Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050476.t1 | KEH24570.1 | 91.7 | 218 | 17 | 1 | 17 | 233 | 1 | 218 | 2.00E-24 | 122.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050476.t1 | Q8L8A5 | 74.3 | 74 | 19 | 0 | 17 | 90 | 11 | 84 | 1.8e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050476.t1 | A0A072UFK2 | 91.7 | 218 | 17 | 1 | 17 | 233 | 1 | 218 | 1.5e-24 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050476 | MS.gene050544 | 0.992102 | 2.58E-191 | -1.69E-46 |
| MS.gene050476 | MS.gene05640 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene050476 | MS.gene06093 | 0.814116 | 1.82E-51 | -1.69E-46 |
| MS.gene050476 | MS.gene20224 | 0.83186 | 1.31E-55 | -1.69E-46 |
| MS.gene050476 | MS.gene34313 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene050476 | MS.gene34315 | 0.818604 | 1.80E-52 | -1.69E-46 |
| MS.gene050476 | MS.gene37415 | 0.82311 | 1.65E-53 | -1.69E-46 |
| MS.gene050476 | MS.gene54373 | 0.836085 | 1.15E-56 | -1.69E-46 |
| MS.gene050476 | MS.gene64883 | 0.800143 | 1.65E-48 | -1.69E-46 |
| MS.gene050476 | MS.gene66403 | 0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene050476 | MS.gene75642 | 0.8065 | 7.98E-50 | -1.69E-46 |
| MS.gene050476 | MS.gene79921 | 0.808267 | 3.37E-50 | -1.69E-46 |
| MS.gene050476 | MS.gene91174 | 0.808894 | 2.48E-50 | -1.69E-46 |
| MS.gene050476 | MS.gene98136 | 0.810632 | 1.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050476.t1 | MTR_7g115410 | 95.413 | 218 | 9 | 1 | 17 | 233 | 1 | 218 | 3.12e-96 | 280 |
| MS.gene050476.t1 | MTR_1g080590 | 57.273 | 220 | 72 | 8 | 17 | 233 | 11 | 211 | 5.34e-48 | 157 |
| MS.gene050476.t1 | MTR_1g080590 | 54.167 | 168 | 55 | 8 | 69 | 233 | 1 | 149 | 8.60e-20 | 82.8 |
| MS.gene050476.t1 | MTR_8g024650 | 50.000 | 84 | 41 | 1 | 15 | 97 | 8 | 91 | 1.63e-18 | 81.3 |
| MS.gene050476.t1 | MTR_3g097190 | 61.111 | 54 | 21 | 0 | 44 | 97 | 69 | 122 | 4.19e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050476.t1 | AT5G28640 | 51.570 | 223 | 79 | 5 | 17 | 233 | 11 | 210 | 8.97e-40 | 136 |
| MS.gene050476.t1 | AT4G00850 | 58.824 | 68 | 27 | 1 | 17 | 83 | 11 | 78 | 3.36e-19 | 83.2 |
| MS.gene050476.t1 | AT4G00850 | 51.807 | 83 | 36 | 1 | 33 | 111 | 28 | 110 | 5.65e-19 | 82.4 |
| MS.gene050476.t1 | AT1G01160 | 56.452 | 62 | 27 | 0 | 17 | 78 | 13 | 74 | 1.96e-15 | 72.4 |
| MS.gene050476.t1 | AT1G01160 | 73.333 | 45 | 12 | 0 | 34 | 78 | 64 | 108 | 7.20e-15 | 71.6 |
| MS.gene050476.t1 | AT5G28640 | 45.029 | 171 | 65 | 5 | 69 | 233 | 1 | 148 | 1.72e-12 | 63.5 |
| MS.gene050476.t1 | AT5G28640 | 45.029 | 171 | 65 | 5 | 69 | 233 | 1 | 148 | 1.72e-12 | 63.5 |
Find 76 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTTGCACAGAAGTCTTA+TGG | 0.269289 | 7.3:-2147373 | MS.gene050476:CDS |
| CTTGGAGGCGGTGGAACTTC+AGG | 0.325122 | 7.3:-2147507 | MS.gene050476:CDS |
| GGTTGTGTAAAATAAGTAAA+AGG | 0.347586 | 7.3:+2148409 | None:intergenic |
| TCAACATTGGGTTCTGGTGG+TGG | 0.361229 | 7.3:-2147426 | MS.gene050476:CDS |
| GATTGTAGAGAGTCAGAATT+CGG | 0.378404 | 7.3:-2148352 | MS.gene050476:CDS |
| TTCTGGTGGTGGAGTGATGC+AGG | 0.385903 | 7.3:-2147670 | MS.gene050476:CDS |
| GCTGTTGCTGCGCGAATAGA+AGG | 0.398335 | 7.3:+2147565 | None:intergenic |
| ATGGTGTAGCAGTACCCTTC+TGG | 0.398459 | 7.3:-2147687 | MS.gene050476:intron |
| TACCTCAAATCTTCTGATGA+TGG | 0.413883 | 7.3:-2147264 | MS.gene050476:CDS |
| CAACATTGGGTTCTGGTGGT+GGG | 0.423263 | 7.3:-2147425 | MS.gene050476:CDS |
| GATGCAGGGTCAGCAGCAGC+AGG | 0.427997 | 7.3:-2147655 | MS.gene050476:CDS |
| CCTCCACCGCGGATGAAGTC+AGG | 0.431259 | 7.3:+2147399 | None:intergenic |
| AGTGGCAAGCAACAAGAGAT+TGG | 0.434502 | 7.3:-2147345 | MS.gene050476:CDS |
| GGTTTGCACAGAAGTCTTAT+GGG | 0.434506 | 7.3:-2147372 | MS.gene050476:CDS |
| CATCAGAAGATTTGAGGTAA+AGG | 0.438000 | 7.3:+2147268 | None:intergenic |
| GGTCGAGGCGGTGGTGGTGA+AGG | 0.439472 | 7.3:-2147300 | MS.gene050476:CDS |
| TCCCATCATCAGAAGATTTG+AGG | 0.441249 | 7.3:+2147262 | None:intergenic |
| CCGGCCATGGTTGGTGGTTG+AGG | 0.446740 | 7.3:+2147808 | None:intergenic |
| TAGCAGTACCCTTCTGGTGG+TGG | 0.451363 | 7.3:-2147681 | MS.gene050476:intron |
| AAATATGCAAACGAATTAAC+CGG | 0.453740 | 7.3:+2148460 | None:intergenic |
| AGTAGCTCAACATTGGGTTC+TGG | 0.464044 | 7.3:-2147432 | MS.gene050476:CDS |
| TCCCACGTTCATATTGCTAC+AGG | 0.468413 | 7.3:+2147461 | None:intergenic |
| ACCACCAACCATGGCCGGTC+AGG | 0.472281 | 7.3:-2147803 | MS.gene050476:intron |
| GACACAACAACAACAGCTAA+TGG | 0.478063 | 7.3:-2147601 | MS.gene050476:CDS |
| GCACTTCAACAGCATCAACT+TGG | 0.489725 | 7.3:-2147525 | MS.gene050476:CDS |
| TTCATCCGCGGTGGAGGAGA+GGG | 0.494151 | 7.3:-2147393 | MS.gene050476:CDS |
| ACTTGTTCTCATCCAAGTAC+TGG | 0.496057 | 7.3:+2148388 | None:intergenic |
| TGCTGTTGAAGTGCTGAGTA+AGG | 0.496707 | 7.3:+2147534 | None:intergenic |
| ACCTCAAATCTTCTGATGAT+GGG | 0.498318 | 7.3:-2147263 | MS.gene050476:CDS |
| CCTGACTTCATCCGCGGTGG+AGG | 0.498540 | 7.3:-2147399 | MS.gene050476:CDS |
| TCGGATCAAGGTCGAGGCGG+TGG | 0.500503 | 7.3:-2147309 | MS.gene050476:CDS |
| ATTGTAGAGAGTCAGAATTC+GGG | 0.501834 | 7.3:-2148351 | MS.gene050476:CDS |
| ACCTGACCGGCCATGGTTGG+TGG | 0.503390 | 7.3:+2147802 | None:intergenic |
| GTGGCAAGCAACAAGAGATT+GGG | 0.506357 | 7.3:-2147344 | MS.gene050476:CDS |
| CAGCATCAACTTGGAGGCGG+TGG | 0.509178 | 7.3:-2147516 | MS.gene050476:CDS |
| AGAAGTCTTATGGGAGGTAG+TGG | 0.518354 | 7.3:-2147363 | MS.gene050476:CDS |
| GATCAAGGTCGAGGCGGTGG+TGG | 0.520726 | 7.3:-2147306 | MS.gene050476:CDS |
| GATTGGGATGAGTTCTTCAT+CGG | 0.525078 | 7.3:-2147328 | MS.gene050476:CDS |
| TGTTTCTACCTGACCGGCCA+TGG | 0.527220 | 7.3:+2147795 | None:intergenic |
| AGCTCAACATTGGGTTCTGG+TGG | 0.534520 | 7.3:-2147429 | MS.gene050476:CDS |
| ATGAGTTCTTCATCGGATCA+AGG | 0.547272 | 7.3:-2147321 | MS.gene050476:CDS |
| CTTCATCCGCGGTGGAGGAG+AGG | 0.548468 | 7.3:-2147394 | MS.gene050476:CDS |
| AGGAGGTAGTAGCTCAACAT+TGG | 0.549524 | 7.3:-2147439 | MS.gene050476:CDS |
| CGAGGCGGTGGTGGTGAAGG+CGG | 0.550384 | 7.3:-2147297 | MS.gene050476:CDS |
| GGAGGTAGTAGCTCAACATT+GGG | 0.550428 | 7.3:-2147438 | MS.gene050476:CDS |
| AGCAATATGAACGTGGGAGG+AGG | 0.551007 | 7.3:-2147456 | MS.gene050476:CDS |
| CCTCAACCACCAACCATGGC+CGG | 0.554155 | 7.3:-2147808 | MS.gene050476:CDS |
| CTTCAACAGCATCAACTTGG+AGG | 0.554957 | 7.3:-2147522 | MS.gene050476:CDS |
| TCTACCTGACCGGCCATGGT+TGG | 0.555887 | 7.3:+2147799 | None:intergenic |
| TTTGTCACTATCCCTTCCAC+CGG | 0.567981 | 7.3:-2148479 | MS.gene050476:CDS |
| CAAACGAATTAACCGGTGGA+AGG | 0.571275 | 7.3:+2148467 | None:intergenic |
| TGCATGTGTTTCTACCTGAC+CGG | 0.577540 | 7.3:+2147789 | None:intergenic |
| TGCATCACTCCACCACCAGA+AGG | 0.580900 | 7.3:+2147672 | None:intergenic |
| TCTGGTGGTGGAGTGATGCA+GGG | 0.593405 | 7.3:-2147669 | MS.gene050476:CDS |
| TCTTCATCGGATCAAGGTCG+AGG | 0.593840 | 7.3:-2147315 | MS.gene050476:CDS |
| GAGAATCAGCTATTGCAGCT+AGG | 0.595794 | 7.3:+2147833 | None:intergenic |
| AAACGAATTAACCGGTGGAA+GGG | 0.600361 | 7.3:+2148468 | None:intergenic |
| TTTCCTGACTTCATCCGCGG+TGG | 0.603311 | 7.3:-2147402 | MS.gene050476:CDS |
| AACATATCAGGAATCAAGCA+AGG | 0.610316 | 7.3:-2147876 | MS.gene050476:intron |
| GGGTTTCCTGACTTCATCCG+CGG | 0.614235 | 7.3:-2147405 | MS.gene050476:CDS |
| GCCTGTAGCAATATGAACGT+GGG | 0.617388 | 7.3:-2147462 | MS.gene050476:CDS |
| GGGAGGAGCACACTACATGC+AGG | 0.618698 | 7.3:-2147634 | MS.gene050476:CDS |
| TCAACCTCAACCACCAACCA+TGG | 0.620168 | 7.3:-2147812 | MS.gene050476:CDS |
| ATGCAGGGTCAGCAGCAGCA+GGG | 0.624777 | 7.3:-2147654 | MS.gene050476:CDS |
| CTGTTGCTGCGCGAATAGAA+GGG | 0.627676 | 7.3:+2147566 | None:intergenic |
| CAACAGCATCAACTTGGAGG+CGG | 0.642913 | 7.3:-2147519 | MS.gene050476:CDS |
| GCATCACTCCACCACCAGAA+GGG | 0.647825 | 7.3:+2147673 | None:intergenic |
| GTGTAGCAGTACCCTTCTGG+TGG | 0.652208 | 7.3:-2147684 | MS.gene050476:intron |
| CAGGGTCAGCAGCAGCAGGG+AGG | 0.660642 | 7.3:-2147651 | MS.gene050476:CDS |
| AGCCTGTAGCAATATGAACG+TGG | 0.662936 | 7.3:-2147463 | MS.gene050476:CDS |
| TGTAGCAATATGAACGTGGG+AGG | 0.675964 | 7.3:-2147459 | MS.gene050476:CDS |
| TTGCACAGAAGTCTTATGGG+AGG | 0.683269 | 7.3:-2147369 | MS.gene050476:CDS |
| TTGCTGCGCGAATAGAAGGG+AGG | 0.689392 | 7.3:+2147569 | None:intergenic |
| TATGCAAACGAATTAACCGG+TGG | 0.694990 | 7.3:+2148463 | None:intergenic |
| TCATCGGATCAAGGTCGAGG+CGG | 0.718041 | 7.3:-2147312 | MS.gene050476:CDS |
| GCAAACCCTCTCCTCCACCG+CGG | 0.734679 | 7.3:+2147388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATCTAATTTTATTTAA+CGG | - | chr7.3:2147659-2147678 | MS.gene050476:CDS | 10.0% |
| !! | AATATTGAAAAGATAGAAAA+AGG | - | chr7.3:2147512-2147531 | MS.gene050476:CDS | 15.0% |
| !! | ATTGAATTCAATTGATATAT+AGG | + | chr7.3:2147456-2147475 | None:intergenic | 15.0% |
| !!! | ACATTGTGATATAATTTTTT+TGG | - | chr7.3:2147973-2147992 | MS.gene050476:intron | 15.0% |
| !!! | TTCATTAATTTTATGATATG+AGG | - | chr7.3:2147486-2147505 | MS.gene050476:CDS | 15.0% |
| !!! | TTTTCTATCTTTTCAATATT+GGG | + | chr7.3:2147512-2147531 | None:intergenic | 15.0% |
| !!! | TTTTTCTATCTTTTCAATAT+TGG | + | chr7.3:2147513-2147532 | None:intergenic | 15.0% |
| !! | GTATATATGTGTTTATGTAT+CGG | + | chr7.3:2147743-2147762 | None:intergenic | 20.0% |
| !!! | ATCTAATTTTATTTAACGGT+TGG | - | chr7.3:2147663-2147682 | MS.gene050476:CDS | 20.0% |
| !!! | GTTTAATCATTGATTATTGA+TGG | - | chr7.3:2148034-2148053 | MS.gene050476:intron | 20.0% |
| !!! | TCTAATTTTATTTAACGGTT+GGG | - | chr7.3:2147664-2147683 | MS.gene050476:CDS | 20.0% |
| ! | AAATATGCAAACGAATTAAC+CGG | + | chr7.3:2147283-2147302 | None:intergenic | 25.0% |
| ! | ATGAAGTTTCAGTTCTATAT+GGG | + | chr7.3:2147707-2147726 | None:intergenic | 25.0% |
| ! | GAACTGAAACTTCATATATA+AGG | - | chr7.3:2147712-2147731 | MS.gene050476:intron | 25.0% |
| ! | GGTTGTGTAAAATAAGTAAA+AGG | + | chr7.3:2147334-2147353 | None:intergenic | 25.0% |
| ! | TATGAAGTTTCAGTTCTATA+TGG | + | chr7.3:2147708-2147727 | None:intergenic | 25.0% |
| !! | AATTATGCTTGTATTCCTTT+TGG | - | chr7.3:2147593-2147612 | MS.gene050476:CDS | 25.0% |
| !! | ATTATGCTTGTATTCCTTTT+GGG | - | chr7.3:2147594-2147613 | MS.gene050476:CDS | 25.0% |
| AGATAGAAAAAGGTAAGAGA+TGG | - | chr7.3:2147522-2147541 | MS.gene050476:CDS | 30.0% | |
| ATAAAAGACATCAACGTGTT+AGG | + | chr7.3:2147641-2147660 | None:intergenic | 30.0% | |
| CATACATGTGATAACATATC+AGG | - | chr7.3:2147852-2147871 | MS.gene050476:CDS | 30.0% | |
| TAAAAGACATCAACGTGTTA+GGG | + | chr7.3:2147640-2147659 | None:intergenic | 30.0% | |
| ! | TATTTTACACAACCAGTACT+TGG | - | chr7.3:2147340-2147359 | MS.gene050476:CDS | 30.0% |
| !!! | TTGTATTCCTTTTGGGATAA+AGG | - | chr7.3:2147601-2147620 | MS.gene050476:CDS | 30.0% |
| AACATATCAGGAATCAAGCA+AGG | - | chr7.3:2147864-2147883 | MS.gene050476:CDS | 35.0% | |
| ACCTCAAATCTTCTGATGAT+GGG | - | chr7.3:2148477-2148496 | MS.gene050476:CDS | 35.0% | |
| ATTGTAGAGAGTCAGAATTC+GGG | - | chr7.3:2147389-2147408 | MS.gene050476:CDS | 35.0% | |
| GAAACTTCATATATAAGGCG+TGG | - | chr7.3:2147717-2147736 | MS.gene050476:intron | 35.0% | |
| GATTGTAGAGAGTCAGAATT+CGG | - | chr7.3:2147388-2147407 | MS.gene050476:CDS | 35.0% | |
| TACCTCAAATCTTCTGATGA+TGG | - | chr7.3:2148476-2148495 | MS.gene050476:CDS | 35.0% | |
| TTCACATCCTTTATCCCAAA+AGG | + | chr7.3:2147611-2147630 | None:intergenic | 35.0% | |
| ! | CATCAGAAGATTTGAGGTAA+AGG | + | chr7.3:2148475-2148494 | None:intergenic | 35.0% |
| ! | GAATTAGACTGCTACTTACT+CGG | + | chr7.3:2147432-2147451 | None:intergenic | 35.0% |
| AAACGAATTAACCGGTGGAA+GGG | + | chr7.3:2147275-2147294 | None:intergenic | 40.0% | |
| ACACGTTGACAAGTCGATAT+TGG | + | chr7.3:2147796-2147815 | None:intergenic | 40.0% | |
| ACTTGTTCTCATCCAAGTAC+TGG | + | chr7.3:2147355-2147374 | None:intergenic | 40.0% | |
| ATGAGTTCTTCATCGGATCA+AGG | - | chr7.3:2148419-2148438 | MS.gene050476:CDS | 40.0% | |
| GACACAACAACAACAGCTAA+TGG | - | chr7.3:2148139-2148158 | MS.gene050476:intron | 40.0% | |
| GATTGGGATGAGTTCTTCAT+CGG | - | chr7.3:2148412-2148431 | MS.gene050476:CDS | 40.0% | |
| TATGCAAACGAATTAACCGG+TGG | + | chr7.3:2147280-2147299 | None:intergenic | 40.0% | |
| TCCCATCATCAGAAGATTTG+AGG | + | chr7.3:2148481-2148500 | None:intergenic | 40.0% | |
| TGTCAACGTGTCTGCTTATT+AGG | - | chr7.3:2147805-2147824 | MS.gene050476:CDS | 40.0% | |
| ! | GGTTTGCACAGAAGTCTTAT+GGG | - | chr7.3:2148368-2148387 | MS.gene050476:CDS | 40.0% |
| AGCCTGTAGCAATATGAACG+TGG | - | chr7.3:2148277-2148296 | MS.gene050476:intron | 45.0% | |
| AGGAGGTAGTAGCTCAACAT+TGG | - | chr7.3:2148301-2148320 | MS.gene050476:intron | 45.0% | |
| AGTAGCTCAACATTGGGTTC+TGG | - | chr7.3:2148308-2148327 | MS.gene050476:intron | 45.0% | |
| AGTGGCAAGCAACAAGAGAT+TGG | - | chr7.3:2148395-2148414 | MS.gene050476:CDS | 45.0% | |
| CAAACGAATTAACCGGTGGA+AGG | + | chr7.3:2147276-2147295 | None:intergenic | 45.0% | |
| CTTCAACAGCATCAACTTGG+AGG | - | chr7.3:2148218-2148237 | MS.gene050476:intron | 45.0% | |
| GAGAATCAGCTATTGCAGCT+AGG | + | chr7.3:2147910-2147929 | None:intergenic | 45.0% | |
| GCACTTCAACAGCATCAACT+TGG | - | chr7.3:2148215-2148234 | MS.gene050476:intron | 45.0% | |
| GCCTGTAGCAATATGAACGT+GGG | - | chr7.3:2148278-2148297 | MS.gene050476:intron | 45.0% | |
| GGAGGTAGTAGCTCAACATT+GGG | - | chr7.3:2148302-2148321 | MS.gene050476:intron | 45.0% | |
| GGGTTTGCACAGAAGTCTTA+TGG | - | chr7.3:2148367-2148386 | MS.gene050476:CDS | 45.0% | |
| GTGGCAAGCAACAAGAGATT+GGG | - | chr7.3:2148396-2148415 | MS.gene050476:CDS | 45.0% | |
| TACGTAGCAGCATCAGAAGA+TGG | + | chr7.3:2147559-2147578 | None:intergenic | 45.0% | |
| TCCCACGTTCATATTGCTAC+AGG | + | chr7.3:2148282-2148301 | None:intergenic | 45.0% | |
| TGTAGCAATATGAACGTGGG+AGG | - | chr7.3:2148281-2148300 | MS.gene050476:intron | 45.0% | |
| TTTGTCACTATCCCTTCCAC+CGG | - | chr7.3:2147261-2147280 | MS.gene050476:CDS | 45.0% | |
| ! | AGAAGTCTTATGGGAGGTAG+TGG | - | chr7.3:2148377-2148396 | MS.gene050476:CDS | 45.0% |
| ! | TGCATGTGTTTCTACCTGAC+CGG | + | chr7.3:2147954-2147973 | None:intergenic | 45.0% |
| ! | TTGCACAGAAGTCTTATGGG+AGG | - | chr7.3:2148371-2148390 | MS.gene050476:CDS | 45.0% |
| !! | TGCTGTTGAAGTGCTGAGTA+AGG | + | chr7.3:2148209-2148228 | None:intergenic | 45.0% |
| AGCAATATGAACGTGGGAGG+AGG | - | chr7.3:2148284-2148303 | MS.gene050476:intron | 50.0% | |
| ATGGTGTAGCAGTACCCTTC+TGG | - | chr7.3:2148053-2148072 | MS.gene050476:intron | 50.0% | |
| CAACAGCATCAACTTGGAGG+CGG | - | chr7.3:2148221-2148240 | MS.gene050476:intron | 50.0% | |
| CTGTTGCTGCGCGAATAGAA+GGG | + | chr7.3:2148177-2148196 | None:intergenic | 50.0% | |
| TCAACCTCAACCACCAACCA+TGG | - | chr7.3:2147928-2147947 | MS.gene050476:intron | 50.0% | |
| TCTTCATCGGATCAAGGTCG+AGG | - | chr7.3:2148425-2148444 | MS.gene050476:CDS | 50.0% | |
| ! | AGCTCAACATTGGGTTCTGG+TGG | - | chr7.3:2148311-2148330 | MS.gene050476:intron | 50.0% |
| ! | CAACATTGGGTTCTGGTGGT+GGG | - | chr7.3:2148315-2148334 | MS.gene050476:intron | 50.0% |
| ! | GGTTGGGTTGCTGAAGTGAA+GGG | - | chr7.3:2147680-2147699 | MS.gene050476:intron | 50.0% |
| ! | TCAACATTGGGTTCTGGTGG+TGG | - | chr7.3:2148314-2148333 | MS.gene050476:intron | 50.0% |
| GCATCACTCCACCACCAGAA+GGG | + | chr7.3:2148070-2148089 | None:intergenic | 55.0% | |
| GCTGTTGCTGCGCGAATAGA+AGG | + | chr7.3:2148178-2148197 | None:intergenic | 55.0% | |
| GGGTTTCCTGACTTCATCCG+CGG | - | chr7.3:2148335-2148354 | MS.gene050476:CDS | 55.0% | |
| GTGTAGCAGTACCCTTCTGG+TGG | - | chr7.3:2148056-2148075 | MS.gene050476:intron | 55.0% | |
| TAGCAGTACCCTTCTGGTGG+TGG | - | chr7.3:2148059-2148078 | MS.gene050476:intron | 55.0% | |
| TCATCGGATCAAGGTCGAGG+CGG | - | chr7.3:2148428-2148447 | MS.gene050476:CDS | 55.0% | |
| TGCATCACTCCACCACCAGA+AGG | + | chr7.3:2148071-2148090 | None:intergenic | 55.0% | |
| TTGCTGCGCGAATAGAAGGG+AGG | + | chr7.3:2148174-2148193 | None:intergenic | 55.0% | |
| TTTCCTGACTTCATCCGCGG+TGG | - | chr7.3:2148338-2148357 | MS.gene050476:CDS | 55.0% | |
| ! | CGGTTGGGTTGCTGAAGTGA+AGG | - | chr7.3:2147679-2147698 | MS.gene050476:intron | 55.0% |
| ! | TGTTTCTACCTGACCGGCCA+TGG | + | chr7.3:2147948-2147967 | None:intergenic | 55.0% |
| !! | TCTGGTGGTGGAGTGATGCA+GGG | - | chr7.3:2148071-2148090 | MS.gene050476:intron | 55.0% |
| !! | TTCTGGTGGTGGAGTGATGC+AGG | - | chr7.3:2148070-2148089 | MS.gene050476:intron | 55.0% |
| ATGCAGGGTCAGCAGCAGCA+GGG | - | chr7.3:2148086-2148105 | MS.gene050476:intron | 60.0% | |
| CAGCATCAACTTGGAGGCGG+TGG | - | chr7.3:2148224-2148243 | MS.gene050476:intron | 60.0% | |
| CCTCAACCACCAACCATGGC+CGG | - | chr7.3:2147932-2147951 | MS.gene050476:intron | 60.0% | |
| CTTGGAGGCGGTGGAACTTC+AGG | - | chr7.3:2148233-2148252 | MS.gene050476:intron | 60.0% | |
| TCTACCTGACCGGCCATGGT+TGG | + | chr7.3:2147944-2147963 | None:intergenic | 60.0% | |
| TTCATCCGCGGTGGAGGAGA+GGG | - | chr7.3:2148347-2148366 | MS.gene050476:CDS | 60.0% | |
| ! | GGGAGGAGCACACTACATGC+AGG | - | chr7.3:2148106-2148125 | MS.gene050476:intron | 60.0% |
| ACCACCAACCATGGCCGGTC+AGG | - | chr7.3:2147937-2147956 | MS.gene050476:intron | 65.0% | |
| ACCTGACCGGCCATGGTTGG+TGG | + | chr7.3:2147941-2147960 | None:intergenic | 65.0% | |
| CCTCCACCGCGGATGAAGTC+AGG | + | chr7.3:2148344-2148363 | None:intergenic | 65.0% | |
| CCTGACTTCATCCGCGGTGG+AGG | - | chr7.3:2148341-2148360 | MS.gene050476:CDS | 65.0% | |
| CTTCATCCGCGGTGGAGGAG+AGG | - | chr7.3:2148346-2148365 | MS.gene050476:CDS | 65.0% | |
| GATCAAGGTCGAGGCGGTGG+TGG | - | chr7.3:2148434-2148453 | MS.gene050476:CDS | 65.0% | |
| GATGCAGGGTCAGCAGCAGC+AGG | - | chr7.3:2148085-2148104 | MS.gene050476:intron | 65.0% | |
| GCAAACCCTCTCCTCCACCG+CGG | + | chr7.3:2148355-2148374 | None:intergenic | 65.0% | |
| TCGGATCAAGGTCGAGGCGG+TGG | - | chr7.3:2148431-2148450 | MS.gene050476:CDS | 65.0% | |
| !! | CCGGCCATGGTTGGTGGTTG+AGG | + | chr7.3:2147935-2147954 | None:intergenic | 65.0% |
| CAGGGTCAGCAGCAGCAGGG+AGG | - | chr7.3:2148089-2148108 | MS.gene050476:intron | 70.0% | |
| ! | CGAGGCGGTGGTGGTGAAGG+CGG | - | chr7.3:2148443-2148462 | MS.gene050476:CDS | 70.0% |
| ! | GGTCGAGGCGGTGGTGGTGA+AGG | - | chr7.3:2148440-2148459 | MS.gene050476:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2147257 | 2148505 | 2147257 | ID=MS.gene050476 |
| chr7.3 | mRNA | 2147257 | 2148505 | 2147257 | ID=MS.gene050476.t1;Parent=MS.gene050476 |
| chr7.3 | exon | 2148330 | 2148505 | 2148330 | ID=MS.gene050476.t1.exon1;Parent=MS.gene050476.t1 |
| chr7.3 | CDS | 2148330 | 2148505 | 2148330 | ID=cds.MS.gene050476.t1;Parent=MS.gene050476.t1 |
| chr7.3 | exon | 2147804 | 2147888 | 2147804 | ID=MS.gene050476.t1.exon2;Parent=MS.gene050476.t1 |
| chr7.3 | CDS | 2147804 | 2147888 | 2147804 | ID=cds.MS.gene050476.t1;Parent=MS.gene050476.t1 |
| chr7.3 | exon | 2147257 | 2147697 | 2147257 | ID=MS.gene050476.t1.exon3;Parent=MS.gene050476.t1 |
| chr7.3 | CDS | 2147257 | 2147697 | 2147257 | ID=cds.MS.gene050476.t1;Parent=MS.gene050476.t1 |
| Gene Sequence |
| Protein sequence |
