Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97625.t1 | AES99755.2 | 64.5 | 76 | 10 | 1 | 1 | 76 | 1 | 59 | 1.00E-13 | 87 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97625.t1 | G7K7C5 | 64.5 | 76 | 10 | 1 | 1 | 76 | 1 | 59 | 7.3e-14 | 87.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene97625 | 0.816375 | 5.71E-52 | -1.69E-46 |
| MS.gene049977 | MS.gene97625 | 0.811619 | 6.40E-51 | -1.69E-46 |
| MS.gene050237 | MS.gene97625 | 0.805293 | 1.43E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene97625 | 0.809724 | 1.64E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene97625 | 0.808395 | 3.16E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene97625 | 0.807471 | 4.97E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene97625 | 0.818671 | 1.74E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene97625 | 0.829437 | 5.15E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene97625 | 0.80083 | 1.20E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97625.t1 | MTR_5g084370 | 60.714 | 56 | 5 | 1 | 17 | 72 | 17 | 55 | 1.17e-13 | 66.6 |
| MS.gene97625.t1 | MTR_7g050405 | 92.683 | 41 | 3 | 0 | 129 | 169 | 111 | 151 | 3.90e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATCCACTCGAAGAAAA+AGG | 0.267544 | 3.2:-12589143 | None:intergenic |
| CAAAACCTTTGTTCCACTTC+CGG | 0.302523 | 3.2:-12586854 | None:intergenic |
| CATGACCTTCATAGAACTAT+TGG | 0.312779 | 3.2:-12586929 | None:intergenic |
| AAACAGGATACTGCATCTTT+TGG | 0.320733 | 3.2:+12587013 | MS.gene97625:intron |
| CATAGAACTATTGGAATTAA+CGG | 0.386076 | 3.2:-12586920 | None:intergenic |
| AGCTTATGTTGTTATTCAGC+TGG | 0.387479 | 3.2:+12589067 | MS.gene97625:CDS |
| TGCTGTTGCGGTGCTGGTGG+TGG | 0.388686 | 3.2:+12588974 | MS.gene97625:CDS |
| CACAAACCGCACCACAGGAC+AGG | 0.390028 | 3.2:-12588997 | None:intergenic |
| CTGTCCTGTGGTGCGGTTTG+TGG | 0.404468 | 3.2:+12588998 | MS.gene97625:CDS |
| CATTCAATTTGTGCAGTATG+AGG | 0.421829 | 3.2:+12587329 | MS.gene97625:CDS |
| ATATGTAGCATTTGCAATTG+AGG | 0.425581 | 3.2:-12587287 | None:intergenic |
| GGTGGTGACGGTGCCGGAAG+TGG | 0.432585 | 3.2:+12586841 | MS.gene97625:CDS |
| GACTGAACAATGGCAGGATT+CGG | 0.435178 | 3.2:+12586808 | None:intergenic |
| CCTCTTCAAGAATAATAGAT+AGG | 0.436866 | 3.2:-12587488 | None:intergenic |
| CTGCAGCAGTGGCAGTTAGC+AGG | 0.464105 | 3.2:+12589021 | MS.gene97625:CDS |
| GGGTTTGACAAGGTCGGTGG+TGG | 0.475442 | 3.2:+12586883 | MS.gene97625:CDS |
| CCATTCATAATCAATGTTGA+CGG | 0.488564 | 3.2:-12587083 | None:intergenic |
| CGGTGCACATCGGCCATGAC+AGG | 0.497947 | 3.2:+12587058 | MS.gene97625:CDS |
| TAATTCCAATAGTTCTATGA+AGG | 0.500068 | 3.2:+12586924 | MS.gene97625:CDS |
| CCTATCTATTATTCTTGAAG+AGG | 0.505628 | 3.2:+12587488 | MS.gene97625:CDS |
| CCGTCAACATTGATTATGAA+TGG | 0.508279 | 3.2:+12587083 | MS.gene97625:CDS |
| AAGGGACAATAATACCCGTC+TGG | 0.509493 | 3.2:-12589124 | None:intergenic |
| GCAGCCACAAACCGCACCAC+AGG | 0.522063 | 3.2:-12589002 | None:intergenic |
| AATGTTGACGGTTCCTGTCA+TGG | 0.526743 | 3.2:-12587071 | None:intergenic |
| AAATAAGATTAGTTCAATGT+TGG | 0.527292 | 3.2:+12587428 | MS.gene97625:CDS |
| TACAGAGGTGGTGACGGTGC+CGG | 0.530891 | 3.2:+12586835 | MS.gene97625:CDS |
| GCGGTTTGTGGCTGCAGCAG+TGG | 0.550530 | 3.2:+12589010 | MS.gene97625:CDS |
| GGTTAAGACTGAACAATGGC+AGG | 0.551228 | 3.2:+12586802 | None:intergenic |
| GCTGGTGGTGGCCTGTCCTG+TGG | 0.559356 | 3.2:+12588986 | MS.gene97625:CDS |
| AATGGTGGGTTTGACAAGGT+CGG | 0.560867 | 3.2:+12586877 | MS.gene97625:CDS |
| GGGGTCGCCGCGGTGCACAT+CGG | 0.563740 | 3.2:+12587048 | MS.gene97625:CDS |
| AATGCTACATATTATGCAAG+AGG | 0.567388 | 3.2:+12587298 | MS.gene97625:CDS |
| GCAGTGGCAGTTAGCAGGTG+CGG | 0.571360 | 3.2:+12589026 | MS.gene97625:CDS |
| TGACAAGGTCGGTGGTGGAG+TGG | 0.576900 | 3.2:+12586888 | MS.gene97625:CDS |
| AAGAATAATAGATAGGCAGA+TGG | 0.581390 | 3.2:-12587481 | None:intergenic |
| TTTGAATGGTGGGTTTGACA+AGG | 0.593014 | 3.2:+12586873 | MS.gene97625:CDS |
| GGTGGGTTTGACAAGGTCGG+TGG | 0.594855 | 3.2:+12586880 | MS.gene97625:CDS |
| TGGTGGCCTGTCCTGTGGTG+CGG | 0.603802 | 3.2:+12588991 | MS.gene97625:CDS |
| TGAAGTACATCTATTCCAGA+CGG | 0.614286 | 3.2:+12589109 | MS.gene97625:CDS |
| GAAGTACATCTATTCCAGAC+GGG | 0.616282 | 3.2:+12589110 | MS.gene97625:CDS |
| ATGTTGGTTTGCTTTCAAAG+AGG | 0.616684 | 3.2:+12587444 | MS.gene97625:CDS |
| GGTGGTTACAGAGGTGGTGA+CGG | 0.620169 | 3.2:+12586829 | MS.gene97625:CDS |
| TGAACAATGGCAGGATTCGG+TGG | 0.629242 | 3.2:+12586811 | None:intergenic |
| CGGTGCCGGAAGTGGAACAA+AGG | 0.631452 | 3.2:+12586849 | MS.gene97625:CDS |
| GCAGGATTCGGTGGTTACAG+AGG | 0.637049 | 3.2:+12586820 | MS.gene97625:CDS |
| GGATTCGGTGGTTACAGAGG+TGG | 0.643969 | 3.2:+12586823 | MS.gene97625:CDS |
| AATAATAGATAGGCAGATGG+AGG | 0.658645 | 3.2:-12587478 | None:intergenic |
| GATTAGAGGAGGGGTCGCCG+CGG | 0.702663 | 3.2:+12587038 | MS.gene97625:CDS |
| GTCATGGCCGATGTGCACCG+CGG | 0.749893 | 3.2:-12587055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTAATAAGTTAGAT+GGG | + | chr3.2:12588468-12588487 | MS.gene97625:intron | 10.0% |
| !!! | ATATTGATTCTATAAATTAA+AGG | + | chr3.2:12587907-12587926 | MS.gene97625:intron | 10.0% |
| !!! | TAAATTTTTAATAAGTTAGA+TGG | + | chr3.2:12588467-12588486 | MS.gene97625:intron | 10.0% |
| !! | TATTTATTTGTTTCATTCAT+TGG | - | chr3.2:12587995-12588014 | None:intergenic | 15.0% |
| !!! | ATTTTTGTAGAAATTTCTAA+TGG | + | chr3.2:12588697-12588716 | MS.gene97625:intron | 15.0% |
| !!! | TTTGTGAATTTATTTTAAAC+AGG | + | chr3.2:12586997-12587016 | MS.gene97625:intron | 15.0% |
| !! | AATAAATTCACAAAGAGAAA+TGG | - | chr3.2:12586991-12587010 | None:intergenic | 20.0% |
| !! | ATAAAACTATATTTCAGCTT+AGG | + | chr3.2:12587721-12587740 | MS.gene97625:intron | 20.0% |
| !! | ATAAATTCACAAAGAGAAAT+GGG | - | chr3.2:12586990-12587009 | None:intergenic | 20.0% |
| !! | ATAAGCAAAAAAGTTTATCT+TGG | - | chr3.2:12588758-12588777 | None:intergenic | 20.0% |
| !!! | AAACATCATTTTATTTTCCT+AGG | + | chr3.2:12587798-12587817 | MS.gene97625:intron | 20.0% |
| !!! | AAATAAGATTAGTTCAATGT+TGG | + | chr3.2:12587428-12587447 | MS.gene97625:CDS | 20.0% |
| !!! | ATTGTTTTTTTCATTCTATC+CGG | + | chr3.2:12588619-12588638 | MS.gene97625:intron | 20.0% |
| ! | ATAACCTATGAAAAACCATA+AGG | - | chr3.2:12588549-12588568 | None:intergenic | 25.0% |
| ! | CAATTAAAGAAGGAAATTTG+AGG | - | chr3.2:12588143-12588162 | None:intergenic | 25.0% |
| ! | CATAGAACTATTGGAATTAA+CGG | - | chr3.2:12586923-12586942 | None:intergenic | 25.0% |
| ! | TGATTGAACTAATGTTTGAA+TGG | + | chr3.2:12587744-12587763 | MS.gene97625:intron | 25.0% |
| !! | TAATTCCAATAGTTCTATGA+AGG | + | chr3.2:12586924-12586943 | MS.gene97625:CDS | 25.0% |
| !! | TCAAAATAACCTCTTTTATG+AGG | + | chr3.2:12587966-12587985 | MS.gene97625:intron | 25.0% |
| !!! | AACTTGAAAGTTGATAATGT+TGG | + | chr3.2:12587942-12587961 | MS.gene97625:intron | 25.0% |
| !!! | CAACTTTCAAGTTAATTTCA+AGG | - | chr3.2:12587935-12587954 | None:intergenic | 25.0% |
| !!! | GCTGAAATATAGTTTTATCA+AGG | - | chr3.2:12587719-12587738 | None:intergenic | 25.0% |
| AAAGTCAAACACATAGGTAA+AGG | - | chr3.2:12587566-12587585 | None:intergenic | 30.0% | |
| AAATCACATAAATAAGGGTC+TGG | + | chr3.2:12587249-12587268 | MS.gene97625:intron | 30.0% | |
| AACGATCATGCAATTAAAGA+AGG | - | chr3.2:12588153-12588172 | None:intergenic | 30.0% | |
| AAGAATAATAGATAGGCAGA+TGG | - | chr3.2:12587484-12587503 | None:intergenic | 30.0% | |
| AATGCTACATATTATGCAAG+AGG | + | chr3.2:12587298-12587317 | MS.gene97625:CDS | 30.0% | |
| AGAAGATAACTCCAAATAAG+AGG | - | chr3.2:12587118-12587137 | None:intergenic | 30.0% | |
| ATATGTAGCATTTGCAATTG+AGG | - | chr3.2:12587290-12587309 | None:intergenic | 30.0% | |
| ATGCAATAAACTGACAACAA+TGG | - | chr3.2:12587223-12587242 | None:intergenic | 30.0% | |
| ATTGCAAAAGTCAAACACAT+AGG | - | chr3.2:12587572-12587591 | None:intergenic | 30.0% | |
| CCATTCATAATCAATGTTGA+CGG | - | chr3.2:12587086-12587105 | None:intergenic | 30.0% | |
| CCTATCTATTATTCTTGAAG+AGG | + | chr3.2:12587488-12587507 | MS.gene97625:CDS | 30.0% | |
| CCTCTTCAAGAATAATAGAT+AGG | - | chr3.2:12587491-12587510 | None:intergenic | 30.0% | |
| CTCCCAAATCACATAAATAA+GGG | + | chr3.2:12587244-12587263 | MS.gene97625:intron | 30.0% | |
| TTGAATGGAGATTAATAGCA+TGG | + | chr3.2:12587759-12587778 | MS.gene97625:intron | 30.0% | |
| ! | AGACCCTTATTTATGTGATT+TGG | - | chr3.2:12587250-12587269 | None:intergenic | 30.0% |
| ! | GAATCCTTATGGTTTTTCAT+AGG | + | chr3.2:12588542-12588561 | MS.gene97625:intron | 30.0% |
| ! | GACCCTTATTTATGTGATTT+GGG | - | chr3.2:12587249-12587268 | None:intergenic | 30.0% |
| !! | TATGTGTTTGACTTTTGCAA+TGG | + | chr3.2:12587571-12587590 | MS.gene97625:intron | 30.0% |
| !!! | TTTTTTGCGTTGAATCCTTA+TGG | + | chr3.2:12588531-12588550 | MS.gene97625:intron | 30.0% |
| AATAATAGATAGGCAGATGG+AGG | - | chr3.2:12587481-12587500 | None:intergenic | 35.0% | |
| ACTATAAGTGATGTCTCAAG+AGG | - | chr3.2:12588390-12588409 | None:intergenic | 35.0% | |
| AGGTCATGATGTGATTAAAC+AGG | + | chr3.2:12586944-12586963 | MS.gene97625:intron | 35.0% | |
| ATCAGAAAAAGTGACTCCAA+GGG | - | chr3.2:12588070-12588089 | None:intergenic | 35.0% | |
| CAATTATTTCGTCGATCTCA+AGG | + | chr3.2:12588184-12588203 | MS.gene97625:intron | 35.0% | |
| CACGCATTAAAAATGTGCTT+TGG | - | chr3.2:12588826-12588845 | None:intergenic | 35.0% | |
| CATGACCTTCATAGAACTAT+TGG | - | chr3.2:12586932-12586951 | None:intergenic | 35.0% | |
| CATTCAATTTGTGCAGTATG+AGG | + | chr3.2:12587329-12587348 | MS.gene97625:CDS | 35.0% | |
| CTATCAAACCATTGCAAGAA+GGG | - | chr3.2:12587865-12587884 | None:intergenic | 35.0% | |
| CTTGAGATCGACGAAATAAT+TGG | - | chr3.2:12588186-12588205 | None:intergenic | 35.0% | |
| GATAACTCCAAATAAGAGGA+AGG | - | chr3.2:12587114-12587133 | None:intergenic | 35.0% | |
| GCTCCCAAATCACATAAATA+AGG | + | chr3.2:12587243-12587262 | MS.gene97625:intron | 35.0% | |
| GGATTCAACGCAAAAAAAGA+AGG | - | chr3.2:12588528-12588547 | None:intergenic | 35.0% | |
| TATCAAACCATTGCAAGAAG+GGG | - | chr3.2:12587864-12587883 | None:intergenic | 35.0% | |
| TGAAGTACATCTATTCCAGA+CGG | + | chr3.2:12589109-12589128 | MS.gene97625:CDS | 35.0% | |
| TGAGACATCACTTATAGTGT+TGG | + | chr3.2:12588392-12588411 | MS.gene97625:intron | 35.0% | |
| ! | AAACAGGATACTGCATCTTT+TGG | + | chr3.2:12587013-12587032 | MS.gene97625:intron | 35.0% |
| ! | AAATTTGAGGCAAGTGTGAT+GGG | - | chr3.2:12588130-12588149 | None:intergenic | 35.0% |
| ! | AGCTTATGTTGTTATTCAGC+TGG | + | chr3.2:12589067-12589086 | MS.gene97625:CDS | 35.0% |
| ! | ATCATGAGTCACTTTGTCTA+TGG | + | chr3.2:12588354-12588373 | MS.gene97625:intron | 35.0% |
| ! | CAAAGCACATTTTTAATGCG+TGG | + | chr3.2:12588824-12588843 | MS.gene97625:intron | 35.0% |
| ! | CCGTCAACATTGATTATGAA+TGG | + | chr3.2:12587083-12587102 | MS.gene97625:CDS | 35.0% |
| ! | GATTAATAGCATGGACTAAG+AGG | + | chr3.2:12587768-12587787 | MS.gene97625:intron | 35.0% |
| ! | TTATTTTCCTAGGTCAGCTT+AGG | + | chr3.2:12587808-12587827 | MS.gene97625:intron | 35.0% |
| !! | ATGTTGGTTTGCTTTCAAAG+AGG | + | chr3.2:12587444-12587463 | MS.gene97625:CDS | 35.0% |
| !! | CATTGGTTTCCTCATAAAAG+AGG | - | chr3.2:12587978-12587997 | None:intergenic | 35.0% |
| !!! | AGTGGAACAAAGGTTTTGAA+TGG | + | chr3.2:12586859-12586878 | MS.gene97625:CDS | 35.0% |
| !!! | GAACAAAGGTTTTGAATGGT+GGG | + | chr3.2:12586863-12586882 | MS.gene97625:CDS | 35.0% |
| !!! | TTTTTTTCATTCTATCCGGC+AGG | + | chr3.2:12588623-12588642 | MS.gene97625:intron | 35.0% |
| ATCAAACCATTGCAAGAAGG+GGG | - | chr3.2:12587863-12587882 | None:intergenic | 40.0% | |
| ATTCGATGTCGTAGTCGAAT+TGG | + | chr3.2:12588223-12588242 | MS.gene97625:intron | 40.0% | |
| CAAAACCTTTGTTCCACTTC+CGG | - | chr3.2:12586857-12586876 | None:intergenic | 40.0% | |
| CAAGAAGACAACAATGTTGC+AGG | - | chr3.2:12588284-12588303 | None:intergenic | 40.0% | |
| CACATAAATAAGGGTCTGGA+AGG | + | chr3.2:12587253-12587272 | MS.gene97625:intron | 40.0% | |
| CATCAGAAAAAGTGACTCCA+AGG | - | chr3.2:12588071-12588090 | None:intergenic | 40.0% | |
| GAAGTACATCTATTCCAGAC+GGG | + | chr3.2:12589110-12589129 | MS.gene97625:CDS | 40.0% | |
| GCAATGAAGCCAATTCAACT+CGG | - | chr3.2:12588255-12588274 | None:intergenic | 40.0% | |
| GCTATCAAACCATTGCAAGA+AGG | - | chr3.2:12587866-12587885 | None:intergenic | 40.0% | |
| TCATCAAGATATCCAACCCT+TGG | + | chr3.2:12588051-12588070 | MS.gene97625:intron | 40.0% | |
| ! | ATGTGCTTTGGATCGATTAG+TGG | - | chr3.2:12588814-12588833 | None:intergenic | 40.0% |
| ! | ATTGTCCCTTTTTCTTCGAG+TGG | + | chr3.2:12589137-12589156 | MS.gene97625:CDS | 40.0% |
| ! | CGTAATACTCTGATTTGCAC+TGG | + | chr3.2:12588495-12588514 | MS.gene97625:intron | 40.0% |
| ! | GAAATTTGAGGCAAGTGTGA+TGG | - | chr3.2:12588131-12588150 | None:intergenic | 40.0% |
| !! | TTTGAATGGTGGGTTTGACA+AGG | + | chr3.2:12586873-12586892 | MS.gene97625:CDS | 40.0% |
| !!! | ATCTTTTGGTGGATTAGAGG+AGG | + | chr3.2:12587027-12587046 | MS.gene97625:CDS | 40.0% |
| !!! | GGAACAAAGGTTTTGAATGG+TGG | + | chr3.2:12586862-12586881 | MS.gene97625:CDS | 40.0% |
| !!! | GGAGTCACTTTTTCTGATGT+TGG | + | chr3.2:12588072-12588091 | MS.gene97625:intron | 40.0% |
| !!! | TCTTTTGGTGGATTAGAGGA+GGG | + | chr3.2:12587028-12587047 | MS.gene97625:CDS | 40.0% |
| !!! | TGCATCTTTTGGTGGATTAG+AGG | + | chr3.2:12587024-12587043 | MS.gene97625:CDS | 40.0% |
| !!! | TGGTTTTTTTGGTCCTGTCA+TGG | + | chr3.2:12588942-12588961 | MS.gene97625:intron | 40.0% |
| !!! | TTTTTTCCCCCTTCTTGCAA+TGG | + | chr3.2:12587854-12587873 | MS.gene97625:intron | 40.0% |
| AAGGGACAATAATACCCGTC+TGG | - | chr3.2:12589127-12589146 | None:intergenic | 45.0% | |
| AATGTTGACGGTTCCTGTCA+TGG | - | chr3.2:12587074-12587093 | None:intergenic | 45.0% | |
| GAAAAAGTGACTCCAAGGGT+TGG | - | chr3.2:12588066-12588085 | None:intergenic | 45.0% | |
| GCTGGTGTCTTTATGCTGAA+GGG | + | chr3.2:12588917-12588936 | MS.gene97625:intron | 45.0% | |
| GGTAGTGCCTTCCTCTTATT+TGG | + | chr3.2:12587104-12587123 | MS.gene97625:intron | 45.0% | |
| GTCGATCTCAAGGTTGTTGT+TGG | + | chr3.2:12588194-12588213 | MS.gene97625:intron | 45.0% | |
| TAAGCAAATCCTCAACCTGC+CGG | - | chr3.2:12588641-12588660 | None:intergenic | 45.0% | |
| TCAACGTTTGCGATTCTTCG+TGG | + | chr3.2:12588672-12588691 | MS.gene97625:intron | 45.0% | |
| TGCTGGTGTCTTTATGCTGA+AGG | + | chr3.2:12588916-12588935 | MS.gene97625:intron | 45.0% | |
| TGTCTTTATGCTGAAGGGAC+TGG | + | chr3.2:12588922-12588941 | MS.gene97625:intron | 45.0% | |
| TTCAGCATAAAGACACCAGC+AGG | - | chr3.2:12588917-12588936 | None:intergenic | 45.0% | |
| ! | AGCATGGACTAAGAGGCTTT+GGG | + | chr3.2:12587775-12587794 | MS.gene97625:intron | 45.0% |
| ! | AGGTTGAGGATTTGCTTAGG+AGG | + | chr3.2:12588643-12588662 | MS.gene97625:intron | 45.0% |
| ! | CAGGATACTGCATCTTTTGG+TGG | + | chr3.2:12587016-12587035 | MS.gene97625:intron | 45.0% |
| ! | GATCTCAAGGTTGTTGTTGG+TGG | + | chr3.2:12588197-12588216 | MS.gene97625:intron | 45.0% |
| ! | GTCACTTTGTCTATGGCAAG+AGG | + | chr3.2:12588361-12588380 | MS.gene97625:intron | 45.0% |
| ! | TAGCATGGACTAAGAGGCTT+TGG | + | chr3.2:12587774-12587793 | MS.gene97625:intron | 45.0% |
| ! | TGGTTGTGTCCGAGTTGAAT+TGG | + | chr3.2:12588243-12588262 | MS.gene97625:intron | 45.0% |
| !! | AATGGTGGGTTTGACAAGGT+CGG | + | chr3.2:12586877-12586896 | MS.gene97625:CDS | 45.0% |
| !!! | AATGCGTGGAGTGCTGTTTT+TGG | + | chr3.2:12588838-12588857 | MS.gene97625:intron | 45.0% |
| !!! | CTTTTGGTGGATTAGAGGAG+GGG | + | chr3.2:12587029-12587048 | MS.gene97625:CDS | 45.0% |
| !!! | GCTGAAGGGACTGGTTTTTT+TGG | + | chr3.2:12588931-12588950 | MS.gene97625:intron | 45.0% |
| !! | AAATTTATATAACATAAATT+CGG | - | chr3.2:12588454-12588473 | None:intergenic | 5.0% |
| !! | AATATAATAAAAGTTTAAAT+TGG | + | chr3.2:12588011-12588030 | MS.gene97625:intron | 5.0% |
| AGCAAAACTGCAGCCATGAC+AGG | - | chr3.2:12588958-12588977 | None:intergenic | 50.0% | |
| CCAATCACCTAAGCTGACCT+AGG | - | chr3.2:12587818-12587837 | None:intergenic | 50.0% | |
| CCTAGGTCAGCTTAGGTGAT+TGG | + | chr3.2:12587815-12587834 | MS.gene97625:intron | 50.0% | |
| CTTCCTGCTGTGTGCAAATG+TGG | + | chr3.2:12588891-12588910 | MS.gene97625:intron | 50.0% | |
| TCATTCTATCCGGCAGGTTG+AGG | + | chr3.2:12588629-12588648 | MS.gene97625:intron | 50.0% | |
| ! | GGCAGGTTGAGGATTTGCTT+AGG | + | chr3.2:12588640-12588659 | MS.gene97625:intron | 50.0% |
| !!! | GTGCTGTTTTTGGAGTGCAG+CGG | + | chr3.2:12588848-12588867 | MS.gene97625:intron | 50.0% |
| !!! | TGGCTGCAGTTTTGCTGTTG+CGG | + | chr3.2:12588962-12588981 | MS.gene97625:intron | 50.0% |
| !!! | TGTTTTTGGAGTGCAGCGGT+GGG | + | chr3.2:12588852-12588871 | MS.gene97625:intron | 50.0% |
| AGGCCACATTTGCACACAGC+AGG | - | chr3.2:12588897-12588916 | None:intergenic | 55.0% | |
| GGTGGTTACAGAGGTGGTGA+CGG | + | chr3.2:12586829-12586848 | MS.gene97625:CDS | 55.0% | |
| TGTGTGCAAATGTGGCCTGC+TGG | + | chr3.2:12588899-12588918 | MS.gene97625:intron | 55.0% | |
| !! | GCAGGATTCGGTGGTTACAG+AGG | + | chr3.2:12586820-12586839 | MS.gene97625:CDS | 55.0% |
| !! | GGATTCGGTGGTTACAGAGG+TGG | + | chr3.2:12586823-12586842 | MS.gene97625:CDS | 55.0% |
| !!! | CAGTTTTGCTGTTGCGGTGC+TGG | + | chr3.2:12588968-12588987 | MS.gene97625:intron | 55.0% |
| !!! | CTGTTTTTGGAGTGCAGCGG+TGG | + | chr3.2:12588851-12588870 | MS.gene97625:intron | 55.0% |
| !!! | GTTTTTGGAGTGCAGCGGTG+GGG | + | chr3.2:12588853-12588872 | MS.gene97625:intron | 55.0% |
| !!! | TTTTGCTGTTGCGGTGCTGG+TGG | + | chr3.2:12588971-12588990 | MS.gene97625:CDS | 55.0% |
| !!! | TTTTTGGAGTGCAGCGGTGG+GGG | + | chr3.2:12588854-12588873 | MS.gene97625:intron | 55.0% |
| CACAAACCGCACCACAGGAC+AGG | - | chr3.2:12589000-12589019 | None:intergenic | 60.0% | |
| CTGCAGCAGTGGCAGTTAGC+AGG | + | chr3.2:12589021-12589040 | MS.gene97625:CDS | 60.0% | |
| CTGTCCTGTGGTGCGGTTTG+TGG | + | chr3.2:12588998-12589017 | MS.gene97625:CDS | 60.0% | |
| GCAGTGGCAGTTAGCAGGTG+CGG | + | chr3.2:12589026-12589045 | MS.gene97625:CDS | 60.0% | |
| GGGTTTGACAAGGTCGGTGG+TGG | + | chr3.2:12586883-12586902 | MS.gene97625:CDS | 60.0% | |
| ! | CGGTGCCGGAAGTGGAACAA+AGG | + | chr3.2:12586849-12586868 | MS.gene97625:CDS | 60.0% |
| ! | GGTGGGTTTGACAAGGTCGG+TGG | + | chr3.2:12586880-12586899 | MS.gene97625:CDS | 60.0% |
| !! | TACAGAGGTGGTGACGGTGC+CGG | + | chr3.2:12586835-12586854 | MS.gene97625:CDS | 60.0% |
| !! | TGACAAGGTCGGTGGTGGAG+TGG | + | chr3.2:12586888-12586907 | MS.gene97625:CDS | 60.0% |
| CGGTGCACATCGGCCATGAC+AGG | + | chr3.2:12587058-12587077 | MS.gene97625:CDS | 65.0% | |
| GATTAGAGGAGGGGTCGCCG+CGG | + | chr3.2:12587038-12587057 | MS.gene97625:CDS | 65.0% | |
| GCAGCCACAAACCGCACCAC+AGG | - | chr3.2:12589005-12589024 | None:intergenic | 65.0% | |
| GCGGTTTGTGGCTGCAGCAG+TGG | + | chr3.2:12589010-12589029 | MS.gene97625:CDS | 65.0% | |
| GTCATGGCCGATGTGCACCG+CGG | - | chr3.2:12587058-12587077 | None:intergenic | 65.0% | |
| TGGTGGCCTGTCCTGTGGTG+CGG | + | chr3.2:12588991-12589010 | MS.gene97625:CDS | 65.0% | |
| ! | CGGTGGGGGTTGGGGGTTTT+GGG | + | chr3.2:12588868-12588887 | MS.gene97625:intron | 65.0% |
| !! | TGCTGTTGCGGTGCTGGTGG+TGG | + | chr3.2:12588974-12588993 | MS.gene97625:CDS | 65.0% |
| AGTGCAGCGGTGGGGGTTGG+GGG | + | chr3.2:12588861-12588880 | MS.gene97625:intron | 70.0% | |
| GAGTGCAGCGGTGGGGGTTG+GGG | + | chr3.2:12588860-12588879 | MS.gene97625:intron | 70.0% | |
| GGAGTGCAGCGGTGGGGGTT+GGG | + | chr3.2:12588859-12588878 | MS.gene97625:intron | 70.0% | |
| TGGAGTGCAGCGGTGGGGGT+TGG | + | chr3.2:12588858-12588877 | MS.gene97625:intron | 70.0% | |
| ! | GCGGTGGGGGTTGGGGGTTT+TGG | + | chr3.2:12588867-12588886 | MS.gene97625:intron | 70.0% |
| !! | GCTGGTGGTGGCCTGTCCTG+TGG | + | chr3.2:12588986-12589005 | MS.gene97625:CDS | 70.0% |
| !! | GGTGGTGACGGTGCCGGAAG+TGG | + | chr3.2:12586841-12586860 | MS.gene97625:CDS | 70.0% |
| GGGGTCGCCGCGGTGCACAT+CGG | + | chr3.2:12587048-12587067 | MS.gene97625:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 12586817 | 12589163 | 12586817 | ID=MS.gene97625 |
| chr3.2 | mRNA | 12586817 | 12589163 | 12586817 | ID=MS.gene97625.t1;Parent=MS.gene97625 |
| chr3.2 | exon | 12586817 | 12586945 | 12586817 | ID=MS.gene97625.t1.exon1;Parent=MS.gene97625.t1 |
| chr3.2 | CDS | 12586817 | 12586945 | 12586817 | ID=cds.MS.gene97625.t1;Parent=MS.gene97625.t1 |
| chr3.2 | exon | 12587019 | 12587104 | 12587019 | ID=MS.gene97625.t1.exon2;Parent=MS.gene97625.t1 |
| chr3.2 | CDS | 12587019 | 12587104 | 12587019 | ID=cds.MS.gene97625.t1;Parent=MS.gene97625.t1 |
| chr3.2 | exon | 12587275 | 12587350 | 12587275 | ID=MS.gene97625.t1.exon3;Parent=MS.gene97625.t1 |
| chr3.2 | CDS | 12587275 | 12587350 | 12587275 | ID=cds.MS.gene97625.t1;Parent=MS.gene97625.t1 |
| chr3.2 | exon | 12587415 | 12587509 | 12587415 | ID=MS.gene97625.t1.exon4;Parent=MS.gene97625.t1 |
| chr3.2 | CDS | 12587415 | 12587509 | 12587415 | ID=cds.MS.gene97625.t1;Parent=MS.gene97625.t1 |
| chr3.2 | exon | 12588971 | 12589163 | 12588971 | ID=MS.gene97625.t1.exon5;Parent=MS.gene97625.t1 |
| chr3.2 | CDS | 12588971 | 12589163 | 12588971 | ID=cds.MS.gene97625.t1;Parent=MS.gene97625.t1 |
| Gene Sequence |
| Protein sequence |
