Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97797.t1 | PNX87313.1 | 70.1 | 134 | 40 | 0 | 149 | 282 | 240 | 373 | 1.90E-45 | 193 |
| MS.gene97797.t1 | PNX87313.1 | 61.4 | 44 | 17 | 0 | 106 | 149 | 130 | 173 | 2.00E-05 | 60.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97797.t1 | A0A392LZT0 | 71.5 | 137 | 39 | 0 | 149 | 285 | 26 | 162 | 2.0e-47 | 199.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049701 | MS.gene97797 | 0.823468 | 1.36E-53 | -1.69E-46 |
| MS.gene051710 | MS.gene97797 | 0.84174 | 3.96E-58 | -1.69E-46 |
| MS.gene052456 | MS.gene97797 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene054801 | MS.gene97797 | 0.825069 | 5.73E-54 | -1.69E-46 |
| MS.gene058515 | MS.gene97797 | 0.866838 | 2.13E-65 | -1.69E-46 |
| MS.gene059276 | MS.gene97797 | 0.835396 | 1.72E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGATGGTTTGCATTAT+TGG | 0.138305 | 3.4:-17630966 | MS.gene97797:CDS |
| CAATGATGGTTTGCATTATT+GGG | 0.249894 | 3.4:-17630965 | MS.gene97797:CDS |
| GAAAGTGATGAAGCTTTCTT+AGG | 0.257531 | 3.4:-17632865 | MS.gene97797:CDS |
| GCATTATTGGGATTCTCATT+TGG | 0.320412 | 3.4:-17630953 | MS.gene97797:CDS |
| TGTCTTAGAATGGAACCTAT+TGG | 0.323771 | 3.4:-17631105 | MS.gene97797:intron |
| ACATGCAGATGATGAGGATT+TGG | 0.329267 | 3.4:-17632794 | MS.gene97797:CDS |
| TCAGTGACCCATTGCATTCC+TGG | 0.337222 | 3.4:+17630705 | None:intergenic |
| ACTGGAACATGTAAATTATC+TGG | 0.359467 | 3.4:+17630787 | None:intergenic |
| GGTTGCTAGGCATGCAAATC+TGG | 0.375083 | 3.4:-17630932 | MS.gene97797:CDS |
| CATGGACATCCTTATATGAT+AGG | 0.375391 | 3.4:+17630884 | None:intergenic |
| GGGATTCTCATTTGGTTGCT+AGG | 0.381367 | 3.4:-17630945 | MS.gene97797:CDS |
| ACACCCTTTGCTTCTTGAAC+AGG | 0.385272 | 3.4:+17630738 | None:intergenic |
| GGTTTGCAACCTATCATATA+AGG | 0.399885 | 3.4:-17630893 | MS.gene97797:CDS |
| TTTGCCAAGGAGTCAATTAG+AGG | 0.406502 | 3.4:-17630994 | MS.gene97797:CDS |
| ATTAGAGGTAATTTCAATGA+TGG | 0.423341 | 3.4:-17630979 | MS.gene97797:CDS |
| GGTAGGCTAAAGTCAAAGTA+TGG | 0.424767 | 3.4:-17630823 | MS.gene97797:CDS |
| GATGCGGAAGGGGATGATTA+TGG | 0.429464 | 3.4:-17632991 | MS.gene97797:CDS |
| AGTATGCTATCCACCTCAAC+TGG | 0.435161 | 3.4:+17630769 | None:intergenic |
| ATTACCTCTAATTGACTCCT+TGG | 0.454348 | 3.4:+17630990 | None:intergenic |
| TGTTTCATATTTCCGCTTCA+AGG | 0.490593 | 3.4:-17631391 | MS.gene97797:CDS |
| AAGGGTGTGGAGGTAGCGCC+AGG | 0.496804 | 3.4:-17630723 | MS.gene97797:CDS |
| TGCTCACAACAAATTCCAAT+AGG | 0.499943 | 3.4:+17631090 | None:intergenic |
| AAATATCTAACGGATGAACT+TGG | 0.503889 | 3.4:-17630844 | MS.gene97797:CDS |
| TGAAATTTCCTTGCGATCAA+CGG | 0.504990 | 3.4:+17632816 | None:intergenic |
| GACGGTGAAGCAGATGATAC+TGG | 0.508360 | 3.4:-17632967 | MS.gene97797:CDS |
| ATTGAGAATTAAAATCAGCT+TGG | 0.511014 | 3.4:+17631364 | None:intergenic |
| AAATCTGGTGTATCTTAGTA+AGG | 0.512374 | 3.4:-17630917 | MS.gene97797:CDS |
| CGATTCAGCACTAAAGACTT+AGG | 0.516281 | 3.4:+17631027 | None:intergenic |
| AAGTCAAAGTATGGTGAAGA+AGG | 0.516408 | 3.4:-17630814 | MS.gene97797:CDS |
| TGATTATTCCGTTGATCGCA+AGG | 0.517843 | 3.4:-17632824 | MS.gene97797:CDS |
| AATGATAGTGGTGACGGTGA+AGG | 0.518490 | 3.4:-17632931 | MS.gene97797:CDS |
| TGTTGACGATATTGTAAAGA+TGG | 0.525284 | 3.4:-17632698 | MS.gene97797:CDS |
| GGAGATAGTGGTGACGATGA+AGG | 0.538420 | 3.4:-17632910 | MS.gene97797:CDS |
| CTTCCTGTTCAAGAAGCAAA+GGG | 0.539411 | 3.4:-17630741 | MS.gene97797:CDS |
| TTTACATGTTCCAGTTGAGG+TGG | 0.540673 | 3.4:-17630779 | MS.gene97797:CDS |
| GAGAATGAAGCTGATGCGGA+AGG | 0.541363 | 3.4:-17633003 | MS.gene97797:CDS |
| TCTTCCTGTTCAAGAAGCAA+AGG | 0.542587 | 3.4:-17630742 | MS.gene97797:CDS |
| TAATTTACATGTTCCAGTTG+AGG | 0.544755 | 3.4:-17630782 | MS.gene97797:CDS |
| CTAATTTGAGGTCGCTTGAG+AGG | 0.548218 | 3.4:-17631320 | MS.gene97797:intron |
| CGGTGTTACAGACTAATTTG+AGG | 0.552900 | 3.4:-17631332 | MS.gene97797:CDS |
| GATGATACTGGTGACGGCGA+AGG | 0.560683 | 3.4:-17632955 | MS.gene97797:CDS |
| AGTCTTTAGTGCTGAATCGT+TGG | 0.565841 | 3.4:-17631023 | MS.gene97797:CDS |
| CAGCTTGGACTTCCTTGAAG+CGG | 0.570119 | 3.4:+17631379 | None:intergenic |
| GGTGACGGTGAAGGAGATAG+TGG | 0.572117 | 3.4:-17632922 | MS.gene97797:CDS |
| AAAATATCTAAAATATCTAA+CGG | 0.578690 | 3.4:-17630854 | MS.gene97797:CDS |
| GAATGAAGCTGATGCGGAAG+GGG | 0.582207 | 3.4:-17633001 | MS.gene97797:CDS |
| AATTTCACATGCAGATGATG+AGG | 0.582843 | 3.4:-17632800 | MS.gene97797:CDS |
| GGTAGCGCCAGGAATGCAAT+GGG | 0.585612 | 3.4:-17630712 | MS.gene97797:CDS |
| AGAATGAAGCTGATGCGGAA+GGG | 0.586018 | 3.4:-17633002 | MS.gene97797:CDS |
| TGTTCAAGAAGCAAAGGGTG+TGG | 0.590795 | 3.4:-17630736 | MS.gene97797:CDS |
| AGGTAGCGCCAGGAATGCAA+TGG | 0.594190 | 3.4:-17630713 | MS.gene97797:CDS |
| TCGTTGGTCAATATTTGCCA+AGG | 0.607507 | 3.4:-17631007 | MS.gene97797:CDS |
| GAAGGGGATGATTATGGTGA+CGG | 0.613814 | 3.4:-17632985 | MS.gene97797:CDS |
| ACATGAGAATGAAGCTGATG+CGG | 0.618775 | 3.4:-17633007 | MS.gene97797:CDS |
| TCTGGTGTATCTTAGTAAGG+AGG | 0.621844 | 3.4:-17630914 | MS.gene97797:CDS |
| GAAGGAAATGATAGTGGTGA+CGG | 0.622133 | 3.4:-17632937 | MS.gene97797:CDS |
| GACGGCGAAGGAAATGATAG+TGG | 0.624341 | 3.4:-17632943 | MS.gene97797:CDS |
| TAATTCTCAATATGGGAGTG+CGG | 0.626872 | 3.4:-17631352 | MS.gene97797:CDS |
| GCAGATGATGAGGATTTGGA+CGG | 0.633477 | 3.4:-17632790 | MS.gene97797:CDS |
| ATCTAACGGATGAACTTGGT+AGG | 0.637555 | 3.4:-17630840 | MS.gene97797:CDS |
| GAAGCAGATGATACTGGTGA+CGG | 0.638076 | 3.4:-17632961 | MS.gene97797:CDS |
| TCAAGAAGCAAAGGGTGTGG+AGG | 0.641162 | 3.4:-17630733 | MS.gene97797:CDS |
| GGACGGAAATTCTGACGATG+TGG | 0.703394 | 3.4:-17632773 | MS.gene97797:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATCTAAAATATCTAA+CGG | - | chr3.4:17632872-17632891 | MS.gene97797:CDS | 10.0% |
| !!! | TTAGATATTTTTTATAATCA+TGG | + | chr3.4:17632863-17632882 | None:intergenic | 10.0% |
| !! | CAAGTAATAAAAAATAAGAA+TGG | - | chr3.4:17631167-17631186 | MS.gene97797:intron | 15.0% |
| !! | AAACCAACAGTAAAAATTAT+AGG | + | chr3.4:17631114-17631133 | None:intergenic | 20.0% |
| !! | TAAATGAACTTTATGAGAAA+AGG | - | chr3.4:17632166-17632185 | MS.gene97797:intron | 20.0% |
| !! | TATATCACCATATGTTATTA+TGG | + | chr3.4:17631935-17631954 | None:intergenic | 20.0% |
| !!! | CTGATTTTAATTCTCAATAT+GGG | - | chr3.4:17632367-17632386 | MS.gene97797:intron | 20.0% |
| ! | AATGAAATGGTTGAAAAGTT+TGG | - | chr3.4:17632123-17632142 | MS.gene97797:intron | 25.0% |
| ! | ACCATATGTTATTATGGATA+CGG | + | chr3.4:17631929-17631948 | None:intergenic | 25.0% |
| ! | ATGTCAAAATATAGACAAGA+AGG | - | chr3.4:17632546-17632565 | MS.gene97797:intron | 25.0% |
| ! | ATTAGAGGTAATTTCAATGA+TGG | - | chr3.4:17632747-17632766 | MS.gene97797:CDS | 25.0% |
| ! | ATTGAGAATTAAAATCAGCT+TGG | + | chr3.4:17632365-17632384 | None:intergenic | 25.0% |
| ! | CACTAAAGAAATATTTGAGA+TGG | - | chr3.4:17632446-17632465 | MS.gene97797:intron | 25.0% |
| ! | TTATGAGAAAAGGAAAATGT+GGG | - | chr3.4:17632176-17632195 | MS.gene97797:intron | 25.0% |
| ! | TTGATATAATTACTCAACGT+TGG | - | chr3.4:17631324-17631343 | MS.gene97797:CDS | 25.0% |
| ! | TTTATGAGAAAAGGAAAATG+TGG | - | chr3.4:17632175-17632194 | MS.gene97797:intron | 25.0% |
| ! | TTTGGAAATTTGAAAATCTC+TGG | - | chr3.4:17632100-17632119 | MS.gene97797:intron | 25.0% |
| !! | AAGATTCAAGTTACTAACTT+TGG | - | chr3.4:17631443-17631462 | MS.gene97797:intron | 25.0% |
| !! | ACAAAGAAAAGTGATGTTTT+CGG | - | chr3.4:17631574-17631593 | MS.gene97797:intron | 25.0% |
| !! | TTGCCTATAATTTTTACTGT+TGG | - | chr3.4:17631108-17631127 | MS.gene97797:intron | 25.0% |
| !!! | AGCATACGTCTTTTAAAAAA+TGG | + | chr3.4:17632066-17632085 | None:intergenic | 25.0% |
| !!! | CAAAAATAATTTTCTGGTTG+TGG | + | chr3.4:17631822-17631841 | None:intergenic | 25.0% |
| !!! | GCATACGTCTTTTAAAAAAT+GGG | + | chr3.4:17632065-17632084 | None:intergenic | 25.0% |
| !!! | GCTGATTTTAATTCTCAATA+TGG | - | chr3.4:17632366-17632385 | MS.gene97797:intron | 25.0% |
| !!! | TTTTTTAAAAGACGTATGCT+AGG | - | chr3.4:17632066-17632085 | MS.gene97797:intron | 25.0% |
| AAATCTGGTGTATCTTAGTA+AGG | - | chr3.4:17632809-17632828 | MS.gene97797:CDS | 30.0% | |
| ACATAACCTATGATAACTCT+TGG | + | chr3.4:17631989-17632008 | None:intergenic | 30.0% | |
| ACTGGAACATGTAAATTATC+TGG | + | chr3.4:17632942-17632961 | None:intergenic | 30.0% | |
| ATAGACAAGAAGGTTATGTT+TGG | - | chr3.4:17632556-17632575 | MS.gene97797:intron | 30.0% | |
| ATCAAAGTTACGCAAATGAT+TGG | - | chr3.4:17631476-17631495 | MS.gene97797:intron | 30.0% | |
| ATCAATATGCACACGAAATT+TGG | + | chr3.4:17631309-17631328 | None:intergenic | 30.0% | |
| CAAACATCAATGGATCTTTA+CGG | + | chr3.4:17631637-17631656 | None:intergenic | 30.0% | |
| CATAACCTATGATAACTCTT+GGG | + | chr3.4:17631988-17632007 | None:intergenic | 30.0% | |
| CATATCATGATTGTGATCAA+AGG | + | chr3.4:17631366-17631385 | None:intergenic | 30.0% | |
| CCATATGTTATTATGGATAC+GGG | + | chr3.4:17631928-17631947 | None:intergenic | 30.0% | |
| GAAATCAAGATTACCAATGT+TGG | + | chr3.4:17632040-17632059 | None:intergenic | 30.0% | |
| TAATTTACATGTTCCAGTTG+AGG | - | chr3.4:17632944-17632963 | MS.gene97797:CDS | 30.0% | |
| TCAAAGTTACGCAAATGATT+GGG | - | chr3.4:17631477-17631496 | MS.gene97797:intron | 30.0% | |
| TGTTGACGATATTGTAAAGA+TGG | - | chr3.4:17631028-17631047 | MS.gene97797:CDS | 30.0% | |
| TGTTTCAAATGAGGTTGAAA+GGG | - | chr3.4:17631852-17631871 | MS.gene97797:intron | 30.0% | |
| TTGTTTCAAATGAGGTTGAA+AGG | - | chr3.4:17631851-17631870 | MS.gene97797:intron | 30.0% | |
| ! | AAATATCTAACGGATGAACT+TGG | - | chr3.4:17632882-17632901 | MS.gene97797:CDS | 30.0% |
| ! | AACCTCATTTGAAACAATAG+CGG | + | chr3.4:17631848-17631867 | None:intergenic | 30.0% |
| ! | ATTGATGTTTGTTGCACATA+CGG | - | chr3.4:17631646-17631665 | MS.gene97797:intron | 30.0% |
| ! | ATTTTGTTAAGCACTTCCAT+AGG | - | chr3.4:17632310-17632329 | MS.gene97797:intron | 30.0% |
| ! | CAATGATGGTTTGCATTATT+GGG | - | chr3.4:17632761-17632780 | MS.gene97797:CDS | 30.0% |
| ! | CGGTAGCAAAAATAATTTTC+TGG | + | chr3.4:17631828-17631847 | None:intergenic | 30.0% |
| ! | TAAGGTAGGATTTCTGAAAA+AGG | - | chr3.4:17631529-17631548 | MS.gene97797:intron | 30.0% |
| ! | TCAATGATGGTTTGCATTAT+TGG | - | chr3.4:17632760-17632779 | MS.gene97797:CDS | 30.0% |
| ! | TTTTTCCCAAGAGTTATCAT+AGG | - | chr3.4:17631980-17631999 | MS.gene97797:intron | 30.0% |
| !! | AAAACTTATTCTGGAGTGAT+GGG | - | chr3.4:17631690-17631709 | MS.gene97797:intron | 30.0% |
| !! | TGAAAATCTCTGGAATGAAA+TGG | - | chr3.4:17632110-17632129 | MS.gene97797:intron | 30.0% |
| !!! | AAATAATTTTCTGGTTGTGG+TGG | + | chr3.4:17631819-17631838 | None:intergenic | 30.0% |
| AAGTCAAAGTATGGTGAAGA+AGG | - | chr3.4:17632912-17632931 | MS.gene97797:CDS | 35.0% | |
| AATTTCACATGCAGATGATG+AGG | - | chr3.4:17630926-17630945 | MS.gene97797:CDS | 35.0% | |
| ACATTTGTGTGCAATCTAGA+AGG | - | chr3.4:17631206-17631225 | MS.gene97797:intron | 35.0% | |
| AGTGTATAAACTGACCCATA+TGG | + | chr3.4:17632272-17632291 | None:intergenic | 35.0% | |
| CAAAGTTACGCAAATGATTG+GGG | - | chr3.4:17631478-17631497 | MS.gene97797:intron | 35.0% | |
| CAGAAGAATTTCGAAGTCTT+TGG | - | chr3.4:17631719-17631738 | MS.gene97797:intron | 35.0% | |
| CATATGGTGATATAGCAATG+AGG | - | chr3.4:17631941-17631960 | MS.gene97797:intron | 35.0% | |
| CATGGACATCCTTATATGAT+AGG | + | chr3.4:17632845-17632864 | None:intergenic | 35.0% | |
| CCCGTATCCATAATAACATA+TGG | - | chr3.4:17631925-17631944 | MS.gene97797:intron | 35.0% | |
| GAAAGTGATGAAGCTTTCTT+AGG | - | chr3.4:17630861-17630880 | MS.gene97797:CDS | 35.0% | |
| GCATTATTGGGATTCTCATT+TGG | - | chr3.4:17632773-17632792 | MS.gene97797:CDS | 35.0% | |
| GGAAATATGAAACACACCTA+TGG | + | chr3.4:17632329-17632348 | None:intergenic | 35.0% | |
| GGTACCAAAAGTCATAAACA+AGG | - | chr3.4:17632467-17632486 | MS.gene97797:intron | 35.0% | |
| GGTTTGCAACCTATCATATA+AGG | - | chr3.4:17632833-17632852 | MS.gene97797:CDS | 35.0% | |
| GTATGTGCAACAAACATCAA+TGG | + | chr3.4:17631647-17631666 | None:intergenic | 35.0% | |
| GTTACTAACTTTGGCAATGT+CGG | - | chr3.4:17631452-17631471 | MS.gene97797:intron | 35.0% | |
| GTTATCATAGGTTATGTGCA+TGG | - | chr3.4:17631992-17632011 | MS.gene97797:intron | 35.0% | |
| TAATTCTCAATATGGGAGTG+CGG | - | chr3.4:17632374-17632393 | MS.gene97797:intron | 35.0% | |
| TACCGCTATTGTTTCAAATG+AGG | - | chr3.4:17631843-17631862 | MS.gene97797:intron | 35.0% | |
| TGAAATTTCCTTGCGATCAA+CGG | + | chr3.4:17630913-17630932 | None:intergenic | 35.0% | |
| TGCATGTTCTTGTCTTAGAA+TGG | - | chr3.4:17632611-17632630 | MS.gene97797:intron | 35.0% | |
| TGCTCACAACAAATTCCAAT+AGG | + | chr3.4:17632639-17632658 | None:intergenic | 35.0% | |
| TGTCTTAGAATGGAACCTAT+TGG | - | chr3.4:17632621-17632640 | MS.gene97797:intron | 35.0% | |
| TGTTTCATATTTCCGCTTCA+AGG | - | chr3.4:17632335-17632354 | MS.gene97797:intron | 35.0% | |
| ! | ATGTTTCGAAGCTGCTATTT+AGG | - | chr3.4:17631075-17631094 | MS.gene97797:CDS | 35.0% |
| ! | ATTACCTCTAATTGACTCCT+TGG | + | chr3.4:17632739-17632758 | None:intergenic | 35.0% |
| ! | CAGTTATTGGTTGCAATGAA+GGG | - | chr3.4:17631895-17631914 | MS.gene97797:intron | 35.0% |
| !! | AAACTTATTCTGGAGTGATG+GGG | - | chr3.4:17631691-17631710 | MS.gene97797:intron | 35.0% |
| !! | CAAAACTTATTCTGGAGTGA+TGG | - | chr3.4:17631689-17631708 | MS.gene97797:intron | 35.0% |
| !! | GCTACCTTGTTTATGACTTT+TGG | + | chr3.4:17632474-17632493 | None:intergenic | 35.0% |
| !! | TGTTGGTTTGCAAAGATGAA+CGG | - | chr3.4:17631125-17631144 | MS.gene97797:intron | 35.0% |
| ACACCAGAGAACACAACAAA+TGG | + | chr3.4:17631793-17631812 | None:intergenic | 40.0% | |
| ACATGAGAATGAAGCTGATG+CGG | - | chr3.4:17630719-17630738 | MS.gene97797:CDS | 40.0% | |
| ACATGCAGATGATGAGGATT+TGG | - | chr3.4:17630932-17630951 | MS.gene97797:CDS | 40.0% | |
| CATGCAAATTCATCGTTCGA+TGG | + | chr3.4:17632597-17632616 | None:intergenic | 40.0% | |
| CCACACTTGGTTTCATGTTT+CGG | + | chr3.4:17631278-17631297 | None:intergenic | 40.0% | |
| CGAAATGCAATGACCAACAT+TGG | - | chr3.4:17632024-17632043 | MS.gene97797:intron | 40.0% | |
| CGATTCAGCACTAAAGACTT+AGG | + | chr3.4:17632702-17632721 | None:intergenic | 40.0% | |
| CTTCCTGTTCAAGAAGCAAA+GGG | - | chr3.4:17632985-17633004 | MS.gene97797:CDS | 40.0% | |
| GGTAGGCTAAAGTCAAAGTA+TGG | - | chr3.4:17632903-17632922 | MS.gene97797:CDS | 40.0% | |
| GTAGGCTGCAAAACTTATTC+TGG | - | chr3.4:17631681-17631700 | MS.gene97797:intron | 40.0% | |
| TCGTTGGTCAATATTTGCCA+AGG | - | chr3.4:17632719-17632738 | MS.gene97797:CDS | 40.0% | |
| TCTGGTGTATCTTAGTAAGG+AGG | - | chr3.4:17632812-17632831 | MS.gene97797:CDS | 40.0% | |
| TCTTCCTGTTCAAGAAGCAA+AGG | - | chr3.4:17632984-17633003 | MS.gene97797:CDS | 40.0% | |
| TGAGAAACATTGTGCATTGC+TGG | - | chr3.4:17631391-17631410 | MS.gene97797:CDS | 40.0% | |
| TGATTATTCCGTTGATCGCA+AGG | - | chr3.4:17630902-17630921 | MS.gene97797:CDS | 40.0% | |
| TGCTAGGTGATCATGAAGTT+TGG | - | chr3.4:17632082-17632101 | MS.gene97797:intron | 40.0% | |
| TGTGCAATCTAGAAGGTTTC+AGG | - | chr3.4:17631213-17631232 | MS.gene97797:intron | 40.0% | |
| TGTTGGTCATTGCATTTCGT+AGG | + | chr3.4:17632023-17632042 | None:intergenic | 40.0% | |
| TTTACATGTTCCAGTTGAGG+TGG | - | chr3.4:17632947-17632966 | MS.gene97797:CDS | 40.0% | |
| TTTGCCAAGGAGTCAATTAG+AGG | - | chr3.4:17632732-17632751 | MS.gene97797:CDS | 40.0% | |
| ! | AGTCTTTAGTGCTGAATCGT+TGG | - | chr3.4:17632703-17632722 | MS.gene97797:CDS | 40.0% |
| ! | ATCTAACGGATGAACTTGGT+AGG | - | chr3.4:17632886-17632905 | MS.gene97797:CDS | 40.0% |
| ! | ATGTTTGTTGCACATACGGT+TGG | - | chr3.4:17631650-17631669 | MS.gene97797:intron | 40.0% |
| ! | GCAGTTATTGGTTGCAATGA+AGG | - | chr3.4:17631894-17631913 | MS.gene97797:intron | 40.0% |
| ! | GTGATGTTTTCGGATGCTAA+AGG | - | chr3.4:17631584-17631603 | MS.gene97797:intron | 40.0% |
| ! | TTGGTCTTCAAGAGAACAGA+TGG | - | chr3.4:17632142-17632161 | MS.gene97797:intron | 40.0% |
| !! | CGGTGTTACAGACTAATTTG+AGG | - | chr3.4:17632394-17632413 | MS.gene97797:intron | 40.0% |
| !! | GAAGGAAATGATAGTGGTGA+CGG | - | chr3.4:17630789-17630808 | MS.gene97797:CDS | 40.0% |
| !! | TGTCCATTTGTTGTGTTCTC+TGG | - | chr3.4:17631787-17631806 | MS.gene97797:intron | 40.0% |
| ACACCCTTTGCTTCTTGAAC+AGG | + | chr3.4:17632991-17633010 | None:intergenic | 45.0% | |
| AGAAGGTTTCAGGAGAGACA+GGG | - | chr3.4:17631223-17631242 | MS.gene97797:intron | 45.0% | |
| AGAATGAAGCTGATGCGGAA+GGG | - | chr3.4:17630724-17630743 | MS.gene97797:CDS | 45.0% | |
| AGTATGCTATCCACCTCAAC+TGG | + | chr3.4:17632960-17632979 | None:intergenic | 45.0% | |
| ATTCGGGGAAATTTCTTCGC+AGG | - | chr3.4:17632210-17632229 | MS.gene97797:intron | 45.0% | |
| CCGAAACATGAAACCAAGTG+TGG | - | chr3.4:17631275-17631294 | MS.gene97797:intron | 45.0% | |
| GAAGCAGATGATACTGGTGA+CGG | - | chr3.4:17630765-17630784 | MS.gene97797:CDS | 45.0% | |
| GAAGGGGATGATTATGGTGA+CGG | - | chr3.4:17630741-17630760 | MS.gene97797:CDS | 45.0% | |
| GCAGATGATGAGGATTTGGA+CGG | - | chr3.4:17630936-17630955 | MS.gene97797:CDS | 45.0% | |
| GGGATTCTCATTTGGTTGCT+AGG | - | chr3.4:17632781-17632800 | MS.gene97797:CDS | 45.0% | |
| GTGGTTGCTTGAGCAGTTAT+TGG | - | chr3.4:17631882-17631901 | MS.gene97797:intron | 45.0% | |
| TAGAACAACATCCCGTTGTG+AGG | - | chr3.4:17632236-17632255 | MS.gene97797:intron | 45.0% | |
| TAGAAGGTTTCAGGAGAGAC+AGG | - | chr3.4:17631222-17631241 | MS.gene97797:intron | 45.0% | |
| TGTTCAAGAAGCAAAGGGTG+TGG | - | chr3.4:17632990-17633009 | MS.gene97797:CDS | 45.0% | |
| ! | AGGTTGAAAGGGCATATGTG+TGG | - | chr3.4:17631863-17631882 | MS.gene97797:intron | 45.0% |
| ! | CTAATTTGAGGTCGCTTGAG+AGG | - | chr3.4:17632406-17632425 | MS.gene97797:intron | 45.0% |
| ! | GAGGCGTTTCATAGCCATAT+GGG | - | chr3.4:17632255-17632274 | MS.gene97797:intron | 45.0% |
| ! | GCTGCTATTTAGGAGTCTTG+AGG | - | chr3.4:17631085-17631104 | MS.gene97797:CDS | 45.0% |
| ! | TGAGGCGTTTCATAGCCATA+TGG | - | chr3.4:17632254-17632273 | MS.gene97797:intron | 45.0% |
| ! | TTTGGCTTCACAACCACACT+TGG | + | chr3.4:17631291-17631310 | None:intergenic | 45.0% |
| !! | AACGGTTTTGCTGTGAGGAA+AGG | - | chr3.4:17631143-17631162 | MS.gene97797:intron | 45.0% |
| !! | AATGATAGTGGTGACGGTGA+AGG | - | chr3.4:17630795-17630814 | MS.gene97797:CDS | 45.0% |
| !! | AGATGAACGGTTTTGCTGTG+AGG | - | chr3.4:17631138-17631157 | MS.gene97797:intron | 45.0% |
| AAGGTTTCAGGAGAGACAGG+GGG | - | chr3.4:17631225-17631244 | MS.gene97797:intron | 50.0% | |
| ACAGTAGAGGAACGCAAGCA+TGG | - | chr3.4:17631251-17631270 | MS.gene97797:intron | 50.0% | |
| AGACAGGGGGTTAACAGTAG+AGG | - | chr3.4:17631238-17631257 | MS.gene97797:intron | 50.0% | |
| CAGCTTGGACTTCCTTGAAG+CGG | + | chr3.4:17632350-17632369 | None:intergenic | 50.0% | |
| GAAGGTTTCAGGAGAGACAG+GGG | - | chr3.4:17631224-17631243 | MS.gene97797:intron | 50.0% | |
| GAATGAAGCTGATGCGGAAG+GGG | - | chr3.4:17630725-17630744 | MS.gene97797:CDS | 50.0% | |
| GACGGCGAAGGAAATGATAG+TGG | - | chr3.4:17630783-17630802 | MS.gene97797:CDS | 50.0% | |
| GACGGTGAAGCAGATGATAC+TGG | - | chr3.4:17630759-17630778 | MS.gene97797:CDS | 50.0% | |
| GAGAATGAAGCTGATGCGGA+AGG | - | chr3.4:17630723-17630742 | MS.gene97797:CDS | 50.0% | |
| GATGCGGAAGGGGATGATTA+TGG | - | chr3.4:17630735-17630754 | MS.gene97797:CDS | 50.0% | |
| GCTATGAAACGCCTCACAAC+GGG | + | chr3.4:17632250-17632269 | None:intergenic | 50.0% | |
| GGACGGAAATTCTGACGATG+TGG | - | chr3.4:17630953-17630972 | MS.gene97797:CDS | 50.0% | |
| GGCTATGAAACGCCTCACAA+CGG | + | chr3.4:17632251-17632270 | None:intergenic | 50.0% | |
| GGTTGCTAGGCATGCAAATC+TGG | - | chr3.4:17632794-17632813 | MS.gene97797:CDS | 50.0% | |
| TACCTTATCATACCCGCCAG+CGG | + | chr3.4:17631516-17631535 | None:intergenic | 50.0% | |
| TCAGTGACCCATTGCATTCC+TGG | + | chr3.4:17633024-17633043 | None:intergenic | 50.0% | |
| TGTGGGCAGCGAGTCATATT+CGG | - | chr3.4:17632193-17632212 | MS.gene97797:intron | 50.0% | |
| ! | ATACGGTTGGTGCAGATGGT+AGG | - | chr3.4:17631663-17631682 | MS.gene97797:intron | 50.0% |
| ! | GGAGATAGTGGTGACGATGA+AGG | - | chr3.4:17630816-17630835 | MS.gene97797:CDS | 50.0% |
| ! | TCAAGAAGCAAAGGGTGTGG+AGG | - | chr3.4:17632993-17633012 | MS.gene97797:CDS | 50.0% |
| AGGTAGCGCCAGGAATGCAA+TGG | - | chr3.4:17633013-17633032 | MS.gene97797:CDS | 55.0% | |
| GGTAGCGCCAGGAATGCAAT+GGG | - | chr3.4:17633014-17633033 | MS.gene97797:CDS | 55.0% | |
| GTGGGCAGCGAGTCATATTC+GGG | - | chr3.4:17632194-17632213 | MS.gene97797:intron | 55.0% | |
| TGGGCAGCGAGTCATATTCG+GGG | - | chr3.4:17632195-17632214 | MS.gene97797:intron | 55.0% | |
| ! | GCACATACGGTTGGTGCAGA+TGG | - | chr3.4:17631659-17631678 | MS.gene97797:intron | 55.0% |
| ! | GCTGGCGGGTATGATAAGGT+AGG | - | chr3.4:17631515-17631534 | MS.gene97797:intron | 55.0% |
| ! | GGTGACGGTGAAGGAGATAG+TGG | - | chr3.4:17630804-17630823 | MS.gene97797:CDS | 55.0% |
| ! | GTGCATTGCTGGCTGCTCAT+AGG | - | chr3.4:17631402-17631421 | MS.gene97797:intron | 55.0% |
| !! | GATGATACTGGTGACGGCGA+AGG | - | chr3.4:17630771-17630790 | MS.gene97797:CDS | 55.0% |
| CGTTTGCAAATGCCGCTGGC+GGG | - | chr3.4:17631501-17631520 | MS.gene97797:intron | 60.0% | |
| GCGTTTGCAAATGCCGCTGG+CGG | - | chr3.4:17631500-17631519 | MS.gene97797:intron | 60.0% | |
| ! | TGCCGCTGGCGGGTATGATA+AGG | - | chr3.4:17631511-17631530 | MS.gene97797:intron | 60.0% |
| ! | AAGGGTGTGGAGGTAGCGCC+AGG | - | chr3.4:17633003-17633022 | MS.gene97797:CDS | 65.0% |
| ! | GGGGCGTTTGCAAATGCCGC+TGG | - | chr3.4:17631497-17631516 | MS.gene97797:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 17630705 | 17633043 | 17630705 | ID=MS.gene97797 |
| chr3.4 | mRNA | 17630705 | 17633043 | 17630705 | ID=MS.gene97797.t1;Parent=MS.gene97797 |
| chr3.4 | exon | 17632694 | 17633043 | 17632694 | ID=MS.gene97797.t1.exon1;Parent=MS.gene97797.t1 |
| chr3.4 | CDS | 17632694 | 17633043 | 17632694 | ID=cds.MS.gene97797.t1;Parent=MS.gene97797.t1 |
| chr3.4 | exon | 17631321 | 17631416 | 17631321 | ID=MS.gene97797.t1.exon2;Parent=MS.gene97797.t1 |
| chr3.4 | CDS | 17631321 | 17631416 | 17631321 | ID=cds.MS.gene97797.t1;Parent=MS.gene97797.t1 |
| chr3.4 | exon | 17630705 | 17631119 | 17630705 | ID=MS.gene97797.t1.exon3;Parent=MS.gene97797.t1 |
| chr3.4 | CDS | 17630705 | 17631119 | 17630705 | ID=cds.MS.gene97797.t1;Parent=MS.gene97797.t1 |
| Gene Sequence |
| Protein sequence |
