AlfalfaGEDB | MS.gene95896

M. sativa cultivar XinJiangDaYe / MS.gene95896

KEGG: K17479
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95896.t1	PNX58676.1	84.9	284	26	8	1	274	1	277	3.40E-124	454.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95896.t1	Q9FLE8	36.6	254	115	7	61	273	140	388	1.1e-33	145.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95896.t1	A0A2K3JXF8	84.9	284	26	8	1	274	1	277	2.5e-124	454.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051914	MS.gene95896	0.814828	1.26E-51	-1.69E-46
MS.gene052308	MS.gene95896	0.80137	9.30E-49	-1.69E-46
MS.gene052367	MS.gene95896	0.81064	1.04E-50	-1.69E-46
MS.gene053173	MS.gene95896	0.820708	5.95E-53	-1.69E-46
MS.gene053348	MS.gene95896	0.818592	1.81E-52	-1.69E-46
MS.gene054551	MS.gene95896	0.809816	1.57E-50	-1.69E-46
MS.gene054593	MS.gene95896	0.803967	2.71E-49	-1.69E-46
MS.gene054662	MS.gene95896	0.832243	1.06E-55	-1.69E-46
MS.gene056041	MS.gene95896	0.816547	5.23E-52	-1.69E-46
MS.gene05640	MS.gene95896	0.834192	3.46E-56	-1.69E-46
MS.gene05652	MS.gene95896	0.802297	6.00E-49	-1.69E-46
MS.gene057367	MS.gene95896	0.857848	1.23E-62	-1.69E-46
MS.gene06093	MS.gene95896	0.831239	1.87E-55	-1.69E-46
MS.gene061260	MS.gene95896	0.805087	1.58E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95896.t1	MTR_8g106900	87.234	282	20	4	1	274	1	274	2.98e-152	426
MS.gene95896.t1	MTR_7g104720	56.364	165	66	3	109	273	246	404	1.88e-54	181
MS.gene95896.t1	MTR_1g090400	48.125	160	77	3	114	273	215	368	3.77e-45	156
MS.gene95896.t1	MTR_3g017490	46.452	155	79	2	120	274	111	261	1.36e-42	147
MS.gene95896.t1	MTR_1g051180	43.827	162	84	2	118	273	203	363	3.27e-42	148
MS.gene95896.t1	MTR_7g106500	42.424	165	88	3	114	273	116	278	2.92e-41	143
MS.gene95896.t1	MTR_8g099665	46.707	167	80	3	113	273	204	367	9.97e-40	142
MS.gene95896.t1	MTR_7g010090	36.786	280	116	8	55	273	152	431	4.81e-38	139
MS.gene95896.t1	MTR_8g038440	46.753	154	75	4	123	273	105	254	9.81e-38	134
MS.gene95896.t1	MTR_5g083110	46.452	155	77	3	119	273	90	238	7.20e-37	131
MS.gene95896.t1	MTR_7g090230	42.581	155	84	4	120	273	274	424	1.17e-36	135
MS.gene95896.t1	MTR_3g465550	45.333	150	75	3	120	268	84	227	1.21e-34	125
MS.gene95896.t1	MTR_6g011640	32.653	294	118	9	60	273	103	396	5.82e-33	124
MS.gene95896.t1	MTR_5g072400	42.784	194	102	6	81	273	68	253	1.01e-31	118
MS.gene95896.t1	MTR_3g071510	39.189	148	84	2	126	273	93	234	2.51e-29	111
MS.gene95896.t1	MTR_3g030520	38.854	157	82	3	131	273	142	298	1.40e-23	97.4
MS.gene95896.t1	MTR_5g048870	37.500	96	57	1	116	208	61	156	1.88e-12	64.3
MS.gene95896.t1	MTR_7g079015	42.045	88	45	2	164	245	1	88	2.38e-11	59.7
MS.gene95896.t1	MTR_1g095960	38.776	98	51	3	168	256	32	129	9.53e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95896.t1	AT4G10630	53.274	336	93	11	1	274	1	334	2.87e-101	299
MS.gene95896.t1	AT1G32760	53.165	316	101	13	2	274	3	314	7.76e-81	246
MS.gene95896.t1	AT5G03870	44.907	216	100	3	61	274	186	384	1.35e-48	166
MS.gene95896.t1	AT1G64500	49.390	164	79	2	114	273	202	365	3.26e-45	156
MS.gene95896.t1	AT5G39865	36.546	249	122	6	61	273	140	388	1.87e-43	152
MS.gene95896.t1	AT5G06470	47.273	165	79	3	114	274	79	239	9.99e-43	146
MS.gene95896.t1	AT5G13810	44.379	169	88	3	106	274	111	273	4.18e-41	143
MS.gene95896.t1	AT5G01420	43.750	176	89	4	103	274	232	401	3.43e-38	138
MS.gene95896.t1	AT3G57070	44.231	156	81	3	120	273	264	415	2.36e-37	136
MS.gene95896.t1	AT5G58530	46.429	168	75	4	116	274	105	266	2.68e-37	133
MS.gene95896.t1	AT2G41330	44.805	154	80	3	121	273	251	400	1.66e-36	134
MS.gene95896.t1	AT3G28850	42.135	178	77	4	122	273	249	426	4.31e-36	133
MS.gene95896.t1	AT3G11773	42.857	147	77	3	128	274	11	150	5.20e-31	113
MS.gene95896.t1	AT3G11773	43.103	116	59	3	159	274	92	200	5.02e-22	91.3

Find 90 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCCAAGAGTTAATGATTTC+AGG	0.178045	4.3:-544570	None:intergenic
TGTAGTGATTGTAATGAAAA+TGG	0.257897	4.3:+545164	MS.gene95896:CDS
TCAAAGCAAGGTTTAGGTTT+AGG	0.267652	4.3:-544677	None:intergenic
AAAACCCGGTTCGGCTCTTT+CGG	0.272734	4.3:+544701	MS.gene95896:CDS
TTTGCTGGGAGAGGTTCTTC+AGG	0.294798	4.3:+545007	MS.gene95896:CDS
ACCACTTTCTTCTCTCCGTT+CGG	0.362950	4.3:-544747	None:intergenic
CCGATCCGAAAGAGCCGAAC+CGG	0.370965	4.3:-544706	None:intergenic
CAAGGTTTAGGTTTAGGTTT+GGG	0.381455	4.3:-544671	None:intergenic
GGTTGTGGAAGAGGGTTTGC+TGG	0.388105	4.3:+544992	MS.gene95896:CDS
TTGCTGGGAGAGGTTCTTCA+GGG	0.401617	4.3:+545008	MS.gene95896:CDS
CACCTGAAATCATTAACTCT+TGG	0.404093	4.3:+544568	MS.gene95896:CDS
AGGTGCCGAACTCGTCTTCA+TGG	0.405385	4.3:-544419	None:intergenic
CGAGAAGGTGGTGGAGGAGT+GGG	0.412430	4.3:-544516	None:intergenic
TCTTTAACTTCCACCACTTA+CGG	0.416969	4.3:+544471	MS.gene95896:CDS
GCAAGGTTTAGGTTTAGGTT+TGG	0.424192	4.3:-544672	None:intergenic
GATGTTGAAGGTTGTGGAAG+AGG	0.428644	4.3:+544983	MS.gene95896:CDS
GGGTGAGAAGCGGAAGCTTT+CGG	0.431717	4.3:-544613	None:intergenic
GATGGTGAGGAAACAGAAAC+AGG	0.433812	4.3:+545121	MS.gene95896:CDS
TTCAGGTGGTTCGGAGCGGA+GGG	0.434145	4.3:-544553	None:intergenic
GTTAATGATTTCAGGTGGTT+CGG	0.436171	4.3:-544562	None:intergenic
ACCTGAAATCATTAACTCTT+GGG	0.437778	4.3:+544569	MS.gene95896:CDS
ATGTTGAAGGTTGTGGAAGA+GGG	0.449891	4.3:+544984	MS.gene95896:CDS
CATTAACTCTTGGGAACTCA+TGG	0.451980	4.3:+544578	MS.gene95896:CDS
GGAAGAGGGTTTGCTGGGAG+AGG	0.454130	4.3:+544998	MS.gene95896:CDS
TTTGTGAAGGGATACTATAT+TGG	0.456511	4.3:+544948	MS.gene95896:CDS
GTGAAACGAGAAGGTGGTGG+AGG	0.466542	4.3:-544522	None:intergenic
TTTCAGGTGGTTCGGAGCGG+AGG	0.476568	4.3:-544554	None:intergenic
GTAGTGATTGTAATGAAAAT+GGG	0.482875	4.3:+545165	MS.gene95896:CDS
CGTGACGTTTCGATGGATAG+TGG	0.483806	4.3:+544867	MS.gene95896:CDS
GGAGGTGTATGTGAGGGTTG+TGG	0.490710	4.3:+545053	MS.gene95896:CDS
CCGGTTCGGCTCTTTCGGAT+CGG	0.506227	4.3:+544706	MS.gene95896:CDS
GTGGAGGAGTGGGTGGATCG+AGG	0.507792	4.3:-544506	None:intergenic
TTGAACCATGAAGACGAGTT+CGG	0.509241	4.3:+544414	MS.gene95896:CDS
CTGCGAGCGTGACGTTTCGA+TGG	0.512099	4.3:+544860	MS.gene95896:CDS
GTTGTGGAAGAGGGTTTGCT+GGG	0.513242	4.3:+544993	MS.gene95896:CDS
GTGGGTTTAAAGAGGAACTG+AGG	0.517564	4.3:+544886	MS.gene95896:CDS
ACTTTCTTCTCTCCGTTCGG+TGG	0.523310	4.3:-544744	None:intergenic
GATGGATAGTGGGTTTAAAG+AGG	0.524140	4.3:+544878	MS.gene95896:CDS
TAACTATCTAACTACAAAGT+GGG	0.525753	4.3:-545199	None:intergenic
AGGTGTTCGGAGGACATTTG+AGG	0.530160	4.3:+544791	MS.gene95896:CDS
TGAAGAGATGTTGAAGGTTG+TGG	0.532420	4.3:+544977	MS.gene95896:CDS
TTGGAAGAAGGGGTGAGAAG+CGG	0.533583	4.3:-544623	None:intergenic
CTCTTTCGGATCGGTTTGAG+AGG	0.536689	4.3:+544715	MS.gene95896:CDS
AGAGTGAAACGAGAAGGTGG+TGG	0.542507	4.3:-544525	None:intergenic
GTGAAGGGATACTATATTGG+CGG	0.545463	4.3:+544951	MS.gene95896:CDS
ACGAGAAGGTGGTGGAGGAG+TGG	0.548348	4.3:-544517	None:intergenic
GTTTAGGTTTAGGTTTGGGT+CGG	0.549168	4.3:-544667	None:intergenic
GAAGGTGGTGGAGGAGTGGG+TGG	0.550463	4.3:-544513	None:intergenic
CAACAACGTTGAGAGGTGTT+CGG	0.556960	4.3:+544778	MS.gene95896:CDS
TTGCCAAGAAAAGCTGTTGG+TGG	0.557146	4.3:+545032	MS.gene95896:CDS
AGCGGAAGCTTTCGGTGTCG+AGG	0.562057	4.3:-544605	None:intergenic
GGCACCTCAGCACTCGGTGT+CGG	0.562950	4.3:+544435	MS.gene95896:CDS
GTTGTTGAGAAGGCCGTAAG+TGG	0.564170	4.3:-544484	None:intergenic
TTGAGAGTGAAACGAGAAGG+TGG	0.565568	4.3:-544528	None:intergenic
CGGTGCTGAAGAGATGTTGA+AGG	0.565844	4.3:+544971	MS.gene95896:CDS
CCGCCGAGAGTGTTTGTGAA+GGG	0.568180	4.3:+544936	MS.gene95896:CDS
ATCTATACAACAACGTTGAG+AGG	0.568839	4.3:+544771	MS.gene95896:CDS
CCAAGAAAAGCTGTTGGTGG+AGG	0.569004	4.3:+545035	MS.gene95896:CDS
ATGTAACGGAAGCTGTAAGA+TGG	0.570898	4.3:+545103	MS.gene95896:CDS
GTGACGTTTCGATGGATAGT+GGG	0.575896	4.3:+544868	MS.gene95896:CDS
GTGGATCGAGGTTGTTGAGA+AGG	0.577223	4.3:-544494	None:intergenic
GAGTTCGGCACCTCAGCACT+CGG	0.587519	4.3:+544429	MS.gene95896:CDS
TCCGCCGAGAGTGTTTGTGA+AGG	0.587875	4.3:+544935	MS.gene95896:CDS
CGATCCGAAAGAGCCGAACC+GGG	0.602068	4.3:-544705	None:intergenic
CTTCCGTTACATCGAAAACA+AGG	0.602706	4.3:-545092	None:intergenic
GGTTTGAGAGTGAAACGAGA+AGG	0.605117	4.3:-544531	None:intergenic
TCAGGTGGTTCGGAGCGGAG+GGG	0.606340	4.3:-544552	None:intergenic
TATCCCTTCACAAACACTCT+CGG	0.606463	4.3:-544939	None:intergenic
CAAGAGTTAATGATTTCAGG+TGG	0.609204	4.3:-544567	None:intergenic
GTTGAGAAGGCCGTAAGTGG+TGG	0.614356	4.3:-544481	None:intergenic
TGTTGGTGGAGGTGTATGTG+AGG	0.616641	4.3:+545046	MS.gene95896:CDS
CTAACTATCTAACTACAAAG+TGG	0.616774	4.3:-545200	None:intergenic
AACTCTTGGGAACTCATGGA+AGG	0.617874	4.3:+544582	MS.gene95896:CDS
TGGGTTTAAAGAGGAACTGA+GGG	0.619505	4.3:+544887	MS.gene95896:CDS
GGAGCTTCTGAAAGAGAAGA+CGG	0.622205	4.3:+544908	MS.gene95896:CDS
GGTTTGCCAAGAAAAGCTGT+TGG	0.627797	4.3:+545029	MS.gene95896:CDS
ACGGAAGCTGTAAGATGGTG+AGG	0.629132	4.3:+545108	MS.gene95896:CDS
GTTGGTGGAGGTGTATGTGA+GGG	0.631743	4.3:+545047	MS.gene95896:CDS
TGATTTCAGGTGGTTCGGAG+CGG	0.646701	4.3:-544557	None:intergenic
ACCGAACGGAGAGAAGAAAG+TGG	0.652619	4.3:+544746	MS.gene95896:CDS
AAGTTAAAGAGACGATGTGG+TGG	0.652944	4.3:-544458	None:intergenic
GAGAGGATATGTCCACCGAA+CGG	0.656504	4.3:+544732	MS.gene95896:CDS
GTGGCCGACACCGAGTGCTG+AGG	0.659050	4.3:-544439	None:intergenic
ATGGTGAGGAAACAGAAACA+GGG	0.669145	4.3:+545122	MS.gene95896:CDS
GACATTTGAGGCTTGCAATG+CGG	0.676497	4.3:+544803	MS.gene95896:CDS
CCCTTCACAAACACTCTCGG+CGG	0.696914	4.3:-544936	None:intergenic
CAACGTTGAGAGGTGTTCGG+AGG	0.699173	4.3:+544781	MS.gene95896:CDS
TGGTGAGGAAACAGAAACAG+GGG	0.724543	4.3:+545123	MS.gene95896:CDS
TGGAAGTTAAAGAGACGATG+TGG	0.732203	4.3:-544461	None:intergenic
GCTTCTGAAAGAGAAGACGG+TGG	0.771527	4.3:+544911	MS.gene95896:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GTAGTGATTGTAATGAAAAT+GGG	+	chr4.3:545165-545184	MS.gene95896:CDS	25.0%
!	TGTAGTGATTGTAATGAAAA+TGG	+	chr4.3:545164-545183	MS.gene95896:CDS	25.0%
	ACCTGAAATCATTAACTCTT+GGG	+	chr4.3:544569-544588	MS.gene95896:CDS	30.0%
	TTTGTGAAGGGATACTATAT+TGG	+	chr4.3:544948-544967	MS.gene95896:CDS	30.0%
!	TTTTCTTTGTTGGATGGTTT+TGG	-	chr4.3:544645-544664	None:intergenic	30.0%
!!!	GTTTTTTCAAAGCAAGGTTT+AGG	-	chr4.3:544686-544705	None:intergenic	30.0%
	ATCTATACAACAACGTTGAG+AGG	+	chr4.3:544771-544790	MS.gene95896:CDS	35.0%
	CAAGAGTTAATGATTTCAGG+TGG	-	chr4.3:544570-544589	None:intergenic	35.0%
	CACCTGAAATCATTAACTCT+TGG	+	chr4.3:544568-544587	MS.gene95896:CDS	35.0%
	TCCCAAGAGTTAATGATTTC+AGG	-	chr4.3:544573-544592	None:intergenic	35.0%
!	CAAGGTTTAGGTTTAGGTTT+GGG	-	chr4.3:544674-544693	None:intergenic	35.0%
!	GTTAATGATTTCAGGTGGTT+CGG	-	chr4.3:544565-544584	None:intergenic	35.0%
!	TCAAAGCAAGGTTTAGGTTT+AGG	-	chr4.3:544680-544699	None:intergenic	35.0%
!	TCTTTAACTTCCACCACTTA+CGG	+	chr4.3:544471-544490	MS.gene95896:CDS	35.0%
!!	AACCTTGCTTTGAAAAAACC+CGG	+	chr4.3:544687-544706	MS.gene95896:CDS	35.0%
!!!	TTGCCTTGTTTTCGATGTAA+CGG	+	chr4.3:545089-545108	MS.gene95896:CDS	35.0%
	AAGTTAAAGAGACGATGTGG+TGG	-	chr4.3:544461-544480	None:intergenic	40.0%
	ATGGTGAGGAAACAGAAACA+GGG	+	chr4.3:545122-545141	MS.gene95896:CDS	40.0%
	ATGTTGAAGGTTGTGGAAGA+GGG	+	chr4.3:544984-545003	MS.gene95896:CDS	40.0%
	CATTAACTCTTGGGAACTCA+TGG	+	chr4.3:544578-544597	MS.gene95896:CDS	40.0%
	CTTCCGTTACATCGAAAACA+AGG	-	chr4.3:545095-545114	None:intergenic	40.0%
	GTGAAGGGATACTATATTGG+CGG	+	chr4.3:544951-544970	MS.gene95896:CDS	40.0%
	TATCCCTTCACAAACACTCT+CGG	-	chr4.3:544942-544961	None:intergenic	40.0%
	TGAAGAGATGTTGAAGGTTG+TGG	+	chr4.3:544977-544996	MS.gene95896:CDS	40.0%
	TGGAAGTTAAAGAGACGATG+TGG	-	chr4.3:544464-544483	None:intergenic	40.0%
	TGGGTTTAAAGAGGAACTGA+GGG	+	chr4.3:544887-544906	MS.gene95896:CDS	40.0%
	TTGAACCATGAAGACGAGTT+CGG	+	chr4.3:544414-544433	MS.gene95896:CDS	40.0%
!	ATGTAACGGAAGCTGTAAGA+TGG	+	chr4.3:545103-545122	MS.gene95896:CDS	40.0%
!	GCAAGGTTTAGGTTTAGGTT+TGG	-	chr4.3:544675-544694	None:intergenic	40.0%
!	GTTTAGGTTTAGGTTTGGGT+CGG	-	chr4.3:544670-544689	None:intergenic	40.0%
!!	GATGGATAGTGGGTTTAAAG+AGG	+	chr4.3:544878-544897	MS.gene95896:CDS	40.0%
!!	TCGGTGTTTTCTTTGTTGGA+TGG	-	chr4.3:544651-544670	None:intergenic	40.0%
!!	TGCTTTGAAAAAACCCGGTT+CGG	+	chr4.3:544692-544711	MS.gene95896:CDS	40.0%
!!!	AACCGGGTTTTTTCAAAGCA+AGG	-	chr4.3:544692-544711	None:intergenic	40.0%
!!!	AGAGCTGCTTTTGATGCATT+TGG	+	chr4.3:544828-544847	MS.gene95896:CDS	40.0%
!!!	GTTGGATGGTTTTGGAAGAA+GGG	-	chr4.3:544637-544656	None:intergenic	40.0%
!!!	TGTTGGATGGTTTTGGAAGA+AGG	-	chr4.3:544638-544657	None:intergenic	40.0%
!!!	TTGGATGGTTTTGGAAGAAG+GGG	-	chr4.3:544636-544655	None:intergenic	40.0%
	AACTCTTGGGAACTCATGGA+AGG	+	chr4.3:544582-544601	MS.gene95896:CDS	45.0%
	ACCACTTTCTTCTCTCCGTT+CGG	-	chr4.3:544750-544769	None:intergenic	45.0%
	GATGGTGAGGAAACAGAAAC+AGG	+	chr4.3:545121-545140	MS.gene95896:CDS	45.0%
	GATGTTGAAGGTTGTGGAAG+AGG	+	chr4.3:544983-545002	MS.gene95896:CDS	45.0%
	GGTTTGAGAGTGAAACGAGA+AGG	-	chr4.3:544534-544553	None:intergenic	45.0%
	GGTTTGCCAAGAAAAGCTGT+TGG	+	chr4.3:545029-545048	MS.gene95896:CDS	45.0%
	GTGACGTTTCGATGGATAGT+GGG	+	chr4.3:544868-544887	MS.gene95896:CDS	45.0%
	GTGGGTTTAAAGAGGAACTG+AGG	+	chr4.3:544886-544905	MS.gene95896:CDS	45.0%
	TGGTGAGGAAACAGAAACAG+GGG	+	chr4.3:545123-545142	MS.gene95896:CDS	45.0%
	TTGAGAGTGAAACGAGAAGG+TGG	-	chr4.3:544531-544550	None:intergenic	45.0%
	TTGCCAAGAAAAGCTGTTGG+TGG	+	chr4.3:545032-545051	MS.gene95896:CDS	45.0%
!	GACATTTGAGGCTTGCAATG+CGG	+	chr4.3:544803-544822	MS.gene95896:CDS	45.0%
!	GGAGCTTCTGAAAGAGAAGA+CGG	+	chr4.3:544908-544927	MS.gene95896:CDS	45.0%
!!	CAACAACGTTGAGAGGTGTT+CGG	+	chr4.3:544778-544797	MS.gene95896:CDS	45.0%
!!	TGGGTCGGTGTTTTCTTTGT+TGG	-	chr4.3:544655-544674	None:intergenic	45.0%
	ACCGAACGGAGAGAAGAAAG+TGG	+	chr4.3:544746-544765	MS.gene95896:CDS	50.0%
	ACGGAAGCTGTAAGATGGTG+AGG	+	chr4.3:545108-545127	MS.gene95896:CDS	50.0%
	ACTTTCTTCTCTCCGTTCGG+TGG	-	chr4.3:544747-544766	None:intergenic	50.0%
	AGAGTGAAACGAGAAGGTGG+TGG	-	chr4.3:544528-544547	None:intergenic	50.0%
	AGGTGTTCGGAGGACATTTG+AGG	+	chr4.3:544791-544810	MS.gene95896:CDS	50.0%
	CGTGACGTTTCGATGGATAG+TGG	+	chr4.3:544867-544886	MS.gene95896:CDS	50.0%
	GAGAGGATATGTCCACCGAA+CGG	+	chr4.3:544732-544751	MS.gene95896:CDS	50.0%
	GTGGATCGAGGTTGTTGAGA+AGG	-	chr4.3:544497-544516	None:intergenic	50.0%
	GTTGTTGAGAAGGCCGTAAG+TGG	-	chr4.3:544487-544506	None:intergenic	50.0%
	TTGCTGGGAGAGGTTCTTCA+GGG	+	chr4.3:545008-545027	MS.gene95896:CDS	50.0%
	TTGGAAGAAGGGGTGAGAAG+CGG	-	chr4.3:544626-544645	None:intergenic	50.0%
	TTTGCTGGGAGAGGTTCTTC+AGG	+	chr4.3:545007-545026	MS.gene95896:CDS	50.0%
!	CCAAGAAAAGCTGTTGGTGG+AGG	+	chr4.3:545035-545054	MS.gene95896:CDS	50.0%
!	CCTCCACCAACAGCTTTTCT+TGG	-	chr4.3:545038-545057	None:intergenic	50.0%
!	CGGTGCTGAAGAGATGTTGA+AGG	+	chr4.3:544971-544990	MS.gene95896:CDS	50.0%
!	GCTTCTGAAAGAGAAGACGG+TGG	+	chr4.3:544911-544930	MS.gene95896:CDS	50.0%
!	GTTGGTGGAGGTGTATGTGA+GGG	+	chr4.3:545047-545066	MS.gene95896:CDS	50.0%
!	GTTGTGGAAGAGGGTTTGCT+GGG	+	chr4.3:544993-545012	MS.gene95896:CDS	50.0%
!	TGATTTCAGGTGGTTCGGAG+CGG	-	chr4.3:544560-544579	None:intergenic	50.0%
!	TGTTGGTGGAGGTGTATGTG+AGG	+	chr4.3:545046-545065	MS.gene95896:CDS	50.0%
!!	AAAACCCGGTTCGGCTCTTT+CGG	+	chr4.3:544701-544720	MS.gene95896:CDS	50.0%
!!	CTCTTTCGGATCGGTTTGAG+AGG	+	chr4.3:544715-544734	MS.gene95896:CDS	50.0%
	CCCTTCACAAACACTCTCGG+CGG	-	chr4.3:544939-544958	None:intergenic	55.0%
	GGGTGAGAAGCGGAAGCTTT+CGG	-	chr4.3:544616-544635	None:intergenic	55.0%
	GGTTGTGGAAGAGGGTTTGC+TGG	+	chr4.3:544992-545011	MS.gene95896:CDS	55.0%
	GTTGAGAAGGCCGTAAGTGG+TGG	-	chr4.3:544484-544503	None:intergenic	55.0%
!	GGAGGTGTATGTGAGGGTTG+TGG	+	chr4.3:545053-545072	MS.gene95896:CDS	55.0%
!	GTGAAACGAGAAGGTGGTGG+AGG	-	chr4.3:544525-544544	None:intergenic	55.0%
!!	AGGTGCCGAACTCGTCTTCA+TGG	-	chr4.3:544422-544441	None:intergenic	55.0%
!!	CAACGTTGAGAGGTGTTCGG+AGG	+	chr4.3:544781-544800	MS.gene95896:CDS	55.0%
!!	CCGCCGAGAGTGTTTGTGAA+GGG	+	chr4.3:544936-544955	MS.gene95896:CDS	55.0%
!!	TCCGCCGAGAGTGTTTGTGA+AGG	+	chr4.3:544935-544954	MS.gene95896:CDS	55.0%
	CCGATCCGAAAGAGCCGAAC+CGG	-	chr4.3:544709-544728	None:intergenic	60.0%
	CGATCCGAAAGAGCCGAACC+GGG	-	chr4.3:544708-544727	None:intergenic	60.0%
	CTGCGAGCGTGACGTTTCGA+TGG	+	chr4.3:544860-544879	MS.gene95896:CDS	60.0%
	GAGTTCGGCACCTCAGCACT+CGG	+	chr4.3:544429-544448	MS.gene95896:CDS	60.0%
!	TTCAGGTGGTTCGGAGCGGA+GGG	-	chr4.3:544556-544575	None:intergenic	60.0%
!	TTTCAGGTGGTTCGGAGCGG+AGG	-	chr4.3:544557-544576	None:intergenic	60.0%
!!	ACGAGAAGGTGGTGGAGGAG+TGG	-	chr4.3:544520-544539	None:intergenic	60.0%
!!	AGCGGAAGCTTTCGGTGTCG+AGG	-	chr4.3:544608-544627	None:intergenic	60.0%
!!	CCGGTTCGGCTCTTTCGGAT+CGG	+	chr4.3:544706-544725	MS.gene95896:CDS	60.0%
!!	CGAGAAGGTGGTGGAGGAGT+GGG	-	chr4.3:544519-544538	None:intergenic	60.0%
!!	GGAAGAGGGTTTGCTGGGAG+AGG	+	chr4.3:544998-545017	MS.gene95896:CDS	60.0%
	GTGGAGGAGTGGGTGGATCG+AGG	-	chr4.3:544509-544528	None:intergenic	65.0%
!	TCAGGTGGTTCGGAGCGGAG+GGG	-	chr4.3:544555-544574	None:intergenic	65.0%
!!	GAAGGTGGTGGAGGAGTGGG+TGG	-	chr4.3:544516-544535	None:intergenic	65.0%
!!	GGCACCTCAGCACTCGGTGT+CGG	+	chr4.3:544435-544454	MS.gene95896:CDS	65.0%
!	GTGGCCGACACCGAGTGCTG+AGG	-	chr4.3:544442-544461	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	544390	545214	544390	ID=MS.gene95896
chr4.3	mRNA	544390	545214	544390	ID=MS.gene95896.t1;Parent=MS.gene95896
chr4.3	exon	544390	545214	544390	ID=MS.gene95896.t1.exon1;Parent=MS.gene95896.t1
chr4.3	CDS	544390	545214	544390	ID=cds.MS.gene95896.t1;Parent=MS.gene95896.t1

Gene Sequence

>MS.gene95896

ATGGGTTGCGTGTCTTCACATCTGTTGAACCATGAAGACGAGTTCGGCACCTCAGCACTCGGTGTCGGCCACCACATCGTCTCTTTAACTTCCACCACTTACGGCCTTCTCAACAACCTCGATCCACCCACTCCTCCACCACCTTCTCGTTTCACTCTCAAACCCCTCCGCTCCGAACCACCTGAAATCATTAACTCTTGGGAACTCATGGAAGGCCTCGACACCGAAAGCTTCCGCTTCTCACCCCTTCTTCCAAAACCATCCAACAAAGAAAACACCGACCCAAACCTAAACCTAAACCTTGCTTTGAAAAAACCCGGTTCGGCTCTTTCGGATCGGTTTGAGAGGATATGTCCACCGAACGGAGAGAAGAAAGTGGTGATCTATACAACAACGTTGAGAGGTGTTCGGAGGACATTTGAGGCTTGCAATGCGGTGAGAGCTGCTTTTGATGCATTTGGTGTACAAATCTGCGAGCGTGACGTTTCGATGGATAGTGGGTTTAAAGAGGAACTGAGGGAGCTTCTGAAAGAGAAGACGGTGGTTCCGCCGAGAGTGTTTGTGAAGGGATACTATATTGGCGGTGCTGAAGAGATGTTGAAGGTTGTGGAAGAGGGTTTGCTGGGAGAGGTTCTTCAGGGTTTGCCAAGAAAAGCTGTTGGTGGAGGTGTATGTGAGGGTTGTGGTGATATGAGATTCTTGCCTTGTTTTCGATGTAACGGAAGCTGTAAGATGGTGAGGAAACAGAAACAGGGGAACACTGTTGTTGTTAAGTGTAGTGATTGTAATGAAAATGGGTTAGTTCTGTGCCCACTTTGTAGTTAG

Protein sequence

>MS.gene95896.t1

MGCVSSHLLNHEDEFGTSALGVGHHIVSLTSTTYGLLNNLDPPTPPPPSRFTLKPLRSEPPEIINSWELMEGLDTESFRFSPLLPKPSNKENTDPNLNLNLALKKPGSALSDRFERICPPNGEKKVVIYTTTLRGVRRTFEACNAVRAAFDAFGVQICERDVSMDSGFKEELRELLKEKTVVPPRVFVKGYYIGGAEEMLKVVEEGLLGEVLQGLPRKAVGGGVCEGCGDMRFLPCFRCNGSCKMVRKQKQGNTVVVKCSDCNENGLVLCPLCS