Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97904.t1 | XP_003620724.3 | 95.3 | 341 | 13 | 1 | 35 | 372 | 9 | 349 | 4.70E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97904.t1 | Q9FLH8 | 77.4 | 323 | 73 | 0 | 44 | 366 | 16 | 338 | 2.1e-141 | 503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97904.t1 | A0A396HJ77 | 95.3 | 341 | 13 | 1 | 35 | 372 | 9 | 349 | 3.4e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97904 | MS.gene052011 | PPI |
| MS.gene28335 | MS.gene97904 | PPI |
| MS.gene46881 | MS.gene97904 | PPI |
| MS.gene85276 | MS.gene97904 | PPI |
| MS.gene032177 | MS.gene97904 | PPI |
| MS.gene97904 | MS.gene003877 | PPI |
| MS.gene98726 | MS.gene97904 | PPI |
| MS.gene056386 | MS.gene97904 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97904.t1 | MTR_6g089480 | 96.190 | 315 | 12 | 0 | 58 | 372 | 1 | 315 | 0.0 | 616 |
| MS.gene97904.t1 | MTR_1g101950 | 86.120 | 317 | 44 | 0 | 49 | 365 | 21 | 337 | 0.0 | 563 |
| MS.gene97904.t1 | MTR_6g089480 | 95.971 | 273 | 11 | 0 | 58 | 330 | 1 | 273 | 0.0 | 535 |
| MS.gene97904.t1 | MTR_6g089480 | 97.037 | 270 | 8 | 0 | 58 | 327 | 1 | 270 | 0.0 | 534 |
| MS.gene97904.t1 | MTR_5g079460 | 75.472 | 318 | 77 | 1 | 49 | 366 | 65 | 381 | 6.23e-167 | 472 |
| MS.gene97904.t1 | MTR_1g076850 | 64.241 | 316 | 111 | 2 | 51 | 366 | 8 | 321 | 1.39e-150 | 428 |
| MS.gene97904.t1 | MTR_7g075860 | 64.465 | 318 | 111 | 1 | 51 | 366 | 41 | 358 | 1.55e-147 | 421 |
| MS.gene97904.t1 | MTR_1g069745 | 70.748 | 294 | 74 | 2 | 72 | 365 | 4 | 285 | 7.51e-145 | 412 |
| MS.gene97904.t1 | MTR_2g098950 | 62.579 | 318 | 117 | 2 | 49 | 366 | 12 | 327 | 8.65e-145 | 413 |
| MS.gene97904.t1 | MTR_1g069490 | 65.635 | 323 | 85 | 2 | 43 | 365 | 102 | 398 | 2.10e-144 | 415 |
| MS.gene97904.t1 | MTR_4g067310 | 62.928 | 321 | 117 | 2 | 49 | 369 | 13 | 331 | 3.92e-144 | 412 |
| MS.gene97904.t1 | MTR_1g057810 | 64.286 | 322 | 109 | 2 | 43 | 364 | 245 | 560 | 1.49e-134 | 396 |
| MS.gene97904.t1 | MTR_1g105150 | 61.180 | 322 | 105 | 3 | 43 | 364 | 245 | 546 | 9.89e-122 | 362 |
| MS.gene97904.t1 | MTR_1g054730 | 57.143 | 273 | 86 | 2 | 93 | 365 | 146 | 387 | 5.62e-97 | 294 |
| MS.gene97904.t1 | MTR_5g044990 | 30.000 | 370 | 216 | 7 | 39 | 368 | 192 | 558 | 1.68e-46 | 167 |
| MS.gene97904.t1 | MTR_0046s0180 | 68.571 | 105 | 33 | 0 | 261 | 365 | 5 | 109 | 2.36e-46 | 154 |
| MS.gene97904.t1 | MTR_4g019165 | 30.790 | 367 | 208 | 7 | 51 | 372 | 93 | 458 | 2.05e-44 | 159 |
| MS.gene97904.t1 | MTR_2g072830 | 26.298 | 289 | 189 | 7 | 82 | 366 | 89 | 357 | 7.28e-13 | 69.3 |
| MS.gene97904.t1 | MTR_1g070375 | 25.321 | 312 | 206 | 8 | 71 | 366 | 108 | 408 | 1.21e-12 | 69.3 |
| MS.gene97904.t1 | MTR_3g112040 | 26.357 | 258 | 174 | 7 | 72 | 325 | 73 | 318 | 6.26e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97904.t1 | AT5G51830 | 77.399 | 323 | 73 | 0 | 44 | 366 | 16 | 338 | 0.0 | 522 |
| MS.gene97904.t1 | AT5G51830 | 77.399 | 323 | 73 | 0 | 44 | 366 | 16 | 338 | 0.0 | 522 |
| MS.gene97904.t1 | AT1G66430 | 70.783 | 332 | 96 | 1 | 40 | 371 | 54 | 384 | 2.35e-169 | 478 |
| MS.gene97904.t1 | AT4G10260 | 67.203 | 311 | 100 | 2 | 48 | 358 | 3 | 311 | 1.19e-153 | 436 |
| MS.gene97904.t1 | AT3G59480 | 64.038 | 317 | 112 | 2 | 50 | 366 | 9 | 323 | 7.67e-147 | 418 |
| MS.gene97904.t1 | AT2G31390 | 62.975 | 316 | 115 | 2 | 51 | 366 | 9 | 322 | 2.04e-143 | 410 |
| MS.gene97904.t1 | AT1G06020 | 61.635 | 318 | 120 | 1 | 51 | 368 | 10 | 325 | 3.57e-142 | 407 |
| MS.gene97904.t1 | AT1G06030 | 61.250 | 320 | 122 | 2 | 47 | 366 | 7 | 324 | 9.64e-142 | 405 |
| MS.gene97904.t1 | AT3G54090 | 33.243 | 367 | 198 | 8 | 51 | 372 | 103 | 467 | 1.27e-51 | 179 |
| MS.gene97904.t1 | AT1G69200 | 33.333 | 288 | 172 | 4 | 77 | 345 | 246 | 532 | 3.16e-46 | 167 |
| MS.gene97904.t1 | AT1G50390 | 47.368 | 171 | 59 | 1 | 196 | 366 | 1 | 140 | 4.36e-45 | 152 |
| MS.gene97904.t1 | AT1G17160 | 25.510 | 294 | 187 | 8 | 82 | 366 | 105 | 375 | 1.74e-12 | 68.6 |
Find 79 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGCCAATCTTAAATT+TGG | 0.189545 | 6.1:+52840798 | None:intergenic |
| CAAATTTAAGATTGGCATTA+TGG | 0.194373 | 6.1:-52840797 | MS.gene97904:CDS |
| GGAATGGCATAATGAGTATA+TGG | 0.253977 | 6.1:-52840755 | MS.gene97904:CDS |
| AATTGTTACTGAAGGGTCTA+AGG | 0.261268 | 6.1:-52840464 | MS.gene97904:CDS |
| TTAAACTAATTGACCCAAAA+TGG | 0.292688 | 6.1:+52840898 | None:intergenic |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6.1:-52841734 | MS.gene97904:CDS |
| TCTTATATTACAGCTGCTTC+TGG | 0.321751 | 6.1:+52838441 | None:intergenic |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6.1:-52841735 | MS.gene97904:CDS |
| CCAGTGAACTTGTTTCCTTA+TGG | 0.328368 | 6.1:+52841748 | None:intergenic |
| TACTAGCGACGCCAACATTT+AGG | 0.346554 | 6.1:-52841912 | MS.gene97904:CDS |
| ACCTCTTTCTGTAACTGTTA+TGG | 0.347968 | 6.1:+52838509 | None:intergenic |
| TTTAGGATTGAAATCGTATA+CGG | 0.351108 | 6.1:-52841895 | MS.gene97904:intron |
| TGCAAAACAGCTTCCATTGT+AGG | 0.361013 | 6.1:+52838471 | None:intergenic |
| CAGAACAATGTCGATACTTC+TGG | 0.361492 | 6.1:-52841166 | MS.gene97904:CDS |
| GAGAATGCAACCAGAACTTT+TGG | 0.364359 | 6.1:+52840830 | None:intergenic |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.375368 | 6.1:-52840840 | MS.gene97904:CDS |
| GGCCGTCTGCCGAGGCTGCT+TGG | 0.375839 | 6.1:-52840776 | MS.gene97904:CDS |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6.1:+52841062 | None:intergenic |
| TAGGTTGGAGCAGATGAATT+TGG | 0.387315 | 6.1:-52841214 | MS.gene97904:CDS |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6.1:-52840733 | MS.gene97904:intron |
| CCAGCACCGGTTGTGTCAAC+AGG | 0.401097 | 6.1:+52839624 | None:intergenic |
| AAAACAACATCATCATCATT+AGG | 0.412207 | 6.1:+52840520 | None:intergenic |
| ATACGATCCAAATTTAAGAT+TGG | 0.426939 | 6.1:-52840805 | MS.gene97904:CDS |
| TGCTGTTGGTATATCTAGAT+TGG | 0.434341 | 6.1:-52841616 | MS.gene97904:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.450276 | 6.1:-52839606 | MS.gene97904:CDS |
| TTCATAGTGTCGTCAGTAAG+AGG | 0.456334 | 6.1:+52841973 | None:intergenic |
| GCTGTTGGTATATCTAGATT+GGG | 0.464108 | 6.1:-52841615 | MS.gene97904:CDS |
| CTGTGCAGGAATTTCGAGGC+AGG | 0.465166 | 6.1:-52839668 | MS.gene97904:intron |
| TCTGCCGAGGCTGCTTGGAA+TGG | 0.474211 | 6.1:-52840771 | MS.gene97904:CDS |
| GTTAAACCTGTTGACACAAC+CGG | 0.483410 | 6.1:-52839630 | MS.gene97904:CDS |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6.1:-52840754 | MS.gene97904:CDS |
| AAACTCTTAATTGTTACTGA+AGG | 0.493747 | 6.1:-52840472 | MS.gene97904:CDS |
| GAATTTCGAGGCAGGGTTGG+AGG | 0.497205 | 6.1:-52839660 | MS.gene97904:CDS |
| TTCCAAGCAGCCTCGGCAGA+CGG | 0.504373 | 6.1:+52840774 | None:intergenic |
| CCAGGAGATTTCTTGAAAGC+CGG | 0.511009 | 6.1:+52841657 | None:intergenic |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6.1:-52841676 | MS.gene97904:CDS |
| TCTTAGAAAAGAAGACCATA+AGG | 0.516761 | 6.1:-52841763 | MS.gene97904:CDS |
| CCGGCTTTCAAGAAATCTCC+TGG | 0.521432 | 6.1:-52841657 | MS.gene97904:CDS |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6.1:-52841733 | MS.gene97904:CDS |
| GCCATAACAGTTACAGAAAG+AGG | 0.530881 | 6.1:-52838510 | MS.gene97904:CDS |
| ACGATTTCAATCCTAAATGT+TGG | 0.531769 | 6.1:+52841901 | None:intergenic |
| AACTCTTAATTGTTACTGAA+GGG | 0.532047 | 6.1:-52840471 | MS.gene97904:CDS |
| AGCTAATGCAGTCCTTGCAT+TGG | 0.532620 | 6.1:+52841129 | None:intergenic |
| ATTGTTACTGAAGGGTCTAA+GGG | 0.532919 | 6.1:-52840463 | MS.gene97904:CDS |
| GGCATTATGGCCGTCTGCCG+AGG | 0.533060 | 6.1:-52840784 | MS.gene97904:CDS |
| AACAAATGCATCACCAGCAC+CGG | 0.534469 | 6.1:+52839611 | None:intergenic |
| CAGGAATTTCGAGGCAGGGT+TGG | 0.538929 | 6.1:-52839663 | MS.gene97904:CDS |
| AGATATACCAACAGCAACAT+TGG | 0.540241 | 6.1:+52841623 | None:intergenic |
| CCTGTTGACACAACCGGTGC+TGG | 0.540265 | 6.1:-52839624 | MS.gene97904:CDS |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6.1:-52841020 | MS.gene97904:intron |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6.1:+52841665 | None:intergenic |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6.1:+52840725 | None:intergenic |
| GCTTCCATTGTAGGAAGTGA+AGG | 0.552139 | 6.1:+52838480 | None:intergenic |
| CCATAAGGAAACAAGTTCAC+TGG | 0.556670 | 6.1:-52841748 | MS.gene97904:CDS |
| ATTTCTGTGCAGGAATTTCG+AGG | 0.557516 | 6.1:-52839672 | MS.gene97904:intron |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6.1:+52841627 | None:intergenic |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6.1:-52841630 | MS.gene97904:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6.1:+52841719 | None:intergenic |
| TGAAGAAGCATATCAGCACT+TGG | 0.569500 | 6.1:+52841055 | None:intergenic |
| CAAGAACTCACGCTCACCGT+CGG | 0.572605 | 6.1:+52841090 | None:intergenic |
| AGCGACACTCCTCCCACAGT+TGG | 0.578152 | 6.1:+52841690 | None:intergenic |
| TATGCCATTCCAAGCAGCCT+CGG | 0.582212 | 6.1:+52840767 | None:intergenic |
| TGTGCAGGAATTTCGAGGCA+GGG | 0.593911 | 6.1:-52839667 | MS.gene97904:intron |
| GTTGGTATATCTAGATTGGG+AGG | 0.595607 | 6.1:-52841612 | MS.gene97904:CDS |
| AATTCCTTCACTTCCTACAA+TGG | 0.604354 | 6.1:-52838484 | MS.gene97904:CDS |
| ACATTGGCAGGAGCTCCACC+AGG | 0.606207 | 6.1:+52841639 | None:intergenic |
| TGAGGTTTGATGCCAATGCA+AGG | 0.607359 | 6.1:-52841141 | MS.gene97904:CDS |
| ATAGACTTTGTGCCAACTGT+GGG | 0.616321 | 6.1:-52841702 | MS.gene97904:CDS |
| AGATGAATTTGGTTACATGT+TGG | 0.618988 | 6.1:-52841203 | MS.gene97904:CDS |
| GACTTTGTGCCAACTGTGGG+AGG | 0.621437 | 6.1:-52841699 | MS.gene97904:CDS |
| GATAGACTTTGTGCCAACTG+TGG | 0.624305 | 6.1:-52841703 | MS.gene97904:CDS |
| CATGTATATACAGATAAGTG+AGG | 0.626485 | 6.1:-52840575 | MS.gene97904:intron |
| TTTGTCACACTTAGATCCGA+CGG | 0.633560 | 6.1:-52841106 | MS.gene97904:CDS |
| ATGTCGATACTTCTGGCATG+AGG | 0.638705 | 6.1:-52841159 | MS.gene97904:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.650456 | 6.1:-52841682 | MS.gene97904:CDS |
| GCTTTCAAGAAATCTCCTGG+TGG | 0.652256 | 6.1:-52841654 | MS.gene97904:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6.1:+52840867 | None:intergenic |
| GTATATACAGATAAGTGAGG+AGG | 0.677503 | 6.1:-52840572 | MS.gene97904:intron |
| GGGTTGTAGATATTACACAA+AGG | 0.751034 | 6.1:-52840443 | MS.gene97904:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAAAAAATTATTGTAAC+CGG | - | chr6.1:52841078-52841097 | MS.gene97904:CDS | 15.0% |
| !!! | AAAAGAGAATATTATTTTAC+TGG | - | chr6.1:52841246-52841265 | MS.gene97904:intron | 15.0% |
| !!! | GAGATTATTTTTTATACAAA+TGG | - | chr6.1:52841434-52841453 | MS.gene97904:intron | 15.0% |
| !!! | GTTACAATAATTTTTTACTA+AGG | + | chr6.1:52841078-52841097 | None:intergenic | 15.0% |
| !!! | TATCTTTGTTTTTTTTTTTG+TGG | + | chr6.1:52840976-52840995 | None:intergenic | 15.0% |
| !! | AACCTAATACACAAATAATA+AGG | + | chr6.1:52839191-52839210 | None:intergenic | 20.0% |
| !! | AAGTTTATGTTTATCCAAAT+TGG | - | chr6.1:52840416-52840435 | MS.gene97904:intron | 20.0% |
| !! | ACATCATATACAAATTGATA+TGG | + | chr6.1:52840010-52840029 | None:intergenic | 20.0% |
| !! | AGTAAAAAATTATTGTAACC+GGG | - | chr6.1:52841079-52841098 | MS.gene97904:CDS | 20.0% |
| !! | ATGCAAATAATTGAATGTAA+TGG | - | chr6.1:52840053-52840072 | MS.gene97904:intron | 20.0% |
| !! | CAAAATCTAAATTAAACCAT+AGG | + | chr6.1:52839469-52839488 | None:intergenic | 20.0% |
| !! | TAGTAAAAAATTATCGTAAC+CGG | - | chr6.1:52841181-52841200 | MS.gene97904:CDS | 20.0% |
| !! | TATTACTAATAACACCAATT+TGG | + | chr6.1:52840433-52840452 | None:intergenic | 20.0% |
| !! | TTATGGAATTATAGTCTATT+TGG | - | chr6.1:52840455-52840474 | MS.gene97904:CDS | 20.0% |
| !! | TTATTATTTGTGTATTAGGT+TGG | - | chr6.1:52839190-52839209 | MS.gene97904:intron | 20.0% |
| !! | TTCCTTATTATTTGTGTATT+AGG | - | chr6.1:52839186-52839205 | MS.gene97904:intron | 20.0% |
| !! | TTTGTTTATTTCATGAAATG+TGG | - | chr6.1:52839436-52839455 | MS.gene97904:intron | 20.0% |
| !!! | ATAATATTTTTACTGGTTTC+TGG | - | chr6.1:52841366-52841385 | MS.gene97904:intron | 20.0% |
| !!! | ATTATATATATTTTCTTGGC+AGG | - | chr6.1:52841839-52841858 | MS.gene97904:intron | 20.0% |
| !!! | GTGTTATTAGTAATAAGTTA+TGG | - | chr6.1:52840438-52840457 | MS.gene97904:intron | 20.0% |
| !!! | GTTACGATAATTTTTTACTA+AGG | + | chr6.1:52841181-52841200 | None:intergenic | 20.0% |
| !!! | TAATATTTTTACTGGTTTCT+GGG | - | chr6.1:52841367-52841386 | MS.gene97904:intron | 20.0% |
| ! | AAAACAACATCATCATCATT+AGG | + | chr6.1:52839902-52839921 | None:intergenic | 25.0% |
| ! | AAACAAACCTGAAAAATACT+CGG | + | chr6.1:52840864-52840883 | None:intergenic | 25.0% |
| ! | AAACATGAACAAAATCTTGA+AGG | + | chr6.1:52838937-52838956 | None:intergenic | 25.0% |
| ! | AAACTCTTAATTGTTACTGA+AGG | - | chr6.1:52839947-52839966 | MS.gene97904:intron | 25.0% |
| ! | AAATTATACACATGATGTAG+TGG | - | chr6.1:52839714-52839733 | MS.gene97904:intron | 25.0% |
| ! | AACTCTTAATTGTTACTGAA+GGG | - | chr6.1:52839948-52839967 | MS.gene97904:intron | 25.0% |
| ! | AACTTATTTAAACGCACATA+TGG | + | chr6.1:52840401-52840420 | None:intergenic | 25.0% |
| ! | AAGCAGAAAATTATTGTAAC+CGG | + | chr6.1:52841122-52841141 | None:intergenic | 25.0% |
| ! | ACTTATTTAAACGCACATAT+GGG | + | chr6.1:52840400-52840419 | None:intergenic | 25.0% |
| ! | AGAGATAAAGGAACTAAAAT+TGG | - | chr6.1:52841412-52841431 | MS.gene97904:intron | 25.0% |
| ! | AGTAAAAAATTATCGTAACC+GGG | - | chr6.1:52841182-52841201 | MS.gene97904:CDS | 25.0% |
| ! | ATCAAATGACAAAAGAAAAG+TGG | + | chr6.1:52839034-52839053 | None:intergenic | 25.0% |
| ! | CATAATGCCAATCTTAAATT+TGG | + | chr6.1:52839624-52839643 | None:intergenic | 25.0% |
| ! | GTAAAAAATTATTGTAACCG+GGG | - | chr6.1:52841080-52841099 | MS.gene97904:CDS | 25.0% |
| ! | GTTATCAGATCTTATAACAA+AGG | - | chr6.1:52840158-52840177 | MS.gene97904:intron | 25.0% |
| ! | TACATGAAAAATACAACATC+AGG | + | chr6.1:52839830-52839849 | None:intergenic | 25.0% |
| ! | TTAAACTAATTGACCCAAAA+TGG | + | chr6.1:52839524-52839543 | None:intergenic | 25.0% |
| ! | TTGATTCATGACTTAAAACT+AGG | - | chr6.1:52839111-52839130 | MS.gene97904:intron | 25.0% |
| ! | TTGTATACCATTGTTTATAC+TGG | - | chr6.1:52838597-52838616 | MS.gene97904:intron | 25.0% |
| ! | TTTCTTTACCTTAATGACAT+CGG | + | chr6.1:52839697-52839716 | None:intergenic | 25.0% |
| !! | ATACGATCCAAATTTAAGAT+TGG | - | chr6.1:52839614-52839633 | MS.gene97904:CDS | 25.0% |
| !! | CAAATTTAAGATTGGCATTA+TGG | - | chr6.1:52839622-52839641 | MS.gene97904:CDS | 25.0% |
| !! | CTTATCATAAAGTGTTTATG+TGG | + | chr6.1:52840662-52840681 | None:intergenic | 25.0% |
| !! | TTAAGATTGAAAGGTATGAT+CGG | + | chr6.1:52840120-52840139 | None:intergenic | 25.0% |
| !! | TTGTATTTTGCAAATGTATG+TGG | - | chr6.1:52841885-52841904 | MS.gene97904:intron | 25.0% |
| !! | TTTAGGATTGAAATCGTATA+CGG | - | chr6.1:52838524-52838543 | MS.gene97904:CDS | 25.0% |
| !!! | GATGATAACATTGATTTTTC+AGG | - | chr6.1:52839488-52839507 | MS.gene97904:intron | 25.0% |
| !!! | TTTTTTCTAGTGAGCTTAAT+CGG | - | chr6.1:52839757-52839776 | MS.gene97904:intron | 25.0% |
| !!! | TTTTTTTTTTTGTGGTTGCT+GGG | + | chr6.1:52840968-52840987 | None:intergenic | 25.0% |
| AAATTATCATTCGCTGTTCA+GGG | - | chr6.1:52841461-52841480 | MS.gene97904:intron | 30.0% | |
| AACAAACCTGAAAAATACTC+GGG | + | chr6.1:52840863-52840882 | None:intergenic | 30.0% | |
| AAGATCTGATAACTCATAGT+AGG | + | chr6.1:52840151-52840170 | None:intergenic | 30.0% | |
| AATTTGGCACCACAATTATT+AGG | + | chr6.1:52840730-52840749 | None:intergenic | 30.0% | |
| ACGATTTCAATCCTAAATGT+TGG | + | chr6.1:52838521-52838540 | None:intergenic | 30.0% | |
| AGATGAATTTGGTTACATGT+TGG | - | chr6.1:52839216-52839235 | MS.gene97904:intron | 30.0% | |
| AGCAGAAAATTATTGTAACC+GGG | + | chr6.1:52841121-52841140 | None:intergenic | 30.0% | |
| ATGACTTAAAACTAGGTCTT+TGG | - | chr6.1:52839118-52839137 | MS.gene97904:intron | 30.0% | |
| ATTTGTCGTTGTGATGTATA+AGG | - | chr6.1:52841743-52841762 | MS.gene97904:CDS | 30.0% | |
| CATGTATATACAGATAAGTG+AGG | - | chr6.1:52839844-52839863 | MS.gene97904:intron | 30.0% | |
| GAATGGCATAATGAGTATAT+GGG | - | chr6.1:52839665-52839684 | MS.gene97904:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr6.1:52840928-52840947 | MS.gene97904:intron | 30.0% | |
| GCTTTAACCAGTATAAACAA+TGG | + | chr6.1:52838607-52838626 | None:intergenic | 30.0% | |
| GGGTTTAAAAATTTAAACCC+CGG | + | chr6.1:52841100-52841119 | None:intergenic | 30.0% | |
| GTAAAAAATTATCGTAACCG+GGG | - | chr6.1:52841183-52841202 | MS.gene97904:CDS | 30.0% | |
| TAAATTATCATTCGCTGTTC+AGG | - | chr6.1:52841460-52841479 | MS.gene97904:intron | 30.0% | |
| TCTTAGAAAAGAAGACCATA+AGG | - | chr6.1:52838656-52838675 | MS.gene97904:intron | 30.0% | |
| TGATAGAGATCTCTTAAAGA+AGG | - | chr6.1:52839399-52839418 | MS.gene97904:intron | 30.0% | |
| TTATACATCACAACGACAAA+TGG | + | chr6.1:52841744-52841763 | None:intergenic | 30.0% | |
| TTTGTCGTTGTGATGTATAA+GGG | - | chr6.1:52841744-52841763 | MS.gene97904:CDS | 30.0% | |
| ! | AGGCTACAATTTTCCATTTT+GGG | - | chr6.1:52839508-52839527 | MS.gene97904:intron | 30.0% |
| ! | GGGTTTAAATTTTTAAACCC+CGG | - | chr6.1:52841100-52841119 | MS.gene97904:CDS | 30.0% |
| ! | TATTCATGGTTTTTAAACCC+CGG | + | chr6.1:52841203-52841222 | None:intergenic | 30.0% |
| !! | GAGATTACATTTTTGACTGA+AGG | - | chr6.1:52839869-52839888 | MS.gene97904:intron | 30.0% |
| !! | GCTATTTTCATAAGCTATCT+TGG | + | chr6.1:52840583-52840602 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTTTTGTGGTTGC+TGG | + | chr6.1:52840969-52840988 | None:intergenic | 30.0% |
| AATTCCTTCACTTCCTACAA+TGG | - | chr6.1:52841935-52841954 | MS.gene97904:CDS | 35.0% | |
| AATTGTTACTGAAGGGTCTA+AGG | - | chr6.1:52839955-52839974 | MS.gene97904:intron | 35.0% | |
| ACCTCTTTCTGTAACTGTTA+TGG | + | chr6.1:52841913-52841932 | None:intergenic | 35.0% | |
| AGATATACCAACAGCAACAT+TGG | + | chr6.1:52838799-52838818 | None:intergenic | 35.0% | |
| ATGAAGATTGCCAAAAGTTC+TGG | - | chr6.1:52839579-52839598 | MS.gene97904:CDS | 35.0% | |
| ATTGTTACTGAAGGGTCTAA+GGG | - | chr6.1:52839956-52839975 | MS.gene97904:intron | 35.0% | |
| CAAACATGGCCTAATAATTG+TGG | - | chr6.1:52840718-52840737 | MS.gene97904:intron | 35.0% | |
| CACAATTATTAGGCCATGTT+TGG | + | chr6.1:52840720-52840739 | None:intergenic | 35.0% | |
| CAGGTATCTACAACCTTATA+AGG | + | chr6.1:52840253-52840272 | None:intergenic | 35.0% | |
| CGAGGACAGTAAAATATTCA+TGG | + | chr6.1:52841217-52841236 | None:intergenic | 35.0% | |
| CGTACGAAAAAGTCCTTATA+AGG | - | chr6.1:52840237-52840256 | MS.gene97904:intron | 35.0% | |
| GAAATTCCTGCACAGAAATT+TGG | + | chr6.1:52840746-52840765 | None:intergenic | 35.0% | |
| GACTGACACTTAAGATTGAA+AGG | + | chr6.1:52840129-52840148 | None:intergenic | 35.0% | |
| GATCTTCTTACTGATCTCTT+TGG | - | chr6.1:52841278-52841297 | MS.gene97904:intron | 35.0% | |
| GCAGAAAATTATTGTAACCG+GGG | + | chr6.1:52841120-52841139 | None:intergenic | 35.0% | |
| GCATACATTCATGTACAAGT+GGG | + | chr6.1:52841660-52841679 | None:intergenic | 35.0% | |
| GCTGAAGGAAATAGAGATAA+AGG | - | chr6.1:52841400-52841419 | MS.gene97904:intron | 35.0% | |
| GCTGTTGGTATATCTAGATT+GGG | - | chr6.1:52838804-52838823 | MS.gene97904:intron | 35.0% | |
| GGAATGGCATAATGAGTATA+TGG | - | chr6.1:52839664-52839683 | MS.gene97904:intron | 35.0% | |
| GGGTTGTAGATATTACACAA+AGG | - | chr6.1:52839976-52839995 | MS.gene97904:intron | 35.0% | |
| GTATATACAGATAAGTGAGG+AGG | - | chr6.1:52839847-52839866 | MS.gene97904:intron | 35.0% | |
| GTTTCAGGGAAAGTTAAATG+AGG | - | chr6.1:52840272-52840291 | MS.gene97904:intron | 35.0% | |
| TAACCTATGAAACACTGACA+CGG | + | chr6.1:52838559-52838578 | None:intergenic | 35.0% | |
| TGAGCAAATACAGAGAGATA+AGG | + | chr6.1:52841010-52841029 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | - | chr6.1:52840933-52840952 | MS.gene97904:intron | 35.0% | |
| TGCATACATTCATGTACAAG+TGG | + | chr6.1:52841661-52841680 | None:intergenic | 35.0% | |
| TGCTGTTGGTATATCTAGAT+TGG | - | chr6.1:52838803-52838822 | MS.gene97904:intron | 35.0% | |
| TTAAGCTGTCTATCCAAACA+TGG | - | chr6.1:52840704-52840723 | MS.gene97904:intron | 35.0% | |
| ! | CAGGCTACAATTTTCCATTT+TGG | - | chr6.1:52839507-52839526 | MS.gene97904:intron | 35.0% |
| ! | CATTTAACTTTCCCTGAAAC+AGG | + | chr6.1:52840272-52840291 | None:intergenic | 35.0% |
| ! | TTCTCTTTTTCTTTTCGACG+AGG | + | chr6.1:52841235-52841254 | None:intergenic | 35.0% |
| !! | AATGTAATGGACATGTGTCA+GGG | - | chr6.1:52840066-52840085 | MS.gene97904:intron | 35.0% |
| !! | TTCATCTGCTTTTATAGGCA+AGG | - | chr6.1:52838830-52838849 | MS.gene97904:intron | 35.0% |
| AGGTTGTAGATACCTGTTTC+AGG | - | chr6.1:52840257-52840276 | MS.gene97904:intron | 40.0% | |
| ATACCGTGTCAGTGTTTCAT+AGG | - | chr6.1:52838553-52838572 | MS.gene97904:CDS | 40.0% | |
| ATAGACTTTGTGCCAACTGT+GGG | - | chr6.1:52838717-52838736 | MS.gene97904:intron | 40.0% | |
| ATTTCTGTGCAGGAATTTCG+AGG | - | chr6.1:52840747-52840766 | MS.gene97904:CDS | 40.0% | |
| CAGAACAATGTCGATACTTC+TGG | - | chr6.1:52839253-52839272 | MS.gene97904:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr6.1:52840935-52840954 | MS.gene97904:intron | 40.0% | |
| CCATAAGGAAACAAGTTCAC+TGG | - | chr6.1:52838671-52838690 | MS.gene97904:intron | 40.0% | |
| GAAATGTGGTTCAAGACCTA+TGG | - | chr6.1:52839450-52839469 | MS.gene97904:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr6.1:52840934-52840953 | MS.gene97904:intron | 40.0% | |
| GCCATAACAGTTACAGAAAG+AGG | - | chr6.1:52841909-52841928 | MS.gene97904:CDS | 40.0% | |
| GCTAAGCCAAACAACATCTT+AGG | + | chr6.1:52840186-52840205 | None:intergenic | 40.0% | |
| GGTTGTAGATACCTGTTTCA+GGG | - | chr6.1:52840258-52840277 | MS.gene97904:intron | 40.0% | |
| GTCTATCAACATTTCCCCAA+AGG | + | chr6.1:52838703-52838722 | None:intergenic | 40.0% | |
| GTTAAACCTGTTGACACAAC+CGG | - | chr6.1:52840789-52840808 | MS.gene97904:CDS | 40.0% | |
| GTTGGTATATCTAGATTGGG+AGG | - | chr6.1:52838807-52838826 | MS.gene97904:intron | 40.0% | |
| TGCAAAACAGCTTCCATTGT+AGG | + | chr6.1:52841951-52841970 | None:intergenic | 40.0% | |
| TTAAACGCACATATGGGACA+AGG | + | chr6.1:52840394-52840413 | None:intergenic | 40.0% | |
| TTCATAGTGTCGTCAGTAAG+AGG | + | chr6.1:52838449-52838468 | None:intergenic | 40.0% | |
| TTTGTCACACTTAGATCCGA+CGG | - | chr6.1:52839313-52839332 | MS.gene97904:intron | 40.0% | |
| ! | AAGGTGCCTAAGATGTTGTT+TGG | - | chr6.1:52840177-52840196 | MS.gene97904:intron | 40.0% |
| ! | ACGAGTAAATGCGTGTCATT+TGG | - | chr6.1:52841517-52841536 | MS.gene97904:intron | 40.0% |
| ! | AGTTCACTGGTTGTTTCCTT+TGG | - | chr6.1:52838684-52838703 | MS.gene97904:intron | 40.0% |
| ! | CCAGTGAACTTGTTTCCTTA+TGG | + | chr6.1:52838674-52838693 | None:intergenic | 40.0% |
| ! | GAGAATGCAACCAGAACTTT+TGG | + | chr6.1:52839592-52839611 | None:intergenic | 40.0% |
| ! | GTTCACTGGTTGTTTCCTTT+GGG | - | chr6.1:52838685-52838704 | MS.gene97904:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr6.1:52839205-52839224 | MS.gene97904:intron | 40.0% |
| ! | TGAAGAAGCATATCAGCACT+TGG | + | chr6.1:52839367-52839386 | None:intergenic | 40.0% |
| ! | TTCACTGGTTGTTTCCTTTG+GGG | - | chr6.1:52838686-52838705 | MS.gene97904:intron | 40.0% |
| ! | TTCTGACCCGAGTATTTTTC+AGG | - | chr6.1:52840854-52840873 | MS.gene97904:CDS | 40.0% |
| !! | GAATGTAATGGACATGTGTC+AGG | - | chr6.1:52840065-52840084 | MS.gene97904:intron | 40.0% |
| !! | GGAGGTTCATCTGCTTTTAT+AGG | - | chr6.1:52838825-52838844 | MS.gene97904:intron | 40.0% |
| !!! | AGCGTGAGTTCTTGTTTTTC+CGG | - | chr6.1:52839338-52839357 | MS.gene97904:intron | 40.0% |
| AACAAATGCATCACCAGCAC+CGG | + | chr6.1:52840811-52840830 | None:intergenic | 45.0% | |
| AGCTAATGCAGTCCTTGCAT+TGG | + | chr6.1:52839293-52839312 | None:intergenic | 45.0% | |
| ATACCAACAGCAACATTGGC+AGG | + | chr6.1:52838795-52838814 | None:intergenic | 45.0% | |
| ATGTCGATACTTCTGGCATG+AGG | - | chr6.1:52839260-52839279 | MS.gene97904:intron | 45.0% | |
| CAAGCAACGTCTTCAACACA+AGG | + | chr6.1:52841308-52841327 | None:intergenic | 45.0% | |
| CCAGGAGATTTCTTGAAAGC+CGG | + | chr6.1:52838765-52838784 | None:intergenic | 45.0% | |
| GATAGACTTTGTGCCAACTG+TGG | - | chr6.1:52838716-52838735 | MS.gene97904:intron | 45.0% | |
| GCATATCAGCACTTGGATTC+CGG | + | chr6.1:52839360-52839379 | None:intergenic | 45.0% | |
| GCTTCCATTGTAGGAAGTGA+AGG | + | chr6.1:52841942-52841961 | None:intergenic | 45.0% | |
| GCTTTCAAGAAATCTCCTGG+TGG | - | chr6.1:52838765-52838784 | MS.gene97904:intron | 45.0% | |
| GGATCAAGCCGATGTCATTA+AGG | - | chr6.1:52839686-52839705 | MS.gene97904:intron | 45.0% | |
| TACCAACTGAGCTAAGCTCA+CGG | + | chr6.1:52840906-52840925 | None:intergenic | 45.0% | |
| TACTAGCGACGCCAACATTT+AGG | - | chr6.1:52838507-52838526 | MS.gene97904:CDS | 45.0% | |
| TGAGGTTTGATGCCAATGCA+AGG | - | chr6.1:52839278-52839297 | MS.gene97904:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr6.1:52840813-52840832 | MS.gene97904:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr6.1:52840906-52840925 | MS.gene97904:CDS | 45.0% |
| !! | GCAATGTGTGCTGATTTGCA+TGG | + | chr6.1:52839555-52839574 | None:intergenic | 45.0% |
| !!! | AAAAAAAATAATATTTTTAC+TGG | - | chr6.1:52841359-52841378 | MS.gene97904:intron | 5.0% |
| !!! | TTATATTATATATATTTTCT+TGG | - | chr6.1:52841835-52841854 | MS.gene97904:intron | 5.0% |
| ACCAACTGAGCTAAGCTCAC+GGG | + | chr6.1:52840905-52840924 | None:intergenic | 50.0% | |
| CCGGCTTTCAAGAAATCTCC+TGG | - | chr6.1:52838762-52838781 | MS.gene97904:intron | 50.0% | |
| CTGGGATGAACTCTTGCTGA+AGG | - | chr6.1:52841385-52841404 | MS.gene97904:intron | 50.0% | |
| TATGCCATTCCAAGCAGCCT+CGG | + | chr6.1:52839655-52839674 | None:intergenic | 50.0% | |
| TGTGCAGGAATTTCGAGGCA+GGG | - | chr6.1:52840752-52840771 | MS.gene97904:CDS | 50.0% | |
| TTTCTTGAAAGCCGGTGCCT+CGG | + | chr6.1:52838757-52838776 | None:intergenic | 50.0% | |
| ! | GTGGTGCCAAATTTCTGTGC+AGG | - | chr6.1:52840737-52840756 | MS.gene97904:CDS | 50.0% |
| CAAGAACTCACGCTCACCGT+CGG | + | chr6.1:52839332-52839351 | None:intergenic | 55.0% | |
| CAGGAATTTCGAGGCAGGGT+TGG | - | chr6.1:52840756-52840775 | MS.gene97904:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | + | chr6.1:52840904-52840923 | None:intergenic | 55.0% | |
| CTGTGCAGGAATTTCGAGGC+AGG | - | chr6.1:52840751-52840770 | MS.gene97904:CDS | 55.0% | |
| GAATTTCGAGGCAGGGTTGG+AGG | - | chr6.1:52840759-52840778 | MS.gene97904:CDS | 55.0% | |
| GACTTTGTGCCAACTGTGGG+AGG | - | chr6.1:52838720-52838739 | MS.gene97904:intron | 55.0% | |
| GCTCCTGCCAATGTTGCTGT+TGG | - | chr6.1:52838789-52838808 | MS.gene97904:intron | 55.0% | |
| ACATTGGCAGGAGCTCCACC+AGG | + | chr6.1:52838783-52838802 | None:intergenic | 60.0% | |
| AGCGACACTCCTCCCACAGT+TGG | + | chr6.1:52838732-52838751 | None:intergenic | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+TGG | - | chr6.1:52840901-52840920 | MS.gene97904:CDS | 60.0% | |
| CCTGTTGACACAACCGGTGC+TGG | - | chr6.1:52840795-52840814 | MS.gene97904:CDS | 60.0% | |
| GGTTGCTGGGATTCGAACCC+CGG | + | chr6.1:52840955-52840974 | None:intergenic | 60.0% | |
| GTGCAGTGTCCGACACGACA+CGG | + | chr6.1:52840098-52840117 | None:intergenic | 60.0% | |
| TCTGCCGAGGCTGCTTGGAA+TGG | - | chr6.1:52839648-52839667 | MS.gene97904:CDS | 60.0% | |
| TTCCAAGCAGCCTCGGCAGA+CGG | + | chr6.1:52839648-52839667 | None:intergenic | 60.0% | |
| !! | CCAGCACCGGTTGTGTCAAC+AGG | + | chr6.1:52840798-52840817 | None:intergenic | 60.0% |
| GGCATTATGGCCGTCTGCCG+AGG | - | chr6.1:52839635-52839654 | MS.gene97904:CDS | 65.0% | |
| GGGTCAGTGCCGTGTCGTGT+CGG | - | chr6.1:52840086-52840105 | MS.gene97904:intron | 65.0% | |
| ! | AGTGTCGCTCGCCGAGGCAC+CGG | - | chr6.1:52838743-52838762 | MS.gene97904:intron | 70.0% |
| GGCCGTCTGCCGAGGCTGCT+TGG | - | chr6.1:52839643-52839662 | MS.gene97904:CDS | 75.0% | |
| !! | GGGAGGAGTGTCGCTCGCCG+AGG | - | chr6.1:52838737-52838756 | MS.gene97904:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 52838443 | 52841998 | 52838443 | ID=MS.gene97904 |
| chr6.1 | mRNA | 52838443 | 52841998 | 52838443 | ID=MS.gene97904.t1;Parent=MS.gene97904 |
| chr6.1 | exon | 52841896 | 52841998 | 52841896 | ID=MS.gene97904.t1.exon1;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52841896 | 52841998 | 52841896 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| chr6.1 | exon | 52841590 | 52841798 | 52841590 | ID=MS.gene97904.t1.exon2;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52841590 | 52841798 | 52841590 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| chr6.1 | exon | 52841021 | 52841233 | 52841021 | ID=MS.gene97904.t1.exon3;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52841021 | 52841233 | 52841021 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| chr6.1 | exon | 52840734 | 52840931 | 52840734 | ID=MS.gene97904.t1.exon4;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52840734 | 52840931 | 52840734 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| chr6.1 | exon | 52840444 | 52840584 | 52840444 | ID=MS.gene97904.t1.exon5;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52840444 | 52840584 | 52840444 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| chr6.1 | exon | 52839566 | 52839682 | 52839566 | ID=MS.gene97904.t1.exon6;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52839566 | 52839682 | 52839566 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| chr6.1 | exon | 52838443 | 52838580 | 52838443 | ID=MS.gene97904.t1.exon7;Parent=MS.gene97904.t1 |
| chr6.1 | CDS | 52838443 | 52838580 | 52838443 | ID=cds.MS.gene97904.t1;Parent=MS.gene97904.t1 |
| Gene Sequence |
| Protein sequence |
