Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96618.t1 | XP_003620724.3 | 90.6 | 341 | 29 | 1 | 70 | 407 | 9 | 349 | 4.10E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96618.t1 | Q9FLH8 | 73.5 | 321 | 85 | 0 | 81 | 401 | 18 | 338 | 2.2e-131 | 470.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96618.t1 | A0A396HJ77 | 90.6 | 341 | 29 | 1 | 70 | 407 | 9 | 349 | 3.0e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032177 | MS.gene96618 | PPI |
| MS.gene056386 | MS.gene96618 | PPI |
| MS.gene96618 | MS.gene003877 | PPI |
| MS.gene28335 | MS.gene96618 | PPI |
| MS.gene96618 | MS.gene052011 | PPI |
| MS.gene46881 | MS.gene96618 | PPI |
| MS.gene96618 | MS.gene98726 | PPI |
| MS.gene85276 | MS.gene96618 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96618.t1 | MTR_6g089480 | 95.873 | 315 | 13 | 0 | 93 | 407 | 1 | 315 | 0.0 | 616 |
| MS.gene96618.t1 | MTR_1g101950 | 85.804 | 317 | 45 | 0 | 84 | 400 | 21 | 337 | 0.0 | 563 |
| MS.gene96618.t1 | MTR_6g089480 | 95.238 | 273 | 13 | 0 | 93 | 365 | 1 | 273 | 0.0 | 532 |
| MS.gene96618.t1 | MTR_6g089480 | 96.296 | 270 | 10 | 0 | 93 | 362 | 1 | 270 | 0.0 | 531 |
| MS.gene96618.t1 | MTR_5g079460 | 74.769 | 325 | 80 | 2 | 79 | 403 | 61 | 383 | 2.83e-167 | 474 |
| MS.gene96618.t1 | MTR_1g076850 | 64.241 | 316 | 111 | 2 | 86 | 401 | 8 | 321 | 3.58e-151 | 431 |
| MS.gene96618.t1 | MTR_7g075860 | 64.577 | 319 | 111 | 1 | 86 | 402 | 41 | 359 | 4.89e-148 | 424 |
| MS.gene96618.t1 | MTR_1g069490 | 65.635 | 323 | 85 | 2 | 78 | 400 | 102 | 398 | 2.20e-144 | 417 |
| MS.gene96618.t1 | MTR_2g098950 | 62.264 | 318 | 118 | 2 | 84 | 401 | 12 | 327 | 2.33e-144 | 414 |
| MS.gene96618.t1 | MTR_1g069745 | 70.408 | 294 | 75 | 2 | 107 | 400 | 4 | 285 | 3.42e-144 | 412 |
| MS.gene96618.t1 | MTR_4g067310 | 62.617 | 321 | 118 | 2 | 84 | 404 | 13 | 331 | 1.46e-143 | 412 |
| MS.gene96618.t1 | MTR_1g057810 | 64.000 | 325 | 111 | 2 | 78 | 402 | 245 | 563 | 1.30e-134 | 397 |
| MS.gene96618.t1 | MTR_1g105150 | 60.923 | 325 | 107 | 3 | 78 | 402 | 245 | 549 | 3.91e-122 | 365 |
| MS.gene96618.t1 | MTR_1g054730 | 56.884 | 276 | 88 | 2 | 128 | 403 | 146 | 390 | 4.83e-98 | 298 |
| MS.gene96618.t1 | MTR_0046s0180 | 67.619 | 105 | 34 | 0 | 296 | 400 | 5 | 109 | 1.71e-45 | 153 |
| MS.gene96618.t1 | MTR_5g044990 | 31.579 | 304 | 185 | 5 | 112 | 395 | 250 | 550 | 1.77e-45 | 165 |
| MS.gene96618.t1 | MTR_4g019165 | 30.790 | 367 | 208 | 7 | 86 | 407 | 93 | 458 | 9.75e-45 | 161 |
| MS.gene96618.t1 | MTR_2g072830 | 26.552 | 290 | 189 | 7 | 116 | 401 | 88 | 357 | 2.51e-13 | 71.2 |
| MS.gene96618.t1 | MTR_3g112040 | 26.744 | 258 | 173 | 7 | 107 | 360 | 73 | 318 | 2.08e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96618.t1 | AT5G51830 | 76.471 | 323 | 76 | 0 | 79 | 401 | 16 | 338 | 0.0 | 519 |
| MS.gene96618.t1 | AT5G51830 | 76.471 | 323 | 76 | 0 | 79 | 401 | 16 | 338 | 0.0 | 519 |
| MS.gene96618.t1 | AT1G66430 | 64.675 | 385 | 129 | 4 | 27 | 406 | 2 | 384 | 1.10e-171 | 485 |
| MS.gene96618.t1 | AT4G10260 | 65.528 | 322 | 108 | 3 | 83 | 404 | 3 | 321 | 4.28e-152 | 433 |
| MS.gene96618.t1 | AT3G59480 | 63.722 | 317 | 113 | 2 | 85 | 401 | 9 | 323 | 5.53e-147 | 420 |
| MS.gene96618.t1 | AT2G31390 | 62.658 | 316 | 116 | 2 | 86 | 401 | 9 | 322 | 7.28e-144 | 412 |
| MS.gene96618.t1 | AT1G06020 | 61.709 | 316 | 119 | 1 | 86 | 401 | 10 | 323 | 5.25e-142 | 408 |
| MS.gene96618.t1 | AT1G06030 | 60.938 | 320 | 123 | 2 | 82 | 401 | 7 | 324 | 2.19e-141 | 406 |
| MS.gene96618.t1 | AT3G54090 | 33.243 | 367 | 198 | 8 | 86 | 407 | 103 | 467 | 2.46e-52 | 182 |
| MS.gene96618.t1 | AT1G50390 | 47.368 | 171 | 59 | 1 | 231 | 401 | 1 | 140 | 1.62e-45 | 154 |
| MS.gene96618.t1 | AT1G69200 | 32.986 | 288 | 173 | 4 | 112 | 380 | 246 | 532 | 3.47e-45 | 165 |
Find 93 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGCCAATCTTAAATT+TGG | 0.189545 | 6.3:+57375424 | None:intergenic |
| CAAATTTAAGATTGGCATTA+TGG | 0.194373 | 6.3:-57375423 | MS.gene96618:CDS |
| AATTGTTACTGAAGGGTCTA+AGG | 0.261268 | 6.3:-57375086 | MS.gene96618:CDS |
| GGAATGGCATAATGAGTATA+TGG | 0.266779 | 6.3:-57375381 | MS.gene96618:CDS |
| GCATTTGTTGTTGGGTTTCA+TGG | 0.278071 | 6.3:-57380496 | MS.gene96618:CDS |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6.3:-57379486 | MS.gene96618:CDS |
| TGTGAAACAGCTTCCTTTGT+AGG | 0.304120 | 6.3:+57372919 | None:intergenic |
| TTAAACTAATTGAGCCAAAA+TGG | 0.312735 | 6.3:+57375524 | None:intergenic |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6.3:-57379487 | MS.gene96618:CDS |
| ACCTCTTTCTGTAACTGTTA+TGG | 0.347968 | 6.3:+57372957 | None:intergenic |
| ATGATCTCGCATTTGTTGTT+GGG | 0.356945 | 6.3:-57380504 | MS.gene96618:CDS |
| CAGAACAATGTCGATACTTC+TGG | 0.361492 | 6.3:-57375792 | MS.gene96618:CDS |
| CAGCACAACCACCTTTAGAT+AGG | 0.363969 | 6.3:+57380452 | None:intergenic |
| GAGAATGCAACCAGAACTTT+TGG | 0.364359 | 6.3:+57375456 | None:intergenic |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.375368 | 6.3:-57375466 | MS.gene96618:CDS |
| TGAGGTTCCAACAATATTAC+AGG | 0.376480 | 6.3:+57380353 | None:intergenic |
| AATGATCTCGCATTTGTTGT+TGG | 0.382123 | 6.3:-57380505 | MS.gene96618:CDS |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6.3:+57375688 | None:intergenic |
| TAGGTTGGAGCAGATGAATT+TGG | 0.387315 | 6.3:-57375840 | MS.gene96618:CDS |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6.3:-57375359 | MS.gene96618:intron |
| GGCCGTCTGCCGAGGCTGCT+CGG | 0.399158 | 6.3:-57375402 | MS.gene96618:CDS |
| AAAACAACGTCATCATCATT+AGG | 0.409948 | 6.3:+57375142 | None:intergenic |
| GCTGGTGATGCATTTGTTAG+TGG | 0.420129 | 6.3:-57374133 | MS.gene96618:CDS |
| GACGCTCCCTGTAATATTGT+TGG | 0.420957 | 6.3:-57380360 | MS.gene96618:CDS |
| ATACGATCCAAATTTAAGAT+TGG | 0.426939 | 6.3:-57375431 | MS.gene96618:CDS |
| CATTTGTTGTTGGGTTTCAT+GGG | 0.428721 | 6.3:-57380495 | MS.gene96618:CDS |
| TGCTGTTGGTATATCTAGAT+TGG | 0.434341 | 6.3:-57379368 | MS.gene96618:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.463431 | 6.3:+57374151 | None:intergenic |
| GCTGTTGGTATATCTAGATT+GGG | 0.464108 | 6.3:-57379367 | MS.gene96618:CDS |
| GTTAAGCCTGTTGACACAAC+TGG | 0.465291 | 6.3:-57374157 | MS.gene96618:CDS |
| AACAACAAATGCGAGATCAT+TGG | 0.468709 | 6.3:+57380507 | None:intergenic |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6.3:-57375380 | MS.gene96618:CDS |
| AAACTCTTAATTGTTACTGA+AGG | 0.493747 | 6.3:-57375094 | MS.gene96618:CDS |
| GAATTTCGAGGCAGGGTTGG+AGG | 0.497205 | 6.3:-57374187 | MS.gene96618:CDS |
| TTCCGAGCAGCCTCGGCAGA+CGG | 0.505848 | 6.3:+57375400 | None:intergenic |
| CTATGCAGGAATTTCGAGGC+AGG | 0.509353 | 6.3:-57374195 | MS.gene96618:intron |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6.3:-57379428 | MS.gene96618:CDS |
| AGCACAACCACCTTTAGATA+GGG | 0.515692 | 6.3:+57380453 | None:intergenic |
| CCAGCAGATTTCTTGAAAGC+CGG | 0.517524 | 6.3:+57379409 | None:intergenic |
| TCTGCCGAGGCTGCTCGGAA+TGG | 0.518189 | 6.3:-57375397 | MS.gene96618:CDS |
| CCGGCTTTCAAGAAATCTGC+TGG | 0.518993 | 6.3:-57379409 | MS.gene96618:CDS |
| GTTGTTGGGTTTCATGGGAA+CGG | 0.523437 | 6.3:-57380490 | MS.gene96618:CDS |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6.3:-57379485 | MS.gene96618:CDS |
| GCTATCATAGTTCACGGTAG+AGG | 0.526652 | 6.3:+57380304 | None:intergenic |
| GCTTCCTTTGTAGGAAGTGA+AGG | 0.529815 | 6.3:+57372928 | None:intergenic |
| GCCATAACAGTTACAGAAAG+AGG | 0.530881 | 6.3:-57372958 | MS.gene96618:CDS |
| AACTCTTAATTGTTACTGAA+GGG | 0.532047 | 6.3:-57375093 | MS.gene96618:CDS |
| AGCTAATGCAGTCCTTGCAT+TGG | 0.532620 | 6.3:+57375755 | None:intergenic |
| ATTGTTACTGAAGGGTCTAA+GGG | 0.532919 | 6.3:-57375085 | MS.gene96618:CDS |
| GGCATTATGGCCGTCTGCCG+AGG | 0.533060 | 6.3:-57375410 | MS.gene96618:CDS |
| CCTGTTGACACAACTGGTGC+TGG | 0.534845 | 6.3:-57374151 | MS.gene96618:CDS |
| ATACGAGCTCCCCTATCTAA+AGG | 0.539574 | 6.3:-57380463 | MS.gene96618:CDS |
| AGATATACCAACAGCAACAT+TGG | 0.540241 | 6.3:+57379375 | None:intergenic |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6.3:-57375646 | MS.gene96618:intron |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6.3:+57379417 | None:intergenic |
| CAGGAATTTCGAGGCAGGGT+TGG | 0.542004 | 6.3:-57374190 | MS.gene96618:CDS |
| ATTTCTATGCAGGAATTTCG+AGG | 0.545607 | 6.3:-57374199 | MS.gene96618:intron |
| TATGCCATTCCGAGCAGCCT+CGG | 0.547132 | 6.3:+57375393 | None:intergenic |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6.3:+57375351 | None:intergenic |
| GATAGAAGAGTCGGTGAAAG+TGG | 0.554603 | 6.3:+57380395 | None:intergenic |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6.3:+57379379 | None:intergenic |
| TTGTGCTGTGCGCCATCGCA+AGG | 0.565179 | 6.3:-57380437 | MS.gene96618:CDS |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6.3:-57379382 | MS.gene96618:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6.3:+57379471 | None:intergenic |
| TGAAGAAGCATATCAGCACT+TGG | 0.569500 | 6.3:+57375681 | None:intergenic |
| GCACAAGGAAACAAGTTCAC+TGG | 0.570180 | 6.3:-57379500 | MS.gene96618:CDS |
| AGAGAACTCGATAGAAGAGT+CGG | 0.571521 | 6.3:+57380386 | None:intergenic |
| TAATATTGTTGGAACCTCAC+CGG | 0.573586 | 6.3:-57380349 | MS.gene96618:CDS |
| AGCGACACTCCTCCCACAGT+TGG | 0.578152 | 6.3:+57379442 | None:intergenic |
| TATGTATGTACAGATAAGTG+AGG | 0.580961 | 6.3:-57375197 | MS.gene96618:intron |
| AATTCCTTCACTTCCTACAA+AGG | 0.581630 | 6.3:-57372932 | MS.gene96618:CDS |
| GCTTTCAAGAAATCTGCTGG+TGG | 0.586129 | 6.3:-57379406 | MS.gene96618:CDS |
| GTTGGTATATCTAGATTGGG+AGG | 0.595607 | 6.3:-57379364 | MS.gene96618:CDS |
| AATCTGCAGAGGTATTTCTC+CGG | 0.604019 | 6.3:+57380330 | None:intergenic |
| TGAGGTTCGATGCCAATGCA+AGG | 0.607359 | 6.3:-57375767 | MS.gene96618:CDS |
| ATAGACTTTGTGCCAACTGT+GGG | 0.616321 | 6.3:-57379454 | MS.gene96618:CDS |
| CAAGAACTCGCGCTCGCCGT+CGG | 0.617107 | 6.3:+57375716 | None:intergenic |
| TATGCAGGAATTTCGAGGCA+GGG | 0.618015 | 6.3:-57374194 | MS.gene96618:intron |
| GACTTTGTGCCAACTGTGGG+AGG | 0.621437 | 6.3:-57379451 | MS.gene96618:CDS |
| GATAGACTTTGTGCCAACTG+TGG | 0.624305 | 6.3:-57379455 | MS.gene96618:CDS |
| GCACAACCACCTTTAGATAG+GGG | 0.631179 | 6.3:+57380454 | None:intergenic |
| GGGTTGTAGATATTACACTA+AGG | 0.635095 | 6.3:-57375065 | MS.gene96618:intron |
| GTATGTACAGATAAGTGAGG+AGG | 0.637985 | 6.3:-57375194 | MS.gene96618:intron |
| CGAGCTCCCCTATCTAAAGG+TGG | 0.649692 | 6.3:-57380460 | MS.gene96618:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.650456 | 6.3:-57379434 | MS.gene96618:CDS |
| GCAGAGGTATTTCTCCGGTG+AGG | 0.653114 | 6.3:+57380335 | None:intergenic |
| TTTGTCACACTTAGATCCGA+CGG | 0.654718 | 6.3:-57375732 | MS.gene96618:CDS |
| ACTTAGAAAAGAAGAGCACA+AGG | 0.660128 | 6.3:-57379515 | MS.gene96618:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6.3:+57375493 | None:intergenic |
| ATGTCGATACTTCTGGCATG+AGG | 0.669268 | 6.3:-57375785 | MS.gene96618:CDS |
| GAGGTTCCAACAATATTACA+GGG | 0.673782 | 6.3:+57380354 | None:intergenic |
| TGTGTAACTTGTCCTTGCGA+TGG | 0.683745 | 6.3:+57380425 | None:intergenic |
| GGTAGAGGAGAAATCTGCAG+AGG | 0.708457 | 6.3:+57380319 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 57372891 | 57380526 | 57372891 | ID=MS.gene96618 |
| chr6.3 | mRNA | 57372891 | 57380526 | 57372891 | ID=MS.gene96618.t1;Parent=MS.gene96618 |
| chr6.3 | exon | 57380319 | 57380526 | 57380319 | ID=MS.gene96618.t1.exon1;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57380319 | 57380526 | 57380319 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| chr6.3 | exon | 57379342 | 57379550 | 57379342 | ID=MS.gene96618.t1.exon2;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57379342 | 57379550 | 57379342 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| chr6.3 | exon | 57375647 | 57375859 | 57375647 | ID=MS.gene96618.t1.exon3;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57375647 | 57375859 | 57375647 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| chr6.3 | exon | 57375360 | 57375557 | 57375360 | ID=MS.gene96618.t1.exon4;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57375360 | 57375557 | 57375360 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| chr6.3 | exon | 57375066 | 57375206 | 57375066 | ID=MS.gene96618.t1.exon5;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57375066 | 57375206 | 57375066 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| chr6.3 | exon | 57374093 | 57374209 | 57374093 | ID=MS.gene96618.t1.exon6;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57374093 | 57374209 | 57374093 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| chr6.3 | exon | 57372891 | 57373028 | 57372891 | ID=MS.gene96618.t1.exon7;Parent=MS.gene96618.t1 |
| chr6.3 | CDS | 57372891 | 57373028 | 57372891 | ID=cds.MS.gene96618.t1;Parent=MS.gene96618.t1 |
| Gene Sequence |
| Protein sequence |