AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95887

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95887.t1 MTR_8g106740 95.785 261 7 1 1 257 1 261 0.0 511
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95887.t1 AT3G18165 64.082 245 85 2 8 249 2 246 2.00e-114 328

Find 58 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTATTACCTGAAAAT+TGG 0.178579 4.3:-639819 None:intergenic
TTGGAGTTGTTGCTTAAATA+TGG 0.210527 4.3:+640196 MS.gene95887:CDS
AATATACAGAATGGAAAATT+TGG 0.215246 4.3:+640177 MS.gene95887:intron
AACCACCACCTGTTAATAAA+TGG 0.267827 4.3:+639994 MS.gene95887:CDS
TTGGATGCTATCACTGAAAA+TGG 0.288576 4.3:+642149 MS.gene95887:CDS
TCATCGTTCCATTTATTAAC+AGG 0.301941 4.3:-640002 None:intergenic
CCTGATGATATTTCCTTTCA+CGG 0.355650 4.3:-641805 None:intergenic
AAATGGCCAACTGGCAAATT+CGG 0.358938 4.3:+642166 MS.gene95887:CDS
TTGTGCTGTTTCCATGCATC+AGG 0.378418 4.3:-640220 None:intergenic
GGCCTCCTGTTTCTCTTGAT+AGG 0.382975 4.3:+639955 MS.gene95887:CDS
TGGTGGTTCTAATTCATATC+TGG 0.391099 4.3:-639979 None:intergenic
CTTCAGGATTATCCAATGAT+TGG 0.394401 4.3:+639903 MS.gene95887:intron
CTGTAATCGTCGTCGATGTA+AGG 0.408083 4.3:-639689 None:intergenic
AGGCAATGCATCGATGATTT+CGG 0.412030 4.3:-639669 None:intergenic
CTGGACCTATCAAGAGAAAC+AGG 0.424750 4.3:-639960 None:intergenic
TCTTTCCAGAGGCTGGAACT+TGG 0.442445 4.3:+642130 MS.gene95887:intron
CTTGAAGCTCCACCTTCTTA+CGG 0.442648 4.3:+639626 MS.gene95887:CDS
TCGACTTCGATCTTAACCCT+TGG 0.460976 4.3:-639716 None:intergenic
CGACTTCGATCTTAACCCTT+GGG 0.465911 4.3:-639715 None:intergenic
CAGAATGCAGAAATTAGCTC+AGG 0.472152 4.3:+641754 MS.gene95887:intron
TTCCATTTATTAACAGGTGG+TGG 0.485498 4.3:-639996 None:intergenic
TCATACTCTCTACCAATCAT+TGG 0.493778 4.3:-639915 None:intergenic
TTCTTCAATATCAAACCATC+AGG 0.495320 4.3:+640063 MS.gene95887:CDS
TATCACTGAAAATGGCCAAC+TGG 0.495702 4.3:+642157 MS.gene95887:CDS
CCGTGAAAGGAAATATCATC+AGG 0.513849 4.3:+641805 MS.gene95887:CDS
GAAGAGGTGGAAAATCTTTG+AGG 0.518940 4.3:-639790 None:intergenic
GGAAGAAGCAGCAGCAGTAA+CGG 0.525910 4.3:+639590 MS.gene95887:CDS
CAAAGCATTAAGCTCATATG+AGG 0.531387 4.3:-641929 None:intergenic
AATGGAACGATGAAACTGCT+TGG 0.535567 4.3:+640012 MS.gene95887:CDS
TGCATCGATGATTTCGGCGT+CGG 0.537750 4.3:-639663 None:intergenic
CGATGATTTCGGCGTCGGAA+TGG 0.540962 4.3:-639658 None:intergenic
AAGAGAAACAGGAGGCCTAC+CGG 0.542107 4.3:-639949 None:intergenic
GAGTATGAGCGTGTAAGAGC+CGG 0.544230 4.3:+639930 MS.gene95887:CDS
TGAAAATTGGAAGAGGGAAG+AGG 0.551095 4.3:-639806 None:intergenic
ACAGAGCTCATTCCATTGCA+TGG 0.563696 4.3:-641953 None:intergenic
TATTACCTGAAAATTGGAAG+AGG 0.565356 4.3:-639813 None:intergenic
TTAAATATGGCCCTGATGCA+TGG 0.568166 4.3:+640209 MS.gene95887:CDS
ATGATTCCGAATTTGCCAGT+TGG 0.571957 4.3:-642172 None:intergenic
TGAGAAGAGAAGCAGCAGAA+AGG 0.572177 4.3:+642034 MS.gene95887:CDS
ATTACCTGAAAATTGGAAGA+GGG 0.574966 4.3:-639812 None:intergenic
ACGAAAGGGTAAATCATGAT+GGG 0.575853 4.3:+639563 None:intergenic
GGGTAAATCATGATGGGAGA+AGG 0.576400 4.3:+639569 None:intergenic
AAGCTCCACCTTCTTACGGT+AGG 0.576815 4.3:+639630 MS.gene95887:CDS
GAAACAGCACAATCAACGAT+TGG 0.581574 4.3:+640231 MS.gene95887:CDS
GATTGGAAGTATACTTGTCA+AGG 0.585048 4.3:+640248 MS.gene95887:CDS
TGGCTAGACCTACCGTAAGA+AGG 0.586301 4.3:-639638 None:intergenic
TCGTTCCATTTATTAACAGG+TGG 0.588971 4.3:-639999 None:intergenic
AAATCTTTGAGGAAATCAGC+GGG 0.596837 4.3:-639779 None:intergenic
TTAATGCTTTGTCCATGCAA+TGG 0.598699 4.3:+641941 MS.gene95887:CDS
AAATTGGAAGAGGGAAGAGG+TGG 0.604837 4.3:-639803 None:intergenic
ACGACGATTACAGCGACCCA+AGG 0.617860 4.3:+639699 MS.gene95887:CDS
TGTGCTGTTTCCATGCATCA+GGG 0.618858 4.3:-640219 None:intergenic
CTAGACCTACCGTAAGAAGG+TGG 0.632917 4.3:-639635 None:intergenic
AAAATCTTTGAGGAAATCAG+CGG 0.660874 4.3:-639780 None:intergenic
GCATCTCTTCTTCAACGAGA+CGG 0.670836 4.3:-639739 None:intergenic
CGACGATTACAGCGACCCAA+GGG 0.693830 4.3:+639700 MS.gene95887:CDS
GACCTATCAAGAGAAACAGG+AGG 0.712656 4.3:-639957 None:intergenic
ATGAGCGTGTAAGAGCCGGT+AGG 0.740638 4.3:+639934 MS.gene95887:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTATTTTTTAATGAATA+AGG + chr4.3:640972-640991 MS.gene95887:intron 10.0%
!! ATTAAAAACTTAGAAGAAAA+AGG - chr4.3:640894-640913 None:intergenic 15.0%
!! GAAAATGAAAATGAAAAATA+TGG - chr4.3:640736-640755 None:intergenic 15.0%
!!! TTTGTAAATTTTGTTTTTCT+TGG + chr4.3:642066-642085 MS.gene95887:intron 15.0%
!! AATATACAGAATGGAAAATT+TGG + chr4.3:640177-640196 MS.gene95887:intron 20.0%
!! AGAACATATTTAATGAATCA+AGG - chr4.3:640676-640695 None:intergenic 20.0%
!! AGAATGTTTCATAGTAAATA+TGG + chr4.3:640495-640514 MS.gene95887:intron 20.0%
!! ATATTTAATGAATCAAGGTT+GGG - chr4.3:640671-640690 None:intergenic 20.0%
!! ATGAATGTTTCACATAAATA+TGG + chr4.3:641145-641164 MS.gene95887:intron 20.0%
!! ATTGATTACTTTCATGTTTA+GGG + chr4.3:640846-640865 MS.gene95887:intron 20.0%
!! GTATATTAACTTAAACTAGT+TGG - chr4.3:640164-640183 None:intergenic 20.0%
!! GTTAATTATTACCTGAAAAT+TGG - chr4.3:639822-639841 None:intergenic 20.0%
!! TTAAAATCGATGAAAGAAAA+AGG - chr4.3:641656-641675 None:intergenic 20.0%
!! TTTAAAAATAACAGTGACAA+GGG - chr4.3:641852-641871 None:intergenic 20.0%
!!! AATTCTTCATATTTTTCTCT+TGG + chr4.3:641047-641066 MS.gene95887:intron 20.0%
!!! GTTTAAGTTAATATACAGAA+TGG + chr4.3:640168-640187 MS.gene95887:intron 20.0%
!!! TTTCATCGATTTTAATTTTG+AGG + chr4.3:641661-641680 MS.gene95887:intron 20.0%
!!! TTTTAAAAATAACAGTGACA+AGG - chr4.3:641853-641872 None:intergenic 20.0%
!!! TTTTTCCTTTTTTCAAAACA+AGG + chr4.3:640913-640932 MS.gene95887:intron 20.0%
! AAGAAAAAGGTGAATAAAAC+TGG - chr4.3:640881-640900 None:intergenic 25.0%
! ATCTACTACCAATAAGTAAA+TGG - chr4.3:640828-640847 None:intergenic 25.0%
! ATTAAATATGTTCTTGACTC+TGG + chr4.3:640682-640701 MS.gene95887:intron 25.0%
! CATATTTAATGAATCAAGGT+TGG - chr4.3:640672-640691 None:intergenic 25.0%
! CTTGTTAATTAGGAACTTAA+GGG - chr4.3:641211-641230 None:intergenic 25.0%
! GATTGATTACTTTCATGTTT+AGG + chr4.3:640845-640864 MS.gene95887:intron 25.0%
! TAATATACCTCTTGTTGAAT+TGG + chr4.3:640448-640467 MS.gene95887:intron 25.0%
!! ACTTGTTAATTAGGAACTTA+AGG - chr4.3:641212-641231 None:intergenic 25.0%
!! GGTTTGAATACTTGTTAATT+AGG - chr4.3:641221-641240 None:intergenic 25.0%
!! TTTATTCTTCCATATTGGTT+TGG + chr4.3:641245-641264 MS.gene95887:intron 25.0%
!!! TCTCAAAATTACTAGTCTTA+AGG + chr4.3:641608-641627 MS.gene95887:intron 25.0%
!!! TTCAACCTTGTTTTGAAAAA+AGG - chr4.3:640921-640940 None:intergenic 25.0%
AAATTAAAGTGAAGACCTGA+TGG - chr4.3:640081-640100 None:intergenic 30.0%
AATATGAGCCACAGTATAAT+TGG - chr4.3:640287-640306 None:intergenic 30.0%
ACTTCTATGTCTTCTATCAT+GGG + chr4.3:640947-640966 MS.gene95887:intron 30.0%
ATTACCTGAAAATTGGAAGA+GGG - chr4.3:639815-639834 None:intergenic 30.0%
CAATATGGAAGAATAAAGTC+AGG - chr4.3:641242-641261 None:intergenic 30.0%
CTGACTTTATTCTTCCATAT+TGG + chr4.3:641240-641259 MS.gene95887:intron 30.0%
GGAAAAGAAGAAATCTCTTA+AGG + chr4.3:640625-640644 MS.gene95887:intron 30.0%
GTTGCTTAATGTGAAGAAAA+AGG - chr4.3:641532-641551 None:intergenic 30.0%
TAACTGGCAATGATGATAAA+AGG + chr4.3:640787-640806 MS.gene95887:intron 30.0%
TACTTCTATGTCTTCTATCA+TGG + chr4.3:640946-640965 MS.gene95887:intron 30.0%
TATTACCTGAAAATTGGAAG+AGG - chr4.3:639816-639835 None:intergenic 30.0%
TCACATAAATATGGTAGTTG+AGG + chr4.3:641154-641173 MS.gene95887:intron 30.0%
TCATCGTTCCATTTATTAAC+AGG - chr4.3:640005-640024 None:intergenic 30.0%
TTATCATCATTGCCAGTTAA+AGG - chr4.3:640786-640805 None:intergenic 30.0%
TTCTTCAATATCAAACCATC+AGG + chr4.3:640063-640082 MS.gene95887:CDS 30.0%
TTGAAAAAGTTAACCGTGAA+AGG + chr4.3:641792-641811 MS.gene95887:CDS 30.0%
TTGTTCATCCAATTATACTG+TGG + chr4.3:640276-640295 MS.gene95887:intron 30.0%
TTGTTGTATGCAATATTCTG+CGG + chr4.3:641120-641139 MS.gene95887:intron 30.0%
! AAAATCTTTGAGGAAATCAG+CGG - chr4.3:639783-639802 None:intergenic 30.0%
! ACAAGAGGTATATTAATCTG+AGG - chr4.3:640443-640462 None:intergenic 30.0%
! CTCCTTTTTCTTCACATAAA+AGG + chr4.3:641551-641570 MS.gene95887:intron 30.0%
! TATCTCTTTTCGTATAGCAT+TGG + chr4.3:641709-641728 MS.gene95887:intron 30.0%
! TATTTTTCTCCTGAATCCAA+AGG + chr4.3:641010-641029 MS.gene95887:intron 30.0%
! TTCTTCTTTTCCAGCTAATA+AGG - chr4.3:640617-640636 None:intergenic 30.0%
! TTGGAGTTGTTGCTTAAATA+TGG + chr4.3:640196-640215 MS.gene95887:CDS 30.0%
!! AATTTGATTTGCACAAGTAC+AGG - chr4.3:640375-640394 None:intergenic 30.0%
!! ACTAGTAATTTTGAGAGCAT+TGG - chr4.3:641604-641623 None:intergenic 30.0%
!!! AGTTTTAGAGTGTTAGAAAG+AGG + chr4.3:641445-641464 MS.gene95887:intron 30.0%
!!! CTAGTAATTTTGAGAGCATT+GGG - chr4.3:641603-641622 None:intergenic 30.0%
!!! GTTTTAGAGTGTTAGAAAGA+GGG + chr4.3:641446-641465 MS.gene95887:intron 30.0%
!!! GTTTTTTTCTTTCTTTCCAG+AGG + chr4.3:642119-642138 MS.gene95887:intron 30.0%
AAAAATAACAGTGACAAGGG+TGG - chr4.3:641849-641868 None:intergenic 35.0%
AAAAGAGAGAAAAACCCTAG+CGG - chr4.3:639869-639888 None:intergenic 35.0%
AACCACCACCTGTTAATAAA+TGG + chr4.3:639994-640013 MS.gene95887:CDS 35.0%
ACAAAGTCTGTTCCTTTAAC+TGG + chr4.3:640771-640790 MS.gene95887:intron 35.0%
AGTTGCTTAGACTGCAATTA+GGG - chr4.3:641509-641528 None:intergenic 35.0%
CCTGATGATATTTCCTTTCA+CGG - chr4.3:641808-641827 None:intergenic 35.0%
CTAAAACTCACTCTCCTATT+GGG - chr4.3:641433-641452 None:intergenic 35.0%
CTTCAGGATTATCCAATGAT+TGG + chr4.3:639903-639922 MS.gene95887:intron 35.0%
GATATTGCATACAACAACCA+AGG - chr4.3:640538-640557 None:intergenic 35.0%
GATTCTTTAAGTCTCTTGCT+TGG + chr4.3:641316-641335 MS.gene95887:intron 35.0%
GGATTCAGGAGAAAAATAGA+AGG - chr4.3:641008-641027 None:intergenic 35.0%
TCAAGAACCAATTCAACAAG+AGG - chr4.3:640458-640477 None:intergenic 35.0%
TCATACTCTCTACCAATCAT+TGG - chr4.3:639918-639937 None:intergenic 35.0%
TCGTTCCATTTATTAACAGG+TGG - chr4.3:640002-640021 None:intergenic 35.0%
TTAATGCTTTGTCCATGCAA+TGG + chr4.3:641941-641960 MS.gene95887:CDS 35.0%
TTCCATTTATTAACAGGTGG+TGG - chr4.3:639999-640018 None:intergenic 35.0%
TTGATTTACGATTCTGCTTC+AGG + chr4.3:639887-639906 MS.gene95887:intron 35.0%
TTGGATGCTATCACTGAAAA+TGG + chr4.3:642149-642168 MS.gene95887:CDS 35.0%
TTTCAACCATGATTGACCTT+TGG - chr4.3:641029-641048 None:intergenic 35.0%
! AAATCTTTGAGGAAATCAGC+GGG - chr4.3:639782-639801 None:intergenic 35.0%
! CAAAGCATTAAGCTCATATG+AGG - chr4.3:641932-641951 None:intergenic 35.0%
! CGCCTTTTATGTGAAGAAAA+AGG - chr4.3:641556-641575 None:intergenic 35.0%
! GATTGGAAGTATACTTGTCA+AGG + chr4.3:640248-640267 MS.gene95887:CDS 35.0%
! TCTAAAACTCACTCTCCTAT+TGG - chr4.3:641434-641453 None:intergenic 35.0%
! TTGCGTGCATTTTATGTACA+AGG - chr4.3:641378-641397 None:intergenic 35.0%
!! GACTTTAAGACCTTATTAGC+TGG + chr4.3:640604-640623 MS.gene95887:intron 35.0%
!! TGGCTGATTTCATCTAGTTT+TGG + chr4.3:642086-642105 MS.gene95887:intron 35.0%
!! TGGTGGTTCTAATTCATATC+TGG - chr4.3:639982-640001 None:intergenic 35.0%
AAAATGAGATCAGTGCACTG+TGG + chr4.3:641085-641104 MS.gene95887:intron 40.0%
AAAGAGAGAAAAACCCTAGC+GGG - chr4.3:639868-639887 None:intergenic 40.0%
AAATGGCCAACTGGCAAATT+CGG + chr4.3:642166-642185 MS.gene95887:CDS 40.0%
AATCCACACAGCAACAAATG+TGG - chr4.3:640329-640348 None:intergenic 40.0%
AATGGAACGATGAAACTGCT+TGG + chr4.3:640012-640031 MS.gene95887:CDS 40.0%
ACACATGAGTTTCACCCAAT+AGG + chr4.3:641416-641435 MS.gene95887:intron 40.0%
ATATGTCTCGAGCACATCAA+AGG - chr4.3:641187-641206 None:intergenic 40.0%
ATGATAAAAGGCCGGTCTTA+CGG + chr4.3:640799-640818 MS.gene95887:intron 40.0%
ATGATTCCGAATTTGCCAGT+TGG - chr4.3:642175-642194 None:intergenic 40.0%
CAGAATGCAGAAATTAGCTC+AGG + chr4.3:641754-641773 MS.gene95887:intron 40.0%
CATGATTGACCTTTGGATTC+AGG - chr4.3:641022-641041 None:intergenic 40.0%
CCGTGAAAGGAAATATCATC+AGG + chr4.3:641805-641824 MS.gene95887:CDS 40.0%
CTCAAGCAACCAAACCAATA+TGG - chr4.3:641257-641276 None:intergenic 40.0%
CTGAATCCAAAGGTCAATCA+TGG + chr4.3:641020-641039 MS.gene95887:intron 40.0%
GAAACAGCACAATCAACGAT+TGG + chr4.3:640231-640250 MS.gene95887:CDS 40.0%
GAAGAGGTGGAAAATCTTTG+AGG - chr4.3:639793-639812 None:intergenic 40.0%
GAGTTGCTTAGACTGCAATT+AGG - chr4.3:641510-641529 None:intergenic 40.0%
GGAGAAAGAGTTAGTTAGTG+TGG - chr4.3:639844-639863 None:intergenic 40.0%
GTATTCCTGGCATTTCTCTA+GGG + chr4.3:641468-641487 MS.gene95887:intron 40.0%
TATCACTGAAAATGGCCAAC+TGG + chr4.3:642157-642176 MS.gene95887:CDS 40.0%
TATTCCTGGCATTTCTCTAG+GGG + chr4.3:641469-641488 MS.gene95887:intron 40.0%
TGAAAATTGGAAGAGGGAAG+AGG - chr4.3:639809-639828 None:intergenic 40.0%
TGGCAATGATGATAAAAGGC+CGG + chr4.3:640791-640810 MS.gene95887:intron 40.0%
TGGGTGAAACTCATGTGTTA+AGG - chr4.3:641414-641433 None:intergenic 40.0%
TGTTGTATGCAATATCCTGC+TGG + chr4.3:640542-640561 MS.gene95887:intron 40.0%
TTAAATATGGCCCTGATGCA+TGG + chr4.3:640209-640228 MS.gene95887:CDS 40.0%
! AGGCAATGCATCGATGATTT+CGG - chr4.3:639672-639691 None:intergenic 40.0%
! ATTCCACATTTGTTGCTGTG+TGG + chr4.3:640323-640342 MS.gene95887:intron 40.0%
! TACGGCTGCCATTTACTTAT+TGG + chr4.3:640817-640836 MS.gene95887:intron 40.0%
! TCTTCCCTCTTCCAATTTTC+AGG + chr4.3:639808-639827 MS.gene95887:CDS 40.0%
! TTTTCTTTCTTTCCAGAGGC+TGG + chr4.3:642123-642142 MS.gene95887:intron 40.0%
!! TGTTAGAAAGAGGGTATTCC+TGG + chr4.3:641455-641474 MS.gene95887:intron 40.0%
AAATTGGAAGAGGGAAGAGG+TGG - chr4.3:639806-639825 None:intergenic 45.0%
ACAGAGCTCATTCCATTGCA+TGG - chr4.3:641956-641975 None:intergenic 45.0%
ATGAATCAAGGTTGGGACGA+TGG - chr4.3:640664-640683 None:intergenic 45.0%
CGACTTCGATCTTAACCCTT+GGG - chr4.3:639718-639737 None:intergenic 45.0%
CTGGACCTATCAAGAGAAAC+AGG - chr4.3:639963-639982 None:intergenic 45.0%
CTGTAATCGTCGTCGATGTA+AGG - chr4.3:639692-639711 None:intergenic 45.0%
CTTGAAGCTCCACCTTCTTA+CGG + chr4.3:639626-639645 MS.gene95887:CDS 45.0%
GACCTATCAAGAGAAACAGG+AGG - chr4.3:639960-639979 None:intergenic 45.0%
GCATCTCTTCTTCAACGAGA+CGG - chr4.3:639742-639761 None:intergenic 45.0%
GGCTATGCCTAATGATGCAA+AGG - chr4.3:641582-641601 None:intergenic 45.0%
GGTATTCCTGGCATTTCTCT+AGG + chr4.3:641467-641486 MS.gene95887:intron 45.0%
GTATGCAATATCCTGCTGGT+TGG + chr4.3:640546-640565 MS.gene95887:intron 45.0%
TACTTTGAGCATGACAGCCT+TGG + chr4.3:640518-640537 MS.gene95887:intron 45.0%
TCGACTTCGATCTTAACCCT+TGG - chr4.3:639719-639738 None:intergenic 45.0%
TGAGAAGAGAAGCAGCAGAA+AGG + chr4.3:642034-642053 MS.gene95887:CDS 45.0%
TTATCATTCCACCAACCAGC+AGG - chr4.3:640560-640579 None:intergenic 45.0%
!! TGTGCTGTTTCCATGCATCA+GGG - chr4.3:640222-640241 None:intergenic 45.0%
!! TTGGTTTGGTTGCTTGAGTG+AGG + chr4.3:641259-641278 MS.gene95887:intron 45.0%
!! TTGTGCTGTTTCCATGCATC+AGG - chr4.3:640223-640242 None:intergenic 45.0%
!!! GAGGAAATCAGCGGGTTTTT+TGG - chr4.3:639774-639793 None:intergenic 45.0%
AAGAGAAACAGGAGGCCTAC+CGG - chr4.3:639952-639971 None:intergenic 50.0%
AAGCTCCACCTTCTTACGGT+AGG + chr4.3:639630-639649 MS.gene95887:CDS 50.0%
AATCAAGGTTGGGACGATGG+AGG - chr4.3:640661-640680 None:intergenic 50.0%
ACCAGTGCCTCTAGTGAACT+TGG - chr4.3:640713-640732 None:intergenic 50.0%
CAGTGCCTCTAGTGAACTTG+GGG - chr4.3:640711-640730 None:intergenic 50.0%
CCAGTGCCTCTAGTGAACTT+GGG - chr4.3:640712-640731 None:intergenic 50.0%
CTAGACCTACCGTAAGAAGG+TGG - chr4.3:639638-639657 None:intergenic 50.0%
GAGTATGAGCGTGTAAGAGC+CGG + chr4.3:639930-639949 MS.gene95887:CDS 50.0%
GGAAGAAGCAGCAGCAGTAA+CGG + chr4.3:639590-639609 MS.gene95887:CDS 50.0%
GGCGACTCCTTTGCATCATT+AGG + chr4.3:641572-641591 MS.gene95887:intron 50.0%
GTAAATGGCAGCCGTAAGAC+CGG - chr4.3:640813-640832 None:intergenic 50.0%
TAACAGTGACAAGGGTGGAC+AGG - chr4.3:641844-641863 None:intergenic 50.0%
TCTTTCCAGAGGCTGGAACT+TGG + chr4.3:642130-642149 MS.gene95887:intron 50.0%
TGGCTAGACCTACCGTAAGA+AGG - chr4.3:639641-639660 None:intergenic 50.0%
TTGTCCCCTAGAGAAATGCC+AGG - chr4.3:641476-641495 None:intergenic 50.0%
! GGCCTCCTGTTTCTCTTGAT+AGG + chr4.3:639955-639974 MS.gene95887:CDS 50.0%
! TGCAATATCCTGCTGGTTGG+TGG + chr4.3:640549-640568 MS.gene95887:intron 50.0%
! TGCATCGATGATTTCGGCGT+CGG - chr4.3:639666-639685 None:intergenic 50.0%
AACTCTTTCTCCGCCCGCTA+GGG + chr4.3:639852-639871 MS.gene95887:intron 55.0%
ACGACGATTACAGCGACCCA+AGG + chr4.3:639699-639718 MS.gene95887:CDS 55.0%
AGCATCCAAGTTCCAGCCTC+TGG - chr4.3:642138-642157 None:intergenic 55.0%
ATGAGCGTGTAAGAGCCGGT+AGG + chr4.3:639934-639953 MS.gene95887:CDS 55.0%
CGACGATTACAGCGACCCAA+GGG + chr4.3:639700-639719 MS.gene95887:CDS 55.0%
GAGAGAAAAACCCTAGCGGG+CGG - chr4.3:639865-639884 None:intergenic 55.0%
TAACTCTTTCTCCGCCCGCT+AGG + chr4.3:639851-639870 MS.gene95887:intron 55.0%
TGCCTCTAGTGAACTTGGGG+AGG - chr4.3:640708-640727 None:intergenic 55.0%
! CCCAAGTTCACTAGAGGCAC+TGG + chr4.3:640709-640728 MS.gene95887:intron 55.0%
! CGATGATTTCGGCGTCGGAA+TGG - chr4.3:639661-639680 None:intergenic 55.0%
GGCCTCCCCAAGTTCACTAG+AGG + chr4.3:640703-640722 MS.gene95887:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 639578 642196 639578 ID=MS.gene95887
chr4.3 mRNA 639578 642196 639578 ID=MS.gene95887.t1;Parent=MS.gene95887
chr4.3 exon 639578 639829 639578 ID=MS.gene95887.t1.exon1;Parent=MS.gene95887.t1
chr4.3 CDS 639578 639829 639578 ID=cds.MS.gene95887.t1;Parent=MS.gene95887.t1
chr4.3 exon 639909 640084 639909 ID=MS.gene95887.t1.exon2;Parent=MS.gene95887.t1
chr4.3 CDS 639909 640084 639909 ID=cds.MS.gene95887.t1;Parent=MS.gene95887.t1
chr4.3 exon 640186 640269 640186 ID=MS.gene95887.t1.exon3;Parent=MS.gene95887.t1
chr4.3 CDS 640186 640269 640186 ID=cds.MS.gene95887.t1;Parent=MS.gene95887.t1
chr4.3 exon 641757 641826 641757 ID=MS.gene95887.t1.exon4;Parent=MS.gene95887.t1
chr4.3 CDS 641757 641826 641757 ID=cds.MS.gene95887.t1;Parent=MS.gene95887.t1
chr4.3 exon 641922 642055 641922 ID=MS.gene95887.t1.exon5;Parent=MS.gene95887.t1
chr4.3 CDS 641922 642055 641922 ID=cds.MS.gene95887.t1;Parent=MS.gene95887.t1
chr4.3 exon 642139 642196 642139 ID=MS.gene95887.t1.exon6;Parent=MS.gene95887.t1
chr4.3 CDS 642139 642196 642139 ID=cds.MS.gene95887.t1;Parent=MS.gene95887.t1
Gene Sequence

>MS.gene95887

ATGATGGGAGAAGGAAGAAGCAGCAGCAGTAACGGTGATGTTCTGATGCTTGAAGCTCCACCTTCTTACGGTAGGTCTAGCCATTCCGACGCCGAAATCATCGATGCATTGCCTTACATCGACGACGATTACAGCGACCCAAGGGTTAAGATCGAAGTCGACCGTCTCGTTGAAGAAGAGATGCGTCGCAGCTCCAAAAAACCCGCTGATTTCCTCAAAGATTTTCCACCTCTTCCCTCTTCCAATTTTCAGGTAATAATTAACCACACTAACTAACTCTTTCTCCGCCCGCTAGGGTTTTTCTCTCTTTTGATTTACGATTCTGCTTCAGGATTATCCAATGATTGGTAGAGAGTATGAGCGTGTAAGAGCCGGTAGGCCTCCTGTTTCTCTTGATAGGTCCAGATATGAATTAGAACCACCACCTGTTAATAAATGGAACGATGAAACTGCTTGGAAACTTGCTATTCAACGAGCTCAACGACTTCTTCAATATCAAACCATCAGGTCTTCACTTTAATTTTTTTTTTTTTTTTTTAATAAATGTTTTAAGATTCATATTATCATCTACTTGTTTGTTTAACCAACTAGTTTAAGTTAATATACAGAATGGAAAATTTGGAGTTGTTGCTTAAATATGGCCCTGATGCATGGAAACAGCACAATCAACGATTGGAAGTATACTTGTCAAGGTTCGTTTGTTCATCCAATTATACTGTGGCTCATATTTAGAGTAAACTCTTGAATTCCACATTTGTTGCTGTGTGGATTCAGTATGTTTTGTTCACTATTTGCCTGTACTTGTGCAAATCAAATTTTGCTTATTTCATATATTAGCACATGACATGAACATTCTGACATACCTCAGATTAATATACCTCTTGTTGAATTGGTTCTTGAGAGTGATTCTGCAGATAAGAATGTTTCATAGTAAATATGGTACTTTGAGCATGACAGCCTTGGTTGTTGTATGCAATATCCTGCTGGTTGGTGGAATGATAATGTTCTATTTTAATTAATTTTTTTGACTTTAAGACCTTATTAGCTGGAAAAGAAGAAATCTCTTAAGGAAATCATTAACCTCCATCGTCCCAACCTTGATTCATTAAATATGTTCTTGACTCTGGCCTCCCCAAGTTCACTAGAGGCACTGGTCCATATTTTTCATTTTCATTTTCATTTTCAAACAAAATACAAAGTCTGTTCCTTTAACTGGCAATGATGATAAAAGGCCGGTCTTACGGCTGCCATTTACTTATTGGTAGTAGATTGATTACTTTCATGTTTAGGGTTTTCTGAGCCAGTTTTATTCACCTTTTTCTTCTAAGTTTTTAATTTTTCCTTTTTTCAAAACAAGGTTGAATTTTCTACTTCTATGTCTTCTATCATGGGTCATTCTATTTTTTAATGAATAAGGTCAATGATTTCCTTCTATTTTTCTCCTGAATCCAAAGGTCAATCATGGTTGAAATTCTTCATATTTTTCTCTTGGAGAAATCTAGTGACAAAAATGAGATCAGTGCACTGTGGTGAATTATTTTGTTGTTGTATGCAATATTCTGCGGATATGAATGTTTCACATAAATATGGTAGTTGAGGTTGACAGCCTTTGATGTGCTCGAGACATATTCCCTTAAGTTCCTAATTAACAAGTATTCAAACCTGACTTTATTCTTCCATATTGGTTTGGTTGCTTGAGTGAGGCTTACTTGAGTGTCTTCTAAAGAAACTATTAGCAGATTCTTTAAGTCTCTTGCTTGGAGCATTTCTTAGTTCAGTGCTTCACAATACTCGTTACCTTGTACATAAAATGCACGCAACATATTATTAATTCCTTAACACATGAGTTTCACCCAATAGGAGAGTGAGTTTTAGAGTGTTAGAAAGAGGGTATTCCTGGCATTTCTCTAGGGGACAAACATCTTTATCCCTAATTGCAGTCTAAGCAACTCCTTTTTCTTCACATTAAGCAACTCCTTTTTCTTCACATAAAAGGCGACTCCTTTGCATCATTAGGCATAGCCCAATGCTCTCAAAATTACTAGTCTTAAGGACTGTATTTCATAGCATTATATCCTTTTTCTTTCATCGATTTTAATTTTGAGGAACTATTGTTCTGTTGTCACTTACATATCTCTTTTCGTATAGCATTGGTTACAGTTGTGTTATCTATTTTCAGAATGCAGAAATTAGCTCAGGAACAAAATGATAAGATTGAAAAAGTTAACCGTGAAAGGAAATATCATCAGGTGAATATGACTTTCCTGTCCACCCTTGTCACTGTTATTTTTAAAATTCTTGTTAAGTTTACTTAAAGTCACATTTTTTTAATAACTATTGTCAGCAAAACACCTCATATGAGCTTAATGCTTTGTCCATGCAATGGAATGAGCTCTGTCAGAAAAATATAGACATCAAAGTTGTGTGCGCTTCAGTTGAAACTCACTTAAATGAACTGAGAAGAGAAGCAGCAGAAAGGTAACTCAGCTTTGTAAATTTTGTTTTTCTTGGCTGATTTCATCTAGTTTTGGTGTGTAATTAGTTTTTTTCTTTCTTTCCAGAGGCTGGAACTTGGATGCTATCACTGAAAATGGCCAACTGGCAAATTCGGAATCATGA
Protein sequence

>MS.gene95887.t1

MMGEGRSSSSNGDVLMLEAPPSYGRSSHSDAEIIDALPYIDDDYSDPRVKIEVDRLVEEEMRRSSKKPADFLKDFPPLPSSNFQDYPMIGREYERVRAGRPPVSLDRSRYELEPPPVNKWNDETAWKLAIQRAQRLLQYQTIRMENLELLLKYGPDAWKQHNQRLEVYLSRMQKLAQEQNDKIEKVNRERKYHQQNTSYELNALSMQWNELCQKNIDIKVVCASVETHLNELRREAAERGWNLDAITENGQLANSES