Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050544.t1 | KEH24570.1 | 91.7 | 218 | 17 | 1 | 17 | 233 | 1 | 218 | 2.00E-24 | 122.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050544.t1 | Q8L8A5 | 74.3 | 74 | 19 | 0 | 17 | 90 | 11 | 84 | 1.8e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050544.t1 | A0A072UFK2 | 91.7 | 218 | 17 | 1 | 17 | 233 | 1 | 218 | 1.5e-24 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050476 | MS.gene050544 | 0.992102 | 2.58E-191 | -1.69E-46 |
| MS.gene050544 | MS.gene05640 | 0.806435 | 8.24E-50 | -1.69E-46 |
| MS.gene050544 | MS.gene06093 | 0.812188 | 4.81E-51 | -1.69E-46 |
| MS.gene050544 | MS.gene20224 | 0.828398 | 9.19E-55 | -1.69E-46 |
| MS.gene050544 | MS.gene34313 | 0.809766 | 1.61E-50 | -1.69E-46 |
| MS.gene050544 | MS.gene34315 | 0.807308 | 5.38E-50 | -1.69E-46 |
| MS.gene050544 | MS.gene37415 | 0.820976 | 5.16E-53 | -1.69E-46 |
| MS.gene050544 | MS.gene54373 | 0.839637 | 1.41E-57 | -1.69E-46 |
| MS.gene050544 | MS.gene75642 | 0.803335 | 3.66E-49 | -1.69E-46 |
| MS.gene050544 | MS.gene79921 | 0.806868 | 6.68E-50 | -1.69E-46 |
| MS.gene050544 | MS.gene91174 | 0.810621 | 1.05E-50 | -1.69E-46 |
| MS.gene050544 | MS.gene98136 | 0.804816 | 1.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050544.t1 | MTR_7g115410 | 95.413 | 218 | 9 | 1 | 17 | 233 | 1 | 218 | 3.12e-96 | 280 |
| MS.gene050544.t1 | MTR_1g080590 | 57.273 | 220 | 72 | 8 | 17 | 233 | 11 | 211 | 5.34e-48 | 157 |
| MS.gene050544.t1 | MTR_1g080590 | 54.167 | 168 | 55 | 8 | 69 | 233 | 1 | 149 | 8.60e-20 | 82.8 |
| MS.gene050544.t1 | MTR_8g024650 | 50.000 | 84 | 41 | 1 | 15 | 97 | 8 | 91 | 1.63e-18 | 81.3 |
| MS.gene050544.t1 | MTR_3g097190 | 61.111 | 54 | 21 | 0 | 44 | 97 | 69 | 122 | 4.19e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050544.t1 | AT5G28640 | 51.570 | 223 | 79 | 5 | 17 | 233 | 11 | 210 | 8.97e-40 | 136 |
| MS.gene050544.t1 | AT4G00850 | 58.824 | 68 | 27 | 1 | 17 | 83 | 11 | 78 | 3.36e-19 | 83.2 |
| MS.gene050544.t1 | AT4G00850 | 51.807 | 83 | 36 | 1 | 33 | 111 | 28 | 110 | 5.65e-19 | 82.4 |
| MS.gene050544.t1 | AT1G01160 | 56.452 | 62 | 27 | 0 | 17 | 78 | 13 | 74 | 1.96e-15 | 72.4 |
| MS.gene050544.t1 | AT1G01160 | 73.333 | 45 | 12 | 0 | 34 | 78 | 64 | 108 | 7.20e-15 | 71.6 |
| MS.gene050544.t1 | AT5G28640 | 45.029 | 171 | 65 | 5 | 69 | 233 | 1 | 148 | 1.72e-12 | 63.5 |
| MS.gene050544.t1 | AT5G28640 | 45.029 | 171 | 65 | 5 | 69 | 233 | 1 | 148 | 1.72e-12 | 63.5 |
Find 76 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTTGCACAGAAGTCTTA+TGG | 0.269289 | 7.4:-2289245 | MS.gene050544:CDS |
| CTTGGAGGCGGTGGAACTTC+AGG | 0.325122 | 7.4:-2289379 | MS.gene050544:CDS |
| GGTTGTGTAAAATAAGTAAA+AGG | 0.347586 | 7.4:+2290281 | None:intergenic |
| TCAACATTGGGTTCTGGTGG+TGG | 0.361229 | 7.4:-2289298 | MS.gene050544:CDS |
| GATTGTAGAGAGTCAGAATT+CGG | 0.378404 | 7.4:-2290224 | MS.gene050544:CDS |
| TTCTGGTGGTGGAGTGATGC+AGG | 0.385903 | 7.4:-2289542 | MS.gene050544:CDS |
| GCTGTTGCTGCGCGAATAGA+AGG | 0.398335 | 7.4:+2289437 | None:intergenic |
| ATGGTGTAGCAGTACCCTTC+TGG | 0.398459 | 7.4:-2289559 | MS.gene050544:intron |
| TACCTCAAATCTTCTGATGA+TGG | 0.413883 | 7.4:-2289136 | MS.gene050544:CDS |
| CAACATTGGGTTCTGGTGGT+GGG | 0.423263 | 7.4:-2289297 | MS.gene050544:CDS |
| GATGCAGGGTCAGCAGCAGC+AGG | 0.427997 | 7.4:-2289527 | MS.gene050544:CDS |
| CCTCCACCGCGGATGAAGTC+AGG | 0.431259 | 7.4:+2289271 | None:intergenic |
| AGTGGCAAGCAACAAGAGAT+TGG | 0.434502 | 7.4:-2289217 | MS.gene050544:CDS |
| GGTTTGCACAGAAGTCTTAT+GGG | 0.434506 | 7.4:-2289244 | MS.gene050544:CDS |
| CATCAGAAGATTTGAGGTAA+AGG | 0.438000 | 7.4:+2289140 | None:intergenic |
| GGTCGAGGCGGTGGTGGTGA+AGG | 0.439472 | 7.4:-2289172 | MS.gene050544:CDS |
| TCCCATCATCAGAAGATTTG+AGG | 0.441249 | 7.4:+2289134 | None:intergenic |
| CCGGCCATGGTTGGTGGTTG+AGG | 0.446740 | 7.4:+2289680 | None:intergenic |
| TAGCAGTACCCTTCTGGTGG+TGG | 0.451363 | 7.4:-2289553 | MS.gene050544:intron |
| AAATATGCAAACGAATTAAC+CGG | 0.453740 | 7.4:+2290332 | None:intergenic |
| AGTAGCTCAACATTGGGTTC+TGG | 0.464044 | 7.4:-2289304 | MS.gene050544:CDS |
| TCCCACGTTCATATTGCTAC+AGG | 0.468413 | 7.4:+2289333 | None:intergenic |
| ACCACCAACCATGGCCGGTC+AGG | 0.472281 | 7.4:-2289675 | MS.gene050544:intron |
| GACACAACAACAACAGCTAA+TGG | 0.478063 | 7.4:-2289473 | MS.gene050544:CDS |
| GCACTTCAACAGCATCAACT+TGG | 0.489725 | 7.4:-2289397 | MS.gene050544:CDS |
| TTCATCCGCGGTGGAGGAGA+GGG | 0.494151 | 7.4:-2289265 | MS.gene050544:CDS |
| ACTTGTTCTCATCCAAGTAC+TGG | 0.496057 | 7.4:+2290260 | None:intergenic |
| TGCTGTTGAAGTGCTGAGTA+AGG | 0.496707 | 7.4:+2289406 | None:intergenic |
| ACCTCAAATCTTCTGATGAT+GGG | 0.498318 | 7.4:-2289135 | MS.gene050544:CDS |
| CCTGACTTCATCCGCGGTGG+AGG | 0.498540 | 7.4:-2289271 | MS.gene050544:CDS |
| TCGGATCAAGGTCGAGGCGG+TGG | 0.500503 | 7.4:-2289181 | MS.gene050544:CDS |
| ATTGTAGAGAGTCAGAATTC+GGG | 0.501834 | 7.4:-2290223 | MS.gene050544:CDS |
| TGTTTCTACCTGACCGGCCA+TGG | 0.501985 | 7.4:+2289667 | None:intergenic |
| ACCTGACCGGCCATGGTTGG+TGG | 0.503390 | 7.4:+2289674 | None:intergenic |
| GTGGCAAGCAACAAGAGATT+GGG | 0.506357 | 7.4:-2289216 | MS.gene050544:CDS |
| CAGCATCAACTTGGAGGCGG+TGG | 0.509178 | 7.4:-2289388 | MS.gene050544:CDS |
| AGAAGTCTTATGGGAGGTAG+TGG | 0.518354 | 7.4:-2289235 | MS.gene050544:CDS |
| GATCAAGGTCGAGGCGGTGG+TGG | 0.520726 | 7.4:-2289178 | MS.gene050544:CDS |
| GATTGGGATGAGTTCTTCAT+CGG | 0.525078 | 7.4:-2289200 | MS.gene050544:CDS |
| AGCTCAACATTGGGTTCTGG+TGG | 0.534520 | 7.4:-2289301 | MS.gene050544:CDS |
| ATGAGTTCTTCATCGGATCA+AGG | 0.547272 | 7.4:-2289193 | MS.gene050544:CDS |
| CTTCATCCGCGGTGGAGGAG+AGG | 0.548468 | 7.4:-2289266 | MS.gene050544:CDS |
| AGGAGGTAGTAGCTCAACAT+TGG | 0.549524 | 7.4:-2289311 | MS.gene050544:CDS |
| CGAGGCGGTGGTGGTGAAGG+CGG | 0.550384 | 7.4:-2289169 | MS.gene050544:CDS |
| GGAGGTAGTAGCTCAACATT+GGG | 0.550428 | 7.4:-2289310 | MS.gene050544:CDS |
| AGCAATATGAACGTGGGAGG+AGG | 0.551007 | 7.4:-2289328 | MS.gene050544:CDS |
| CCTCAACCACCAACCATGGC+CGG | 0.554155 | 7.4:-2289680 | MS.gene050544:CDS |
| CTTCAACAGCATCAACTTGG+AGG | 0.554957 | 7.4:-2289394 | MS.gene050544:CDS |
| TCTACCTGACCGGCCATGGT+TGG | 0.555887 | 7.4:+2289671 | None:intergenic |
| TTTGTCACTATCCCTTCCAC+CGG | 0.567981 | 7.4:-2290351 | MS.gene050544:CDS |
| CAAACGAATTAACCGGTGGA+AGG | 0.571275 | 7.4:+2290339 | None:intergenic |
| TGCGTGTGTTTCTACCTGAC+CGG | 0.576751 | 7.4:+2289661 | None:intergenic |
| TGCATCACTCCACCACCAGA+AGG | 0.580900 | 7.4:+2289544 | None:intergenic |
| TCTGGTGGTGGAGTGATGCA+GGG | 0.593405 | 7.4:-2289541 | MS.gene050544:CDS |
| TCTTCATCGGATCAAGGTCG+AGG | 0.593840 | 7.4:-2289187 | MS.gene050544:CDS |
| GAGAATCAGCTATTGCAGCT+AGG | 0.595794 | 7.4:+2289705 | None:intergenic |
| AAACGAATTAACCGGTGGAA+GGG | 0.600361 | 7.4:+2290340 | None:intergenic |
| TTTCCTGACTTCATCCGCGG+TGG | 0.603311 | 7.4:-2289274 | MS.gene050544:CDS |
| AACATATCAGGAATCAAGCA+AGG | 0.610316 | 7.4:-2289748 | MS.gene050544:intron |
| GGGTTTCCTGACTTCATCCG+CGG | 0.614235 | 7.4:-2289277 | MS.gene050544:CDS |
| GCCTGTAGCAATATGAACGT+GGG | 0.617388 | 7.4:-2289334 | MS.gene050544:CDS |
| GGGAGGAGCACACTACATGC+AGG | 0.618698 | 7.4:-2289506 | MS.gene050544:CDS |
| TCAACCTCAACCACCAACCA+TGG | 0.620168 | 7.4:-2289684 | MS.gene050544:CDS |
| ATGCAGGGTCAGCAGCAGCA+GGG | 0.624777 | 7.4:-2289526 | MS.gene050544:CDS |
| CTGTTGCTGCGCGAATAGAA+GGG | 0.627676 | 7.4:+2289438 | None:intergenic |
| CAACAGCATCAACTTGGAGG+CGG | 0.642913 | 7.4:-2289391 | MS.gene050544:CDS |
| GCATCACTCCACCACCAGAA+GGG | 0.647825 | 7.4:+2289545 | None:intergenic |
| GTGTAGCAGTACCCTTCTGG+TGG | 0.652208 | 7.4:-2289556 | MS.gene050544:intron |
| CAGGGTCAGCAGCAGCAGGG+AGG | 0.660642 | 7.4:-2289523 | MS.gene050544:CDS |
| AGCCTGTAGCAATATGAACG+TGG | 0.662936 | 7.4:-2289335 | MS.gene050544:CDS |
| TGTAGCAATATGAACGTGGG+AGG | 0.675964 | 7.4:-2289331 | MS.gene050544:CDS |
| TTGCACAGAAGTCTTATGGG+AGG | 0.683269 | 7.4:-2289241 | MS.gene050544:CDS |
| TTGCTGCGCGAATAGAAGGG+AGG | 0.689392 | 7.4:+2289441 | None:intergenic |
| TATGCAAACGAATTAACCGG+TGG | 0.694990 | 7.4:+2290335 | None:intergenic |
| TCATCGGATCAAGGTCGAGG+CGG | 0.718041 | 7.4:-2289184 | MS.gene050544:CDS |
| GCAAACCCTCTCCTCCACCG+CGG | 0.734679 | 7.4:+2289260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATCTAATTTTATTTAA+CGG | - | chr7.4:2289531-2289550 | MS.gene050544:CDS | 10.0% |
| !! | AATATTGAAAAGATAGAAAA+AGG | - | chr7.4:2289384-2289403 | MS.gene050544:CDS | 15.0% |
| !! | ATTGAATTCAATTGATATAT+AGG | + | chr7.4:2289328-2289347 | None:intergenic | 15.0% |
| !!! | ACATTGTGATATAATTTTTT+TGG | - | chr7.4:2289845-2289864 | MS.gene050544:intron | 15.0% |
| !!! | TTCATTAATTTTATGATATG+AGG | - | chr7.4:2289358-2289377 | MS.gene050544:CDS | 15.0% |
| !!! | TTTTCTATCTTTTCAATATT+GGG | + | chr7.4:2289384-2289403 | None:intergenic | 15.0% |
| !!! | TTTTTCTATCTTTTCAATAT+TGG | + | chr7.4:2289385-2289404 | None:intergenic | 15.0% |
| !! | GTATATATGTGTTTATGTAT+CGG | + | chr7.4:2289615-2289634 | None:intergenic | 20.0% |
| !!! | ATCTAATTTTATTTAACGGT+TGG | - | chr7.4:2289535-2289554 | MS.gene050544:CDS | 20.0% |
| !!! | GTTTAATCATTGATTATTGA+TGG | - | chr7.4:2289906-2289925 | MS.gene050544:intron | 20.0% |
| !!! | TCTAATTTTATTTAACGGTT+GGG | - | chr7.4:2289536-2289555 | MS.gene050544:CDS | 20.0% |
| ! | AAATATGCAAACGAATTAAC+CGG | + | chr7.4:2289155-2289174 | None:intergenic | 25.0% |
| ! | ATGAAGTTTCAGTTCTATAT+GGG | + | chr7.4:2289579-2289598 | None:intergenic | 25.0% |
| ! | GAACTGAAACTTCATATATA+AGG | - | chr7.4:2289584-2289603 | MS.gene050544:intron | 25.0% |
| ! | GGTTGTGTAAAATAAGTAAA+AGG | + | chr7.4:2289206-2289225 | None:intergenic | 25.0% |
| ! | TATGAAGTTTCAGTTCTATA+TGG | + | chr7.4:2289580-2289599 | None:intergenic | 25.0% |
| !! | AATTATGCTTGTATTCCTTT+TGG | - | chr7.4:2289465-2289484 | MS.gene050544:CDS | 25.0% |
| !! | ATTATGCTTGTATTCCTTTT+GGG | - | chr7.4:2289466-2289485 | MS.gene050544:CDS | 25.0% |
| AGATAGAAAAAGGTAAGAGA+TGG | - | chr7.4:2289394-2289413 | MS.gene050544:CDS | 30.0% | |
| ATAAAAGACATCAACGTGTT+AGG | + | chr7.4:2289513-2289532 | None:intergenic | 30.0% | |
| CATACATGTGATAACATATC+AGG | - | chr7.4:2289724-2289743 | MS.gene050544:CDS | 30.0% | |
| TAAAAGACATCAACGTGTTA+GGG | + | chr7.4:2289512-2289531 | None:intergenic | 30.0% | |
| ! | TATTTTACACAACCAGTACT+TGG | - | chr7.4:2289212-2289231 | MS.gene050544:CDS | 30.0% |
| !!! | TTGTATTCCTTTTGGGATAA+AGG | - | chr7.4:2289473-2289492 | MS.gene050544:CDS | 30.0% |
| AACATATCAGGAATCAAGCA+AGG | - | chr7.4:2289736-2289755 | MS.gene050544:CDS | 35.0% | |
| ACCTCAAATCTTCTGATGAT+GGG | - | chr7.4:2290349-2290368 | MS.gene050544:CDS | 35.0% | |
| ATTGTAGAGAGTCAGAATTC+GGG | - | chr7.4:2289261-2289280 | MS.gene050544:CDS | 35.0% | |
| GAAACTTCATATATAAGGCG+TGG | - | chr7.4:2289589-2289608 | MS.gene050544:intron | 35.0% | |
| GATTGTAGAGAGTCAGAATT+CGG | - | chr7.4:2289260-2289279 | MS.gene050544:CDS | 35.0% | |
| TACCTCAAATCTTCTGATGA+TGG | - | chr7.4:2290348-2290367 | MS.gene050544:CDS | 35.0% | |
| TTCACATCCTTTATCCCAAA+AGG | + | chr7.4:2289483-2289502 | None:intergenic | 35.0% | |
| ! | CATCAGAAGATTTGAGGTAA+AGG | + | chr7.4:2290347-2290366 | None:intergenic | 35.0% |
| ! | GAATTAGACTGCTACTTACT+CGG | + | chr7.4:2289304-2289323 | None:intergenic | 35.0% |
| AAACGAATTAACCGGTGGAA+GGG | + | chr7.4:2289147-2289166 | None:intergenic | 40.0% | |
| ACACGTTGACAAGTCGATAT+TGG | + | chr7.4:2289668-2289687 | None:intergenic | 40.0% | |
| ACTTGTTCTCATCCAAGTAC+TGG | + | chr7.4:2289227-2289246 | None:intergenic | 40.0% | |
| ATGAGTTCTTCATCGGATCA+AGG | - | chr7.4:2290291-2290310 | MS.gene050544:CDS | 40.0% | |
| GACACAACAACAACAGCTAA+TGG | - | chr7.4:2290011-2290030 | MS.gene050544:intron | 40.0% | |
| GATTGGGATGAGTTCTTCAT+CGG | - | chr7.4:2290284-2290303 | MS.gene050544:CDS | 40.0% | |
| TATGCAAACGAATTAACCGG+TGG | + | chr7.4:2289152-2289171 | None:intergenic | 40.0% | |
| TCCCATCATCAGAAGATTTG+AGG | + | chr7.4:2290353-2290372 | None:intergenic | 40.0% | |
| TGTCAACGTGTCTGCTTATT+AGG | - | chr7.4:2289677-2289696 | MS.gene050544:CDS | 40.0% | |
| ! | GGTTTGCACAGAAGTCTTAT+GGG | - | chr7.4:2290240-2290259 | MS.gene050544:CDS | 40.0% |
| AGCCTGTAGCAATATGAACG+TGG | - | chr7.4:2290149-2290168 | MS.gene050544:intron | 45.0% | |
| AGGAGGTAGTAGCTCAACAT+TGG | - | chr7.4:2290173-2290192 | MS.gene050544:intron | 45.0% | |
| AGTAGCTCAACATTGGGTTC+TGG | - | chr7.4:2290180-2290199 | MS.gene050544:intron | 45.0% | |
| AGTGGCAAGCAACAAGAGAT+TGG | - | chr7.4:2290267-2290286 | MS.gene050544:CDS | 45.0% | |
| CAAACGAATTAACCGGTGGA+AGG | + | chr7.4:2289148-2289167 | None:intergenic | 45.0% | |
| CTTCAACAGCATCAACTTGG+AGG | - | chr7.4:2290090-2290109 | MS.gene050544:intron | 45.0% | |
| GAGAATCAGCTATTGCAGCT+AGG | + | chr7.4:2289782-2289801 | None:intergenic | 45.0% | |
| GCACTTCAACAGCATCAACT+TGG | - | chr7.4:2290087-2290106 | MS.gene050544:intron | 45.0% | |
| GCCTGTAGCAATATGAACGT+GGG | - | chr7.4:2290150-2290169 | MS.gene050544:intron | 45.0% | |
| GGAGGTAGTAGCTCAACATT+GGG | - | chr7.4:2290174-2290193 | MS.gene050544:intron | 45.0% | |
| GGGTTTGCACAGAAGTCTTA+TGG | - | chr7.4:2290239-2290258 | MS.gene050544:CDS | 45.0% | |
| GTGGCAAGCAACAAGAGATT+GGG | - | chr7.4:2290268-2290287 | MS.gene050544:CDS | 45.0% | |
| TACGTAGCAGCATCAGAAGA+TGG | + | chr7.4:2289431-2289450 | None:intergenic | 45.0% | |
| TCCCACGTTCATATTGCTAC+AGG | + | chr7.4:2290154-2290173 | None:intergenic | 45.0% | |
| TGTAGCAATATGAACGTGGG+AGG | - | chr7.4:2290153-2290172 | MS.gene050544:intron | 45.0% | |
| TTTGTCACTATCCCTTCCAC+CGG | - | chr7.4:2289133-2289152 | MS.gene050544:CDS | 45.0% | |
| ! | AGAAGTCTTATGGGAGGTAG+TGG | - | chr7.4:2290249-2290268 | MS.gene050544:CDS | 45.0% |
| ! | TTGCACAGAAGTCTTATGGG+AGG | - | chr7.4:2290243-2290262 | MS.gene050544:CDS | 45.0% |
| !! | TGCTGTTGAAGTGCTGAGTA+AGG | + | chr7.4:2290081-2290100 | None:intergenic | 45.0% |
| AGCAATATGAACGTGGGAGG+AGG | - | chr7.4:2290156-2290175 | MS.gene050544:intron | 50.0% | |
| ATGGTGTAGCAGTACCCTTC+TGG | - | chr7.4:2289925-2289944 | MS.gene050544:intron | 50.0% | |
| CAACAGCATCAACTTGGAGG+CGG | - | chr7.4:2290093-2290112 | MS.gene050544:intron | 50.0% | |
| CTGTTGCTGCGCGAATAGAA+GGG | + | chr7.4:2290049-2290068 | None:intergenic | 50.0% | |
| TCAACCTCAACCACCAACCA+TGG | - | chr7.4:2289800-2289819 | MS.gene050544:intron | 50.0% | |
| TCTTCATCGGATCAAGGTCG+AGG | - | chr7.4:2290297-2290316 | MS.gene050544:CDS | 50.0% | |
| ! | AGCTCAACATTGGGTTCTGG+TGG | - | chr7.4:2290183-2290202 | MS.gene050544:intron | 50.0% |
| ! | CAACATTGGGTTCTGGTGGT+GGG | - | chr7.4:2290187-2290206 | MS.gene050544:intron | 50.0% |
| ! | GGTTGGGTTGCTGAAGTGAA+GGG | - | chr7.4:2289552-2289571 | MS.gene050544:intron | 50.0% |
| ! | TCAACATTGGGTTCTGGTGG+TGG | - | chr7.4:2290186-2290205 | MS.gene050544:intron | 50.0% |
| ! | TGCGTGTGTTTCTACCTGAC+CGG | + | chr7.4:2289826-2289845 | None:intergenic | 50.0% |
| GCATCACTCCACCACCAGAA+GGG | + | chr7.4:2289942-2289961 | None:intergenic | 55.0% | |
| GCTGTTGCTGCGCGAATAGA+AGG | + | chr7.4:2290050-2290069 | None:intergenic | 55.0% | |
| GGGTTTCCTGACTTCATCCG+CGG | - | chr7.4:2290207-2290226 | MS.gene050544:CDS | 55.0% | |
| GTGTAGCAGTACCCTTCTGG+TGG | - | chr7.4:2289928-2289947 | MS.gene050544:intron | 55.0% | |
| TAGCAGTACCCTTCTGGTGG+TGG | - | chr7.4:2289931-2289950 | MS.gene050544:intron | 55.0% | |
| TCATCGGATCAAGGTCGAGG+CGG | - | chr7.4:2290300-2290319 | MS.gene050544:CDS | 55.0% | |
| TGCATCACTCCACCACCAGA+AGG | + | chr7.4:2289943-2289962 | None:intergenic | 55.0% | |
| TTGCTGCGCGAATAGAAGGG+AGG | + | chr7.4:2290046-2290065 | None:intergenic | 55.0% | |
| TTTCCTGACTTCATCCGCGG+TGG | - | chr7.4:2290210-2290229 | MS.gene050544:CDS | 55.0% | |
| ! | CGGTTGGGTTGCTGAAGTGA+AGG | - | chr7.4:2289551-2289570 | MS.gene050544:intron | 55.0% |
| ! | TGTTTCTACCTGACCGGCCA+TGG | + | chr7.4:2289820-2289839 | None:intergenic | 55.0% |
| !! | TCTGGTGGTGGAGTGATGCA+GGG | - | chr7.4:2289943-2289962 | MS.gene050544:intron | 55.0% |
| !! | TTCTGGTGGTGGAGTGATGC+AGG | - | chr7.4:2289942-2289961 | MS.gene050544:intron | 55.0% |
| ATGCAGGGTCAGCAGCAGCA+GGG | - | chr7.4:2289958-2289977 | MS.gene050544:intron | 60.0% | |
| CAGCATCAACTTGGAGGCGG+TGG | - | chr7.4:2290096-2290115 | MS.gene050544:intron | 60.0% | |
| CCTCAACCACCAACCATGGC+CGG | - | chr7.4:2289804-2289823 | MS.gene050544:intron | 60.0% | |
| CTTGGAGGCGGTGGAACTTC+AGG | - | chr7.4:2290105-2290124 | MS.gene050544:intron | 60.0% | |
| TCTACCTGACCGGCCATGGT+TGG | + | chr7.4:2289816-2289835 | None:intergenic | 60.0% | |
| TTCATCCGCGGTGGAGGAGA+GGG | - | chr7.4:2290219-2290238 | MS.gene050544:CDS | 60.0% | |
| ! | GGGAGGAGCACACTACATGC+AGG | - | chr7.4:2289978-2289997 | MS.gene050544:intron | 60.0% |
| ACCACCAACCATGGCCGGTC+AGG | - | chr7.4:2289809-2289828 | MS.gene050544:intron | 65.0% | |
| ACCTGACCGGCCATGGTTGG+TGG | + | chr7.4:2289813-2289832 | None:intergenic | 65.0% | |
| CCTCCACCGCGGATGAAGTC+AGG | + | chr7.4:2290216-2290235 | None:intergenic | 65.0% | |
| CCTGACTTCATCCGCGGTGG+AGG | - | chr7.4:2290213-2290232 | MS.gene050544:CDS | 65.0% | |
| CTTCATCCGCGGTGGAGGAG+AGG | - | chr7.4:2290218-2290237 | MS.gene050544:CDS | 65.0% | |
| GATCAAGGTCGAGGCGGTGG+TGG | - | chr7.4:2290306-2290325 | MS.gene050544:CDS | 65.0% | |
| GATGCAGGGTCAGCAGCAGC+AGG | - | chr7.4:2289957-2289976 | MS.gene050544:intron | 65.0% | |
| GCAAACCCTCTCCTCCACCG+CGG | + | chr7.4:2290227-2290246 | None:intergenic | 65.0% | |
| TCGGATCAAGGTCGAGGCGG+TGG | - | chr7.4:2290303-2290322 | MS.gene050544:CDS | 65.0% | |
| !! | CCGGCCATGGTTGGTGGTTG+AGG | + | chr7.4:2289807-2289826 | None:intergenic | 65.0% |
| CAGGGTCAGCAGCAGCAGGG+AGG | - | chr7.4:2289961-2289980 | MS.gene050544:intron | 70.0% | |
| ! | CGAGGCGGTGGTGGTGAAGG+CGG | - | chr7.4:2290315-2290334 | MS.gene050544:CDS | 70.0% |
| ! | GGTCGAGGCGGTGGTGGTGA+AGG | - | chr7.4:2290312-2290331 | MS.gene050544:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2289129 | 2290377 | 2289129 | ID=MS.gene050544 |
| chr7.4 | mRNA | 2289129 | 2290377 | 2289129 | ID=MS.gene050544.t1;Parent=MS.gene050544 |
| chr7.4 | exon | 2290202 | 2290377 | 2290202 | ID=MS.gene050544.t1.exon1;Parent=MS.gene050544.t1 |
| chr7.4 | CDS | 2290202 | 2290377 | 2290202 | ID=cds.MS.gene050544.t1;Parent=MS.gene050544.t1 |
| chr7.4 | exon | 2289676 | 2289760 | 2289676 | ID=MS.gene050544.t1.exon2;Parent=MS.gene050544.t1 |
| chr7.4 | CDS | 2289676 | 2289760 | 2289676 | ID=cds.MS.gene050544.t1;Parent=MS.gene050544.t1 |
| chr7.4 | exon | 2289129 | 2289569 | 2289129 | ID=MS.gene050544.t1.exon3;Parent=MS.gene050544.t1 |
| chr7.4 | CDS | 2289129 | 2289569 | 2289129 | ID=cds.MS.gene050544.t1;Parent=MS.gene050544.t1 |
| Gene Sequence |
| Protein sequence |
