AlfalfaGEDB | MS.gene95738

M. sativa cultivar XinJiangDaYe / MS.gene95738

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95738.t1	AES87914.2	75.5	139	22	2	1	139	1	127	4.00E-44	187.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95738.t1	G7JSH2	75.5	139	22	2	1	139	1	127	2.9e-44	187.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene95738	0.829536	4.87E-55	-1.69E-46
MS.gene050584	MS.gene95738	0.807483	4.94E-50	-1.69E-46
MS.gene050585	MS.gene95738	0.807436	5.06E-50	-1.69E-46
MS.gene050587	MS.gene95738	0.820896	5.38E-53	-1.69E-46
MS.gene05157	MS.gene95738	0.800958	1.13E-48	-1.69E-46
MS.gene051789	MS.gene95738	0.805097	1.57E-49	-1.69E-46
MS.gene052142	MS.gene95738	0.820624	6.22E-53	-1.69E-46
MS.gene053074	MS.gene95738	0.817385	3.39E-52	-1.69E-46
MS.gene053383	MS.gene95738	0.808935	2.43E-50	-1.69E-46
MS.gene05456	MS.gene95738	0.838904	2.18E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95738.t1	MTR_4g037480	83.453	139	11	2	1	139	1	127	6.46e-65	194
MS.gene95738.t1	MTR_4g037560	82.270	141	20	3	1	139	1	138	1.37e-59	181
MS.gene95738.t1	MTR_2g090185	52.518	139	53	5	1	139	1	126	6.70e-28	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95738.t1	AT2G20870	40.000	110	59	5	35	139	33	140	1.71e-12	60.8

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Find 48 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCATTACCCTGGCAT+TGG	0.536138	4.1:-54781720	MS.gene95738:CDS
AACAAATGTGTCATCGCCAC+CGG	0.495697	4.1:+54781566	None:intergenic
AATCCATTTATTGGTGGCAC+TGG	0.434316	4.1:-54781657	MS.gene95738:CDS
AATCCCGGCAGTGGTGGTGG+CGG	0.528937	4.1:-54781519	MS.gene95738:CDS
AATCCTAAATGTCCAATGCC+AGG	0.501871	4.1:+54781708	None:intergenic
ACAAATGTGTCATCGCCACC+GGG	0.594099	4.1:+54781567	None:intergenic
ACAACACAGCAAGCAGTTGC+TGG	0.501170	4.1:-54781822	MS.gene95738:CDS
ACCACCGCCACCACCACTGC+CGG	0.441986	4.1:+54781515	None:intergenic
ACTCCTAATAATCCATTTAT+TGG	0.205431	4.1:-54781666	MS.gene95738:CDS
ATCCTAAATGTCCAATGCCA+GGG	0.617878	4.1:+54781709	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTAATAATCCATTTATTGG+TGG	-	chr4.1:54781704-54781723	MS.gene95738:CDS	30.0%
TCATGCTTGAATAAAAACTG+CGG	+	chr4.1:54781620-54781639	None:intergenic	30.0%
TTAGGAGTAAGCCTGAATTT+CGG	+	chr4.1:54781689-54781708	None:intergenic	35.0%
AATCCTAAATGTCCAATGCC+AGG	+	chr4.1:54781662-54781681	None:intergenic	40.0%
ATCCTAAATGTCCAATGCCA+GGG	+	chr4.1:54781661-54781680	None:intergenic	40.0%
TAGGATTTCCACCGAAATTC+AGG	-	chr4.1:54781675-54781694	MS.gene95738:CDS	40.0%
TCAGGTCATAGTTATGTTCC+CGG	-	chr4.1:54781782-54781801	MS.gene95738:CDS	40.0%
TCTTAGCATTAGCAATGCTG+CGG	+	chr4.1:54781571-54781590	None:intergenic	40.0%
AAACTGCATTACCCTGGCAT+TGG	-	chr4.1:54781647-54781666	MS.gene95738:CDS	45.0%
AACAAATGTGTCATCGCCAC+CGG	+	chr4.1:54781804-54781823	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	54781485	54781904	54781485	ID=MS.gene95738
chr4.1	mRNA	54781485	54781904	54781485	ID=MS.gene95738.t1;Parent=MS.gene95738
chr4.1	exon	54781485	54781904	54781485	ID=MS.gene95738.t1.exon1;Parent=MS.gene95738.t1
chr4.1	CDS	54781485	54781904	54781485	ID=cds.MS.gene95738.t1;Parent=MS.gene95738.t1

Gene Sequence

>MS.gene95738

ATGGTTCAAAGAGCTTACTCTTTCTTTGCACTTTTTCTCATTTTCAATATCCTCCTTGTCACAACACAGCAAGCAGTTGCTGGCCGCAGCATTGCTAATGCTAAGAACTCCGACAGCGACGACAAGAAAGAGCCGCAGTTTTTATTCAAGCATGATCATGGTAAACTGCATTACCCTGGCATTGGACATTTAGGATTTCCACCGAAATTCAGGCTTACTCCTAATAATCCATTTATTGGTGGCACTGGAGGATCAGGTTCGGGTTTAGGATCAGGAACAGGAGCAGGATCAGGATCATCAGGTCATAGTTATGTTCCCGGTGGCGATGACACATTTGTTCCAAACCCTGGCTTTGAGGTTCCAAATCCCGGCAGTGGTGGTGGCGGTGGTGGTAGAGTTGCATCAACGGTTCATCCATGA

Protein sequence

>MS.gene95738.t1

MVQRAYSFFALFLIFNILLVTTQQAVAGRSIANAKNSDSDDKKEPQFLFKHDHGKLHYPGIGHLGFPPKFRLTPNNPFIGGTGGSGSGLGSGTGAGSGSSGHSYVPGGDDTFVPNPGFEVPNPGSGGGGGGRVASTVHP