.3:18028969-18028988 | None:intergenic | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.3:18027605-18027624 | MS.gene95338:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.3:18029269-18029288 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.3:18029593-18029612 | MS.gene95338:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.3:18028721-18028740 | MS.gene95338:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.3:18029199-18029218 | MS.gene95338:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.3:18028129-18028148 | None:intergenic | 50.0% | |
| CAAAACGGTTAGCACGTCGT+TGG | - | chr1.3:18029548-18029567 | MS.gene95338:CDS | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.3:18029533-18029552 | MS.gene95338:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr1.3:18028674-18028693 | MS.gene95338:CDS | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.3:18028633-18028652 | MS.gene95338:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.3:18028424-18028443 | MS.gene95338:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.3:18029099-18029118 | MS.gene95338:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.3:18027794-18027813 | MS.gene95338:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.3:18028327-18028346 | MS.gene95338:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.3:18028411-18028430 | MS.gene95338:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr1.3:18028664-18028683 | MS.gene95338:CDS | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr1.3:18028985-18029004 | MS.gene95338:CDS | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr1.3:18028193-18028212 | MS.gene95338:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.3:18029013-18029032 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.3:18029205-18029224 | MS.gene95338:CDS | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.3:18027879-18027898 | MS.gene95338:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.3:18029707-18029726 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.3:18028410-18028429 | MS.gene95338:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.3:18029670-18029689 | MS.gene95338:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.3:18029053-18029072 | MS.gene95338:intron | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.3:18028364-18028383 | MS.gene95338:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.3:18029206-18029225 | None:intergenic | 50.0% |
| ! | CAACGACGTGCTAACCGTTT+TGG | + | chr1.3:18029550-18029569 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.3:18029593-18029612 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.3:18028361-18028380 | MS.gene95338:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.3:18027805-18027824 | MS.gene95338:CDS | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.3:18027612-18027631 | MS.gene95338:CDS | 50.0% |
| ACCACGGCTCTCCTTCTTTG+GGG | + | chr1.3:18028968-18028987 | None:intergenic | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.3:18028120-18028139 | MS.gene95338:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.3:18027810-18027829 | None:intergenic | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.3:18029693-18029712 | MS.gene95338:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.3:18029025-18029044 | MS.gene95338:intron | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.3:18029028-18029047 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.3:18029028-18029047 | MS.gene95338:intron | 55.0% | |
| GAGAGCCGTGGTTTGACGAA+AGG | - | chr1.3:18028976-18028995 | MS.gene95338:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.3:18028121-18028140 | MS.gene95338:intron | 55.0% | |
| GCTACTGTCACAGCTGTGAG+TGG | - | chr1.3:18028040-18028059 | MS.gene95338:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.3:18029007-18029026 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.3:18028709-18028728 | MS.gene95338:CDS | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.3:18029681-18029700 | MS.gene95338:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.3:18028651-18028670 | None:intergenic | 55.0% | |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.3:18027901-18027920 | MS.gene95338:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.3:18028644-18028663 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.3:18029036-18029055 | None:intergenic | 60.0% | |
| ACAGCTGTGAGTGGCTCCTC+GGG | - | chr1.3:18028049-18028068 | MS.gene95338:intron | 60.0% | |
| ACCCCAAAGAAGGAGAGCCG+TGG | - | chr1.3:18028964-18028983 | MS.gene95338:CDS | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.3:18029060-18029079 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.3:18028380-18028399 | None:intergenic | 60.0% | |
| CACAGCTGTGAGTGGCTCCT+CGG | - | chr1.3:18028048-18028067 | MS.gene95338:intron | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.3:18029696-18029715 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.3:18029031-18029050 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.3:18029692-18029711 | MS.gene95338:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.3:18028643-18028662 | MS.gene95338:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.3:18028367-18028386 | MS.gene95338:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.3:18029056-18029075 | MS.gene95338:intron | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.3:18028377-18028396 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18027572 | 18029779 | 18027572 | ID=MS.gene95338 |
| chr1.3 | mRNA | 18027572 | 18029779 | 18027572 | ID=MS.gene95338.t1;Parent=MS.gene95338 |
| chr1.3 | exon | 18029175 | 18029779 | 18029175 | ID=MS.gene95338.t1.exon1;Parent=MS.gene95338.t1 |
| chr1.3 | CDS | 18029175 | 18029779 | 18029175 | ID=cds.MS.gene95338.t1;Parent=MS.gene95338.t1 |
| chr1.3 | exon | 18028499 | 18029024 | 18028499 | ID=MS.gene95338.t1.exon2;Parent=MS.gene95338.t1 |
| chr1.3 | CDS | 18028499 | 18029024 | 18028499 | ID=cds.MS.gene95338.t1;Parent=MS.gene95338.t1 |
| chr1.3 | exon | 18027572 | 18027859 | 18027572 | ID=MS.gene95338.t1.exon3;Parent=MS.gene95338.t1 |
| chr1.3 | CDS | 18027572 | 18027859 | 18027572 | ID=cds.MS.gene95338.t1;Parent=MS.gene95338.t1 |
| Gene Sequence |
| Protein sequence |
