Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98371.t1 | RHN51172.1 | 88.2 | 238 | 11 | 1 | 1 | 221 | 1 | 238 | 4.90E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98371.t1 | Q84V25 | 65.2 | 227 | 62 | 1 | 14 | 223 | 8 | 234 | 2.8e-78 | 293.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98371.t1 | A0A396HCY0 | 88.2 | 238 | 11 | 1 | 1 | 221 | 1 | 238 | 3.5e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051364 | MS.gene98371 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene98371 | 0.811015 | 8.65E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene98371 | 0.801129 | 1.04E-48 | -1.69E-46 |
| MS.gene056591 | MS.gene98371 | 0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene057548 | MS.gene98371 | 0.83287 | 7.39E-56 | -1.69E-46 |
| MS.gene057549 | MS.gene98371 | 0.819316 | 1.24E-52 | -1.69E-46 |
| MS.gene058099 | MS.gene98371 | 0.803046 | 4.20E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene98371 | 0.822591 | 2.18E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene98371 | 0.811617 | 6.40E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98371.t1 | MTR_8g064610 | 57.203 | 236 | 82 | 3 | 6 | 223 | 62 | 296 | 3.03e-89 | 268 |
| MS.gene98371.t1 | MTR_7g034395 | 64.286 | 224 | 63 | 1 | 17 | 223 | 6 | 229 | 7.74e-81 | 245 |
| MS.gene98371.t1 | MTR_6g012160 | 60.352 | 227 | 73 | 1 | 14 | 223 | 6 | 232 | 2.00e-80 | 243 |
| MS.gene98371.t1 | MTR_6g012170 | 61.233 | 227 | 71 | 1 | 14 | 223 | 6 | 232 | 3.57e-80 | 243 |
| MS.gene98371.t1 | MTR_6g039950 | 90.123 | 81 | 8 | 0 | 1 | 81 | 1 | 81 | 1.82e-50 | 159 |
| MS.gene98371.t1 | MTR_8g035630 | 43.049 | 223 | 103 | 6 | 20 | 223 | 5 | 222 | 1.88e-46 | 157 |
| MS.gene98371.t1 | MTR_8g035880 | 43.049 | 223 | 103 | 6 | 20 | 223 | 5 | 222 | 6.23e-46 | 156 |
| MS.gene98371.t1 | MTR_1319s0010 | 81.481 | 108 | 3 | 1 | 80 | 170 | 2 | 109 | 7.14e-42 | 138 |
| MS.gene98371.t1 | MTR_4g033205 | 34.146 | 205 | 115 | 6 | 37 | 223 | 23 | 225 | 3.12e-22 | 93.6 |
| MS.gene98371.t1 | MTR_4g032995 | 34.146 | 205 | 115 | 6 | 37 | 223 | 23 | 225 | 3.16e-22 | 93.6 |
| MS.gene98371.t1 | MTR_4g036310 | 31.034 | 232 | 138 | 7 | 24 | 237 | 11 | 238 | 5.39e-22 | 92.8 |
| MS.gene98371.t1 | MTR_7g055743 | 31.963 | 219 | 128 | 6 | 37 | 237 | 63 | 278 | 6.05e-22 | 93.2 |
| MS.gene98371.t1 | MTR_2g078520 | 32.203 | 236 | 130 | 8 | 9 | 223 | 16 | 242 | 1.75e-20 | 89.0 |
| MS.gene98371.t1 | MTR_6g012140 | 68.519 | 54 | 17 | 0 | 170 | 223 | 3 | 56 | 4.34e-20 | 83.6 |
| MS.gene98371.t1 | MTR_2g012420 | 29.680 | 219 | 135 | 7 | 20 | 223 | 2 | 216 | 6.96e-19 | 84.3 |
| MS.gene98371.t1 | MTR_2g012380 | 29.091 | 220 | 135 | 7 | 20 | 223 | 2 | 216 | 3.20e-17 | 79.0 |
| MS.gene98371.t1 | MTR_4g050760 | 29.091 | 220 | 135 | 7 | 20 | 223 | 2 | 216 | 4.30e-17 | 79.3 |
| MS.gene98371.t1 | MTR_2g012380 | 29.091 | 220 | 135 | 7 | 20 | 223 | 2 | 216 | 4.30e-17 | 79.3 |
| MS.gene98371.t1 | MTR_4g086400 | 30.612 | 196 | 117 | 6 | 45 | 223 | 174 | 367 | 1.52e-16 | 78.6 |
| MS.gene98371.t1 | MTR_4g086400 | 30.612 | 196 | 117 | 6 | 45 | 223 | 314 | 507 | 1.78e-16 | 78.6 |
| MS.gene98371.t1 | MTR_4g086410 | 31.122 | 196 | 116 | 7 | 45 | 223 | 314 | 507 | 1.52e-15 | 75.9 |
| MS.gene98371.t1 | MTR_4g036260 | 29.018 | 224 | 123 | 8 | 33 | 237 | 11 | 217 | 1.27e-13 | 69.3 |
| MS.gene98371.t1 | MTR_3g093620 | 33.023 | 215 | 120 | 7 | 26 | 221 | 18 | 227 | 1.56e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98371.t1 | AT1G23740 | 57.269 | 227 | 79 | 2 | 14 | 223 | 73 | 298 | 1.45e-83 | 254 |
| MS.gene98371.t1 | AT4G21580 | 31.532 | 222 | 127 | 7 | 20 | 223 | 2 | 216 | 2.84e-21 | 90.9 |
| MS.gene98371.t1 | AT3G15090 | 32.895 | 228 | 123 | 8 | 17 | 223 | 30 | 248 | 5.19e-20 | 87.8 |
| MS.gene98371.t1 | AT4G21580 | 31.081 | 222 | 122 | 8 | 20 | 223 | 2 | 210 | 1.61e-19 | 85.9 |
| MS.gene98371.t1 | AT3G56460 | 35.545 | 211 | 112 | 8 | 30 | 221 | 23 | 228 | 2.17e-19 | 85.9 |
| MS.gene98371.t1 | AT4G13010 | 29.524 | 210 | 128 | 5 | 37 | 228 | 23 | 230 | 5.30e-19 | 84.7 |
| MS.gene98371.t1 | AT1G49670 | 31.551 | 187 | 115 | 6 | 49 | 223 | 318 | 503 | 2.45e-15 | 75.1 |
| MS.gene98371.t1 | AT1G49670 | 28.095 | 210 | 115 | 6 | 49 | 223 | 318 | 526 | 3.39e-15 | 74.7 |
| MS.gene98371.t1 | AT4G21580 | 29.091 | 165 | 97 | 4 | 74 | 223 | 24 | 183 | 1.41e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGGAAGCTTTGCTATTC+AGG | 0.194050 | 6.3:+34234317 | MS.gene98371:CDS |
| CAGCTTGCCAAACATGTTTA+TGG | 0.207808 | 6.3:+34235544 | MS.gene98371:intron |
| ATCTCTGTAGATAAGTTATT+TGG | 0.243807 | 6.3:+34235735 | MS.gene98371:intron |
| TCTTGTAATCCAAAGGATTA+AGG | 0.249562 | 6.3:-34232888 | None:intergenic |
| TGCTGCTTCCCTTAATCCTT+TGG | 0.281231 | 6.3:+34232879 | MS.gene98371:CDS |
| ACAAAGTGCCAAGAATCTTT+AGG | 0.297216 | 6.3:-34234097 | None:intergenic |
| CTTTCAAACCTAAAGATTCT+TGG | 0.317314 | 6.3:+34234089 | MS.gene98371:CDS |
| TTCTAAAGTTACATCCAAAT+TGG | 0.322662 | 6.3:+34232812 | MS.gene98371:CDS |
| AGTTGAGGTATGGACCAATT+TGG | 0.333043 | 6.3:-34232826 | None:intergenic |
| AAGTGAAGTGGTGAAATTTA+AGG | 0.335007 | 6.3:+34234028 | MS.gene98371:CDS |
| GTACCAGGCTTTGATGTTGC+TGG | 0.358510 | 6.3:+34233987 | MS.gene98371:CDS |
| TTGGGAGGTGCTGGTGGAGT+TGG | 0.368713 | 6.3:+34234300 | MS.gene98371:CDS |
| CTTGTAATCCAAAGGATTAA+GGG | 0.390845 | 6.3:-34232887 | None:intergenic |
| GTCATCTTTGAGTTGAGGTA+TGG | 0.412969 | 6.3:-34232836 | None:intergenic |
| AGATGCACCATAAACATGTT+TGG | 0.415334 | 6.3:-34235551 | None:intergenic |
| AAGGTTGGAGATGAAATATA+TGG | 0.416415 | 6.3:+34234047 | MS.gene98371:CDS |
| TGGCAAATCTATCCTTGTAT+TGG | 0.426588 | 6.3:+34234281 | MS.gene98371:CDS |
| GGCAAATCTATCCTTGTATT+GGG | 0.430637 | 6.3:+34234282 | MS.gene98371:CDS |
| TTCTCCTTTGTATAATCGAT+TGG | 0.434467 | 6.3:-34235637 | None:intergenic |
| TGTAACTTTAGAATATCTAA+TGG | 0.437701 | 6.3:-34232802 | None:intergenic |
| ATCCTTGTATTGGGAGGTGC+TGG | 0.456385 | 6.3:+34234291 | MS.gene98371:CDS |
| TGCTAGCATTCCTTTAGCTA+TGG | 0.475592 | 6.3:+34234218 | MS.gene98371:CDS |
| GAGGATGCATGCCTTGTTCA+AGG | 0.477132 | 6.3:+34232909 | MS.gene98371:CDS |
| TCTGTAGATAAGTTATTTGG+TGG | 0.499714 | 6.3:+34235738 | MS.gene98371:intron |
| TTCCAACTCATACAAAAGCT+TGG | 0.500152 | 6.3:+34232758 | MS.gene98371:CDS |
| GAGAGAGCTGAGCTTTCTGC+TGG | 0.500936 | 6.3:+34234261 | MS.gene98371:CDS |
| CAACAACCTTGATGAGGACT+TGG | 0.502267 | 6.3:-34232858 | None:intergenic |
| GTTGGAATAGTAATATTAGT+AGG | 0.508279 | 6.3:-34232742 | None:intergenic |
| CACCAGCACCTCCCAATACA+AGG | 0.516323 | 6.3:-34234293 | None:intergenic |
| TAAGCTGTCTCCATAGCTAA+AGG | 0.523414 | 6.3:-34234228 | None:intergenic |
| ACTTGGTCATCTTTGAGTTG+AGG | 0.531211 | 6.3:-34232841 | None:intergenic |
| GCTATGGAGACAGCTTATGA+AGG | 0.536850 | 6.3:+34234234 | MS.gene98371:CDS |
| ATAGCTAAAGGAATGCTAGC+AGG | 0.539615 | 6.3:-34234216 | None:intergenic |
| GAAGTGGTGAAATTTAAGGT+TGG | 0.542994 | 6.3:+34234032 | MS.gene98371:CDS |
| CTTGTATTGGGAGGTGCTGG+TGG | 0.545611 | 6.3:+34234294 | MS.gene98371:CDS |
| TTAATCCTTTGGATTACAAG+AGG | 0.561708 | 6.3:+34232890 | MS.gene98371:CDS |
| AGGATCAGTGTCCTTGAACA+AGG | 0.563159 | 6.3:-34232920 | None:intergenic |
| TGCTGGCATAGTAATTAAAG+TGG | 0.567681 | 6.3:+34234004 | MS.gene98371:CDS |
| TGCATCCTCTTGTAATCCAA+AGG | 0.579435 | 6.3:-34232895 | None:intergenic |
| GCTTGGTTCTACTCTGAACA+TGG | 0.593786 | 6.3:+34232775 | MS.gene98371:CDS |
| ATAGCAGCAACTTCAAGCAC+CGG | 0.596605 | 6.3:+34235577 | MS.gene98371:CDS |
| TTGTGTGAGAAGATTGTACC+AGG | 0.597513 | 6.3:+34233972 | MS.gene98371:intron |
| ATGCCAGCAACATCAAAGCC+TGG | 0.598693 | 6.3:-34233990 | None:intergenic |
| AATTAAAGTGGGAAGTGAAG+TGG | 0.601756 | 6.3:+34234016 | MS.gene98371:CDS |
| TATGGTGACATCAATGAGGA+AGG | 0.611730 | 6.3:+34234065 | MS.gene98371:CDS |
| AATTAACATACAGGTAGATG+AGG | 0.613228 | 6.3:-34232940 | None:intergenic |
| CTTGCCAATCGATTATACAA+AGG | 0.618334 | 6.3:+34235633 | MS.gene98371:CDS |
| AGATGACCAAGTCCTCATCA+AGG | 0.619767 | 6.3:+34232852 | MS.gene98371:CDS |
| GCTGGCATAGTAATTAAAGT+GGG | 0.631964 | 6.3:+34234005 | MS.gene98371:CDS |
| AAATCTATCCTTGTATTGGG+AGG | 0.643144 | 6.3:+34234285 | MS.gene98371:CDS |
| ATTTACTATACTAATCCACA+AGG | 0.653842 | 6.3:-34235780 | None:intergenic |
| AAGCAGCAACAACCTTGATG+AGG | 0.675221 | 6.3:-34232864 | None:intergenic |
| AATATATGGTGACATCAATG+AGG | 0.688125 | 6.3:+34234061 | MS.gene98371:CDS |
| TTTACTATACTAATCCACAA+GGG | 0.716879 | 6.3:-34235779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAAAAAATTAAA+AGG | - | chr6.3:34235049-34235068 | None:intergenic | 0.0% |
| !! | AATAAATAAAAAAATTAAAA+GGG | - | chr6.3:34235048-34235067 | None:intergenic | 0.0% |
| !!! | TAATTTTTTTATTTATTTAA+GGG | + | chr6.3:34235051-34235070 | MS.gene98371:intron | 0.0% |
| !!! | TTAATTTTTTTATTTATTTA+AGG | + | chr6.3:34235050-34235069 | MS.gene98371:intron | 0.0% |
| !! | AAATTAATAAAAAAATTGTG+AGG | + | chr6.3:34233557-34233576 | MS.gene98371:intron | 10.0% |
| !!! | AGTGTTATTTTTATATATAA+TGG | - | chr6.3:34233872-34233891 | None:intergenic | 10.0% |
| !!! | ATTTTTTTATTTATTTAAGG+GGG | + | chr6.3:34235053-34235072 | MS.gene98371:intron | 10.0% |
| !!! | CTTTTTCTTATATTTTATTA+CGG | + | chr6.3:34234447-34234466 | MS.gene98371:intron | 10.0% |
| !! | AAAATTATTAATACTCTTGA+GGG | + | chr6.3:34233580-34233599 | MS.gene98371:intron | 15.0% |
| !! | AATATTACATAGACTAAAAT+AGG | - | chr6.3:34235199-34235218 | None:intergenic | 15.0% |
| !! | ATATGTATGTACAAATAAAT+AGG | - | chr6.3:34235717-34235736 | None:intergenic | 15.0% |
| !! | ATATTACATAGACTAAAATA+GGG | - | chr6.3:34235198-34235217 | None:intergenic | 15.0% |
| !! | ATTAATTCTTCAAATTTGAT+AGG | - | chr6.3:34233629-34233648 | None:intergenic | 15.0% |
| !! | CAAAAATATATTTACATGTT+TGG | + | chr6.3:34235518-34235537 | MS.gene98371:intron | 15.0% |
| !! | GTAATAGGTATTAAAAAATT+GGG | + | chr6.3:34235440-34235459 | MS.gene98371:intron | 15.0% |
| !! | TAATAGGTATTAAAAAATTG+GGG | + | chr6.3:34235441-34235460 | MS.gene98371:intron | 15.0% |
| !! | TGTAATAGGTATTAAAAAAT+TGG | + | chr6.3:34235439-34235458 | MS.gene98371:intron | 15.0% |
| !! | TTTATAAAAATTGAACATCA+AGG | + | chr6.3:34233780-34233799 | MS.gene98371:intron | 15.0% |
| !!! | AAAATTGACTTTTTGTAAAA+GGG | - | chr6.3:34234939-34234958 | None:intergenic | 15.0% |
| !!! | ACTTTTTATAAATTGTGTTT+AGG | - | chr6.3:34233124-34233143 | None:intergenic | 15.0% |
| !!! | CTTTTTGTTTATATTTCATT+CGG | - | chr6.3:34234388-34234407 | None:intergenic | 15.0% |
| !!! | TGAATGTTTTTTTAAGAAAA+TGG | - | chr6.3:34233928-34233947 | None:intergenic | 15.0% |
| !!! | TTTATATATAATGGTTCTAA+AGG | - | chr6.3:34233863-34233882 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTATATTTCATTC+GGG | - | chr6.3:34234387-34234406 | None:intergenic | 15.0% |
| !! | AAAAACAAAATCTCATAGAA+GGG | - | chr6.3:34233178-34233197 | None:intergenic | 20.0% |
| !! | AAAATAAAGCTTAGATTCTT+TGG | - | chr6.3:34234164-34234183 | None:intergenic | 20.0% |
| !! | ACACATTATATGTAGAAAAA+GGG | + | chr6.3:34233337-34233356 | MS.gene98371:intron | 20.0% |
| !! | AGTTATATGAATCAAGTATT+AGG | + | chr6.3:34235371-34235390 | MS.gene98371:intron | 20.0% |
| !! | CAAAAAAAAAATACGCTTTA+AGG | - | chr6.3:34233496-34233515 | None:intergenic | 20.0% |
| !! | GAAAATTATTAATACTCTTG+AGG | + | chr6.3:34233579-34233598 | MS.gene98371:intron | 20.0% |
| !! | GTTATATGAATCAAGTATTA+GGG | + | chr6.3:34235372-34235391 | MS.gene98371:intron | 20.0% |
| !! | GTTATTAAAAAATGATGAGA+TGG | - | chr6.3:34235024-34235043 | None:intergenic | 20.0% |
| !! | TAAAAACAAAATCTCATAGA+AGG | - | chr6.3:34233179-34233198 | None:intergenic | 20.0% |
| !! | TAAAGAGAAAATTAACATAC+AGG | - | chr6.3:34232952-34232971 | None:intergenic | 20.0% |
| !! | TACACATTATATGTAGAAAA+AGG | + | chr6.3:34233336-34233355 | MS.gene98371:intron | 20.0% |
| !! | TTAACAAATCTTACAAAGTT+AGG | + | chr6.3:34235079-34235098 | MS.gene98371:intron | 20.0% |
| !! | TTATATGAATCAAGTATTAG+GGG | + | chr6.3:34235373-34235392 | MS.gene98371:intron | 20.0% |
| !!! | AAAACCGTTATTTAATTTGT+AGG | - | chr6.3:34234900-34234919 | None:intergenic | 20.0% |
| !!! | AAACCGTTATTTAATTTGTA+GGG | - | chr6.3:34234899-34234918 | None:intergenic | 20.0% |
| !!! | AAAGCGTATTTTTTTTTTGA+GGG | + | chr6.3:34233497-34233516 | MS.gene98371:intron | 20.0% |
| !!! | AATATTTTTGTTTTAATGCG+TGG | + | chr6.3:34234539-34234558 | MS.gene98371:intron | 20.0% |
| !!! | ATATTTCTAGAAGTTAGTTA+AGG | - | chr6.3:34234665-34234684 | None:intergenic | 20.0% |
| !!! | CAAAATTGACTTTTTGTAAA+AGG | - | chr6.3:34234940-34234959 | None:intergenic | 20.0% |
| !!! | TAAAGCGTATTTTTTTTTTG+AGG | + | chr6.3:34233496-34233515 | MS.gene98371:intron | 20.0% |
| !!! | TAACAACTCTTGTTATTATT+TGG | + | chr6.3:34233027-34233046 | MS.gene98371:intron | 20.0% |
| !!! | TGTAACTTTAGAATATCTAA+TGG | - | chr6.3:34232805-34232824 | None:intergenic | 20.0% |
| ! | AAATTTGATAGGACCTATAT+GGG | - | chr6.3:34233618-34233637 | None:intergenic | 25.0% |
| ! | AATTTGGCATTATAATCTCA+AGG | + | chr6.3:34233821-34233840 | MS.gene98371:intron | 25.0% |
| ! | ATCTCTGTAGATAAGTTATT+TGG | + | chr6.3:34235735-34235754 | MS.gene98371:intron | 25.0% |
| ! | CAACAAGAATCAATTGTAAT+AGG | + | chr6.3:34235425-34235444 | MS.gene98371:intron | 25.0% |
| ! | CACATTATATGTAGAAAAAG+GGG | + | chr6.3:34233338-34233357 | MS.gene98371:intron | 25.0% |
| ! | GAGTACAATAATAGAATCTA+GGG | - | chr6.3:34234815-34234834 | None:intergenic | 25.0% |
| ! | GATCCCTACAAATTAAATAA+CGG | + | chr6.3:34234893-34234912 | MS.gene98371:intron | 25.0% |
| ! | GTTGGAATAGTAATATTAGT+AGG | - | chr6.3:34232745-34232764 | None:intergenic | 25.0% |
| ! | TAAAAAAAACTCAGCTCTTA+AGG | - | chr6.3:34233392-34233411 | None:intergenic | 25.0% |
| ! | TAAGAAAATTCAGCTTACTT+TGG | + | chr6.3:34233084-34233103 | MS.gene98371:intron | 25.0% |
| ! | TCAATTAAGTGATGAGAATT+TGG | + | chr6.3:34233805-34233824 | MS.gene98371:intron | 25.0% |
| ! | TGAGTACAATAATAGAATCT+AGG | - | chr6.3:34234816-34234835 | None:intergenic | 25.0% |
| ! | TTAGTCATCTTCATATGATA+AGG | - | chr6.3:34235337-34235356 | None:intergenic | 25.0% |
| !! | CTTCATATGATAAGGAATTT+TGG | - | chr6.3:34235329-34235348 | None:intergenic | 25.0% |
| !! | GTAAGCTGAATTTTCTTAAT+AGG | - | chr6.3:34233082-34233101 | None:intergenic | 25.0% |
| !! | TACACTATATCAAACTTTTC+TGG | - | chr6.3:34235676-34235695 | None:intergenic | 25.0% |
| !! | TTCTAGAAATATCTAGAACT+GGG | + | chr6.3:34234673-34234692 | MS.gene98371:intron | 25.0% |
| !!! | CTGAGTTTTTTTTATACACT+AGG | + | chr6.3:34233398-34233417 | MS.gene98371:intron | 25.0% |
| !!! | CTTTAACTTGTAAAGTTAGA+AGG | - | chr6.3:34234862-34234881 | None:intergenic | 25.0% |
| !!! | TTCTAAAGTTACATCCAAAT+TGG | + | chr6.3:34232812-34232831 | MS.gene98371:CDS | 25.0% |
| !!! | TTTTTTAAGAAAATGGCAAG+AGG | - | chr6.3:34233921-34233940 | None:intergenic | 25.0% |
| AAGATCTTAGCTTAGTTAGT+AGG | + | chr6.3:34233308-34233327 | MS.gene98371:intron | 30.0% | |
| AAGGTTGGAGATGAAATATA+TGG | + | chr6.3:34234047-34234066 | MS.gene98371:CDS | 30.0% | |
| AAGTGAAGTGGTGAAATTTA+AGG | + | chr6.3:34234028-34234047 | MS.gene98371:CDS | 30.0% | |
| AATAGCTGAAGAGAGATTAT+TGG | + | chr6.3:34234130-34234149 | MS.gene98371:intron | 30.0% | |
| AATATATGGTGACATCAATG+AGG | + | chr6.3:34234061-34234080 | MS.gene98371:CDS | 30.0% | |
| AATTAACATACAGGTAGATG+AGG | - | chr6.3:34232943-34232962 | None:intergenic | 30.0% | |
| ACAAATCTTACAAAGTTAGG+AGG | + | chr6.3:34235082-34235101 | MS.gene98371:intron | 30.0% | |
| ACTAACTAAGCTAAGATCTT+GGG | - | chr6.3:34233308-34233327 | None:intergenic | 30.0% | |
| AGATCTTAGCTTAGTTAGTA+GGG | + | chr6.3:34233309-34233328 | MS.gene98371:intron | 30.0% | |
| CAAATTTGATAGGACCTATA+TGG | - | chr6.3:34233619-34233638 | None:intergenic | 30.0% | |
| CTGAAAATTAGCATACATTG+AGG | + | chr6.3:34235492-34235511 | MS.gene98371:intron | 30.0% | |
| CTTGTAATCCAAAGGATTAA+GGG | - | chr6.3:34232890-34232909 | None:intergenic | 30.0% | |
| CTTTCAAACCTAAAGATTCT+TGG | + | chr6.3:34234089-34234108 | MS.gene98371:CDS | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr6.3:34235278-34235297 | MS.gene98371:intron | 30.0% | |
| GATATAGTGTATGATGTAGT+AGG | + | chr6.3:34235685-34235704 | MS.gene98371:intron | 30.0% | |
| TAAAAAATTGGGGAGTGAAA+AGG | + | chr6.3:34235451-34235470 | MS.gene98371:intron | 30.0% | |
| TACTAACTAAGCTAAGATCT+TGG | - | chr6.3:34233309-34233328 | None:intergenic | 30.0% | |
| TCTGTAGATAAGTTATTTGG+TGG | + | chr6.3:34235738-34235757 | MS.gene98371:intron | 30.0% | |
| TCTTGTAATCCAAAGGATTA+AGG | - | chr6.3:34232891-34232910 | None:intergenic | 30.0% | |
| TGTAAAAGGGAGTAAAGATA+GGG | - | chr6.3:34234926-34234945 | None:intergenic | 30.0% | |
| TTAATCCTTTGGATTACAAG+AGG | + | chr6.3:34232890-34232909 | MS.gene98371:CDS | 30.0% | |
| TTCTCCTTTGTATAATCGAT+TGG | - | chr6.3:34235640-34235659 | None:intergenic | 30.0% | |
| TTGTAAAAGGGAGTAAAGAT+AGG | - | chr6.3:34234927-34234946 | None:intergenic | 30.0% | |
| TTGTTTATATTTCATTCGGG+AGG | - | chr6.3:34234384-34234403 | None:intergenic | 30.0% | |
| ! | ACAAGTTAAAGTTGCGATTT+TGG | + | chr6.3:34234871-34234890 | MS.gene98371:intron | 30.0% |
| ! | CATATGATAAGGAATTTTGG+TGG | - | chr6.3:34235326-34235345 | None:intergenic | 30.0% |
| ! | CTTCTAGAAATATCTAGAAC+TGG | + | chr6.3:34234672-34234691 | MS.gene98371:intron | 30.0% |
| ! | TTTCTAGAAGTTAGTTAAGG+CGG | - | chr6.3:34234662-34234681 | None:intergenic | 30.0% |
| AAATCTATCCTTGTATTGGG+AGG | + | chr6.3:34234285-34234304 | MS.gene98371:CDS | 35.0% | |
| AATTAAAGTGGGAAGTGAAG+TGG | + | chr6.3:34234016-34234035 | MS.gene98371:CDS | 35.0% | |
| AGATGCACCATAAACATGTT+TGG | - | chr6.3:34235554-34235573 | None:intergenic | 35.0% | |
| CTAACTAAGCTAAGATCTTG+GGG | - | chr6.3:34233307-34233326 | None:intergenic | 35.0% | |
| CTTGCCAATCGATTATACAA+AGG | + | chr6.3:34235633-34235652 | MS.gene98371:CDS | 35.0% | |
| GAATCTCAACATACTCTTTC+AGG | - | chr6.3:34233525-34233544 | None:intergenic | 35.0% | |
| GCTGGCATAGTAATTAAAGT+GGG | + | chr6.3:34234005-34234024 | MS.gene98371:CDS | 35.0% | |
| GGCAAATCTATCCTTGTATT+GGG | + | chr6.3:34234282-34234301 | MS.gene98371:CDS | 35.0% | |
| GTAAAAGGGAGTAAAGATAG+GGG | - | chr6.3:34234925-34234944 | None:intergenic | 35.0% | |
| TGCTGGCATAGTAATTAAAG+TGG | + | chr6.3:34234004-34234023 | MS.gene98371:CDS | 35.0% | |
| TGGCAAATCTATCCTTGTAT+TGG | + | chr6.3:34234281-34234300 | MS.gene98371:CDS | 35.0% | |
| TGGTATTTATAGCCCTTTGT+GGG | - | chr6.3:34234751-34234770 | None:intergenic | 35.0% | |
| TTCCAACTCATACAAAAGCT+TGG | + | chr6.3:34232758-34232777 | MS.gene98371:CDS | 35.0% | |
| TTCGGGAGGAAATAGTTAAT+AGG | - | chr6.3:34234370-34234389 | None:intergenic | 35.0% | |
| ! | AACCAAGCTTTTGTATGAGT+TGG | - | chr6.3:34232763-34232782 | None:intergenic | 35.0% |
| ! | ACAAAGTGCCAAGAATCTTT+AGG | - | chr6.3:34234100-34234119 | None:intergenic | 35.0% |
| ! | CCTCAAAAACTCGATTTTTC+CGG | - | chr6.3:34235599-34235618 | None:intergenic | 35.0% |
| ! | GAAGTGGTGAAATTTAAGGT+TGG | + | chr6.3:34234032-34234051 | MS.gene98371:CDS | 35.0% |
| ! | GTGAATTTTGTCACCCATAT+AGG | + | chr6.3:34233602-34233621 | MS.gene98371:intron | 35.0% |
| ! | TGAGATTAGTTCAGTTGGTA+GGG | + | chr6.3:34235256-34235275 | MS.gene98371:intron | 35.0% |
| !! | AATCGAGTTTTTGAGGAAGT+TGG | + | chr6.3:34235603-34235622 | MS.gene98371:CDS | 35.0% |
| !! | ATCGAGTTTTTGAGGAAGTT+GGG | + | chr6.3:34235604-34235623 | MS.gene98371:CDS | 35.0% |
| !! | TAAGGAATTTTGGTGGTTAC+CGG | - | chr6.3:34235319-34235338 | None:intergenic | 35.0% |
| !! | TGGTGGATCATTTTCATAAG+TGG | + | chr6.3:34235755-34235774 | MS.gene98371:CDS | 35.0% |
| AAAGCCCTATAGAAAGGCTT+AGG | + | chr6.3:34234588-34234607 | MS.gene98371:intron | 40.0% | |
| ACGAGGACTTTCGTATGATA+TGG | - | chr6.3:34235237-34235256 | None:intergenic | 40.0% | |
| AGGGCTATAAATACCACTCT+TGG | + | chr6.3:34234755-34234774 | MS.gene98371:intron | 40.0% | |
| AGTTGAGGTATGGACCAATT+TGG | - | chr6.3:34232829-34232848 | None:intergenic | 40.0% | |
| ATAGCTAAAGGAATGCTAGC+AGG | - | chr6.3:34234219-34234238 | None:intergenic | 40.0% | |
| CAGCTCTTAAGGTGAATAAG+TGG | - | chr6.3:34233381-34233400 | None:intergenic | 40.0% | |
| CAGCTTGCCAAACATGTTTA+TGG | + | chr6.3:34235544-34235563 | MS.gene98371:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+TGG | + | chr6.3:34235285-34235304 | MS.gene98371:intron | 40.0% | |
| CTTCAAAATGATCCCAAGAG+TGG | - | chr6.3:34234771-34234790 | None:intergenic | 40.0% | |
| GGGCTATAAATACCACTCTT+GGG | + | chr6.3:34234756-34234775 | MS.gene98371:intron | 40.0% | |
| GTGGTATTTATAGCCCTTTG+TGG | - | chr6.3:34234752-34234771 | None:intergenic | 40.0% | |
| TAAGCTGTCTCCATAGCTAA+AGG | - | chr6.3:34234231-34234250 | None:intergenic | 40.0% | |
| TATGGTGACATCAATGAGGA+AGG | + | chr6.3:34234065-34234084 | MS.gene98371:CDS | 40.0% | |
| TGCATCCTCTTGTAATCCAA+AGG | - | chr6.3:34232898-34232917 | None:intergenic | 40.0% | |
| TGCTAGCATTCCTTTAGCTA+TGG | + | chr6.3:34234218-34234237 | MS.gene98371:CDS | 40.0% | |
| TTGTGTGAGAAGATTGTACC+AGG | + | chr6.3:34233972-34233991 | MS.gene98371:intron | 40.0% | |
| ! | AGCCTTTCTATAGGGCTTTT+AGG | - | chr6.3:34234587-34234606 | None:intergenic | 40.0% |
| ! | CCGGAAAAATCGAGTTTTTG+AGG | + | chr6.3:34235596-34235615 | MS.gene98371:CDS | 40.0% |
| ! | GACCGTCAACATGTTTCTAA+GGG | + | chr6.3:34234561-34234580 | MS.gene98371:intron | 40.0% |
| ! | GTGAGATTAGTTCAGTTGGT+AGG | + | chr6.3:34235255-34235274 | MS.gene98371:intron | 40.0% |
| ! | TTTTCATAAGTGGTCCCTTG+TGG | + | chr6.3:34235765-34235784 | MS.gene98371:CDS | 40.0% |
| !! | AAGGAATTTTGGTGGTTACC+GGG | - | chr6.3:34235318-34235337 | None:intergenic | 40.0% |
| !! | ACTTGGTCATCTTTGAGTTG+AGG | - | chr6.3:34232844-34232863 | None:intergenic | 40.0% |
| !! | AGTTGGAAGCTTTGCTATTC+AGG | + | chr6.3:34234317-34234336 | MS.gene98371:CDS | 40.0% |
| !! | GTCATCTTTGAGTTGAGGTA+TGG | - | chr6.3:34232839-34232858 | None:intergenic | 40.0% |
| AAGCAGCAACAACCTTGATG+AGG | - | chr6.3:34232867-34232886 | None:intergenic | 45.0% | |
| AGATGACCAAGTCCTCATCA+AGG | + | chr6.3:34232852-34232871 | MS.gene98371:CDS | 45.0% | |
| AGGATCAGTGTCCTTGAACA+AGG | - | chr6.3:34232923-34232942 | None:intergenic | 45.0% | |
| ATAGCAGCAACTTCAAGCAC+CGG | + | chr6.3:34235577-34235596 | MS.gene98371:CDS | 45.0% | |
| CAACAACCTTGATGAGGACT+TGG | - | chr6.3:34232861-34232880 | None:intergenic | 45.0% | |
| CCAACTGAACTAATCTCACG+AGG | - | chr6.3:34235254-34235273 | None:intergenic | 45.0% | |
| GCTATGGAGACAGCTTATGA+AGG | + | chr6.3:34234234-34234253 | MS.gene98371:CDS | 45.0% | |
| GGCCCTTAGAAACATGTTGA+CGG | - | chr6.3:34234566-34234585 | None:intergenic | 45.0% | |
| GGCCTAAAAGCCCTATAGAA+AGG | + | chr6.3:34234582-34234601 | MS.gene98371:intron | 45.0% | |
| TTACTTAAGCCCCAAGCAAG+CGG | - | chr6.3:34234716-34234735 | None:intergenic | 45.0% | |
| ! | CCTCGTGAGATTAGTTCAGT+TGG | + | chr6.3:34235251-34235270 | MS.gene98371:intron | 45.0% |
| ! | GGACCGTCAACATGTTTCTA+AGG | + | chr6.3:34234560-34234579 | MS.gene98371:intron | 45.0% |
| ! | GTGAATAAGTGGAGTGTCTG+AGG | - | chr6.3:34233370-34233389 | None:intergenic | 45.0% |
| ! | TGCTGCTTCCCTTAATCCTT+TGG | + | chr6.3:34232879-34232898 | MS.gene98371:CDS | 45.0% |
| !! | AGGAATTTTGGTGGTTACCG+GGG | - | chr6.3:34235317-34235336 | None:intergenic | 45.0% |
| !! | GCTTGGTTCTACTCTGAACA+TGG | + | chr6.3:34232775-34232794 | MS.gene98371:CDS | 45.0% |
| !!! | AATTTTTTTATTTATTTAAG+GGG | + | chr6.3:34235052-34235071 | MS.gene98371:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTATGAAT+TGG | - | chr6.3:34233676-34233695 | None:intergenic | 5.0% |
| ACGCTAACACAAGCCCACAA+AGG | + | chr6.3:34234735-34234754 | MS.gene98371:intron | 50.0% | |
| ATGCCAGCAACATCAAAGCC+TGG | - | chr6.3:34233993-34234012 | None:intergenic | 50.0% | |
| CGCTAACACAAGCCCACAAA+GGG | + | chr6.3:34234736-34234755 | MS.gene98371:intron | 50.0% | |
| GGCGCCTAAGCCTTTCTATA+GGG | - | chr6.3:34234595-34234614 | None:intergenic | 50.0% | |
| ! | ATCCTTGTATTGGGAGGTGC+TGG | + | chr6.3:34234291-34234310 | MS.gene98371:CDS | 50.0% |
| ! | GAGGATGCATGCCTTGTTCA+AGG | + | chr6.3:34232909-34232928 | MS.gene98371:CDS | 50.0% |
| ! | GTACCAGGCTTTGATGTTGC+TGG | + | chr6.3:34233987-34234006 | MS.gene98371:CDS | 50.0% |
| AAGGTCCGTGGTTCAAACCC+CGG | + | chr6.3:34235297-34235316 | MS.gene98371:intron | 55.0% | |
| ACCTACAGCTCCGCTTGCTT+GGG | + | chr6.3:34234703-34234722 | MS.gene98371:intron | 55.0% | |
| CACCAGCACCTCCCAATACA+AGG | - | chr6.3:34234296-34234315 | None:intergenic | 55.0% | |
| GAGAGAGCTGAGCTTTCTGC+TGG | + | chr6.3:34234261-34234280 | MS.gene98371:CDS | 55.0% | |
| GCTTCAGGAGCCCTTCTAGA+GGG | - | chr6.3:34234616-34234635 | None:intergenic | 55.0% | |
| GGGCGCCTAAGCCTTTCTAT+AGG | - | chr6.3:34234596-34234615 | None:intergenic | 55.0% | |
| GGTTACCGGGGTTTGAACCA+CGG | - | chr6.3:34235305-34235324 | None:intergenic | 55.0% | |
| GTTAGTTAAGGCGGCACCTC+TGG | - | chr6.3:34234653-34234672 | None:intergenic | 55.0% | |
| TAGAAGGGCTCCTGAAGCCT+AGG | + | chr6.3:34234618-34234637 | MS.gene98371:intron | 55.0% | |
| ! | TTAAGGCGGCACCTCTGGAA+GGG | - | chr6.3:34234648-34234667 | None:intergenic | 55.0% |
| !! | CGCATGAGTGAGCGTTGACT+TGG | - | chr6.3:34234964-34234983 | None:intergenic | 55.0% |
| !! | CTTGTATTGGGAGGTGCTGG+TGG | + | chr6.3:34234294-34234313 | MS.gene98371:CDS | 55.0% |
| AGGCTTAGGCGCCCTCTAGA+AGG | + | chr6.3:34234602-34234621 | MS.gene98371:intron | 60.0% | |
| CCTACAGCTCCGCTTGCTTG+GGG | + | chr6.3:34234704-34234723 | MS.gene98371:intron | 60.0% | |
| GACCTACAGCTCCGCTTGCT+TGG | + | chr6.3:34234702-34234721 | MS.gene98371:intron | 60.0% | |
| GGCTTCAGGAGCCCTTCTAG+AGG | - | chr6.3:34234617-34234636 | None:intergenic | 60.0% | |
| GTTAAGGCGGCACCTCTGGA+AGG | - | chr6.3:34234649-34234668 | None:intergenic | 60.0% | |
| ! | GGCTTAGGCGCCCTCTAGAA+GGG | + | chr6.3:34234603-34234622 | MS.gene98371:intron | 60.0% |
| !! | TTGGGAGGTGCTGGTGGAGT+TGG | + | chr6.3:34234300-34234319 | MS.gene98371:CDS | 60.0% |
| CCCCAAGCAAGCGGAGCTGT+AGG | - | chr6.3:34234707-34234726 | None:intergenic | 65.0% | |
| ! | ACCTCTGGAAGGGCGCGCCT+AGG | - | chr6.3:34234638-34234657 | None:intergenic | 70.0% |
| ! | GAAGGGCGCGCCTAGGCTTC+AGG | - | chr6.3:34234631-34234650 | None:intergenic | 70.0% |
| GCCTAGGCGCGCCCTTCCAG+AGG | + | chr6.3:34234634-34234653 | MS.gene98371:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 34232715 | 34235792 | 34232715 | ID=MS.gene98371 |
| chr6.3 | mRNA | 34232715 | 34235792 | 34232715 | ID=MS.gene98371.t1;Parent=MS.gene98371 |
| chr6.3 | exon | 34232715 | 34232951 | 34232715 | ID=MS.gene98371.t1.exon1;Parent=MS.gene98371.t1 |
| chr6.3 | CDS | 34232715 | 34232951 | 34232715 | ID=cds.MS.gene98371.t1;Parent=MS.gene98371.t1 |
| chr6.3 | exon | 34233984 | 34234123 | 34233984 | ID=MS.gene98371.t1.exon2;Parent=MS.gene98371.t1 |
| chr6.3 | CDS | 34233984 | 34234123 | 34233984 | ID=cds.MS.gene98371.t1;Parent=MS.gene98371.t1 |
| chr6.3 | exon | 34234206 | 34234338 | 34234206 | ID=MS.gene98371.t1.exon3;Parent=MS.gene98371.t1 |
| chr6.3 | CDS | 34234206 | 34234338 | 34234206 | ID=cds.MS.gene98371.t1;Parent=MS.gene98371.t1 |
| chr6.3 | exon | 34235547 | 34235702 | 34235547 | ID=MS.gene98371.t1.exon4;Parent=MS.gene98371.t1 |
| chr6.3 | CDS | 34235547 | 34235702 | 34235547 | ID=cds.MS.gene98371.t1;Parent=MS.gene98371.t1 |
| chr6.3 | exon | 34235745 | 34235792 | 34235745 | ID=MS.gene98371.t1.exon5;Parent=MS.gene98371.t1 |
| chr6.3 | CDS | 34235745 | 34235792 | 34235745 | ID=cds.MS.gene98371.t1;Parent=MS.gene98371.t1 |
| Gene Sequence |
| Protein sequence |
