AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000399.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000399.01.T01 MTR_1g016620 97.384 344 9 0 1 344 1 344 0.0 704
MsG0180000399.01.T01 MTR_7g080170 46.386 332 149 4 33 335 60 391 2.10e-97 298
MsG0180000399.01.T01 MTR_4g037470 46.965 313 152 3 33 331 61 373 6.91e-97 295
MsG0180000399.01.T01 MTR_7g070510 45.955 309 154 3 37 332 60 368 4.39e-96 292
MsG0180000399.01.T01 MTR_7g021530 47.799 318 142 6 33 328 52 367 1.29e-94 287
MsG0180000399.01.T01 MTR_2g090190 47.756 312 150 3 33 331 55 366 1.52e-94 289
MsG0180000399.01.T01 MTR_4g037470 45.652 322 152 4 33 331 61 382 5.23e-94 288
MsG0180000399.01.T01 MTR_7g021530 47.799 318 142 6 33 328 93 408 5.85e-94 287
MsG0180000399.01.T01 MTR_8g017240 48.829 299 143 5 33 329 50 340 1.61e-89 273
MsG0180000399.01.T01 MTR_7g021530 48.288 292 127 6 59 328 28 317 5.96e-87 266
MsG0180000399.01.T01 MTR_4g013295 45.574 305 156 5 40 336 49 351 1.02e-86 265
MsG0180000399.01.T01 MTR_1g083690 43.771 297 165 2 35 329 55 351 4.19e-85 261
MsG0180000399.01.T01 MTR_4g120410 40.741 324 182 6 21 337 41 361 4.40e-82 254
MsG0180000399.01.T01 MTR_7g080170 57.346 211 89 1 126 335 73 283 4.71e-82 254
MsG0180000399.01.T01 MTR_2g435550 41.562 320 179 5 21 334 28 345 5.46e-82 253
MsG0180000399.01.T01 MTR_2g435550 41.562 320 179 5 21 334 42 359 5.89e-82 253
MsG0180000399.01.T01 MTR_7g112490 42.020 307 159 5 38 329 60 362 2.43e-81 252
MsG0180000399.01.T01 MTR_7g112490 42.020 307 159 5 38 329 78 380 2.88e-81 253
MsG0180000399.01.T01 MTR_2g435550 41.234 308 173 5 8 309 29 334 3.26e-76 239
MsG0180000399.01.T01 MTR_7g021530 47.037 270 120 5 33 280 52 320 9.15e-76 236
MsG0180000399.01.T01 MTR_7g021530 47.037 270 120 5 33 280 93 361 2.62e-75 236
MsG0180000399.01.T01 MTR_7g021530 40.741 189 89 5 33 199 52 239 3.70e-35 129
MsG0180000399.01.T01 MTR_7g021530 40.741 189 89 5 33 199 93 280 1.11e-34 129
MsG0180000399.01.T01 MTR_4g118340 27.645 293 169 7 51 324 68 336 3.48e-32 124
MsG0180000399.01.T01 MTR_6g087000 29.193 322 181 9 42 340 97 394 3.22e-31 125
MsG0180000399.01.T01 MTR_6g087000 29.193 322 181 9 42 340 97 394 4.43e-31 124
MsG0180000399.01.T01 MTR_2g020970 28.364 275 155 5 68 324 87 337 5.60e-27 109
MsG0180000399.01.T01 MTR_2g020970 28.364 275 155 5 68 324 87 337 1.50e-26 109
MsG0180000399.01.T01 MTR_3g105730 34.956 226 116 8 114 331 82 284 1.66e-26 107
MsG0180000399.01.T01 MTR_3g105730 31.818 264 132 8 70 331 45 262 1.80e-26 106
MsG0180000399.01.T01 MTR_1g014640 32.766 235 118 6 70 303 110 305 3.90e-25 104
MsG0180000399.01.T01 MTR_1g013400 32.766 235 118 6 70 303 110 305 3.90e-25 104
MsG0180000399.01.T01 MTR_4g125810 33.047 233 125 8 57 287 242 445 1.08e-22 99.4
MsG0180000399.01.T01 MTR_5g009370 33.921 227 109 8 68 288 87 278 1.39e-22 97.1
MsG0180000399.01.T01 MTR_3g104710 32.231 242 135 8 49 287 269 484 1.64e-21 95.9
MsG0180000399.01.T01 MTR_5g080680 31.439 264 130 9 41 290 104 330 8.33e-21 92.8
MsG0180000399.01.T01 MTR_6g081850 30.769 247 114 6 67 294 78 286 6.36e-20 89.4
MsG0180000399.01.T01 MTR_1g115570 29.832 238 123 8 67 303 125 319 1.25e-19 89.0
MsG0180000399.01.T01 MTR_3g068200 32.203 236 112 10 68 290 123 323 1.39e-19 89.4
MsG0180000399.01.T01 MTR_4g094542 28.839 267 147 9 39 303 121 346 2.03e-19 88.6
MsG0180000399.01.T01 MTR_1g086350 30.736 231 122 9 64 288 114 312 8.99e-19 87.0
MsG0180000399.01.T01 MTR_1g086350 30.736 231 122 9 64 288 98 296 9.44e-19 86.7
MsG0180000399.01.T01 MTR_1g028300 30.081 246 134 7 46 288 120 330 1.72e-18 85.9
MsG0180000399.01.T01 MTR_8g102550 31.818 220 119 7 68 287 152 340 2.09e-18 85.9
MsG0180000399.01.T01 MTR_3g105880 28.929 280 145 10 43 288 28 287 2.27e-18 85.5
MsG0180000399.01.T01 MTR_2g040500 30.342 234 121 6 68 283 267 476 2.37e-18 86.3
MsG0180000399.01.T01 MTR_3g105880 28.929 280 145 10 43 288 28 287 2.47e-18 84.7
MsG0180000399.01.T01 MTR_3g107880 28.986 276 147 10 67 335 62 295 4.28e-18 84.3
MsG0180000399.01.T01 MTR_3g107880 28.986 276 147 10 67 335 119 352 6.28e-18 84.3
MsG0180000399.01.T01 MTR_3g107880 28.986 276 147 10 67 335 120 353 7.03e-18 84.3
MsG0180000399.01.T01 MTR_5g024340 29.515 227 114 9 67 288 123 308 1.13e-17 83.6
MsG0180000399.01.T01 MTR_1g015110 31.250 224 125 8 68 287 290 488 1.49e-17 84.0
MsG0180000399.01.T01 MTR_1g014190 28.571 280 146 10 43 288 28 287 7.53e-17 80.9
MsG0180000399.01.T01 MTR_4g123080 25.847 236 134 8 60 288 88 289 8.77e-17 80.9
MsG0180000399.01.T01 MTR_4g123080 25.847 236 134 8 60 288 106 307 8.86e-17 80.9
MsG0180000399.01.T01 MTR_5g063940 30.657 274 143 12 55 327 7 234 9.50e-17 79.0
MsG0180000399.01.T01 MTR_1g014190 28.571 280 146 10 43 288 66 325 1.01e-16 80.9
MsG0180000399.01.T01 MTR_1g086350 29.911 224 119 9 71 288 19 210 1.08e-16 79.7
MsG0180000399.01.T01 MTR_5g063940 30.657 274 143 12 55 327 54 281 2.60e-16 78.6
MsG0180000399.01.T01 MTR_3g464700 30.279 251 131 12 40 287 89 298 2.77e-16 79.0
MsG0180000399.01.T01 MTR_4g007440 27.857 280 148 10 43 288 28 287 6.29e-16 78.2
MsG0180000399.01.T01 MTR_2g078760 29.268 205 105 9 115 303 55 235 8.89e-16 76.6
MsG0180000399.01.T01 MTR_3g091060 29.224 219 115 6 70 287 127 306 9.16e-16 77.8
MsG0180000399.01.T01 MTR_4g094208 30.328 244 125 13 62 302 56 257 9.85e-16 76.6
MsG0180000399.01.T01 MTR_2g033000 26.638 229 128 8 67 288 99 294 1.12e-15 77.8
MsG0180000399.01.T01 MTR_2g078760 30.964 197 112 9 115 303 134 314 1.37e-15 77.0
MsG0180000399.01.T01 MTR_3g074610 29.389 262 140 10 64 324 62 279 3.16e-15 75.5
MsG0180000399.01.T01 MTR_3g464650 30.120 249 134 11 40 287 65 274 3.39e-15 75.9
MsG0180000399.01.T01 MTR_7g090530 28.897 263 139 9 51 288 51 290 3.67e-15 76.6
MsG0180000399.01.T01 MTR_3g032660 28.939 311 149 13 65 330 65 348 4.80e-15 76.3
MsG0180000399.01.T01 MTR_4g119830 27.723 303 148 11 68 310 164 455 6.06e-15 75.9
MsG0180000399.01.T01 MTR_3g032700 29.221 308 146 13 68 330 68 348 7.61e-15 75.5
MsG0180000399.01.T01 MTR_2g008850 28.916 249 136 10 55 302 7 215 8.12e-15 73.2
MsG0180000399.01.T01 MTR_2g008850 28.195 266 150 10 38 302 36 261 2.24e-14 72.8
MsG0180000399.01.T01 MTR_7g090550 28.682 258 119 12 64 288 66 291 3.13e-14 73.6
MsG0180000399.01.T01 MTR_8g463130 28.226 248 119 11 66 303 65 263 3.91e-14 72.0
MsG0180000399.01.T01 MTR_8g463130 28.226 248 119 11 66 303 37 235 4.95e-14 71.6
MsG0180000399.01.T01 MTR_5g071550 29.134 254 130 10 40 287 125 334 4.45e-13 70.1
MsG0180000399.01.T01 MTR_4g116420 23.827 277 155 8 67 332 123 354 4.69e-13 70.1
MsG0180000399.01.T01 MTR_4g113345 25.568 352 192 14 19 337 10 324 6.13e-13 69.3
MsG0180000399.01.T01 MTR_1g116260 27.419 310 167 13 62 340 74 356 6.39e-13 69.3
MsG0180000399.01.T01 MTR_7g060770 24.333 300 176 10 41 311 239 516 8.17e-13 69.7
MsG0180000399.01.T01 MTR_7g100240 27.170 265 136 10 53 288 56 292 1.56e-12 68.2
MsG0180000399.01.T01 MTR_4g076560 25.373 268 160 8 68 312 202 452 2.68e-12 67.8
MsG0180000399.01.T01 MTR_3g032590 29.565 230 103 9 163 343 154 373 3.09e-12 67.8
MsG0180000399.01.T01 MTR_2g078760 31.977 172 93 9 115 278 134 289 5.83e-12 65.9
MsG0180000399.01.T01 MTR_0015s0140 28.195 266 155 10 65 312 76 323 5.10e-11 63.9
MsG0180000399.01.T01 MTR_5g071550 28.689 244 124 10 40 277 125 324 8.52e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000399.01.T01 AT5G26010 53.529 340 140 8 1 333 1 329 7.93e-107 316
MsG0180000399.01.T01 AT4G32950 48.688 343 146 7 1 333 1 323 3.72e-101 301
MsG0180000399.01.T01 AT5G36250 45.758 330 152 5 33 335 62 391 7.39e-100 302
MsG0180000399.01.T01 AT1G16220 48.598 321 143 5 31 329 57 377 9.29e-99 301
MsG0180000399.01.T01 AT1G03590 46.110 347 167 4 1 331 23 365 2.03e-98 299
MsG0180000399.01.T01 AT1G79630 44.321 361 151 5 11 329 48 400 2.96e-98 300
MsG0180000399.01.T01 AT1G79630 44.321 361 151 5 11 329 44 396 3.35e-98 300
MsG0180000399.01.T01 AT5G36250 44.186 344 151 6 33 335 62 405 1.22e-95 292
MsG0180000399.01.T01 AT4G03415 47.712 306 145 5 41 331 70 375 7.36e-92 282
MsG0180000399.01.T01 AT4G03415 47.712 306 145 5 41 331 70 375 7.36e-92 282
MsG0180000399.01.T01 AT4G03415 47.712 306 145 5 41 331 70 375 7.36e-92 282
MsG0180000399.01.T01 AT3G02750 45.029 342 147 4 33 334 59 399 1.85e-91 282
MsG0180000399.01.T01 AT3G02750 45.029 342 147 4 33 334 59 399 1.85e-91 282
MsG0180000399.01.T01 AT1G79630 46.732 306 122 3 65 329 25 330 6.14e-90 276
MsG0180000399.01.T01 AT1G79630 46.732 306 122 3 65 329 25 330 6.14e-90 276
MsG0180000399.01.T01 AT5G01700 45.085 295 150 4 44 332 4 292 3.60e-87 266
MsG0180000399.01.T01 AT5G01700 44.816 299 153 4 40 332 49 341 1.51e-86 266
MsG0180000399.01.T01 AT3G02750 40.849 377 147 5 33 334 59 434 3.76e-84 264
MsG0180000399.01.T01 AT3G05640 44.068 295 156 5 38 329 62 350 1.42e-81 252
MsG0180000399.01.T01 AT3G05640 44.068 295 156 5 38 329 62 350 1.42e-81 252
MsG0180000399.01.T01 AT3G05640 44.068 295 156 5 38 329 62 350 1.42e-81 252
MsG0180000399.01.T01 AT1G79630 55.814 215 94 1 116 329 76 290 2.69e-81 253
MsG0180000399.01.T01 AT1G79630 55.814 215 94 1 116 329 76 290 2.69e-81 253
MsG0180000399.01.T01 AT1G79630 55.814 215 94 1 116 329 76 290 2.69e-81 253
MsG0180000399.01.T01 AT1G79630 55.814 215 94 1 116 329 76 290 2.69e-81 253
MsG0180000399.01.T01 AT5G27930 42.321 293 166 3 38 327 61 353 4.90e-79 246
MsG0180000399.01.T01 AT5G27930 42.321 293 166 3 38 327 61 353 4.90e-79 246
MsG0180000399.01.T01 AT4G32950 46.996 283 122 6 1 275 1 263 2.82e-77 239
MsG0180000399.01.T01 AT5G36250 44.322 273 125 5 33 278 62 334 2.50e-76 239
MsG0180000399.01.T01 AT3G16800 38.591 298 173 4 35 329 59 349 9.41e-74 232
MsG0180000399.01.T01 AT3G16800 38.591 298 173 4 35 329 59 349 9.41e-74 232
MsG0180000399.01.T01 AT3G16800 38.591 298 173 4 35 329 59 349 9.41e-74 232
MsG0180000399.01.T01 AT5G27930 42.739 241 135 3 38 275 61 301 1.42e-63 205
MsG0180000399.01.T01 AT3G16800 37.931 261 153 3 71 329 1 254 2.27e-63 202
MsG0180000399.01.T01 AT3G16800 37.931 261 153 3 71 329 1 254 2.27e-63 202
MsG0180000399.01.T01 AT2G20050 30.645 310 167 8 39 324 108 393 1.86e-34 134
MsG0180000399.01.T01 AT2G20050 30.645 310 167 8 39 324 108 393 1.88e-34 134
MsG0180000399.01.T01 AT3G16800 36.310 168 97 4 35 199 59 219 9.91e-30 114
MsG0180000399.01.T01 AT3G06270 27.304 293 170 7 51 324 70 338 6.56e-29 114
MsG0180000399.01.T01 AT4G31750 36.036 222 112 7 114 327 81 280 1.53e-25 104
MsG0180000399.01.T01 AT4G31750 36.036 222 112 7 114 327 81 280 1.53e-25 104
MsG0180000399.01.T01 AT5G10740 30.566 265 136 8 67 329 63 281 1.76e-25 105
MsG0180000399.01.T01 AT5G10740 30.566 265 136 8 67 329 63 281 1.76e-25 105
MsG0180000399.01.T01 AT1G07430 31.900 279 156 11 22 290 102 356 1.95e-25 106
MsG0180000399.01.T01 AT4G31750 36.036 222 112 7 114 327 81 280 2.03e-25 104
MsG0180000399.01.T01 AT5G59220 32.342 269 125 9 41 290 114 344 5.57e-25 105
MsG0180000399.01.T01 AT5G24940 30.932 236 123 6 68 302 64 260 4.41e-24 102
MsG0180000399.01.T01 AT1G43900 32.773 238 119 7 67 303 153 350 6.80e-22 95.5
MsG0180000399.01.T01 AT3G11410 30.855 269 126 11 46 290 112 344 2.11e-20 91.7
MsG0180000399.01.T01 AT1G72770 31.064 235 125 7 66 287 236 446 1.11e-19 90.5
MsG0180000399.01.T01 AT1G72770 31.064 235 125 7 66 287 236 446 1.11e-19 90.5
MsG0180000399.01.T01 AT1G72770 31.064 235 125 7 66 287 236 446 1.11e-19 90.5
MsG0180000399.01.T01 AT2G20630 29.577 284 134 13 65 337 60 288 2.22e-19 87.4
MsG0180000399.01.T01 AT2G29380 29.297 256 152 10 41 290 80 312 9.27e-19 86.7
MsG0180000399.01.T01 AT4G28400 29.730 259 125 10 62 311 40 250 9.63e-19 85.1
MsG0180000399.01.T01 AT2G20630 30.645 248 116 10 65 303 60 260 1.11e-18 85.1
MsG0180000399.01.T01 AT4G28400 29.730 259 125 10 62 311 62 272 1.47e-18 84.7
MsG0180000399.01.T01 AT2G25620 29.137 278 141 11 67 332 127 360 5.38e-18 84.7
MsG0180000399.01.T01 AT2G25620 29.137 278 141 11 67 332 127 360 5.38e-18 84.7
MsG0180000399.01.T01 AT5G53140 29.197 274 136 10 70 336 134 356 6.05e-18 84.7
MsG0180000399.01.T01 AT5G53140 29.197 274 136 10 70 336 134 356 6.05e-18 84.7
MsG0180000399.01.T01 AT2G33700 30.962 239 116 8 66 296 121 318 9.90e-18 84.0
MsG0180000399.01.T01 AT5G57050 30.909 220 124 6 68 287 120 311 9.92e-18 84.0
MsG0180000399.01.T01 AT5G57050 32.287 223 117 8 68 287 160 351 1.16e-17 84.0
MsG0180000399.01.T01 AT4G26080 31.797 217 116 8 68 283 172 357 1.22e-17 84.0
MsG0180000399.01.T01 AT5G51760 30.417 240 131 7 68 295 114 329 1.67e-17 83.2
MsG0180000399.01.T01 AT5G51760 30.417 240 131 7 68 295 144 359 1.99e-17 83.2
MsG0180000399.01.T01 AT3G62260 29.310 232 125 8 64 288 23 222 2.55e-17 81.6
MsG0180000399.01.T01 AT4G31860 27.857 280 148 10 43 288 28 287 3.56e-17 81.3
MsG0180000399.01.T01 AT4G31860 27.857 280 148 10 43 288 28 287 5.72e-17 81.3
MsG0180000399.01.T01 AT3G62260 29.310 232 125 8 64 288 113 312 5.74e-17 81.6
MsG0180000399.01.T01 AT3G62260 29.310 232 125 8 64 288 112 311 7.02e-17 81.3
MsG0180000399.01.T01 AT1G67820 29.431 299 171 9 41 337 87 347 7.77e-17 81.3
MsG0180000399.01.T01 AT1G17550 30.493 223 131 6 68 283 237 442 8.20e-17 81.6
MsG0180000399.01.T01 AT1G17550 30.493 223 131 6 68 283 237 442 8.20e-17 81.6
MsG0180000399.01.T01 AT2G34740 31.579 266 132 13 67 329 118 336 8.78e-17 80.5
MsG0180000399.01.T01 AT1G67820 29.431 299 171 9 41 337 123 383 1.30e-16 80.9
MsG0180000399.01.T01 AT1G78200 32.796 186 95 5 126 302 54 218 1.68e-16 78.2
MsG0180000399.01.T01 AT1G78200 32.796 186 95 5 126 302 54 218 1.68e-16 78.2
MsG0180000399.01.T01 AT1G78200 33.520 179 103 5 126 302 99 263 2.53e-16 78.6
MsG0180000399.01.T01 AT1G78200 33.520 179 103 5 126 302 99 263 2.53e-16 78.6
MsG0180000399.01.T01 AT1G78200 33.520 179 103 5 126 302 99 263 2.53e-16 78.6
MsG0180000399.01.T01 AT1G22280 30.935 278 133 16 59 327 59 286 4.11e-16 78.2
MsG0180000399.01.T01 AT3G51470 27.848 237 125 8 57 288 51 246 4.38e-16 78.2
MsG0180000399.01.T01 AT3G51470 27.848 237 125 8 57 288 95 290 6.39e-16 78.2
MsG0180000399.01.T01 AT2G40180 29.368 269 142 10 28 288 118 346 7.57e-16 78.2
MsG0180000399.01.T01 AT3G17250 26.957 230 130 8 67 288 157 356 1.28e-15 77.8
MsG0180000399.01.T01 AT1G18030 28.750 240 128 5 67 294 108 316 1.60e-15 77.0
MsG0180000399.01.T01 AT1G18030 29.911 224 114 5 67 278 108 300 1.74e-15 76.6
MsG0180000399.01.T01 AT2G25070 27.148 291 157 11 32 288 18 287 2.51e-15 76.6
MsG0180000399.01.T01 AT2G25070 27.148 291 157 11 32 288 18 287 2.51e-15 76.6
MsG0180000399.01.T01 AT1G07160 27.891 294 170 10 40 328 124 380 6.42e-15 75.5
MsG0180000399.01.T01 AT2G30020 28.287 251 138 9 40 287 141 352 9.00e-15 75.1
MsG0180000399.01.T01 AT1G34750 30.000 200 94 8 126 311 101 268 1.37e-14 73.6
MsG0180000399.01.T01 AT1G34750 30.000 200 94 8 126 311 101 268 1.37e-14 73.6
MsG0180000399.01.T01 AT1G34750 30.000 200 94 8 126 311 101 268 1.37e-14 73.6
MsG0180000399.01.T01 AT1G22280 30.037 273 136 16 59 327 59 280 9.09e-14 71.2
MsG0180000399.01.T01 AT4G28400 30.088 226 101 10 62 278 62 239 1.96e-13 69.7
MsG0180000399.01.T01 AT1G48040 28.509 228 127 9 67 288 115 312 2.36e-13 70.9
MsG0180000399.01.T01 AT3G16560 24.739 287 163 9 68 312 175 450 3.88e-13 70.5
MsG0180000399.01.T01 AT3G16560 24.739 287 163 9 68 312 175 450 4.55e-13 70.5
MsG0180000399.01.T01 AT3G16560 24.739 287 163 9 68 312 175 450 4.55e-13 70.5
MsG0180000399.01.T01 AT3G16560 24.739 287 163 9 68 312 175 450 4.55e-13 70.5
MsG0180000399.01.T01 AT3G55050 25.862 290 159 13 50 312 68 328 4.81e-12 67.0
MsG0180000399.01.T01 AT3G55050 25.862 290 159 13 50 312 68 328 4.81e-12 67.0
MsG0180000399.01.T01 AT3G15260 29.231 195 102 8 125 307 104 274 7.16e-12 65.9
MsG0180000399.01.T01 AT3G15260 29.231 195 102 8 125 307 104 274 7.16e-12 65.9
MsG0180000399.01.T01 AT3G12620 27.734 256 120 11 66 288 81 304 1.31e-11 65.5
MsG0180000399.01.T01 AT3G12620 27.734 256 120 11 66 288 81 304 1.31e-11 65.5
MsG0180000399.01.T01 AT4G27800 31.282 195 88 7 126 288 131 311 1.88e-11 64.7
MsG0180000399.01.T01 AT4G27800 26.619 278 142 10 43 288 64 311 2.14e-11 64.7
MsG0180000399.01.T01 AT4G27800 31.282 195 88 7 126 288 131 311 3.02e-11 64.3
MsG0180000399.01.T01 AT2G34740 33.889 180 93 10 112 282 147 309 4.04e-11 63.9
MsG0180000399.01.T01 AT5G06750 26.502 283 157 10 58 312 71 330 4.10e-11 63.9
MsG0180000399.01.T01 AT5G06750 26.502 283 157 10 58 312 71 330 4.10e-11 63.9
MsG0180000399.01.T01 AT2G34740 31.193 218 108 11 67 282 114 291 4.81e-11 63.5

Find 88 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTGTGTTTATGCGTTAA+AGG 0.236530 1:-5512890 MsG0180000399.01.T01:CDS
TTATTGCTACACCAGATATT+TGG 0.238563 1:-5512768 MsG0180000399.01.T01:CDS
CTAGCCATGTCTCGAGCTTT+TGG 0.296306 1:-5512817 MsG0180000399.01.T01:CDS
AAAGTCTCTTAGTCTCATTT+TGG 0.297664 1:+5514775 None:intergenic
TATATGGATAGTGGAAAATT+AGG 0.306461 1:-5512425 MsG0180000399.01.T01:CDS
TGCATAAACAAAGGTCATAT+TGG 0.325193 1:-5512267 MsG0180000399.01.T01:three_prime_UTR
CAGGCGAAGCAAAGAGAATA+AGG 0.327044 1:-5512921 MsG0180000399.01.T01:CDS
ACCACAAAACTTGAAGTATA+TGG 0.329185 1:-5512441 MsG0180000399.01.T01:CDS
TCTCCTCAAGAGCATTCTTT+TGG 0.348401 1:+5513993 None:intergenic
TATCGAGTAAACCTTTGTTT+TGG 0.350613 1:-5512290 MsG0180000399.01.T01:three_prime_UTR
TCTTGGAGCTTTCAATGTAA+TGG 0.363239 1:-5513894 MsG0180000399.01.T01:CDS
AGATGGAAAGAAGCTATTCT+TGG 0.379447 1:-5513911 MsG0180000399.01.T01:CDS
ATTGGTCATTTGATGTTAAA+CGG 0.380120 1:+5512740 None:intergenic
AAACGGTGATACCAAATATC+TGG 0.385349 1:+5512757 None:intergenic
TAGTTATCTTCTAAACATAA+AGG 0.386051 1:-5512385 MsG0180000399.01.T01:three_prime_UTR
TTGACCACTGATTTGAAGCC+TGG 0.390238 1:-5513629 MsG0180000399.01.T01:CDS
GTGGTTTCTTCTGCAGGAAA+TGG 0.397763 1:+5512459 None:intergenic
CACTTGCAAGAACAATAAAT+TGG 0.399587 1:+5512722 None:intergenic
AGTACCTTGTTTAGAGTAAA+CGG 0.400838 1:+5514749 None:intergenic
TTTCAAACAACTATCTAAGA+TGG 0.418400 1:-5513928 MsG0180000399.01.T01:CDS
CAAATCAGTGGTCAATTGAA+TGG 0.418841 1:+5513637 None:intergenic
TTACTCTAAACAAGGTACTA+AGG 0.430230 1:-5514745 MsG0180000399.01.T01:CDS
AACCACATGTCCAACGAGTA+TGG 0.432459 1:-5512864 MsG0180000399.01.T01:CDS
GTTGCATCTTCAGAGATTCA+TGG 0.433464 1:-5514849 MsG0180000399.01.T01:CDS
TTTATTGTTCTTGCAAGTGA+TGG 0.439321 1:-5512718 MsG0180000399.01.T01:CDS
AGTTATCTTCTAAACATAAA+GGG 0.456494 1:-5512384 MsG0180000399.01.T01:three_prime_UTR
CTTCTTTGCCCATGCAGCTG+TGG 0.458224 1:+5512520 None:intergenic
AGGCCAGGGTAGTTCTCGTT+GGG 0.473048 1:+5512838 None:intergenic
TAATTGCATAACAAGTAGAA+TGG 0.479826 1:-5514886 MsG0180000399.01.T01:exon
CATTCTCATCATGAACTTGA+GGG 0.480118 1:+5514823 None:intergenic
AAGGATTATGGGATGAAAGA+TGG 0.481239 1:-5514106 MsG0180000399.01.T01:CDS
AGAATCTTACAAGGCAATCC+AGG 0.481837 1:+5513611 None:intergenic
TTATTGTTCTTGCAAGTGAT+GGG 0.484730 1:-5512717 MsG0180000399.01.T01:CDS
TTTAGAAGATAACTAGTTGA+AGG 0.487199 1:+5512393 None:intergenic
GCTCGAGACATGGCTAGGCC+AGG 0.488145 1:+5512823 None:intergenic
TAGGCCAGGGTAGTTCTCGT+TGG 0.489834 1:+5512837 None:intergenic
AACTTGAAGTATATGGATAG+TGG 0.491644 1:-5512434 MsG0180000399.01.T01:CDS
GGAAGCTGCAAGGGCAGTGG+TGG 0.495822 1:-5512549 MsG0180000399.01.T01:CDS
GGAAGCAACCACAGCTGCAT+GGG 0.496943 1:-5512528 MsG0180000399.01.T01:CDS
CAAAGAAGTTTCCTTCCTCT+AGG 0.507704 1:-5512505 MsG0180000399.01.T01:CDS
AACATAAAGGGCTAGCTACA+AGG 0.508383 1:-5512372 MsG0180000399.01.T01:three_prime_UTR
AATTGCATAACAAGTAGAAT+GGG 0.510404 1:-5514885 MsG0180000399.01.T01:exon
TGCAATTGTGTCCCTACAGT+TGG 0.514072 1:+5512314 None:intergenic
AAGTGAAGAGGAAGCTGCAA+GGG 0.515272 1:-5512558 MsG0180000399.01.T01:CDS
TGCTGTAGTTGTCATAAGAC+AGG 0.527202 1:-5513819 MsG0180000399.01.T01:intron
GAGCCAAAAGAATGCTCTTG+AGG 0.530104 1:-5513996 MsG0180000399.01.T01:CDS
AATCTAGATTGTTCTTGTAG+TGG 0.537196 1:-5513848 MsG0180000399.01.T01:CDS
TACTCTAAACAAGGTACTAA+GGG 0.539094 1:-5514744 MsG0180000399.01.T01:CDS
GGTGAAGAGAGGCAGCATCT+TGG 0.550423 1:+5514715 None:intergenic
ACATTCTCATCATGAACTTG+AGG 0.551482 1:+5514822 None:intergenic
AGATGCTGCCTCTCTTCACC+AGG 0.559380 1:-5514712 MsG0180000399.01.T01:intron
GGTCTTATCATAGTTAACCT+TGG 0.561803 1:-5513707 MsG0180000399.01.T01:CDS
TGGAAGCAACCACAGCTGCA+TGG 0.562091 1:-5512529 MsG0180000399.01.T01:CDS
AAAGAAGTTTCCTTCCTCTA+GGG 0.562358 1:-5512504 MsG0180000399.01.T01:CDS
AACCATACTCGTTGGACATG+TGG 0.563398 1:+5512862 None:intergenic
CGTTGGGCAACCATACTCGT+TGG 0.564491 1:+5512854 None:intergenic
AAGCATGTACGCCAACTGTA+GGG 0.567636 1:-5512325 MsG0180000399.01.T01:three_prime_UTR
GTAAAATATACACTTCATGA+AGG 0.567712 1:-5512210 MsG0180000399.01.T01:three_prime_UTR
TTTCAATGTAATGGATGAAG+AGG 0.572129 1:-5513885 MsG0180000399.01.T01:CDS
CATGATATTTGAAGCAAGCA+AGG 0.574257 1:-5514799 MsG0180000399.01.T01:CDS
TTAGAAGATAACTAGTTGAA+GGG 0.574388 1:+5512394 None:intergenic
AGAGGAAGCTGCAAGGGCAG+TGG 0.574488 1:-5512552 MsG0180000399.01.T01:CDS
AAAGCATGTACGCCAACTGT+AGG 0.574877 1:-5512326 MsG0180000399.01.T01:three_prime_UTR
CTCGAGACATGGCTAGGCCA+GGG 0.576527 1:+5512824 None:intergenic
CAAAAGCTCGAGACATGGCT+AGG 0.576969 1:+5512818 None:intergenic
GCATGGTTGGTTATGAGATG+TGG 0.583868 1:-5512159 MsG0180000399.01.T01:three_prime_UTR
ATCTCCAAAAGCTCGAGACA+TGG 0.593896 1:+5512813 None:intergenic
TTGCCCAACGAGAACTACCC+TGG 0.600486 1:-5512841 MsG0180000399.01.T01:CDS
CAATCATCTACCCTAGAGGA+AGG 0.600898 1:+5512494 None:intergenic
TTGTTTATGCACCAAAACAA+AGG 0.601605 1:+5512279 None:intergenic
ATGAATCTCTGAAGATGCAA+CGG 0.607268 1:+5514851 None:intergenic
TGCTCCGTTTACTCTAAACA+AGG 0.613627 1:-5514753 MsG0180000399.01.T01:CDS
TATTGTTCTTGCAAGTGATG+GGG 0.615238 1:-5512716 MsG0180000399.01.T01:intron
GAACAATATAAACAGGGTGA+AGG 0.617168 1:-5513728 MsG0180000399.01.T01:intron
GAGACAAACCTGGTGAAGAG+AGG 0.618796 1:+5514704 None:intergenic
TGTGGTGTTTATGATGGACA+TGG 0.621779 1:-5514076 MsG0180000399.01.T01:CDS
AAAGTGAAGAGGAAGCTGCA+AGG 0.626066 1:-5512559 MsG0180000399.01.T01:CDS
CAATCCAGGCTTCAAATCAG+TGG 0.634673 1:+5513625 None:intergenic
GTGGATGATAGAAAGTGAAG+AGG 0.653357 1:-5512570 MsG0180000399.01.T01:CDS
AAGAGGTTGCATCAATTGTG+TGG 0.658363 1:-5512589 MsG0180000399.01.T01:CDS
AAGAGAATAAGGAGTTGCAA+CGG 0.664540 1:-5512910 MsG0180000399.01.T01:CDS
GGATGTACTAAGTAATGAAG+AGG 0.676441 1:-5512606 MsG0180000399.01.T01:CDS
AAATTGCTCTTGAGTCACCA+AGG 0.682678 1:+5513690 None:intergenic
GATTTCATACTCAAAGACCA+TGG 0.690159 1:-5512793 MsG0180000399.01.T01:CDS
CTGCAGGAAATGGCAAACCA+CGG 0.691531 1:+5512469 None:intergenic
GGTGCAATCATCTACCCTAG+AGG 0.703711 1:+5512490 None:intergenic
CTGGTGTAGCAATAACACCA+TGG 0.708013 1:+5512776 None:intergenic
TAGGGTAGATGATTGCACCG+TGG 0.761662 1:-5512486 MsG0180000399.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTTAAATTACTAAAAAA+AGG + Chr1:5512728-5512747 None:intergenic 10.0%
!!! TTTTCTAAAAAAATAAAGAT+AGG - Chr1:5513777-5513796 MsG0180000399.01.T01:intron 10.0%
!! TAATTGATATTAAAATTCGT+TGG + Chr1:5513830-5513849 None:intergenic 15.0%
!!! AAGTGTATATTTTACATTAA+AGG + Chr1:5514843-5514862 None:intergenic 15.0%
!!! AATTTAAGATATCATGATTA+TGG - Chr1:5512737-5512756 MsG0180000399.01.T01:CDS 15.0%
!!! TATAGATATTTTTTGCTTAT+AGG - Chr1:5514425-5514444 MsG0180000399.01.T01:intron 15.0%
!! AACACAAAAAAAAACTTTGA+TGG - Chr1:5512678-5512697 MsG0180000399.01.T01:intron 20.0%
!! AAGTACATGACTTTATAAAA+AGG + Chr1:5512860-5512879 None:intergenic 20.0%
!! AGTTATCTTCTAAACATAAA+GGG - Chr1:5514674-5514693 MsG0180000399.01.T01:intron 20.0%
!! ATAACAAGAACAATATAAAC+AGG - Chr1:5513323-5513342 MsG0180000399.01.T01:intron 20.0%
!! CTAAAAAAATAAAGATAGGT+GGG - Chr1:5513781-5513800 MsG0180000399.01.T01:intron 20.0%
!! GAGATTAATACAACAAAAAA+TGG - Chr1:5513084-5513103 MsG0180000399.01.T01:intron 20.0%
!! TAACAAGAACAATATAAACA+GGG - Chr1:5513324-5513343 MsG0180000399.01.T01:intron 20.0%
!! TAGTTATCTTCTAAACATAA+AGG - Chr1:5514673-5514692 MsG0180000399.01.T01:intron 20.0%
!! TCTAAAAAAATAAAGATAGG+TGG - Chr1:5513780-5513799 MsG0180000399.01.T01:intron 20.0%
!! TGTTGTGATCTTTAATATTA+AGG - Chr1:5512585-5512604 MsG0180000399.01.T01:CDS 20.0%
!! TTAAGGAAAAAGAAACAAAA+GGG + Chr1:5512932-5512951 None:intergenic 20.0%
!! TTCATATAACTGTTAAACTA+AGG + Chr1:5513698-5513717 None:intergenic 20.0%
!! TTTAAGGAAAAAGAAACAAA+AGG + Chr1:5512933-5512952 None:intergenic 20.0%
!!! AATTTGAAGATAATTTTGCA+TGG - Chr1:5512527-5512546 MsG0180000399.01.T01:CDS 20.0%
!!! ATTTTTATAGATTTTGTGCA+TGG - Chr1:5514882-5514901 MsG0180000399.01.T01:exon 20.0%
!!! TAACCTTTAAATAATTTGCA+TGG - Chr1:5512388-5512407 MsG0180000399.01.T01:three_prime_UTR 20.0%
!!! TATATTTTACATTAAAGGTG+TGG + Chr1:5514838-5514857 None:intergenic 20.0%
!!! TTTGTTTCTTTTTCCTTAAA+AGG - Chr1:5512933-5512952 MsG0180000399.01.T01:intron 20.0%
!!! TTTTTCCTTAAAAGGATTAT+GGG - Chr1:5512941-5512960 MsG0180000399.01.T01:intron 20.0%
! AATTGCATAACAAGTAGAAT+GGG - Chr1:5512173-5512192 MsG0180000399.01.T01:three_prime_UTR 25.0%
! ATTGGTCATTTGATGTTAAA+CGG + Chr1:5514321-5514340 None:intergenic 25.0%
! GTAAAATATACACTTCATGA+AGG - Chr1:5514848-5514867 MsG0180000399.01.T01:CDS 25.0%
! TAATTGCATAACAAGTAGAA+TGG - Chr1:5512172-5512191 MsG0180000399.01.T01:three_prime_UTR 25.0%
! TCTAAACTAAATTGAAATGC+AGG - Chr1:5514118-5514137 MsG0180000399.01.T01:intron 25.0%
! TTAGAAGATAACTAGTTGAA+GGG + Chr1:5514667-5514686 None:intergenic 25.0%
! TTCATATTAAGCAGAAAACA+CGG + Chr1:5514019-5514038 None:intergenic 25.0%
! TTTAGAAGATAACTAGTTGA+AGG + Chr1:5514668-5514687 None:intergenic 25.0%
! TTTATGAGAAGAATCTTACA+AGG + Chr1:5513459-5513478 None:intergenic 25.0%
! TTTCAAACAACTATCTAAGA+TGG - Chr1:5513130-5513149 MsG0180000399.01.T01:intron 25.0%
!! CTTTTTCCTTAAAAGGATTA+TGG - Chr1:5512940-5512959 MsG0180000399.01.T01:intron 25.0%
!!! ATATTTTTTGCTTATAGGTG+TGG - Chr1:5514430-5514449 MsG0180000399.01.T01:intron 25.0%
!!! CTTTTCAATTATTGGTTTGA+CGG - Chr1:5513493-5513512 MsG0180000399.01.T01:intron 25.0%
!!! TATATGGATAGTGGAAAATT+AGG - Chr1:5514633-5514652 MsG0180000399.01.T01:intron 25.0%
!!! TATTTTTTGCTTATAGGTGT+GGG - Chr1:5514431-5514450 MsG0180000399.01.T01:intron 25.0%
AACTTGAAGTATATGGATAG+TGG - Chr1:5514624-5514643 MsG0180000399.01.T01:intron 30.0%
AATCTAGATTGTTCTTGTAG+TGG - Chr1:5513210-5513229 MsG0180000399.01.T01:intron 30.0%
ACCACAAAACTTGAAGTATA+TGG - Chr1:5514617-5514636 MsG0180000399.01.T01:intron 30.0%
AGAAACAAAAGGGAGATATA+TGG + Chr1:5512922-5512941 None:intergenic 30.0%
ATAATTGAAAAGAAGCTGCA+TGG + Chr1:5513485-5513504 None:intergenic 30.0%
ATGAGAGAATTAAAACCTTG+TGG + Chr1:5512414-5512433 None:intergenic 30.0%
CAAATAAGAGACTTCTAGAT+AGG - Chr1:5513747-5513766 MsG0180000399.01.T01:intron 30.0%
CAATCTGAGTCAAGATATTA+AGG + Chr1:5512827-5512846 None:intergenic 30.0%
CACTTGCAAGAACAATAAAT+TGG + Chr1:5514339-5514358 None:intergenic 30.0%
CTTGCATACAACAATTTCAA+TGG - Chr1:5514389-5514408 MsG0180000399.01.T01:intron 30.0%
GAATATGACACTCATTTGAT+TGG - Chr1:5514036-5514055 MsG0180000399.01.T01:CDS 30.0%
TAAACGTCAATAATGACACA+GGG - Chr1:5513878-5513897 MsG0180000399.01.T01:CDS 30.0%
TCTTCAAATTCTACACAACT+TGG + Chr1:5512517-5512536 None:intergenic 30.0%
TGCATAAACAAAGGTCATAT+TGG - Chr1:5514791-5514810 MsG0180000399.01.T01:CDS 30.0%
TGGCCATGCAAATTATTTAA+AGG + Chr1:5512394-5512413 None:intergenic 30.0%
TTAAACGTCAATAATGACAC+AGG - Chr1:5513877-5513896 MsG0180000399.01.T01:CDS 30.0%
TTATTGCTACACCAGATATT+TGG - Chr1:5514290-5514309 MsG0180000399.01.T01:intron 30.0%
TTATTGTTCTTGCAAGTGAT+GGG - Chr1:5514341-5514360 MsG0180000399.01.T01:intron 30.0%
TTGTTTATGCACCAAAACAA+AGG + Chr1:5514782-5514801 None:intergenic 30.0%
TTTATTGTTCTTGCAAGTGA+TGG - Chr1:5514340-5514359 MsG0180000399.01.T01:intron 30.0%
! AAAGTCTCTTAGTCTCATTT+TGG + Chr1:5512286-5512305 None:intergenic 30.0%
! AGTACCTTGTTTAGAGTAAA+CGG + Chr1:5512312-5512331 None:intergenic 30.0%
! TACTCTAAACAAGGTACTAA+GGG - Chr1:5512314-5512333 MsG0180000399.01.T01:three_prime_UTR 30.0%
! TGCAGCTTCTTTTCAATTAT+TGG - Chr1:5513485-5513504 MsG0180000399.01.T01:intron 30.0%
! TGTGTCATTATTGACGTTTA+AGG + Chr1:5513878-5513897 None:intergenic 30.0%
! TTACTCTAAACAAGGTACTA+AGG - Chr1:5512313-5512332 MsG0180000399.01.T01:three_prime_UTR 30.0%
! TTATAGATTTTGTGCATGGT+TGG - Chr1:5514886-5514905 MsG0180000399.01.T01:exon 30.0%
! TTCATCCCATAATCCTTTTA+AGG + Chr1:5512949-5512968 None:intergenic 30.0%
!! TATCGAGTAAACCTTTGTTT+TGG - Chr1:5514768-5514787 MsG0180000399.01.T01:CDS 30.0%
!! TATGATGGACATGGAAAAAA+TGG - Chr1:5512991-5513010 MsG0180000399.01.T01:intron 30.0%
!! TCCATATACTTCAAGTTTTG+TGG + Chr1:5514621-5514640 None:intergenic 30.0%
!! TTTCAATGTAATGGATGAAG+AGG - Chr1:5513173-5513192 MsG0180000399.01.T01:intron 30.0%
!!! ACAAGGTTTTAATTCTCTCA+TGG - Chr1:5512413-5512432 MsG0180000399.01.T01:exon 30.0%
!!! TTGTTTTGGTGCATAAACAA+AGG - Chr1:5514782-5514801 MsG0180000399.01.T01:CDS 30.0%
AAACGGTGATACCAAATATC+TGG + Chr1:5514304-5514323 None:intergenic 35.0%
AAAGAAGTTTCCTTCCTCTA+GGG - Chr1:5514554-5514573 MsG0180000399.01.T01:intron 35.0%
AAGAGAATAAGGAGTTGCAA+CGG - Chr1:5514148-5514167 MsG0180000399.01.T01:intron 35.0%
AAGGATTATGGGATGAAAGA+TGG - Chr1:5512952-5512971 MsG0180000399.01.T01:intron 35.0%
ACACGATTCAAGCAAGAAAT+CGG + Chr1:5512782-5512801 None:intergenic 35.0%
ACATTCTCATCATGAACTTG+AGG + Chr1:5512239-5512258 None:intergenic 35.0%
AGATGGAAAGAAGCTATTCT+TGG - Chr1:5513147-5513166 MsG0180000399.01.T01:intron 35.0%
ATAAGAGACTTCTAGATAGG+TGG - Chr1:5513750-5513769 MsG0180000399.01.T01:intron 35.0%
ATGGTAATCACGAACAAATG+TGG - Chr1:5512756-5512775 MsG0180000399.01.T01:CDS 35.0%
ATTAAGCAGAAAACACGGAT+GGG + Chr1:5514014-5514033 None:intergenic 35.0%
ATTTCTTGCTTGAATCGTGT+TGG - Chr1:5512782-5512801 MsG0180000399.01.T01:CDS 35.0%
CAAATCAGTGGTCAATTGAA+TGG + Chr1:5513424-5513443 None:intergenic 35.0%
CATTCTCATCATGAACTTGA+GGG + Chr1:5512238-5512257 None:intergenic 35.0%
CTGTTAAACTAAGGTGTGTA+TGG + Chr1:5513689-5513708 None:intergenic 35.0%
GAACAATATAAACAGGGTGA+AGG - Chr1:5513330-5513349 MsG0180000399.01.T01:intron 35.0%
GATTTCATACTCAAAGACCA+TGG - Chr1:5514265-5514284 MsG0180000399.01.T01:intron 35.0%
GGATGTACTAAGTAATGAAG+AGG - Chr1:5514452-5514471 MsG0180000399.01.T01:intron 35.0%
TATTAAGCAGAAAACACGGA+TGG + Chr1:5514015-5514034 None:intergenic 35.0%
TATTGTTCTTGCAAGTGATG+GGG - Chr1:5514342-5514361 MsG0180000399.01.T01:intron 35.0%
TCTTGGAGCTTTCAATGTAA+TGG - Chr1:5513164-5513183 MsG0180000399.01.T01:intron 35.0%
! AAATAATTTGCATGGCCACA+AGG - Chr1:5512396-5512415 MsG0180000399.01.T01:three_prime_UTR 35.0%
! ATGAATCTCTGAAGATGCAA+CGG + Chr1:5512210-5512229 None:intergenic 35.0%
! CATGATATTTGAAGCAAGCA+AGG - Chr1:5512259-5512278 MsG0180000399.01.T01:three_prime_UTR 35.0%
! GCATTTTGTGGTGTTTATGA+TGG - Chr1:5512976-5512995 MsG0180000399.01.T01:intron 35.0%
! GGTCTTATCATAGTTAACCT+TGG - Chr1:5513351-5513370 MsG0180000399.01.T01:intron 35.0%
!! ATGAAAGATGGAGCATTTTG+TGG - Chr1:5512964-5512983 MsG0180000399.01.T01:intron 35.0%
!!! TGGCTTTGAGTTTTTCATCT+TGG + Chr1:5513404-5513423 None:intergenic 35.0%
!!! TTTTGGCTCAAAATGAGAGA+TGG + Chr1:5513051-5513070 None:intergenic 35.0%
AAATTGCTCTTGAGTCACCA+AGG + Chr1:5513371-5513390 None:intergenic 40.0%
AAGAGGTTGCATCAATTGTG+TGG - Chr1:5514469-5514488 MsG0180000399.01.T01:intron 40.0%
AGAATCTTACAAGGCAATCC+AGG + Chr1:5513450-5513469 None:intergenic 40.0%
CAAAGAAGTTTCCTTCCTCT+AGG - Chr1:5514553-5514572 MsG0180000399.01.T01:intron 40.0%
CGGTTGTGTTTATGCGTTAA+AGG - Chr1:5514168-5514187 MsG0180000399.01.T01:intron 40.0%
GCAACATTAGTCGCATTTGA+TGG + Chr1:5512478-5512497 None:intergenic 40.0%
GTGGATGATAGAAAGTGAAG+AGG - Chr1:5514488-5514507 MsG0180000399.01.T01:intron 40.0%
GTTGCATCTTCAGAGATTCA+TGG - Chr1:5512209-5512228 MsG0180000399.01.T01:three_prime_UTR 40.0%
TCATGATTGAGAGACAAACC+TGG + Chr1:5512367-5512386 None:intergenic 40.0%
TGCTCCGTTTACTCTAAACA+AGG - Chr1:5512305-5512324 MsG0180000399.01.T01:three_prime_UTR 40.0%
TGCTGTAGTTGTCATAAGAC+AGG - Chr1:5513239-5513258 MsG0180000399.01.T01:intron 40.0%
TTAAGCTGCTGATGTCTTCA+AGG - Chr1:5513649-5513668 MsG0180000399.01.T01:CDS 40.0%
! GGTGACTCAAGAGCAATTTT+AGG - Chr1:5513372-5513391 MsG0180000399.01.T01:intron 40.0%
! TTTTGCATGGCTACACTACA+AGG - Chr1:5512540-5512559 MsG0180000399.01.T01:CDS 40.0%
!! AACATAAAGGGCTAGCTACA+AGG - Chr1:5514686-5514705 MsG0180000399.01.T01:intron 40.0%
!! AGTTTTGTGGTTTCTTCTGC+AGG + Chr1:5514608-5514627 None:intergenic 40.0%
!! TGTGGTGTTTATGATGGACA+TGG - Chr1:5512982-5513001 MsG0180000399.01.T01:intron 40.0%
!!! TCTCCTCAAGAGCATTCTTT+TGG + Chr1:5513068-5513087 None:intergenic 40.0%
AAAGCATGTACGCCAACTGT+AGG - Chr1:5514732-5514751 MsG0180000399.01.T01:CDS 45.0%
AAAGTGAAGAGGAAGCTGCA+AGG - Chr1:5514499-5514518 MsG0180000399.01.T01:intron 45.0%
AACCACATGTCCAACGAGTA+TGG - Chr1:5514194-5514213 MsG0180000399.01.T01:intron 45.0%
AACCATACTCGTTGGACATG+TGG + Chr1:5514199-5514218 None:intergenic 45.0%
AAGCATGTACGCCAACTGTA+GGG - Chr1:5514733-5514752 MsG0180000399.01.T01:CDS 45.0%
AAGTGAAGAGGAAGCTGCAA+GGG - Chr1:5514500-5514519 MsG0180000399.01.T01:intron 45.0%
ATCTCCAAAAGCTCGAGACA+TGG + Chr1:5514248-5514267 None:intergenic 45.0%
CAATCATCTACCCTAGAGGA+AGG + Chr1:5514567-5514586 None:intergenic 45.0%
CAATCCAGGCTTCAAATCAG+TGG + Chr1:5513436-5513455 None:intergenic 45.0%
CAGGCGAAGCAAAGAGAATA+AGG - Chr1:5514137-5514156 MsG0180000399.01.T01:intron 45.0%
CTGGTGTAGCAATAACACCA+TGG + Chr1:5514285-5514304 None:intergenic 45.0%
GAGCCAAAAGAATGCTCTTG+AGG - Chr1:5513062-5513081 MsG0180000399.01.T01:intron 45.0%
GTGGTTTCTTCTGCAGGAAA+TGG + Chr1:5514602-5514621 None:intergenic 45.0%
TGCAATTGTGTCCCTACAGT+TGG + Chr1:5514747-5514766 None:intergenic 45.0%
! GCATGGTTGGTTATGAGATG+TGG - Chr1:5514899-5514918 MsG0180000399.01.T01:five_prime_UTR 45.0%
!! TTGACCACTGATTTGAAGCC+TGG - Chr1:5513429-5513448 MsG0180000399.01.T01:intron 45.0%
AAGCAGAAAACACGGATGGG+TGG + Chr1:5514011-5514030 None:intergenic 50.0%
CAAAAGCTCGAGACATGGCT+AGG + Chr1:5514243-5514262 None:intergenic 50.0%
CTGCAGGAAATGGCAAACCA+CGG + Chr1:5514592-5514611 None:intergenic 50.0%
GAGACAAACCTGGTGAAGAG+AGG + Chr1:5512357-5512376 None:intergenic 50.0%
GGTGCAATCATCTACCCTAG+AGG + Chr1:5514571-5514590 None:intergenic 50.0%
TAGGGTAGATGATTGCACCG+TGG - Chr1:5514572-5514591 MsG0180000399.01.T01:intron 50.0%
! CTAGCCATGTCTCGAGCTTT+TGG - Chr1:5514241-5514260 MsG0180000399.01.T01:intron 50.0%
AGATGCTGCCTCTCTTCACC+AGG - Chr1:5512346-5512365 MsG0180000399.01.T01:three_prime_UTR 55.0%
AGGCCAGGGTAGTTCTCGTT+GGG + Chr1:5514223-5514242 None:intergenic 55.0%
CGTTGGGCAACCATACTCGT+TGG + Chr1:5514207-5514226 None:intergenic 55.0%
CTTCTTTGCCCATGCAGCTG+TGG + Chr1:5514541-5514560 None:intergenic 55.0%
GGAAGCAACCACAGCTGCAT+GGG - Chr1:5514530-5514549 MsG0180000399.01.T01:intron 55.0%
GGTGAAGAGAGGCAGCATCT+TGG + Chr1:5512346-5512365 None:intergenic 55.0%
TAGGCCAGGGTAGTTCTCGT+TGG + Chr1:5514224-5514243 None:intergenic 55.0%
TGGAAGCAACCACAGCTGCA+TGG - Chr1:5514529-5514548 MsG0180000399.01.T01:intron 55.0%
TTGCCCAACGAGAACTACCC+TGG - Chr1:5514217-5514236 MsG0180000399.01.T01:intron 55.0%
AGAGGAAGCTGCAAGGGCAG+TGG - Chr1:5514506-5514525 MsG0180000399.01.T01:intron 60.0%
CTCGAGACATGGCTAGGCCA+GGG + Chr1:5514237-5514256 None:intergenic 60.0%
GCTCGAGACATGGCTAGGCC+AGG + Chr1:5514238-5514257 None:intergenic 65.0%
GGAAGCTGCAAGGGCAGTGG+TGG - Chr1:5514509-5514528 MsG0180000399.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5512150 5514930 5512150 ID=MsG0180000399.01;Name=MsG0180000399.01
Chr1 mRNA 5512150 5514930 5512150 ID=MsG0180000399.01.T01;Parent=MsG0180000399.01;Name=MsG0180000399.01.T01;_AED=0.27;_eAED=0.27;_QI=41|1|1|1|1|1|5|271|344
Chr1 exon 5514713 5514930 5514713 ID=MsG0180000399.01.T01:exon:28187;Parent=MsG0180000399.01.T01
Chr1 exon 5513820 5514125 5513820 ID=MsG0180000399.01.T01:exon:28188;Parent=MsG0180000399.01.T01
Chr1 exon 5513621 5513735 5513621 ID=MsG0180000399.01.T01:exon:28189;Parent=MsG0180000399.01.T01
Chr1 exon 5512717 5512940 5512717 ID=MsG0180000399.01.T01:exon:28190;Parent=MsG0180000399.01.T01
Chr1 exon 5512150 5512633 5512150 ID=MsG0180000399.01.T01:exon:28191;Parent=MsG0180000399.01.T01
Chr1 five_prime_UTR 5514890 5514930 5514890 ID=MsG0180000399.01.T01:five_prime_utr;Parent=MsG0180000399.01.T01
Chr1 CDS 5514713 5514889 5514713 ID=MsG0180000399.01.T01:cds;Parent=MsG0180000399.01.T01
Chr1 CDS 5513820 5514125 5513820 ID=MsG0180000399.01.T01:cds;Parent=MsG0180000399.01.T01
Chr1 CDS 5513621 5513735 5513621 ID=MsG0180000399.01.T01:cds;Parent=MsG0180000399.01.T01
Chr1 CDS 5512717 5512940 5512717 ID=MsG0180000399.01.T01:cds;Parent=MsG0180000399.01.T01
Chr1 CDS 5512421 5512633 5512421 ID=MsG0180000399.01.T01:cds;Parent=MsG0180000399.01.T01
Chr1 three_prime_UTR 5512150 5512420 5512150 ID=MsG0180000399.01.T01:three_prime_utr;Parent=MsG0180000399.01.T01
Gene Sequence

>MsG0180000399.01.T01

ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAGCAAGGTCCAAAATGAGACTAAGAGACTTTGCTCCGTTTACTCTAAACAAGGTACTAAGGGTCTCAACCAAGATGCTGCCTCTCTTCACCAGGATTATGGGATGAAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAAAAATGGACATATAGTGAGCAAAATAGTAAACAATACTTTACCATCTCTCATTTTGAGCCAAAAGAATGCTCTTGAGGAGATTAATACAACAAAAAATGGTGTTGACAACAAACAAAACAAATTTTCAAACAACTATCTAAGATGGAAAGAAGCTATTCTTGGAGCTTTCAATGTAATGGATGAAGAGGTGAAACAACAAGAGAATCTAGATTGTTCTTGTAGTGGAACTACTGCTGTAGTTGTCATAAGACAGGGTGAAGGTCTTATCATAGTTAACCTTGGTGACTCAAGAGCAATTTTAGGAACAATCCAAGATGAAAAACTCAAAGCCATTCAATTGACCACTGATTTGAAGCCTGGATTGCCTTGCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTTTATGCGTTAAAGGAAGAACCACATGTCCAACGAGTATGGTTGCCCAACGAGAACTACCCTGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTCATACTCAAAGACCATGGTGTTATTGCTACACCAGATATTTGGTATCACCGTTTAACATCAAATGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGATAGAAAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAACCACAGCTGCATGGGCAAAGAAGTTTCCTTCCTCTAGGGTAGATGATTGCACCGTGGTTTGCCATTTCCTGCAGAAGAAACCACAAAACTTGAAGTATATGGATAGTGGAAAATTAGGTTAA

Protein sequence

>MsG0180000399.01.T01

MGICISVASSEIHGIPQVHDENVMIFEASKVQNETKRLCSVYSKQGTKGLNQDAASLHQDYGMKDGAFCGVYDGHGKNGHIVSKIVNNTLPSLILSQKNALEEINTTKNGVDNKQNKFSNNYLRWKEAILGAFNVMDEEVKQQENLDCSCSGTTAVVVIRQGEGLIIVNLGDSRAILGTIQDEKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIATPDIWYHRLTSNDQFIVLASDGVWDVLSNEEVASIVWMIESEEEAARAVVEATTAAWAKKFPSSRVDDCTVVCHFLQKKPQNLKYMDSGKLG*