Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059315.t1 | XP_003596971.2 | 95.4 | 349 | 16 | 0 | 1 | 349 | 1 | 349 | 7.30E-188 | 666.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059315.t1 | Q9SLN8 | 40.4 | 349 | 197 | 7 | 1 | 347 | 1 | 340 | 3.0e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059315.t1 | G7ITX8 | 95.4 | 349 | 16 | 0 | 1 | 349 | 1 | 349 | 5.3e-188 | 666.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene059315 | 0.803219 | 3.87E-49 | -1.69E-46 |
| MS.gene052129 | MS.gene059315 | 0.803115 | 4.07E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene059315 | 0.827072 | 1.91E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene059315 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene059315 | 0.822476 | 2.32E-53 | -1.69E-46 |
| MS.gene056591 | MS.gene059315 | 0.821466 | 3.98E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene059315 | 0.833359 | 5.58E-56 | -1.69E-46 |
| MS.gene058099 | MS.gene059315 | 0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene059315 | 0.811993 | 5.30E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene059315 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene061777 | 0.821915 | 3.13E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene063148 | 0.80333 | 3.67E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene065426 | 0.821184 | 4.62E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene066309 | 0.825035 | 5.84E-54 | -1.69E-46 |
| MS.gene059315 | MS.gene068638 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene070457 | 0.816988 | 4.16E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene072074 | 0.80234 | 5.88E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene072979 | 0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene073165 | 0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene08407 | 0.818073 | 2.37E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene08721 | 0.813911 | 2.01E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene21274 | 0.832109 | 1.14E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene21768 | 0.805432 | 1.34E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene24521 | 0.8054 | 1.36E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene24522 | 0.809585 | 1.76E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene24540 | 0.804224 | 2.39E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene24882 | 0.802642 | 5.09E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene26475 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene27790 | 0.810973 | 8.83E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene28077 | 0.830118 | 3.52E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene32972 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene33496 | 0.807912 | 4.01E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene34093 | 0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene35208 | 0.811731 | 6.04E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene35464 | 0.803601 | 3.23E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene35828 | 0.940367 | 2.63E-100 | -1.69E-46 |
| MS.gene059315 | MS.gene35853 | 0.803064 | 4.17E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene35871 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene35924 | 0.95753 | 2.17E-115 | -1.69E-46 |
| MS.gene059315 | MS.gene38375 | 0.80842 | 3.12E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene44877 | 0.82819 | 1.03E-54 | -1.69E-46 |
| MS.gene059315 | MS.gene45228 | 0.82883 | 7.23E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene45482 | 0.813848 | 2.08E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene45776 | 0.806152 | 9.45E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene46197 | 0.819839 | 9.41E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene46198 | 0.827405 | 1.59E-54 | -1.69E-46 |
| MS.gene059315 | MS.gene46337 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene50503 | 0.800654 | 1.30E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene53435 | 0.837186 | 6.03E-57 | -1.69E-46 |
| MS.gene059315 | MS.gene54252 | 0.802858 | 4.60E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene54347 | 0.80454 | 2.06E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene55079 | 0.829941 | 3.88E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene55899 | 0.811232 | 7.76E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene55961 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene56765 | 0.817287 | 3.57E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene57291 | 0.82182 | 3.29E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene59333 | 0.807813 | 4.21E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene59415 | 0.841867 | 3.66E-58 | -1.69E-46 |
| MS.gene059315 | MS.gene59487 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene60041 | 0.80414 | 2.49E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene63638 | 0.803 | 4.30E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene63642 | 0.820479 | 6.71E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene63652 | 0.805344 | 1.40E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene64708 | 0.826341 | 2.86E-54 | -1.69E-46 |
| MS.gene059315 | MS.gene64791 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene67819 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene67889 | 0.812607 | 3.89E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene69635 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene72323 | 0.840518 | 8.28E-58 | -1.69E-46 |
| MS.gene059315 | MS.gene73200 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene73788 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene75261 | 0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene77349 | 0.818723 | 1.69E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene77350 | 0.803208 | 3.89E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene77768 | 0.810702 | 1.01E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene77842 | 0.813394 | 2.62E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene77852 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene79517 | 0.806159 | 9.42E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene81725 | 0.840846 | 6.80E-58 | -1.69E-46 |
| MS.gene059315 | MS.gene84193 | 0.816414 | 5.60E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene85496 | 0.822657 | 2.11E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene88769 | 0.823308 | 1.49E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene88880 | 0.820261 | 7.53E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene88882 | 0.817151 | 3.83E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene89380 | 0.801014 | 1.10E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene89382 | 0.830033 | 3.69E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene89655 | 0.814958 | 1.18E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene89932 | 0.826161 | 3.16E-54 | -1.69E-46 |
| MS.gene059315 | MS.gene90522 | 0.805501 | 1.29E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene91215 | 0.811129 | 8.17E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene91317 | 0.828255 | 9.95E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene92886 | 0.810825 | 9.51E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene95132 | 0.835945 | 1.25E-56 | -1.69E-46 |
| MS.gene059315 | MS.gene95478 | 0.808251 | 3.40E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene95596 | 0.810936 | 8.99E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene96299 | 0.826586 | 2.50E-54 | -1.69E-46 |
| MS.gene059315 | MS.gene96701 | 0.820934 | 5.27E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene97597 | 0.800781 | 1.23E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene98078 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene98272 | 0.817153 | 3.82E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene98371 | 0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene98479 | 0.801279 | 9.70E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene98480 | 0.822295 | 2.56E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene99043 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene99188 | 0.81647 | 5.44E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059315.t1 | MTR_2g088190 | 95.415 | 349 | 16 | 0 | 1 | 349 | 1 | 349 | 0.0 | 679 |
| MS.gene059315.t1 | MTR_2g088220 | 86.857 | 350 | 45 | 1 | 1 | 349 | 1 | 350 | 0.0 | 598 |
| MS.gene059315.t1 | MTR_2g088200 | 84.571 | 350 | 53 | 1 | 1 | 349 | 1 | 350 | 0.0 | 587 |
| MS.gene059315.t1 | MTR_8g010030 | 40.058 | 342 | 200 | 4 | 6 | 347 | 5 | 341 | 4.86e-81 | 251 |
| MS.gene059315.t1 | MTR_7g406860 | 39.359 | 343 | 203 | 4 | 5 | 347 | 6 | 343 | 7.06e-81 | 250 |
| MS.gene059315.t1 | MTR_8g009820 | 43.143 | 350 | 179 | 9 | 5 | 347 | 63 | 399 | 1.98e-77 | 243 |
| MS.gene059315.t1 | MTR_8g009980 | 41.040 | 346 | 193 | 7 | 5 | 347 | 4 | 341 | 2.70e-76 | 238 |
| MS.gene059315.t1 | MTR_8g010020 | 45.556 | 270 | 139 | 4 | 80 | 347 | 46 | 309 | 6.32e-74 | 231 |
| MS.gene059315.t1 | MTR_8g009830 | 41.092 | 348 | 188 | 10 | 5 | 347 | 4 | 339 | 7.08e-73 | 229 |
| MS.gene059315.t1 | MTR_8g009840 | 41.108 | 343 | 185 | 10 | 5 | 342 | 4 | 334 | 5.85e-70 | 228 |
| MS.gene059315.t1 | MTR_0011s0280 | 34.870 | 347 | 212 | 8 | 5 | 345 | 3 | 341 | 2.24e-65 | 210 |
| MS.gene059315.t1 | MTR_8g010000 | 37.176 | 347 | 180 | 8 | 5 | 347 | 4 | 316 | 2.37e-63 | 204 |
| MS.gene059315.t1 | MTR_4g082970 | 37.500 | 352 | 201 | 9 | 3 | 347 | 8 | 347 | 1.33e-62 | 203 |
| MS.gene059315.t1 | MTR_8g007325 | 41.593 | 226 | 114 | 8 | 5 | 223 | 4 | 218 | 2.47e-38 | 136 |
| MS.gene059315.t1 | MTR_5g095030 | 39.370 | 127 | 75 | 1 | 221 | 347 | 11 | 135 | 1.04e-25 | 100 |
| MS.gene059315.t1 | MTR_4g086410 | 31.048 | 248 | 155 | 6 | 106 | 347 | 385 | 622 | 4.34e-25 | 106 |
| MS.gene059315.t1 | MTR_4g086400 | 30.645 | 248 | 156 | 6 | 106 | 347 | 245 | 482 | 2.94e-24 | 103 |
| MS.gene059315.t1 | MTR_4g086400 | 30.645 | 248 | 156 | 6 | 106 | 347 | 385 | 622 | 4.74e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059315.t1 | AT5G16970 | 41.471 | 340 | 175 | 9 | 19 | 347 | 16 | 342 | 3.05e-77 | 241 |
| MS.gene059315.t1 | AT1G65560 | 40.974 | 349 | 194 | 7 | 4 | 347 | 6 | 347 | 8.77e-77 | 240 |
| MS.gene059315.t1 | AT3G03080 | 40.909 | 352 | 186 | 10 | 5 | 347 | 9 | 347 | 1.20e-73 | 232 |
| MS.gene059315.t1 | AT5G16990 | 40.597 | 335 | 184 | 8 | 19 | 347 | 15 | 340 | 1.23e-73 | 231 |
| MS.gene059315.t1 | AT1G26320 | 40.290 | 345 | 189 | 9 | 5 | 342 | 9 | 343 | 2.07e-72 | 229 |
| MS.gene059315.t1 | AT5G17000 | 41.088 | 331 | 173 | 8 | 26 | 347 | 25 | 342 | 4.90e-72 | 228 |
| MS.gene059315.t1 | AT5G37940 | 39.349 | 338 | 186 | 8 | 19 | 347 | 23 | 350 | 9.63e-71 | 224 |
| MS.gene059315.t1 | AT5G37980 | 39.877 | 326 | 180 | 7 | 31 | 347 | 32 | 350 | 5.45e-70 | 223 |
| MS.gene059315.t1 | AT5G16960 | 39.826 | 344 | 186 | 8 | 11 | 347 | 14 | 343 | 9.17e-70 | 222 |
| MS.gene059315.t1 | AT5G16960 | 39.826 | 344 | 186 | 8 | 11 | 347 | 14 | 343 | 9.17e-70 | 222 |
| MS.gene059315.t1 | AT5G38000 | 39.571 | 326 | 181 | 7 | 31 | 347 | 32 | 350 | 1.02e-69 | 222 |
| MS.gene059315.t1 | AT1G26320 | 39.710 | 345 | 186 | 10 | 5 | 342 | 9 | 338 | 5.78e-69 | 220 |
| MS.gene059315.t1 | AT1G65560 | 44.485 | 272 | 147 | 3 | 78 | 347 | 2 | 271 | 5.93e-68 | 215 |
| MS.gene059315.t1 | AT5G38000 | 39.490 | 314 | 174 | 7 | 31 | 335 | 32 | 338 | 7.20e-66 | 212 |
| MS.gene059315.t1 | AT3G59845 | 38.202 | 356 | 200 | 9 | 1 | 347 | 1 | 345 | 2.36e-64 | 208 |
| MS.gene059315.t1 | AT5G16980 | 45.413 | 218 | 117 | 1 | 130 | 347 | 21 | 236 | 5.60e-63 | 201 |
| MS.gene059315.t1 | AT5G16980 | 45.413 | 218 | 117 | 1 | 130 | 347 | 21 | 236 | 5.60e-63 | 201 |
| MS.gene059315.t1 | AT5G16980 | 45.413 | 218 | 117 | 1 | 130 | 347 | 87 | 302 | 2.77e-62 | 201 |
| MS.gene059315.t1 | AT5G38000 | 37.423 | 326 | 169 | 8 | 31 | 347 | 32 | 331 | 2.99e-59 | 194 |
| MS.gene059315.t1 | AT3G59845 | 43.612 | 227 | 126 | 1 | 121 | 347 | 19 | 243 | 7.01e-57 | 185 |
| MS.gene059315.t1 | AT5G17000 | 41.346 | 208 | 102 | 7 | 26 | 224 | 25 | 221 | 1.78e-36 | 132 |
| MS.gene059315.t1 | AT1G49670 | 30.242 | 248 | 157 | 6 | 106 | 347 | 381 | 618 | 2.59e-22 | 98.6 |
| MS.gene059315.t1 | AT1G49670 | 28.897 | 263 | 164 | 6 | 106 | 347 | 381 | 641 | 4.75e-19 | 89.0 |
| MS.gene059315.t1 | AT4G21580 | 29.344 | 259 | 166 | 10 | 94 | 346 | 44 | 291 | 1.97e-13 | 70.5 |
| MS.gene059315.t1 | AT4G21580 | 29.344 | 259 | 166 | 10 | 94 | 346 | 77 | 324 | 2.50e-13 | 70.5 |
Find 81 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATCTCGGTTCTTT+AGG | 0.209039 | 2.2:+11087125 | MS.gene059315:CDS |
| AAGCTCATCAAAGAGAATTT+TGG | 0.226510 | 2.2:+11088349 | MS.gene059315:CDS |
| GTTGATATTGTGGAATAAAA+AGG | 0.237797 | 2.2:-11086704 | None:intergenic |
| AAATCATATTTGCATCGTTT+TGG | 0.310312 | 2.2:+11089489 | MS.gene059315:CDS |
| AACACATTGGATCCTGGCTT+TGG | 0.311058 | 2.2:-11087605 | None:intergenic |
| CGAATTGGACATGGGAGATT+TGG | 0.315863 | 2.2:+11086491 | None:intergenic |
| GTGTTCATATCTGCTGCTTC+TGG | 0.322794 | 2.2:+11087623 | MS.gene059315:CDS |
| CTCACTGTATTTACTATCCT+TGG | 0.324250 | 2.2:-11087000 | None:intergenic |
| GTGATTGTTCCGCGAAGATA+TGG | 0.324490 | 2.2:-11086666 | None:intergenic |
| ATTTCTAATGCCTTCTCTTT+CGG | 0.329200 | 2.2:-11089418 | None:intergenic |
| TCAACGGCTAGATGGTCTTC+AGG | 0.338735 | 2.2:-11086621 | None:intergenic |
| GGTGAGGATGGAAGGCTATA+TGG | 0.372074 | 2.2:+11089464 | MS.gene059315:CDS |
| TCCACAATATCAACTTAATC+AGG | 0.375511 | 2.2:+11086713 | MS.gene059315:CDS |
| TCCGAGGTTGGAACACCTTC+AGG | 0.383872 | 2.2:-11086549 | None:intergenic |
| TTACAACATTTGCAGTTGTA+AGG | 0.385135 | 2.2:+11086967 | MS.gene059315:CDS |
| AAAAGTTGTTGTTCAAGTTA+AGG | 0.388021 | 2.2:+11089638 | MS.gene059315:CDS |
| ACACATTGGATCCTGGCTTT+GGG | 0.390179 | 2.2:-11087604 | None:intergenic |
| GATGATATCTCAATATAATA+AGG | 0.417882 | 2.2:+11089258 | MS.gene059315:CDS |
| GGTGGGAAAGGAGGTGAGGA+TGG | 0.424678 | 2.2:+11089452 | MS.gene059315:CDS |
| CCAAAGAGTAAAATCAATAT+CGG | 0.426147 | 2.2:+11089561 | MS.gene059315:CDS |
| CCTGGGTTCGCAGCATGGTT+AGG | 0.428468 | 2.2:+11087563 | MS.gene059315:CDS |
| TTTCTAATTATATGAAAAGA+AGG | 0.431114 | 2.2:-11087074 | None:intergenic |
| ACAATCACCGGCACCCTTGA+AGG | 0.439753 | 2.2:+11086681 | MS.gene059315:CDS |
| TAAATAATTTCAGGAGTACC+TGG | 0.440097 | 2.2:+11087545 | MS.gene059315:intron |
| GGAGAGTTTCAACGGCTAGA+TGG | 0.442497 | 2.2:-11086629 | None:intergenic |
| CGCAGCATGGTTAGGAATAG+AGG | 0.456840 | 2.2:+11087571 | MS.gene059315:CDS |
| TGTAGGGTCATTGGCAGCAC+TGG | 0.462075 | 2.2:+11087689 | MS.gene059315:CDS |
| AGGTAAACATCAATACCATC+AGG | 0.462166 | 2.2:-11089160 | None:intergenic |
| GGAAAGGAGGTGAGGATGGA+AGG | 0.464290 | 2.2:+11089456 | MS.gene059315:CDS |
| GATAGTGAAATCCCATTAGC+AGG | 0.467976 | 2.2:-11087104 | None:intergenic |
| TTGCTAAGATACGAGGATGT+AGG | 0.473300 | 2.2:+11087672 | MS.gene059315:CDS |
| ATGCTAGAATACCACTTTGT+GGG | 0.481843 | 2.2:+11089236 | MS.gene059315:CDS |
| CGAGACCATATCCATTCAAA+AGG | 0.487436 | 2.2:-11087031 | None:intergenic |
| ATACGAGGATGTAGGGTCAT+TGG | 0.487753 | 2.2:+11087680 | MS.gene059315:CDS |
| TCCGTTGATCCATATCTTCG+CGG | 0.487808 | 2.2:+11086657 | MS.gene059315:CDS |
| GTACTAGGAGACCCAAAGCC+AGG | 0.490910 | 2.2:+11087593 | MS.gene059315:CDS |
| CAACGGCTAGATGGTCTTCA+GGG | 0.493384 | 2.2:-11086620 | None:intergenic |
| TCTGCTGCTTCTGGTGCTGT+TGG | 0.500057 | 2.2:+11087632 | MS.gene059315:CDS |
| GGTGCTGTTGGTATGAATGC+TGG | 0.505825 | 2.2:+11087644 | MS.gene059315:CDS |
| TCCTGAAGGTGTTCCAACCT+CGG | 0.512018 | 2.2:+11086548 | MS.gene059315:CDS |
| TTCTAGCATTCTTGTTGACA+TGG | 0.514997 | 2.2:-11089222 | None:intergenic |
| GTCTTCAGGGATTGAATCAT+CGG | 0.517771 | 2.2:-11086607 | None:intergenic |
| TGGTTAGGAATAGAGGTACT+AGG | 0.520082 | 2.2:+11087578 | MS.gene059315:CDS |
| TGCTAAGATACGAGGATGTA+GGG | 0.520424 | 2.2:+11087673 | MS.gene059315:CDS |
| AGTTTAAGATGATCCGAGGT+TGG | 0.522459 | 2.2:-11086561 | None:intergenic |
| TCTTCTGAACATGGTGGGAA+AGG | 0.523236 | 2.2:+11089440 | MS.gene059315:CDS |
| AATGCTAGAATACCACTTTG+TGG | 0.527279 | 2.2:+11089235 | MS.gene059315:CDS |
| ATTTCACTATCAAATTATCT+CGG | 0.529600 | 2.2:+11087116 | MS.gene059315:CDS |
| TACAACATTTGCAGTTGTAA+GGG | 0.533855 | 2.2:+11086968 | MS.gene059315:CDS |
| GATATGAACACATTGGATCC+TGG | 0.535102 | 2.2:-11087611 | None:intergenic |
| CAGCACTGGCTCTGATGAGA+AGG | 0.546270 | 2.2:+11087703 | MS.gene059315:CDS |
| ATTTGGTAGAAAACAAAGAA+TGG | 0.556601 | 2.2:+11086508 | MS.gene059315:CDS |
| TATCTTCGCGGAACAATCAC+CGG | 0.558813 | 2.2:+11086669 | MS.gene059315:CDS |
| CATTAGAAATCTTCTGAACA+TGG | 0.559955 | 2.2:+11089431 | MS.gene059315:CDS |
| GATATGGATCAACGGAGAGA+AGG | 0.573244 | 2.2:-11086650 | None:intergenic |
| AGAAATCTTCTGAACATGGT+GGG | 0.577910 | 2.2:+11089435 | MS.gene059315:CDS |
| CCTAACCATGCTGCGAACCC+AGG | 0.583354 | 2.2:-11087563 | None:intergenic |
| ACCTGATTAAGTTGATATTG+TGG | 0.584585 | 2.2:-11086714 | None:intergenic |
| AGCAGCAGATATGAACACAT+TGG | 0.591491 | 2.2:-11087618 | None:intergenic |
| GAGTACCTGGGTTCGCAGCA+TGG | 0.592297 | 2.2:+11087558 | MS.gene059315:CDS |
| TGTAAGGGTAATTCGATCCA+AGG | 0.592533 | 2.2:+11086983 | MS.gene059315:CDS |
| AAATAATTTCAGGAGTACCT+GGG | 0.593770 | 2.2:+11087546 | MS.gene059315:intron |
| AAGGATAGTAAATACAGTGA+GGG | 0.594157 | 2.2:+11087002 | MS.gene059315:CDS |
| TCTGAACATGGTGGGAAAGG+AGG | 0.598581 | 2.2:+11089443 | MS.gene059315:CDS |
| AGGATAGTAAATACAGTGAG+GGG | 0.615694 | 2.2:+11087003 | MS.gene059315:CDS |
| GGAGAGAAGGAGAGTTTCAA+CGG | 0.616397 | 2.2:-11086637 | None:intergenic |
| GTTTACCTTGACAATGTTGG+TGG | 0.618276 | 2.2:+11089175 | MS.gene059315:CDS |
| GTAGCTGCATACTGTCCTGA+AGG | 0.620585 | 2.2:+11086534 | MS.gene059315:CDS |
| GATGTTTACCTTGACAATGT+TGG | 0.620700 | 2.2:+11089172 | MS.gene059315:CDS |
| TAGGTTTGGACCGAAAGAGA+AGG | 0.627714 | 2.2:+11089408 | MS.gene059315:intron |
| TGAGATATCATCCCACAAAG+TGG | 0.634211 | 2.2:-11089247 | None:intergenic |
| GGTAAACATCAATACCATCA+GGG | 0.638329 | 2.2:-11089159 | None:intergenic |
| TAGAAATCTTCTGAACATGG+TGG | 0.647455 | 2.2:+11089434 | MS.gene059315:CDS |
| GCGGAGTTTAAGATGATCCG+AGG | 0.648505 | 2.2:-11086565 | None:intergenic |
| CAAGGATAGTAAATACAGTG+AGG | 0.660082 | 2.2:+11087001 | MS.gene059315:CDS |
| TCCGCGAAGATATGGATCAA+CGG | 0.662990 | 2.2:-11086658 | None:intergenic |
| GGATAGTAAATACAGTGAGG+GGG | 0.664890 | 2.2:+11087004 | MS.gene059315:CDS |
| GAATTACGACTTGCTTAAAG+CGG | 0.671434 | 2.2:-11088416 | None:intergenic |
| ACATGGTGGGAAAGGAGGTG+AGG | 0.678852 | 2.2:+11089448 | MS.gene059315:CDS |
| GGTCAGCTTGCTAAGATACG+AGG | 0.707694 | 2.2:+11087665 | MS.gene059315:CDS |
| CAAGAGAAAGAGAAACAGTG+CGG | 0.754469 | 2.2:-11086584 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATTTGC+AGG | + | chr2.2:11086941-11086960 | MS.gene059315:intron | 10.0% |
| !! | TAAAATGAAATTTGTATTTA+AGG | + | chr2.2:11087468-11087487 | MS.gene059315:intron | 10.0% |
| !! | TATTATATAAAGAAAATAAG+TGG | - | chr2.2:11087742-11087761 | None:intergenic | 10.0% |
| !!! | AAATTTTTGAAGTATAAAAT+TGG | + | chr2.2:11088753-11088772 | MS.gene059315:intron | 10.0% |
| !!! | AATTAGAAAATTGAAATTTT+TGG | - | chr2.2:11089365-11089384 | None:intergenic | 10.0% |
| !!! | AATTTTTGAAGTATAAAATT+GGG | + | chr2.2:11088754-11088773 | MS.gene059315:intron | 10.0% |
| !!! | ATTAGAAAATTGAAATTTTT+GGG | - | chr2.2:11089364-11089383 | None:intergenic | 10.0% |
| !!! | CTTATTTTCTTTATATAATA+TGG | + | chr2.2:11087742-11087761 | MS.gene059315:intron | 10.0% |
| !!! | GTATAAAAAAATGAATTTTT+CGG | + | chr2.2:11088109-11088128 | MS.gene059315:intron | 10.0% |
| !!! | TTTTATTCAATTAGTTTAAA+AGG | + | chr2.2:11087231-11087250 | MS.gene059315:intron | 10.0% |
| !!! | TTTTTATGTGAAATTTTATA+GGG | - | chr2.2:11089032-11089051 | None:intergenic | 10.0% |
| !! | AAAAAAATACTCATATTTGA+TGG | + | chr2.2:11087423-11087442 | MS.gene059315:intron | 15.0% |
| !! | TTAGTAAATTGTTATAATGT+TGG | + | chr2.2:11089383-11089402 | MS.gene059315:intron | 15.0% |
| !! | TTTCTAATTATATGAAAAGA+AGG | - | chr2.2:11087077-11087096 | None:intergenic | 15.0% |
| !!! | ACATTTATTTGTTAGAATTA+GGG | + | chr2.2:11086737-11086756 | MS.gene059315:intron | 15.0% |
| !!! | ATTTCTAAAAAAAAATTGGT+GGG | + | chr2.2:11088523-11088542 | MS.gene059315:intron | 15.0% |
| !!! | ATTTTTGAAGTATAAAATTG+GGG | + | chr2.2:11088755-11088774 | MS.gene059315:intron | 15.0% |
| !!! | CTTTTTATGTGAAATTTTAT+AGG | - | chr2.2:11089033-11089052 | None:intergenic | 15.0% |
| !!! | TACATTTATTTGTTAGAATT+AGG | + | chr2.2:11086736-11086755 | MS.gene059315:intron | 15.0% |
| !!! | TCATTTAACGTTTTTTAAAT+CGG | - | chr2.2:11088609-11088628 | None:intergenic | 15.0% |
| !! | AAAAAGATAGCTAATACATT+TGG | - | chr2.2:11088012-11088031 | None:intergenic | 20.0% |
| !! | AAGAATACATAAAGAGAAAA+AGG | - | chr2.2:11088444-11088463 | None:intergenic | 20.0% |
| !! | AATTGTTATAATGTTGGTAT+AGG | + | chr2.2:11089389-11089408 | MS.gene059315:intron | 20.0% |
| !! | ATTTCACTATCAAATTATCT+CGG | + | chr2.2:11087116-11087135 | MS.gene059315:CDS | 20.0% |
| !! | CTAAAGAAATGATAAAAACT+TGG | - | chr2.2:11087818-11087837 | None:intergenic | 20.0% |
| !! | GATGATATCTCAATATAATA+AGG | + | chr2.2:11089258-11089277 | MS.gene059315:CDS | 20.0% |
| !! | TTACAAAACAAAATTTCATG+AGG | - | chr2.2:11087785-11087804 | None:intergenic | 20.0% |
| !! | TTATTTATTTCGATGCTAAT+AGG | - | chr2.2:11087899-11087918 | None:intergenic | 20.0% |
| !! | TTGATTTATAAAGTTCTTTC+CGG | - | chr2.2:11088581-11088600 | None:intergenic | 20.0% |
| !! | TTGCAATTTATCTGTATTTA+TGG | + | chr2.2:11088958-11088977 | MS.gene059315:intron | 20.0% |
| !!! | CACCAATTTTTTTTTAGAAA+TGG | - | chr2.2:11088524-11088543 | None:intergenic | 20.0% |
| !!! | CATTTCTAAAAAAAAATTGG+TGG | + | chr2.2:11088522-11088541 | MS.gene059315:intron | 20.0% |
| !!! | CTCCATTTCTAAAAAAAAAT+TGG | + | chr2.2:11088519-11088538 | MS.gene059315:intron | 20.0% |
| !!! | TTAAGTTTTTGTTTTGTGTT+CGG | + | chr2.2:11088045-11088064 | MS.gene059315:intron | 20.0% |
| !!! | TTTCTAAAAAAAAATTGGTG+GGG | + | chr2.2:11088524-11088543 | MS.gene059315:intron | 20.0% |
| !!! | TTTTGTGATTAAAATAGAGA+GGG | - | chr2.2:11087989-11088008 | None:intergenic | 20.0% |
| ! | AACTATCATTCACTTCAAAA+TGG | - | chr2.2:11088642-11088661 | None:intergenic | 25.0% |
| ! | ATACTTTGTAGTATTAACGT+GGG | + | chr2.2:11087387-11087406 | MS.gene059315:intron | 25.0% |
| ! | ATCCGATCGAAATATAATAT+TGG | - | chr2.2:11088239-11088258 | None:intergenic | 25.0% |
| ! | ATTTGGTAGAAAACAAAGAA+TGG | + | chr2.2:11086508-11086527 | MS.gene059315:CDS | 25.0% |
| ! | CAATATAATAAGGTGAATGA+GGG | + | chr2.2:11089268-11089287 | MS.gene059315:intron | 25.0% |
| ! | CCAAAGAGTAAAATCAATAT+CGG | + | chr2.2:11089561-11089580 | MS.gene059315:CDS | 25.0% |
| ! | GTTGATATTGTGGAATAAAA+AGG | - | chr2.2:11086707-11086726 | None:intergenic | 25.0% |
| ! | TAAATAAGTACCTCTCATTA+TGG | + | chr2.2:11087912-11087931 | MS.gene059315:intron | 25.0% |
| ! | TATAAGAATATCCACAACAA+TGG | + | chr2.2:11087862-11087881 | MS.gene059315:intron | 25.0% |
| ! | TATTATATTTCGATCGGATT+TGG | + | chr2.2:11088240-11088259 | MS.gene059315:intron | 25.0% |
| ! | TCAATATAATAAGGTGAATG+AGG | + | chr2.2:11089267-11089286 | MS.gene059315:intron | 25.0% |
| ! | TGCCAATATTATATTTCGAT+CGG | + | chr2.2:11088234-11088253 | MS.gene059315:intron | 25.0% |
| ! | TTATAATGTTGGTATAGGTT+TGG | + | chr2.2:11089394-11089413 | MS.gene059315:intron | 25.0% |
| ! | TTTGCATGGATAATTATCTT+TGG | + | chr2.2:11088147-11088166 | MS.gene059315:intron | 25.0% |
| !! | AAAAGTTGTTGTTCAAGTTA+AGG | + | chr2.2:11089638-11089657 | MS.gene059315:CDS | 25.0% |
| !! | AAATCATATTTGCATCGTTT+TGG | + | chr2.2:11089489-11089508 | MS.gene059315:CDS | 25.0% |
| !! | GTTTTGTGATTAAAATAGAG+AGG | - | chr2.2:11087990-11088009 | None:intergenic | 25.0% |
| !! | TATTTTCACTAGAATTTTGC+AGG | + | chr2.2:11089131-11089150 | MS.gene059315:intron | 25.0% |
| !! | TTGCAATTTGTTTGCATTTA+GGG | - | chr2.2:11088828-11088847 | None:intergenic | 25.0% |
| !! | TTTGCAATTTGTTTGCATTT+AGG | - | chr2.2:11088829-11088848 | None:intergenic | 25.0% |
| !!! | GTTAATAAGTCGATTTTGTA+AGG | - | chr2.2:11086779-11086798 | None:intergenic | 25.0% |
| !!! | TCGTATACATATTTTTTGCA+TGG | + | chr2.2:11088133-11088152 | MS.gene059315:intron | 25.0% |
| !!! | TTGAAATTTTTGGGCATTTT+TGG | - | chr2.2:11089355-11089374 | None:intergenic | 25.0% |
| AACTATGGTCATTTACTCAA+TGG | - | chr2.2:11088670-11088689 | None:intergenic | 30.0% | |
| AAGGATAGTAAATACAGTGA+GGG | + | chr2.2:11087002-11087021 | MS.gene059315:CDS | 30.0% | |
| AGAAAAATTGATCCTGCTAA+TGG | + | chr2.2:11087092-11087111 | MS.gene059315:CDS | 30.0% | |
| ATGGAAAAATACTTGCAAGA+AGG | + | chr2.2:11089528-11089547 | MS.gene059315:CDS | 30.0% | |
| ATTTCTAATGCCTTCTCTTT+CGG | - | chr2.2:11089421-11089440 | None:intergenic | 30.0% | |
| CATTAGAAATCTTCTGAACA+TGG | + | chr2.2:11089431-11089450 | MS.gene059315:CDS | 30.0% | |
| CATTATGGAGAGAAAACATT+TGG | + | chr2.2:11087927-11087946 | MS.gene059315:intron | 30.0% | |
| GAAAAATTGATCCTGCTAAT+GGG | + | chr2.2:11087093-11087112 | MS.gene059315:CDS | 30.0% | |
| GATACTTTGTAGTATTAACG+TGG | + | chr2.2:11087386-11087405 | MS.gene059315:intron | 30.0% | |
| TAAAAAAAAATTGGTGGGGT+GGG | + | chr2.2:11088528-11088547 | MS.gene059315:intron | 30.0% | |
| TACAACATTTGCAGTTGTAA+GGG | + | chr2.2:11086968-11086987 | MS.gene059315:CDS | 30.0% | |
| TCAAATTATCTCGGTTCTTT+AGG | + | chr2.2:11087125-11087144 | MS.gene059315:CDS | 30.0% | |
| TCCACAATATCAACTTAATC+AGG | + | chr2.2:11086713-11086732 | MS.gene059315:CDS | 30.0% | |
| TTACAACATTTGCAGTTGTA+AGG | + | chr2.2:11086967-11086986 | MS.gene059315:CDS | 30.0% | |
| ! | AAGCTCATCAAAGAGAATTT+TGG | + | chr2.2:11088349-11088368 | MS.gene059315:CDS | 30.0% |
| ! | GAGAATTTTGGATATGATGA+TGG | + | chr2.2:11088361-11088380 | MS.gene059315:CDS | 30.0% |
| ! | GATATCCTTTTGAATGGATA+TGG | + | chr2.2:11087026-11087045 | MS.gene059315:CDS | 30.0% |
| ! | GTTGTTTAAGATTGCTCTTT+AGG | - | chr2.2:11088715-11088734 | None:intergenic | 30.0% |
| ! | TATCGGAATTGAGAACTTTT+TGG | + | chr2.2:11089578-11089597 | MS.gene059315:CDS | 30.0% |
| ! | TGGAGATTTTGTCAAAGATA+TGG | + | chr2.2:11089509-11089528 | MS.gene059315:CDS | 30.0% |
| !! | AAATAATTTCAGGAGTACCT+GGG | + | chr2.2:11087546-11087565 | MS.gene059315:intron | 30.0% |
| !! | ACCTGATTAAGTTGATATTG+TGG | - | chr2.2:11086717-11086736 | None:intergenic | 30.0% |
| !! | TAAATAATTTCAGGAGTACC+TGG | + | chr2.2:11087545-11087564 | MS.gene059315:intron | 30.0% |
| !!! | CCGATATTGATTTTACTCTT+TGG | - | chr2.2:11089564-11089583 | None:intergenic | 30.0% |
| !!! | GTTTTCTCTAGTTCTAACAT+TGG | + | chr2.2:11089615-11089634 | MS.gene059315:CDS | 30.0% |
| AAAAAAAAATTGGTGGGGTG+GGG | + | chr2.2:11088529-11088548 | MS.gene059315:intron | 35.0% | |
| AAGAATATCCACAACAATGG+TGG | + | chr2.2:11087865-11087884 | MS.gene059315:intron | 35.0% | |
| AATGCTAGAATACCACTTTG+TGG | + | chr2.2:11089235-11089254 | MS.gene059315:CDS | 35.0% | |
| ACTAACAGAGTCTACATTCA+GGG | + | chr2.2:11088929-11088948 | MS.gene059315:intron | 35.0% | |
| AGAAATCTTCTGAACATGGT+GGG | + | chr2.2:11089435-11089454 | MS.gene059315:CDS | 35.0% | |
| AGAATATCCACAACAATGGT+GGG | + | chr2.2:11087866-11087885 | MS.gene059315:intron | 35.0% | |
| AGACTCTGTTGATCAATTTC+AGG | + | chr2.2:11088864-11088883 | MS.gene059315:intron | 35.0% | |
| AGGATAGTAAATACAGTGAG+GGG | + | chr2.2:11087003-11087022 | MS.gene059315:CDS | 35.0% | |
| AGGTAAACATCAATACCATC+AGG | - | chr2.2:11089163-11089182 | None:intergenic | 35.0% | |
| ATCAACAGAGTCTACATTCA+TGG | - | chr2.2:11088857-11088876 | None:intergenic | 35.0% | |
| ATGCTAGAATACCACTTTGT+GGG | + | chr2.2:11089236-11089255 | MS.gene059315:CDS | 35.0% | |
| CAAGGATAGTAAATACAGTG+AGG | + | chr2.2:11087001-11087020 | MS.gene059315:CDS | 35.0% | |
| CAATTGCACACAAACAACTA+TGG | - | chr2.2:11088685-11088704 | None:intergenic | 35.0% | |
| CTAAAAAAAAATTGGTGGGG+TGG | + | chr2.2:11088527-11088546 | MS.gene059315:intron | 35.0% | |
| CTCACTGTATTTACTATCCT+TGG | - | chr2.2:11087003-11087022 | None:intergenic | 35.0% | |
| CTTACAACTTGAAACATACC+TGG | + | chr2.2:11088311-11088330 | MS.gene059315:intron | 35.0% | |
| GACTCTGTTGATCAATTTCA+GGG | + | chr2.2:11088865-11088884 | MS.gene059315:intron | 35.0% | |
| GATGTTTACCTTGACAATGT+TGG | + | chr2.2:11089172-11089191 | MS.gene059315:CDS | 35.0% | |
| GGTAAACATCAATACCATCA+GGG | - | chr2.2:11089162-11089181 | None:intergenic | 35.0% | |
| TAGAAATCTTCTGAACATGG+TGG | + | chr2.2:11089434-11089453 | MS.gene059315:CDS | 35.0% | |
| TAGTTCATCCAAATTGACAC+CGG | + | chr2.2:11088559-11088578 | MS.gene059315:intron | 35.0% | |
| TGGAATAAAAAGGCCTTCAA+GGG | - | chr2.2:11086697-11086716 | None:intergenic | 35.0% | |
| TTCTAGCATTCTTGTTGACA+TGG | - | chr2.2:11089225-11089244 | None:intergenic | 35.0% | |
| ! | GAATTACGACTTGCTTAAAG+CGG | - | chr2.2:11088419-11088438 | None:intergenic | 35.0% |
| ! | TGTTTTCTCTCCATAATGAG+AGG | - | chr2.2:11087925-11087944 | None:intergenic | 35.0% |
| ! | TTTTACCACCAACATTGTCA+AGG | - | chr2.2:11089183-11089202 | None:intergenic | 35.0% |
| AAAAAAAATTGGTGGGGTGG+GGG | + | chr2.2:11088530-11088549 | MS.gene059315:intron | 40.0% | |
| ACTAAAGGGGTCTACATTCA+GGG | + | chr2.2:11088897-11088916 | MS.gene059315:intron | 40.0% | |
| AGCAGCAGATATGAACACAT+TGG | - | chr2.2:11087621-11087640 | None:intergenic | 40.0% | |
| AGGGACTAAAGTGACTAAAG+GGG | + | chr2.2:11088884-11088903 | MS.gene059315:intron | 40.0% | |
| CAACTTGAAACATACCTGGT+TGG | + | chr2.2:11088315-11088334 | MS.gene059315:intron | 40.0% | |
| CAAGAGAAAGAGAAACAGTG+CGG | - | chr2.2:11086587-11086606 | None:intergenic | 40.0% | |
| CAGGGACTAAAGTGACTAAA+GGG | + | chr2.2:11088883-11088902 | MS.gene059315:intron | 40.0% | |
| CGAGACCATATCCATTCAAA+AGG | - | chr2.2:11087034-11087053 | None:intergenic | 40.0% | |
| GACGACTCATTTCCTATTCA+GGG | + | chr2.2:11088989-11089008 | MS.gene059315:intron | 40.0% | |
| GACTAACAGAGTCTACATTC+AGG | + | chr2.2:11088928-11088947 | MS.gene059315:intron | 40.0% | |
| GACTACTCATTTCCCATTCA+GGG | - | chr2.2:11088797-11088816 | None:intergenic | 40.0% | |
| GATAGTGAAATCCCATTAGC+AGG | - | chr2.2:11087107-11087126 | None:intergenic | 40.0% | |
| GATATGAACACATTGGATCC+TGG | - | chr2.2:11087614-11087633 | None:intergenic | 40.0% | |
| GGATAGTAAATACAGTGAGG+GGG | + | chr2.2:11087004-11087023 | MS.gene059315:CDS | 40.0% | |
| GTCTTCAGGGATTGAATCAT+CGG | - | chr2.2:11086610-11086629 | None:intergenic | 40.0% | |
| GTGGAATAAAAAGGCCTTCA+AGG | - | chr2.2:11086698-11086717 | None:intergenic | 40.0% | |
| GTTGTTTGTGTGCAATTGCT+AGG | + | chr2.2:11088687-11088706 | MS.gene059315:intron | 40.0% | |
| GTTTACCTTGACAATGTTGG+TGG | + | chr2.2:11089175-11089194 | MS.gene059315:CDS | 40.0% | |
| TCAGGGACTAAAGTGACTAA+AGG | + | chr2.2:11088882-11088901 | MS.gene059315:intron | 40.0% | |
| TGACGACTCATTTCCTATTC+AGG | + | chr2.2:11088988-11089007 | MS.gene059315:intron | 40.0% | |
| TGACTACTCATTTCCCATTC+AGG | - | chr2.2:11088798-11088817 | None:intergenic | 40.0% | |
| TGAGATATCATCCCACAAAG+TGG | - | chr2.2:11089250-11089269 | None:intergenic | 40.0% | |
| TGCTAAGATACGAGGATGTA+GGG | + | chr2.2:11087673-11087692 | MS.gene059315:CDS | 40.0% | |
| TGTAAGGGTAATTCGATCCA+AGG | + | chr2.2:11086983-11087002 | MS.gene059315:CDS | 40.0% | |
| TTGCTAAGATACGAGGATGT+AGG | + | chr2.2:11087672-11087691 | MS.gene059315:CDS | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+AGG | - | chr2.2:11088801-11088782 | None:intergenic | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr2.2:11088782-11088801 | MS.gene059315:intron | 40.0% |
| ! | AGTTCTTTCCGGTGTCAATT+TGG | - | chr2.2:11088570-11088589 | None:intergenic | 40.0% |
| ! | AGTTTAAGATGATCCGAGGT+TGG | - | chr2.2:11086564-11086583 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr2.2:11088781-11088800 | MS.gene059315:intron | 40.0% |
| ! | TTTTGCAGGTATTTCCCTGA+TGG | + | chr2.2:11089145-11089164 | MS.gene059315:intron | 40.0% |
| !! | ACATACCTGGTTGGTTTATC+AGG | + | chr2.2:11088324-11088343 | MS.gene059315:intron | 40.0% |
| !! | TGGTTAGGAATAGAGGTACT+AGG | + | chr2.2:11087578-11087597 | MS.gene059315:CDS | 40.0% |
| AACACATTGGATCCTGGCTT+TGG | - | chr2.2:11087608-11087627 | None:intergenic | 45.0% | |
| ATACGAGGATGTAGGGTCAT+TGG | + | chr2.2:11087680-11087699 | MS.gene059315:CDS | 45.0% | |
| CTTCACCTGATAAACCAACC+AGG | - | chr2.2:11088332-11088351 | None:intergenic | 45.0% | |
| GACTAAAGGGGTCTACATTC+AGG | + | chr2.2:11088896-11088915 | MS.gene059315:intron | 45.0% | |
| GATATGGATCAACGGAGAGA+AGG | - | chr2.2:11086653-11086672 | None:intergenic | 45.0% | |
| GGAGAGAAGGAGAGTTTCAA+CGG | - | chr2.2:11086640-11086659 | None:intergenic | 45.0% | |
| GTGATTGTTCCGCGAAGATA+TGG | - | chr2.2:11086669-11086688 | None:intergenic | 45.0% | |
| TAGGTTTGGACCGAAAGAGA+AGG | + | chr2.2:11089408-11089427 | MS.gene059315:intron | 45.0% | |
| TATCTTCGCGGAACAATCAC+CGG | + | chr2.2:11086669-11086688 | MS.gene059315:CDS | 45.0% | |
| TCCGCGAAGATATGGATCAA+CGG | - | chr2.2:11086661-11086680 | None:intergenic | 45.0% | |
| TCCGTTGATCCATATCTTCG+CGG | + | chr2.2:11086657-11086676 | MS.gene059315:CDS | 45.0% | |
| ! | ACACATTGGATCCTGGCTTT+GGG | - | chr2.2:11087607-11087626 | None:intergenic | 45.0% |
| ! | GAGGGGGATATCCTTTTGAA+TGG | + | chr2.2:11087020-11087039 | MS.gene059315:CDS | 45.0% |
| ! | GTGTTCATATCTGCTGCTTC+TGG | + | chr2.2:11087623-11087642 | MS.gene059315:CDS | 45.0% |
| ! | TCTTCTGAACATGGTGGGAA+AGG | + | chr2.2:11089440-11089459 | MS.gene059315:CDS | 45.0% |
| !! | AATATTAATTAAATAATTTC+AGG | + | chr2.2:11087536-11087555 | MS.gene059315:intron | 5.0% |
| !!! | ATAATTTTTATCAATAAAAT+CGG | - | chr2.2:11087159-11087178 | None:intergenic | 5.0% |
| !!! | TAAATTATTTGTTTTTATTT+GGG | - | chr2.2:11087450-11087469 | None:intergenic | 5.0% |
| !!! | TAATATTTTCAAATTATTTA+CGG | + | chr2.2:11088268-11088287 | MS.gene059315:intron | 5.0% |
| !!! | TATTTTTTTTTAATAAAAAG+TGG | + | chr2.2:11086845-11086864 | MS.gene059315:intron | 5.0% |
| !!! | TTAAATTATTTGTTTTTATT+TGG | - | chr2.2:11087451-11087470 | None:intergenic | 5.0% |
| !!! | TTTTATTCAATTATTTTAAA+AGG | + | chr2.2:11087194-11087213 | MS.gene059315:intron | 5.0% |
| CAACGGCTAGATGGTCTTCA+GGG | - | chr2.2:11086623-11086642 | None:intergenic | 50.0% | |
| CGCAGCATGGTTAGGAATAG+AGG | + | chr2.2:11087571-11087590 | MS.gene059315:CDS | 50.0% | |
| GGAGAGTTTCAACGGCTAGA+TGG | - | chr2.2:11086632-11086651 | None:intergenic | 50.0% | |
| GGTGAGGATGGAAGGCTATA+TGG | + | chr2.2:11089464-11089483 | MS.gene059315:CDS | 50.0% | |
| GTAGCTGCATACTGTCCTGA+AGG | + | chr2.2:11086534-11086553 | MS.gene059315:CDS | 50.0% | |
| TCAACGGCTAGATGGTCTTC+AGG | - | chr2.2:11086624-11086643 | None:intergenic | 50.0% | |
| ! | AAAAAGGCCTTCAAGGGTGC+CGG | - | chr2.2:11086691-11086710 | None:intergenic | 50.0% |
| ! | GCGGAGTTTAAGATGATCCG+AGG | - | chr2.2:11086568-11086587 | None:intergenic | 50.0% |
| ! | TCTGAACATGGTGGGAAAGG+AGG | + | chr2.2:11089443-11089462 | MS.gene059315:CDS | 50.0% |
| ! | TGAAGCACCCACCATTGTTG+TGG | - | chr2.2:11087876-11087895 | None:intergenic | 50.0% |
| !! | GGTCAGCTTGCTAAGATACG+AGG | + | chr2.2:11087665-11087684 | MS.gene059315:CDS | 50.0% |
| !! | GGTGCTGTTGGTATGAATGC+TGG | + | chr2.2:11087644-11087663 | MS.gene059315:CDS | 50.0% |
| !! | TCCTGAAGGTGTTCCAACCT+CGG | + | chr2.2:11086548-11086567 | MS.gene059315:CDS | 50.0% |
| AAAAATTGGTGGGGTGGGGG+TGG | + | chr2.2:11088533-11088552 | MS.gene059315:intron | 55.0% | |
| AAAATTGGTGGGGTGGGGGT+GGG | + | chr2.2:11088534-11088553 | MS.gene059315:intron | 55.0% | |
| ACAATCACCGGCACCCTTGA+AGG | + | chr2.2:11086681-11086700 | MS.gene059315:CDS | 55.0% | |
| GGAAAGGAGGTGAGGATGGA+AGG | + | chr2.2:11089456-11089475 | MS.gene059315:CDS | 55.0% | |
| GTACTAGGAGACCCAAAGCC+AGG | + | chr2.2:11087593-11087612 | MS.gene059315:CDS | 55.0% | |
| TCCGAGGTTGGAACACCTTC+AGG | - | chr2.2:11086552-11086571 | None:intergenic | 55.0% | |
| TGTAGGGTCATTGGCAGCAC+TGG | + | chr2.2:11087689-11087708 | MS.gene059315:CDS | 55.0% | |
| ! | ACATGGTGGGAAAGGAGGTG+AGG | + | chr2.2:11089448-11089467 | MS.gene059315:CDS | 55.0% |
| !! | CAGCACTGGCTCTGATGAGA+AGG | + | chr2.2:11087703-11087722 | MS.gene059315:CDS | 55.0% |
| !! | TCTGCTGCTTCTGGTGCTGT+TGG | + | chr2.2:11087632-11087651 | MS.gene059315:CDS | 55.0% |
| AAATTGGTGGGGTGGGGGTG+GGG | + | chr2.2:11088535-11088554 | MS.gene059315:intron | 60.0% | |
| CCTAACCATGCTGCGAACCC+AGG | - | chr2.2:11087566-11087585 | None:intergenic | 60.0% | |
| CCTGGGTTCGCAGCATGGTT+AGG | + | chr2.2:11087563-11087582 | MS.gene059315:CDS | 60.0% | |
| GAGTACCTGGGTTCGCAGCA+TGG | + | chr2.2:11087558-11087577 | MS.gene059315:CDS | 60.0% | |
| GGTGGGAAAGGAGGTGAGGA+TGG | + | chr2.2:11089452-11089471 | MS.gene059315:CDS | 60.0% | |
| AATTGGTGGGGTGGGGGTGG+GGG | + | chr2.2:11088536-11088555 | MS.gene059315:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 11086501 | 11089665 | 11086501 | ID=MS.gene059315 |
| chr2.2 | mRNA | 11086501 | 11089665 | 11086501 | ID=MS.gene059315.t1;Parent=MS.gene059315 |
| chr2.2 | exon | 11086501 | 11086734 | 11086501 | ID=MS.gene059315.t1.exon1;Parent=MS.gene059315.t1 |
| chr2.2 | CDS | 11086501 | 11086734 | 11086501 | ID=cds.MS.gene059315.t1;Parent=MS.gene059315.t1 |
| chr2.2 | exon | 11086963 | 11087146 | 11086963 | ID=MS.gene059315.t1.exon2;Parent=MS.gene059315.t1 |
| chr2.2 | CDS | 11086963 | 11087146 | 11086963 | ID=cds.MS.gene059315.t1;Parent=MS.gene059315.t1 |
| chr2.2 | exon | 11087558 | 11087724 | 11087558 | ID=MS.gene059315.t1.exon3;Parent=MS.gene059315.t1 |
| chr2.2 | CDS | 11087558 | 11087724 | 11087558 | ID=cds.MS.gene059315.t1;Parent=MS.gene059315.t1 |
| chr2.2 | exon | 11088346 | 11088428 | 11088346 | ID=MS.gene059315.t1.exon4;Parent=MS.gene059315.t1 |
| chr2.2 | CDS | 11088346 | 11088428 | 11088346 | ID=cds.MS.gene059315.t1;Parent=MS.gene059315.t1 |
| chr2.2 | exon | 11089153 | 11089279 | 11089153 | ID=MS.gene059315.t1.exon5;Parent=MS.gene059315.t1 |
| chr2.2 | CDS | 11089153 | 11089279 | 11089153 | ID=cds.MS.gene059315.t1;Parent=MS.gene059315.t1 |
| chr2.2 | exon | 11089411 | 11089665 | 11089411 | ID=MS.gene059315.t1.exon6;Parent=MS.gene059315.t1 |
| chr2.2 | CDS | 11089411 | 11089665 | 11089411 | ID=cds.MS.gene059315.t1;Parent=MS.gene059315.t1 |
| Gene Sequence |
| Protein sequence |
