Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98136.t1 | XP_013454490.1 | 97.2 | 425 | 12 | 0 | 1 | 425 | 1 | 425 | 4.40E-235 | 823.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98136.t1 | A0A072UGG4 | 97.2 | 425 | 12 | 0 | 1 | 425 | 1 | 425 | 3.1e-235 | 823.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049697 | MS.gene98136 | 0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene049989 | MS.gene98136 | 0.80302 | 4.26E-49 | -1.69E-46 |
| MS.gene050476 | MS.gene98136 | 0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene050544 | MS.gene98136 | 0.804816 | 1.80E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene98136 | 0.82411 | 9.64E-54 | -1.69E-46 |
| MS.gene051816 | MS.gene98136 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene055957 | MS.gene98136 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene98136 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene98136 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene98136 | 0.803552 | 3.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98136.t1 | MTR_4g005350 | 97.412 | 425 | 11 | 0 | 1 | 425 | 1 | 425 | 0.0 | 851 |
| MS.gene98136.t1 | MTR_8g104270 | 39.571 | 326 | 163 | 13 | 115 | 424 | 254 | 561 | 2.85e-47 | 171 |
| MS.gene98136.t1 | MTR_6g084440 | 40.379 | 317 | 166 | 10 | 115 | 424 | 300 | 600 | 1.41e-46 | 169 |
| MS.gene98136.t1 | MTR_6g084440 | 40.439 | 319 | 165 | 11 | 115 | 424 | 300 | 602 | 7.19e-46 | 167 |
| MS.gene98136.t1 | MTR_7g010160 | 34.557 | 327 | 186 | 12 | 122 | 424 | 422 | 744 | 2.23e-39 | 150 |
| MS.gene98136.t1 | MTR_5g040600 | 30.861 | 337 | 177 | 12 | 121 | 425 | 597 | 909 | 1.96e-29 | 121 |
| MS.gene98136.t1 | MTR_8g467380 | 28.391 | 317 | 198 | 8 | 121 | 410 | 511 | 825 | 3.43e-20 | 93.6 |
| MS.gene98136.t1 | MTR_8g467390 | 42.045 | 88 | 43 | 2 | 194 | 277 | 206 | 289 | 1.57e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98136.t1 | AT3G20260 | 59.729 | 442 | 156 | 10 | 1 | 425 | 1 | 437 | 3.30e-156 | 449 |
| MS.gene98136.t1 | AT1G73850 | 36.446 | 332 | 179 | 10 | 115 | 424 | 312 | 633 | 2.32e-46 | 169 |
| MS.gene98136.t1 | AT1G73850 | 36.446 | 332 | 179 | 10 | 115 | 424 | 312 | 633 | 2.32e-46 | 169 |
| MS.gene98136.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 1.56e-37 | 144 |
| MS.gene98136.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 1.56e-37 | 144 |
| MS.gene98136.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 1.56e-37 | 144 |
| MS.gene98136.t1 | AT5G39785 | 29.762 | 336 | 197 | 6 | 125 | 425 | 276 | 607 | 7.85e-36 | 139 |
| MS.gene98136.t1 | AT5G39785 | 29.412 | 357 | 195 | 8 | 125 | 425 | 276 | 631 | 3.82e-34 | 135 |
| MS.gene98136.t1 | AT1G69610 | 28.148 | 405 | 218 | 11 | 60 | 425 | 222 | 592 | 1.35e-30 | 124 |
| MS.gene98136.t1 | AT1G69610 | 28.109 | 402 | 222 | 11 | 60 | 425 | 267 | 637 | 1.62e-30 | 124 |
| MS.gene98136.t1 | AT1G69610 | 28.109 | 402 | 222 | 11 | 60 | 425 | 266 | 636 | 1.79e-30 | 124 |
| MS.gene98136.t1 | AT3G01175 | 27.536 | 345 | 182 | 11 | 119 | 424 | 260 | 575 | 1.61e-19 | 91.3 |
Find 100 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAACTTCTTCATGCTTT+TGG | 0.162837 | 4.1:-89228129 | None:intergenic |
| GAAAATTCACCTCGTATATT+TGG | 0.166047 | 4.1:-89227136 | None:intergenic |
| CTAGAGCGAGCATAAATTTC+AGG | 0.248869 | 4.1:-89227085 | None:intergenic |
| GTGCAGCATCTTAGTGAAAT+TGG | 0.249862 | 4.1:+89226204 | MS.gene98136:CDS |
| CAAAGCCTCGCCACCATTGC+TGG | 0.272542 | 4.1:-89226128 | None:intergenic |
| GCAGGAGTTTCAACAATTTC+AGG | 0.274624 | 4.1:+89227012 | MS.gene98136:CDS |
| AACTTGATTTATCGAATAAT+AGG | 0.282412 | 4.1:+89228251 | MS.gene98136:CDS |
| CACTTTGCCTAAACTACTTC+AGG | 0.289828 | 4.1:+89227111 | MS.gene98136:CDS |
| TTCTTGCTCCAGATCTTATC+AGG | 0.311925 | 4.1:+89227356 | MS.gene98136:CDS |
| TGACTAGAGAACAGCTGTTT+TGG | 0.334597 | 4.1:+89228209 | MS.gene98136:CDS |
| TCGAGACATGAATCTTCTTC+AGG | 0.336685 | 4.1:-89226036 | None:intergenic |
| AGCTTCTTTGATGTAGATCT+TGG | 0.341971 | 4.1:-89226770 | None:intergenic |
| TCCACATCCCTCCATTCATT+TGG | 0.357529 | 4.1:-89226096 | None:intergenic |
| GGCTTTGATTCCTCAGGCTC+AGG | 0.371626 | 4.1:-89225874 | None:intergenic |
| TCAATTATCCTGATAAGATC+TGG | 0.392578 | 4.1:-89227364 | None:intergenic |
| TCAAGCGTTATCAACCTGTT+TGG | 0.398641 | 4.1:+89227436 | MS.gene98136:CDS |
| GCTGATTCTGATTTCCAAAC+AGG | 0.399869 | 4.1:-89227450 | None:intergenic |
| GAGCCTCCTCTTTACCTCAT+TGG | 0.400140 | 4.1:-89225977 | None:intergenic |
| GCTTGAAAATATTCCCTACT+TGG | 0.408160 | 4.1:+89226865 | MS.gene98136:CDS |
| GAAGAGGAAGAGGGAGAGAC+AGG | 0.409837 | 4.1:+89226072 | MS.gene98136:CDS |
| TTTGGAACCTGAAGTAGTTT+AGG | 0.411769 | 4.1:-89227118 | None:intergenic |
| CCTTTCGTTTATTCCTGAAA+AGG | 0.417058 | 4.1:+89227401 | MS.gene98136:CDS |
| AGGGGAGGATGAAGAGGAAG+AGG | 0.437173 | 4.1:+89226062 | MS.gene98136:CDS |
| GGTCGAGGGCCCTGCTCAAA+AGG | 0.439174 | 4.1:-89227064 | None:intergenic |
| TTGACGCGAAAATCTTATCA+AGG | 0.439867 | 4.1:+89228167 | MS.gene98136:CDS |
| CTGCGCACTACGGCTGTAAC+AGG | 0.442848 | 4.1:-89226993 | None:intergenic |
| CTTTCGTTTATTCCTGAAAA+GGG | 0.442892 | 4.1:+89227402 | MS.gene98136:CDS |
| GTGTTGGGCTTTGATTCCTC+AGG | 0.443162 | 4.1:-89225880 | None:intergenic |
| ATATGAGTTATAAGATATCT+TGG | 0.448492 | 4.1:+89226954 | MS.gene98136:CDS |
| CATCTTAGTGAAATTGGAAA+AGG | 0.480151 | 4.1:+89226210 | MS.gene98136:CDS |
| TCCCTACTTGGATATTGAAA+CGG | 0.481023 | 4.1:+89226877 | MS.gene98136:CDS |
| AGGAGCTAAGGAAGAAGGGT+TGG | 0.486945 | 4.1:+89228089 | MS.gene98136:CDS |
| GCTCGCCACTCCTCTACAAC+AGG | 0.491100 | 4.1:+89227471 | MS.gene98136:CDS |
| GGGGAGGATGAAGAGGAAGA+GGG | 0.491674 | 4.1:+89226063 | MS.gene98136:CDS |
| GATTAGCAAGGGAATAGAAT+GGG | 0.491816 | 4.1:-89228292 | None:intergenic |
| GAAGAAGTTCAACTATTGCT+TGG | 0.493712 | 4.1:+89228139 | MS.gene98136:CDS |
| AGAAGCTGGCATCTCCCCTT+CGG | 0.493948 | 4.1:+89226786 | MS.gene98136:CDS |
| TTATTACCAATGAGGTAAAG+AGG | 0.499834 | 4.1:+89225971 | MS.gene98136:CDS |
| CGAGCATAAATTTCAGGTCG+AGG | 0.501283 | 4.1:-89227079 | None:intergenic |
| AGATGTTCAGTCTCATCATC+AGG | 0.502631 | 4.1:-89226836 | None:intergenic |
| TGATCAGGACCACCAGTGTT+GGG | 0.502702 | 4.1:-89225895 | None:intergenic |
| GAGAGACAGGACCAAATGAA+TGG | 0.508991 | 4.1:+89226085 | MS.gene98136:CDS |
| TTTGATGTAGATCTTGGAGA+TGG | 0.515789 | 4.1:-89226764 | None:intergenic |
| CTGAAATTTATGCTCGCTCT+AGG | 0.518886 | 4.1:+89227086 | MS.gene98136:CDS |
| TCAGGAATAAACGAAAGGTA+AGG | 0.521078 | 4.1:-89227396 | None:intergenic |
| TAGGTCAAATATGCTTGACT+TGG | 0.527289 | 4.1:+89226906 | MS.gene98136:CDS |
| ACTGAAGGAGCTAAGGAAGA+AGG | 0.531349 | 4.1:+89228084 | MS.gene98136:CDS |
| GAAGATTCATGTCTCGAGGA+AGG | 0.531829 | 4.1:+89226042 | MS.gene98136:CDS |
| TATCGAATAATAGGTTAGAG+AGG | 0.533149 | 4.1:+89228260 | MS.gene98136:CDS |
| AGGCAGAAGGCCAGCAATGG+TGG | 0.534428 | 4.1:+89226118 | MS.gene98136:CDS |
| CGAGGAAGGGGAGGATGAAG+AGG | 0.537283 | 4.1:+89226056 | MS.gene98136:CDS |
| TGATTAGCAAGGGAATAGAA+TGG | 0.538025 | 4.1:-89228293 | None:intergenic |
| AGATTCATGTCTCGAGGAAG+GGG | 0.539571 | 4.1:+89226044 | MS.gene98136:CDS |
| CTAAAGACTGTGATTAGCAA+GGG | 0.541390 | 4.1:-89228303 | None:intergenic |
| AAGATCTACATCAAAGAAGC+TGG | 0.541693 | 4.1:+89226772 | MS.gene98136:CDS |
| TTTAGGAAATCTCAGAAAGC+AGG | 0.542506 | 4.1:+89225820 | MS.gene98136:CDS |
| GACAGGACCAAATGAATGGA+GGG | 0.543843 | 4.1:+89226089 | MS.gene98136:CDS |
| GATATTGAAACGGCATATGT+AGG | 0.544289 | 4.1:+89226887 | MS.gene98136:CDS |
| CTGATCAGGACCACCAGTGT+TGG | 0.545402 | 4.1:-89225896 | None:intergenic |
| AAAGAATGTTATTCTTTGAT+CGG | 0.546997 | 4.1:+89226175 | MS.gene98136:CDS |
| AAGATTCATGTCTCGAGGAA+GGG | 0.547261 | 4.1:+89226043 | MS.gene98136:CDS |
| TGCCGTTTCAATATCCAAGT+AGG | 0.551085 | 4.1:-89226879 | None:intergenic |
| GTAGACTGAACCTGTTGTAG+AGG | 0.552512 | 4.1:-89227481 | None:intergenic |
| TGACGCGAAAATCTTATCAA+GGG | 0.554727 | 4.1:+89228168 | MS.gene98136:CDS |
| CAAGGGTTCTAAGAATGACT+AGG | 0.556783 | 4.1:+89228185 | MS.gene98136:CDS |
| AATTTCAGGTTCTATTGCAA+AGG | 0.557900 | 4.1:+89227026 | MS.gene98136:CDS |
| ACCAAATGAATGGAGGGATG+TGG | 0.560503 | 4.1:+89226095 | MS.gene98136:CDS |
| GCCGTTTCAATATCCAAGTA+GGG | 0.561156 | 4.1:-89226878 | None:intergenic |
| CTGTTACAGCCGTAGTGCGC+AGG | 0.568099 | 4.1:+89226994 | MS.gene98136:CDS |
| TTTCAAGGAAAGACACCGAA+GGG | 0.568486 | 4.1:-89226801 | None:intergenic |
| TGGAGGGATGTGGAGGCAGA+AGG | 0.569588 | 4.1:+89226105 | MS.gene98136:CDS |
| ATCGAATAATAGGTTAGAGA+GGG | 0.574093 | 4.1:+89228261 | MS.gene98136:CDS |
| TGGTGAAACTGAAGGAGCTA+AGG | 0.574266 | 4.1:+89228077 | MS.gene98136:CDS |
| ACTAAAGACTGTGATTAGCA+AGG | 0.583558 | 4.1:-89228304 | None:intergenic |
| CTGAAGGAGCTAAGGAAGAA+GGG | 0.591588 | 4.1:+89228085 | MS.gene98136:CDS |
| TCAAATATGCTTGACTTGGG+AGG | 0.593392 | 4.1:+89226910 | MS.gene98136:CDS |
| GAAGGCCAGCAATGGTGGCG+AGG | 0.595275 | 4.1:+89226123 | MS.gene98136:CDS |
| GAAATCTCAGAAAGCAGGTG+TGG | 0.595844 | 4.1:+89225825 | MS.gene98136:CDS |
| GTTGAAACTCCTGCGCACTA+CGG | 0.598745 | 4.1:-89227003 | None:intergenic |
| CAAGGGAATAGAATGGGGCA+TGG | 0.602619 | 4.1:-89228286 | None:intergenic |
| CGATTCTTGTGCTGATGCTG+AGG | 0.602958 | 4.1:+89225936 | MS.gene98136:CDS |
| CAAGGCAGTGCCTGAGCCTG+AGG | 0.607834 | 4.1:+89225864 | MS.gene98136:CDS |
| TGAGGTAAAGAGGAGGCTCA+AGG | 0.611185 | 4.1:+89225981 | MS.gene98136:CDS |
| TGGAGGCAGAAGGCCAGCAA+TGG | 0.611341 | 4.1:+89226115 | MS.gene98136:CDS |
| GAGGAATCAAAGCCCAACAC+TGG | 0.613144 | 4.1:+89225883 | MS.gene98136:CDS |
| AGGTCAAATATGCTTGACTT+GGG | 0.614670 | 4.1:+89226907 | MS.gene98136:CDS |
| GAGCATAAATTTCAGGTCGA+GGG | 0.615669 | 4.1:-89227078 | None:intergenic |
| AAATGAATGGAGGGATGTGG+AGG | 0.617932 | 4.1:+89226098 | MS.gene98136:CDS |
| AGACAGGACCAAATGAATGG+AGG | 0.620870 | 4.1:+89226088 | MS.gene98136:CDS |
| TTCATGTCTCGAGGAAGGGG+AGG | 0.621507 | 4.1:+89226047 | MS.gene98136:CDS |
| GGTTCAGTCTACTCTTGAGA+AGG | 0.623341 | 4.1:+89227492 | MS.gene98136:CDS |
| CTGAACCTGTTGTAGAGGAG+TGG | 0.623679 | 4.1:-89227476 | None:intergenic |
| GAATCAAAGCCCAACACTGG+TGG | 0.626423 | 4.1:+89225886 | MS.gene98136:CDS |
| TGAAGAAGATTCATGTCTCG+AGG | 0.629329 | 4.1:+89226038 | MS.gene98136:CDS |
| GCAGAAAGTGGTGAAACTGA+AGG | 0.636231 | 4.1:+89228069 | MS.gene98136:intron |
| GCACTACGGCTGTAACAGGT+AGG | 0.666438 | 4.1:-89226989 | None:intergenic |
| ATTAGCAAGGGAATAGAATG+GGG | 0.668816 | 4.1:-89228291 | None:intergenic |
| TTCAAGGAAAGACACCGAAG+GGG | 0.675812 | 4.1:-89226800 | None:intergenic |
| CTTCAGGTTCCAAATATACG+AGG | 0.690819 | 4.1:+89227127 | MS.gene98136:CDS |
| TTACCAATGAGGTAAAGAGG+AGG | 0.699801 | 4.1:+89225974 | MS.gene98136:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTATAAAAGAAATAT+TGG | + | chr4.1:89227211-89227230 | MS.gene98136:intron | 10.0% |
| !!! | TTTTGAAGATTAAAAAATTT+AGG | + | chr4.1:89225803-89225822 | MS.gene98136:CDS | 10.0% |
| !! | ATAATATAAAATTCCAAAGT+TGG | - | chr4.1:89227544-89227563 | None:intergenic | 15.0% |
| !! | TCAATTTATTAATAACTTTG+AGG | + | chr4.1:89226461-89226480 | MS.gene98136:intron | 15.0% |
| !! | TTTATCAAATGTGTTATATT+TGG | + | chr4.1:89226595-89226614 | MS.gene98136:intron | 15.0% |
| !! | AAAATCAAACTCTAATTGAT+AGG | - | chr4.1:89226347-89226366 | None:intergenic | 20.0% |
| !! | AAAGAATGTTATTCTTTGAT+CGG | + | chr4.1:89226175-89226194 | MS.gene98136:CDS | 20.0% |
| !! | AACAATAGAAAAGTAAATTC+TGG | - | chr4.1:89227946-89227965 | None:intergenic | 20.0% |
| !! | AACTTGATTTATCGAATAAT+AGG | + | chr4.1:89228251-89228270 | MS.gene98136:CDS | 20.0% |
| !! | AATTAAAATCAGGATTATGT+TGG | - | chr4.1:89226517-89226536 | None:intergenic | 20.0% |
| !! | ACACTTAAAAGATCTAAATA+TGG | - | chr4.1:89226316-89226335 | None:intergenic | 20.0% |
| !! | ACTTAAAAGATCTAAATATG+GGG | - | chr4.1:89226314-89226333 | None:intergenic | 20.0% |
| !! | AGCAAATATATGTTAACTAT+TGG | + | chr4.1:89227748-89227767 | MS.gene98136:intron | 20.0% |
| !! | ATATGAGTTATAAGATATCT+TGG | + | chr4.1:89226954-89226973 | MS.gene98136:CDS | 20.0% |
| !! | ATTATGAGATTTGATAAATG+TGG | - | chr4.1:89226701-89226720 | None:intergenic | 20.0% |
| !! | CACTTAAAAGATCTAAATAT+GGG | - | chr4.1:89226315-89226334 | None:intergenic | 20.0% |
| !! | CATAAAACTTTAGATCATAT+GGG | - | chr4.1:89227895-89227914 | None:intergenic | 20.0% |
| !! | TAATAAATTGAAATGAATCC+AGG | - | chr4.1:89226452-89226471 | None:intergenic | 20.0% |
| !! | TTATGAGATTTGATAAATGT+GGG | - | chr4.1:89226700-89226719 | None:intergenic | 20.0% |
| !!! | AACATAATCCTGATTTTAAT+TGG | + | chr4.1:89226516-89226535 | MS.gene98136:intron | 20.0% |
| !!! | CTTTTATACTAAATAACTTC+AGG | - | chr4.1:89227205-89227224 | None:intergenic | 20.0% |
| !!! | TGCTATATGATTAACTTTTA+AGG | + | chr4.1:89227658-89227677 | MS.gene98136:intron | 20.0% |
| !!! | TTATTAATAACTTTGAGGAT+AGG | + | chr4.1:89226466-89226485 | MS.gene98136:intron | 20.0% |
| ! | AAATTATCTAAACCCATATG+TGG | + | chr4.1:89227162-89227181 | MS.gene98136:intron | 25.0% |
| ! | ACTGACATTATATTCAGATT+AGG | - | chr4.1:89226576-89226595 | None:intergenic | 25.0% |
| ! | CATATTAAAGAAGAACCATT+TGG | - | chr4.1:89227690-89227709 | None:intergenic | 25.0% |
| ! | CTTTCCTTGAAAAAATTTGA+AGG | + | chr4.1:89226812-89226831 | MS.gene98136:CDS | 25.0% |
| ! | GCATAAAACTTTAGATCATA+TGG | - | chr4.1:89227896-89227915 | None:intergenic | 25.0% |
| ! | TAAGTGTTTAAGCTAATGAA+TGG | + | chr4.1:89227288-89227307 | MS.gene98136:intron | 25.0% |
| ! | TCTATTGTTAAAGATGAAGT+TGG | + | chr4.1:89227957-89227976 | MS.gene98136:intron | 25.0% |
| ! | TTTCATTTAAATGCAGAAAG+TGG | + | chr4.1:89228057-89228076 | MS.gene98136:intron | 25.0% |
| !! | ATTGAGAAGAAACAGTTTTA+TGG | + | chr4.1:89226005-89226024 | MS.gene98136:CDS | 25.0% |
| !! | TAACTATTGGTTATACTTTG+AGG | + | chr4.1:89227761-89227780 | MS.gene98136:intron | 25.0% |
| !!! | CTGATTTTAATTGGAGTTAA+GGG | + | chr4.1:89226525-89226544 | MS.gene98136:intron | 25.0% |
| !!! | TGTTTTGACGAAATAGAATT+AGG | + | chr4.1:89227845-89227864 | MS.gene98136:intron | 25.0% |
| ATCGAATAATAGGTTAGAGA+GGG | + | chr4.1:89228261-89228280 | MS.gene98136:CDS | 30.0% | |
| CATCTTAGTGAAATTGGAAA+AGG | + | chr4.1:89226210-89226229 | MS.gene98136:CDS | 30.0% | |
| CCTTAACTCCAATTAAAATC+AGG | - | chr4.1:89226527-89226546 | None:intergenic | 30.0% | |
| CTTTAATATGCTTGTTCCAA+TGG | + | chr4.1:89227700-89227719 | MS.gene98136:intron | 30.0% | |
| CTTTCGTTTATTCCTGAAAA+GGG | + | chr4.1:89227402-89227421 | MS.gene98136:CDS | 30.0% | |
| GAAAATTCACCTCGTATATT+TGG | - | chr4.1:89227139-89227158 | None:intergenic | 30.0% | |
| TATCGAATAATAGGTTAGAG+AGG | + | chr4.1:89228260-89228279 | MS.gene98136:CDS | 30.0% | |
| TCAATTATCCTGATAAGATC+TGG | - | chr4.1:89227367-89227386 | None:intergenic | 30.0% | |
| TTATTACCAATGAGGTAAAG+AGG | + | chr4.1:89225971-89225990 | MS.gene98136:CDS | 30.0% | |
| ! | ATAAGATTTTCGCGTCAATA+AGG | - | chr4.1:89228165-89228184 | None:intergenic | 30.0% |
| ! | CGATGATTTTATTACCAATG+AGG | + | chr4.1:89225963-89225982 | MS.gene98136:CDS | 30.0% |
| ! | TAGTACATTTTGTTAGCAAC+AGG | - | chr4.1:89226661-89226680 | None:intergenic | 30.0% |
| ! | TTAAGCTAATGAATGGATTC+AGG | + | chr4.1:89227295-89227314 | MS.gene98136:intron | 30.0% |
| ! | TTGAACTTCTTCATGCTTTT+GGG | - | chr4.1:89228131-89228150 | None:intergenic | 30.0% |
| !! | AATTTCAGGTTCTATTGCAA+AGG | + | chr4.1:89227026-89227045 | MS.gene98136:CDS | 30.0% |
| !! | ACAACAGAATTTGCTAAAGA+TGG | - | chr4.1:89227923-89227942 | None:intergenic | 30.0% |
| !!! | AGGTCCTTCAAATTTTTTCA+AGG | - | chr4.1:89226819-89226838 | None:intergenic | 30.0% |
| !!! | CCTGATTTTAATTGGAGTTA+AGG | + | chr4.1:89226524-89226543 | MS.gene98136:intron | 30.0% |
| !!! | CTTTTAAGGTTTGATCCAAA+TGG | + | chr4.1:89227672-89227691 | MS.gene98136:intron | 30.0% |
| !!! | TGCTTCTTTTTTAGGTGAAA+CGG | + | chr4.1:89226249-89226268 | MS.gene98136:intron | 30.0% |
| !!! | TTAGCTCTTGCTTCTTTTTT+AGG | + | chr4.1:89226241-89226260 | MS.gene98136:intron | 30.0% |
| AAGATCTACATCAAAGAAGC+TGG | + | chr4.1:89226772-89226791 | MS.gene98136:CDS | 35.0% | |
| AATAACTTCAGGAACATCCA+TGG | - | chr4.1:89227194-89227213 | None:intergenic | 35.0% | |
| AATCAGGATTATGTTGGTGT+TGG | - | chr4.1:89226511-89226530 | None:intergenic | 35.0% | |
| AATTCCAAAGTTGGATCACA+AGG | - | chr4.1:89227535-89227554 | None:intergenic | 35.0% | |
| AGCTTCTTTGATGTAGATCT+TGG | - | chr4.1:89226773-89226792 | None:intergenic | 35.0% | |
| AGGGTTGGAGAAAAAATTCT+TGG | + | chr4.1:89228104-89228123 | MS.gene98136:CDS | 35.0% | |
| AGGTCAAATATGCTTGACTT+GGG | + | chr4.1:89226907-89226926 | MS.gene98136:CDS | 35.0% | |
| ATAACTTCAGGAACATCCAT+GGG | - | chr4.1:89227193-89227212 | None:intergenic | 35.0% | |
| CCAATGGTTAAATGCTAATC+AGG | + | chr4.1:89227716-89227735 | MS.gene98136:intron | 35.0% | |
| CCTGATTAGCATTTAACCAT+TGG | - | chr4.1:89227719-89227738 | None:intergenic | 35.0% | |
| CCTTTCGTTTATTCCTGAAA+AGG | + | chr4.1:89227401-89227420 | MS.gene98136:CDS | 35.0% | |
| GAAGAAGTTCAACTATTGCT+TGG | + | chr4.1:89228139-89228158 | MS.gene98136:CDS | 35.0% | |
| GAGTTGCATGATGCTTAAAT+GGG | + | chr4.1:89226399-89226418 | MS.gene98136:intron | 35.0% | |
| GATATTGAAACGGCATATGT+AGG | + | chr4.1:89226887-89226906 | MS.gene98136:CDS | 35.0% | |
| GATTAGGCATGTTCAAAATG+TGG | - | chr4.1:89226560-89226579 | None:intergenic | 35.0% | |
| GCTTGAAAATATTCCCTACT+TGG | + | chr4.1:89226865-89226884 | MS.gene98136:CDS | 35.0% | |
| TAGGTCAAATATGCTTGACT+TGG | + | chr4.1:89226906-89226925 | MS.gene98136:CDS | 35.0% | |
| TCAGGAATAAACGAAAGGTA+AGG | - | chr4.1:89227399-89227418 | None:intergenic | 35.0% | |
| TCCCTACTTGGATATTGAAA+CGG | + | chr4.1:89226877-89226896 | MS.gene98136:CDS | 35.0% | |
| TGAAACATATTCTCTGTGTC+AGG | + | chr4.1:89226722-89226741 | MS.gene98136:intron | 35.0% | |
| TGACGCGAAAATCTTATCAA+GGG | + | chr4.1:89228168-89228187 | MS.gene98136:CDS | 35.0% | |
| TGAGTTGCATGATGCTTAAA+TGG | + | chr4.1:89226398-89226417 | MS.gene98136:intron | 35.0% | |
| TGATTTAGTGCTTGTCTTCA+TGG | + | chr4.1:89227998-89228017 | MS.gene98136:intron | 35.0% | |
| TTGACGCGAAAATCTTATCA+AGG | + | chr4.1:89228167-89228186 | MS.gene98136:CDS | 35.0% | |
| TTTACCTTGTGATCCAACTT+TGG | + | chr4.1:89227528-89227547 | MS.gene98136:intron | 35.0% | |
| TTTAGGAAATCTCAGAAAGC+AGG | + | chr4.1:89225820-89225839 | MS.gene98136:CDS | 35.0% | |
| TTTGATGTAGATCTTGGAGA+TGG | - | chr4.1:89226767-89226786 | None:intergenic | 35.0% | |
| ! | ATCAGGATTATGTTGGTGTT+GGG | - | chr4.1:89226510-89226529 | None:intergenic | 35.0% |
| ! | GAAAATGAACCTTTTGAGCA+GGG | + | chr4.1:89227055-89227074 | MS.gene98136:CDS | 35.0% |
| ! | GGAAAAAGATTTGGTAGACA+AGG | + | chr4.1:89225846-89225865 | MS.gene98136:CDS | 35.0% |
| ! | GTTGAACTTCTTCATGCTTT+TGG | - | chr4.1:89228132-89228151 | None:intergenic | 35.0% |
| ! | TGAAAATGAACCTTTTGAGC+AGG | + | chr4.1:89227054-89227073 | MS.gene98136:CDS | 35.0% |
| ! | TGAACTTCTTCATGCTTTTG+GGG | - | chr4.1:89228130-89228149 | None:intergenic | 35.0% |
| ! | TTTGGAACCTGAAGTAGTTT+AGG | - | chr4.1:89227121-89227140 | None:intergenic | 35.0% |
| ! | TTTTCTGACTTACACTGATC+AGG | - | chr4.1:89225913-89225932 | None:intergenic | 35.0% |
| !! | ACTTTTTCTTGTCCCTTTTC+AGG | - | chr4.1:89227417-89227436 | None:intergenic | 35.0% |
| !! | CCTTTTCAGGAATAAACGAA+AGG | - | chr4.1:89227404-89227423 | None:intergenic | 35.0% |
| !!! | GCTTCTTTTTTAGGTGAAAC+GGG | + | chr4.1:89226250-89226269 | MS.gene98136:intron | 35.0% |
| AAGATTCATGTCTCGAGGAA+GGG | + | chr4.1:89226043-89226062 | MS.gene98136:CDS | 40.0% | |
| AGATGTTCAGTCTCATCATC+AGG | - | chr4.1:89226839-89226858 | None:intergenic | 40.0% | |
| AGCAGGTGTGGAAAAAGATT+TGG | + | chr4.1:89225837-89225856 | MS.gene98136:CDS | 40.0% | |
| CACTTTGCCTAAACTACTTC+AGG | + | chr4.1:89227111-89227130 | MS.gene98136:CDS | 40.0% | |
| CTAGAGCGAGCATAAATTTC+AGG | - | chr4.1:89227088-89227107 | None:intergenic | 40.0% | |
| CTGAAATTTATGCTCGCTCT+AGG | + | chr4.1:89227086-89227105 | MS.gene98136:CDS | 40.0% | |
| CTTTAGATCATATGGGCAGT+AGG | - | chr4.1:89227888-89227907 | None:intergenic | 40.0% | |
| GAGATTTGATAAATGTGGGC+AGG | - | chr4.1:89226696-89226715 | None:intergenic | 40.0% | |
| GCAGGAGTTTCAACAATTTC+AGG | + | chr4.1:89227012-89227031 | MS.gene98136:CDS | 40.0% | |
| GCCGTTTCAATATCCAAGTA+GGG | - | chr4.1:89226881-89226900 | None:intergenic | 40.0% | |
| GTGCAGCATCTTAGTGAAAT+TGG | + | chr4.1:89226204-89226223 | MS.gene98136:CDS | 40.0% | |
| TAACTTCAGGAACATCCATG+GGG | - | chr4.1:89227192-89227211 | None:intergenic | 40.0% | |
| TCAAGCGTTATCAACCTGTT+TGG | + | chr4.1:89227436-89227455 | MS.gene98136:CDS | 40.0% | |
| TCGAGACATGAATCTTCTTC+AGG | - | chr4.1:89226039-89226058 | None:intergenic | 40.0% | |
| TGAAGAAGATTCATGTCTCG+AGG | + | chr4.1:89226038-89226057 | MS.gene98136:CDS | 40.0% | |
| TTACCAATGAGGTAAAGAGG+AGG | + | chr4.1:89225974-89225993 | MS.gene98136:CDS | 40.0% | |
| TTCTTGCTCCAGATCTTATC+AGG | + | chr4.1:89227356-89227375 | MS.gene98136:CDS | 40.0% | |
| TTTCAAGGAAAGACACCGAA+GGG | - | chr4.1:89226804-89226823 | None:intergenic | 40.0% | |
| ! | CTTCAGGTTCCAAATATACG+AGG | + | chr4.1:89227127-89227146 | MS.gene98136:CDS | 40.0% |
| ! | GAGCATAAATTTCAGGTCGA+GGG | - | chr4.1:89227081-89227100 | None:intergenic | 40.0% |
| ! | GCTGATTCTGATTTCCAAAC+AGG | - | chr4.1:89227453-89227472 | None:intergenic | 40.0% |
| ! | TGACTAGAGAACAGCTGTTT+TGG | + | chr4.1:89228209-89228228 | MS.gene98136:CDS | 40.0% |
| ! | TGCCGTTTCAATATCCAAGT+AGG | - | chr4.1:89226882-89226901 | None:intergenic | 40.0% |
| !! | CAAGGGTTCTAAGAATGACT+AGG | + | chr4.1:89228185-89228204 | MS.gene98136:CDS | 40.0% |
| !! | TCAAATATGCTTGACTTGGG+AGG | + | chr4.1:89226910-89226929 | MS.gene98136:CDS | 40.0% |
| !! | TCTGCTTTTAATCCAAGTGC+AGG | + | chr4.1:89227798-89227817 | MS.gene98136:intron | 40.0% |
| !! | TTTTCAAGGAAAGACACCGA+AGG | - | chr4.1:89226805-89226824 | None:intergenic | 40.0% |
| !!! | CTTTTTTAGGTGAAACGGGA+GGG | + | chr4.1:89226254-89226273 | MS.gene98136:intron | 40.0% |
| !!! | TCTTTTTTAGGTGAAACGGG+AGG | + | chr4.1:89226253-89226272 | MS.gene98136:intron | 40.0% |
| AAATGAATGGAGGGATGTGG+AGG | + | chr4.1:89226098-89226117 | MS.gene98136:CDS | 45.0% | |
| ACCAAATGAATGGAGGGATG+TGG | + | chr4.1:89226095-89226114 | MS.gene98136:CDS | 45.0% | |
| ACTGAAGGAGCTAAGGAAGA+AGG | + | chr4.1:89228084-89228103 | MS.gene98136:CDS | 45.0% | |
| AGACAGGACCAAATGAATGG+AGG | + | chr4.1:89226088-89226107 | MS.gene98136:CDS | 45.0% | |
| AGATTCATGTCTCGAGGAAG+GGG | + | chr4.1:89226044-89226063 | MS.gene98136:CDS | 45.0% | |
| CAAGTGCAGGACAGCTTATT+GGG | + | chr4.1:89227811-89227830 | MS.gene98136:intron | 45.0% | |
| CATCATGCAACTCATGTAGC+AGG | - | chr4.1:89226392-89226411 | None:intergenic | 45.0% | |
| CTGAAGGAGCTAAGGAAGAA+GGG | + | chr4.1:89228085-89228104 | MS.gene98136:CDS | 45.0% | |
| GAAATCTCAGAAAGCAGGTG+TGG | + | chr4.1:89225825-89225844 | MS.gene98136:CDS | 45.0% | |
| GAAGATTCATGTCTCGAGGA+AGG | + | chr4.1:89226042-89226061 | MS.gene98136:CDS | 45.0% | |
| GACAGGACCAAATGAATGGA+GGG | + | chr4.1:89226089-89226108 | MS.gene98136:CDS | 45.0% | |
| GAGAGACAGGACCAAATGAA+TGG | + | chr4.1:89226085-89226104 | MS.gene98136:CDS | 45.0% | |
| GCAGAAAGTGGTGAAACTGA+AGG | + | chr4.1:89228069-89228088 | MS.gene98136:intron | 45.0% | |
| GGTTCAGTCTACTCTTGAGA+AGG | + | chr4.1:89227492-89227511 | MS.gene98136:CDS | 45.0% | |
| GTAGACTGAACCTGTTGTAG+AGG | - | chr4.1:89227484-89227503 | None:intergenic | 45.0% | |
| TCCACATCCCTCCATTCATT+TGG | - | chr4.1:89226099-89226118 | None:intergenic | 45.0% | |
| TGGTGAAACTGAAGGAGCTA+AGG | + | chr4.1:89228077-89228096 | MS.gene98136:CDS | 45.0% | |
| TTCAAGGAAAGACACCGAAG+GGG | - | chr4.1:89226803-89226822 | None:intergenic | 45.0% | |
| ! | CGAGCATAAATTTCAGGTCG+AGG | - | chr4.1:89227082-89227101 | None:intergenic | 45.0% |
| ! | TTTGAAACTTGGATGCTGCC+TGG | + | chr4.1:89226431-89226450 | MS.gene98136:intron | 45.0% |
| AGGAGCTAAGGAAGAAGGGT+TGG | + | chr4.1:89228089-89228108 | MS.gene98136:CDS | 50.0% | |
| CAAGGGAATAGAATGGGGCA+TGG | - | chr4.1:89228289-89228308 | None:intergenic | 50.0% | |
| CATGATGCTTAAATGGGCGC+TGG | + | chr4.1:89226405-89226424 | MS.gene98136:intron | 50.0% | |
| CCAAGTGCAGGACAGCTTAT+TGG | + | chr4.1:89227810-89227829 | MS.gene98136:intron | 50.0% | |
| CCAATAAGCTGTCCTGCACT+TGG | - | chr4.1:89227813-89227832 | None:intergenic | 50.0% | |
| CTGAACCTGTTGTAGAGGAG+TGG | - | chr4.1:89227479-89227498 | None:intergenic | 50.0% | |
| GAATCAAAGCCCAACACTGG+TGG | + | chr4.1:89225886-89225905 | MS.gene98136:CDS | 50.0% | |
| GAGCCTCCTCTTTACCTCAT+TGG | - | chr4.1:89225980-89225999 | None:intergenic | 50.0% | |
| GAGGAATCAAAGCCCAACAC+TGG | + | chr4.1:89225883-89225902 | MS.gene98136:CDS | 50.0% | |
| GTTGAAACTCCTGCGCACTA+CGG | - | chr4.1:89227006-89227025 | None:intergenic | 50.0% | |
| TGAGGTAAAGAGGAGGCTCA+AGG | + | chr4.1:89225981-89226000 | MS.gene98136:CDS | 50.0% | |
| TGATCAGGACCACCAGTGTT+GGG | - | chr4.1:89225898-89225917 | None:intergenic | 50.0% | |
| TGCAGGACAGCTTATTGGGA+GGG | + | chr4.1:89227815-89227834 | MS.gene98136:intron | 50.0% | |
| ! | CGATTCTTGTGCTGATGCTG+AGG | + | chr4.1:89225936-89225955 | MS.gene98136:CDS | 50.0% |
| ! | GTGTTGGGCTTTGATTCCTC+AGG | - | chr4.1:89225883-89225902 | None:intergenic | 50.0% |
| !!! | GGCGCTGGCATTTTGAAACT+TGG | + | chr4.1:89226420-89226439 | MS.gene98136:intron | 50.0% |
| AGAAGCTGGCATCTCCCCTT+CGG | + | chr4.1:89226786-89226805 | MS.gene98136:CDS | 55.0% | |
| AGGGGAGGATGAAGAGGAAG+AGG | + | chr4.1:89226062-89226081 | MS.gene98136:CDS | 55.0% | |
| CAGGACAGCTTATTGGGAGG+GGG | + | chr4.1:89227817-89227836 | MS.gene98136:intron | 55.0% | |
| CTGATCAGGACCACCAGTGT+TGG | - | chr4.1:89225899-89225918 | None:intergenic | 55.0% | |
| GAAGAGGAAGAGGGAGAGAC+AGG | + | chr4.1:89226072-89226091 | MS.gene98136:CDS | 55.0% | |
| GCACTACGGCTGTAACAGGT+AGG | - | chr4.1:89226992-89227011 | None:intergenic | 55.0% | |
| GCAGGACAGCTTATTGGGAG+GGG | + | chr4.1:89227816-89227835 | MS.gene98136:intron | 55.0% | |
| GGGGAGGATGAAGAGGAAGA+GGG | + | chr4.1:89226063-89226082 | MS.gene98136:CDS | 55.0% | |
| GTGCAGGACAGCTTATTGGG+AGG | + | chr4.1:89227814-89227833 | MS.gene98136:intron | 55.0% | |
| TTCAGGAACATCCATGGGGC+AGG | - | chr4.1:89227188-89227207 | None:intergenic | 55.0% | |
| TTCATGTCTCGAGGAAGGGG+AGG | + | chr4.1:89226047-89226066 | MS.gene98136:CDS | 55.0% | |
| ! | GGCTTTGATTCCTCAGGCTC+AGG | - | chr4.1:89225877-89225896 | None:intergenic | 55.0% |
| AGGCAGAAGGCCAGCAATGG+TGG | + | chr4.1:89226118-89226137 | MS.gene98136:CDS | 60.0% | |
| CAAAGCCTCGCCACCATTGC+TGG | - | chr4.1:89226131-89226150 | None:intergenic | 60.0% | |
| CCATGGGGCAGGCCACATAT+GGG | - | chr4.1:89227177-89227196 | None:intergenic | 60.0% | |
| CGAGGAAGGGGAGGATGAAG+AGG | + | chr4.1:89226056-89226075 | MS.gene98136:CDS | 60.0% | |
| CTGCGCACTACGGCTGTAAC+AGG | - | chr4.1:89226996-89227015 | None:intergenic | 60.0% | |
| CTGTTACAGCCGTAGTGCGC+AGG | + | chr4.1:89226994-89227013 | MS.gene98136:CDS | 60.0% | |
| GCTCGCCACTCCTCTACAAC+AGG | + | chr4.1:89227471-89227490 | MS.gene98136:CDS | 60.0% | |
| TCCATGGGGCAGGCCACATA+TGG | - | chr4.1:89227178-89227197 | None:intergenic | 60.0% | |
| TGGAGGCAGAAGGCCAGCAA+TGG | + | chr4.1:89226115-89226134 | MS.gene98136:CDS | 60.0% | |
| TGGAGGGATGTGGAGGCAGA+AGG | + | chr4.1:89226105-89226124 | MS.gene98136:CDS | 60.0% | |
| CAAGGCAGTGCCTGAGCCTG+AGG | + | chr4.1:89225864-89225883 | MS.gene98136:CDS | 65.0% | |
| CCCATATGTGGCCTGCCCCA+TGG | + | chr4.1:89227174-89227193 | MS.gene98136:intron | 65.0% | |
| GGTCGAGGGCCCTGCTCAAA+AGG | - | chr4.1:89227067-89227086 | None:intergenic | 65.0% | |
| ! | GAAGGCCAGCAATGGTGGCG+AGG | + | chr4.1:89226123-89226142 | MS.gene98136:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 89225796 | 89228312 | 89225796 | ID=MS.gene98136 |
| chr4.1 | mRNA | 89225796 | 89228312 | 89225796 | ID=MS.gene98136.t1;Parent=MS.gene98136 |
| chr4.1 | exon | 89225796 | 89226231 | 89225796 | ID=MS.gene98136.t1.exon1;Parent=MS.gene98136.t1 |
| chr4.1 | CDS | 89225796 | 89226231 | 89225796 | ID=cds.MS.gene98136.t1;Parent=MS.gene98136.t1 |
| chr4.1 | exon | 89226744 | 89227148 | 89226744 | ID=MS.gene98136.t1.exon2;Parent=MS.gene98136.t1 |
| chr4.1 | CDS | 89226744 | 89227148 | 89226744 | ID=cds.MS.gene98136.t1;Parent=MS.gene98136.t1 |
| chr4.1 | exon | 89227317 | 89227513 | 89227317 | ID=MS.gene98136.t1.exon3;Parent=MS.gene98136.t1 |
| chr4.1 | CDS | 89227317 | 89227513 | 89227317 | ID=cds.MS.gene98136.t1;Parent=MS.gene98136.t1 |
| chr4.1 | exon | 89228073 | 89228312 | 89228073 | ID=MS.gene98136.t1.exon4;Parent=MS.gene98136.t1 |
| chr4.1 | CDS | 89228073 | 89228312 | 89228073 | ID=cds.MS.gene98136.t1;Parent=MS.gene98136.t1 |
| Gene Sequence |
| Protein sequence |
