AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048889.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048889.01.T01 MTR_7g050870 97.653 554 13 0 1 554 1 554 0.0 1123
MsG0080048889.01.T01 MTR_7g050950 84.838 554 83 1 1 554 1 553 0.0 961
MsG0080048889.01.T01 MTR_7g050980 82.883 555 94 1 1 554 1 555 0.0 961
MsG0080048889.01.T01 MTR_7g108905 46.237 558 265 10 24 554 7 556 5.93e-162 473
MsG0080048889.01.T01 MTR_2g044880 52.902 448 191 9 117 554 88 525 7.78e-158 461
MsG0080048889.01.T01 MTR_1g008140 47.959 490 218 9 97 554 123 607 2.43e-157 463
MsG0080048889.01.T01 MTR_8g023310 47.159 528 238 10 52 554 78 589 6.96e-154 453
MsG0080048889.01.T01 MTR_4g087980 49.892 465 212 8 99 554 64 516 1.11e-151 445
MsG0080048889.01.T01 MTR_3g091380 42.393 585 285 13 10 554 25 597 4.85e-150 444
MsG0080048889.01.T01 MTR_4g025730 46.704 531 247 14 31 554 8 509 4.26e-147 433
MsG0080048889.01.T01 MTR_8g104655 44.633 531 245 9 47 554 37 541 6.64e-146 431
MsG0080048889.01.T01 MTR_4g025690 51.778 450 187 10 112 554 87 513 2.83e-143 423
MsG0080048889.01.T01 MTR_4g087970 48.430 446 215 7 117 554 79 517 9.56e-142 420
MsG0080048889.01.T01 MTR_8g104645 56.395 344 144 3 215 554 31 372 6.38e-140 410
MsG0080048889.01.T01 MTR_4g025670 47.875 447 198 8 121 554 65 489 8.02e-137 406
MsG0080048889.01.T01 MTR_3g033690 43.321 554 269 15 15 554 4 526 4.21e-136 405
MsG0080048889.01.T01 MTR_3g008640 49.091 440 201 10 124 554 102 527 4.74e-136 405
MsG0080048889.01.T01 MTR_7g053360 51.716 408 179 9 153 554 132 527 5.47e-135 403
MsG0080048889.01.T01 MTR_3g008700 49.091 440 201 11 124 554 102 527 1.20e-134 402
MsG0080048889.01.T01 MTR_3g008720 48.636 440 203 10 124 554 102 527 9.39e-134 399
MsG0080048889.01.T01 MTR_7g112580 41.811 519 263 12 55 554 44 542 7.65e-133 398
MsG0080048889.01.T01 MTR_8g042900 43.545 519 272 12 48 554 72 581 2.79e-131 395
MsG0080048889.01.T01 MTR_4g035980 45.618 445 229 6 117 554 101 539 9.33e-131 392
MsG0080048889.01.T01 MTR_3g010780 41.992 512 267 11 54 550 74 570 1.82e-129 390
MsG0080048889.01.T01 MTR_7g108900 43.936 503 234 9 92 554 66 560 3.67e-129 389
MsG0080048889.01.T01 MTR_4g124520 45.185 405 213 5 153 554 123 521 3.02e-124 375
MsG0080048889.01.T01 MTR_1g054880 40.925 562 277 14 34 554 11 558 3.41e-124 376
MsG0080048889.01.T01 MTR_1g083520 46.756 447 215 10 122 554 91 528 4.59e-124 375
MsG0080048889.01.T01 MTR_1g088020 45.106 470 217 11 121 554 91 555 1.50e-123 374
MsG0080048889.01.T01 MTR_2g044810 37.708 541 313 8 19 554 13 534 2.64e-123 373
MsG0080048889.01.T01 MTR_7g108875 43.863 497 239 11 94 554 72 564 5.07e-122 371
MsG0080048889.01.T01 MTR_4g124550 40.038 527 273 13 54 554 84 593 8.97e-121 369
MsG0080048889.01.T01 MTR_8g023150 40.820 512 275 9 54 550 80 578 5.93e-119 363
MsG0080048889.01.T01 MTR_7g108890 44.118 476 212 11 121 554 99 562 9.62e-118 360
MsG0080048889.01.T01 MTR_1g088225 44.421 466 216 12 121 550 91 549 1.01e-117 359
MsG0080048889.01.T01 MTR_8g042910 43.096 478 220 9 121 554 143 612 2.94e-115 355
MsG0080048889.01.T01 MTR_1g086190 37.879 528 286 13 54 554 51 563 5.55e-115 353
MsG0080048889.01.T01 MTR_1g086210 39.278 471 254 5 114 554 101 569 2.13e-114 351
MsG0080048889.01.T01 MTR_3g010770 41.633 490 220 10 117 554 100 575 1.12e-112 347
MsG0080048889.01.T01 MTR_8g104580 38.418 531 245 11 47 554 29 500 7.82e-112 342
MsG0080048889.01.T01 MTR_1g083470 39.911 451 252 9 116 550 119 566 8.43e-111 342
MsG0080048889.01.T01 MTR_1g083500 39.911 451 252 9 116 550 119 566 8.43e-111 342
MsG0080048889.01.T01 MTR_1g083510 38.586 495 264 12 92 553 95 582 1.23e-108 337
MsG0080048889.01.T01 MTR_7g110440 36.053 527 283 12 54 544 45 553 6.36e-106 330
MsG0080048889.01.T01 MTR_4g005170 36.852 521 302 12 48 550 60 571 8.87e-106 331
MsG0080048889.01.T01 MTR_1g083490 39.427 454 252 10 116 551 124 572 1.35e-105 329
MsG0080048889.01.T01 MTR_7g112590 38.495 465 257 8 117 553 119 582 4.04e-105 328
MsG0080048889.01.T01 MTR_0458s0030 55.872 281 115 5 278 554 39 314 1.26e-104 317
MsG0080048889.01.T01 MTR_1g088040 55.872 281 115 5 278 554 39 314 1.26e-104 317
MsG0080048889.01.T01 MTR_7g110490 35.977 517 291 10 54 538 45 553 2.16e-103 323
MsG0080048889.01.T01 MTR_7g110510 35.977 517 291 10 54 538 45 553 2.16e-103 323
MsG0080048889.01.T01 MTR_4g005180 39.381 452 251 10 117 550 107 553 4.75e-103 322
MsG0080048889.01.T01 MTR_2g436040 35.867 513 304 10 52 550 41 542 1.07e-100 317
MsG0080048889.01.T01 MTR_4g120280 36.905 504 279 13 76 550 75 568 1.11e-99 313
MsG0080048889.01.T01 MTR_4g120290 36.653 502 289 11 76 553 75 571 1.63e-99 313
MsG0080048889.01.T01 MTR_2g044660 48.214 336 163 6 220 554 307 632 1.59e-98 312
MsG0080048889.01.T01 MTR_0618s0020 59.565 230 91 1 325 554 1 228 9.66e-98 296
MsG0080048889.01.T01 MTR_7g110560 33.741 572 328 16 10 554 2 549 1.06e-96 305
MsG0080048889.01.T01 MTR_2g436050 35.619 525 293 13 54 553 59 563 1.73e-96 305
MsG0080048889.01.T01 MTR_7g110420 33.647 532 295 13 54 543 45 560 8.23e-93 296
MsG0080048889.01.T01 MTR_8g093460 36.420 486 266 14 92 553 84 550 3.48e-89 285
MsG0080048889.01.T01 MTR_7g110430 33.143 525 267 12 54 544 45 519 1.17e-86 278
MsG0080048889.01.T01 MTR_2g044810 48.627 255 128 2 300 554 214 465 4.73e-85 272
MsG0080048889.01.T01 MTR_3g095920 33.795 577 310 19 27 553 9 563 7.75e-85 274
MsG0080048889.01.T01 MTR_8g088610 41.071 336 190 5 217 550 43 372 2.22e-83 265
MsG0080048889.01.T01 MTR_5g083620 38.872 337 201 4 220 554 23 356 4.29e-81 258
MsG0080048889.01.T01 MTR_0458s0010 36.943 471 209 19 121 550 91 514 2.82e-73 243
MsG0080048889.01.T01 MTR_7g107180 38.924 316 179 4 240 554 5 307 6.52e-68 222
MsG0080048889.01.T01 MTR_2g105560 37.460 315 181 4 241 554 40 339 6.84e-66 218
MsG0080048889.01.T01 MTR_7g111560 31.099 537 308 21 47 554 53 556 2.76e-60 209
MsG0080048889.01.T01 MTR_2g039530 39.542 306 167 7 217 520 29 318 5.09e-60 202
MsG0080048889.01.T01 MTR_6g024165 34.824 313 174 10 242 543 41 334 2.52e-48 171
MsG0080048889.01.T01 MTR_1g086540 33.651 315 182 7 239 543 47 344 2.63e-47 169
MsG0080048889.01.T01 MTR_7g092780 33.866 313 183 6 242 544 90 388 6.74e-47 169
MsG0080048889.01.T01 MTR_6g012800 31.373 306 184 7 242 537 6 295 1.35e-46 166
MsG0080048889.01.T01 MTR_6g088810 35.738 305 168 7 250 543 90 377 5.24e-45 163
MsG0080048889.01.T01 MTR_8g102380 35.889 287 157 6 243 516 81 353 7.94e-43 157
MsG0080048889.01.T01 MTR_5g083590 30.915 317 164 5 240 554 5 268 1.24e-41 151
MsG0080048889.01.T01 MTR_5g095490 33.333 309 177 7 248 544 67 358 3.43e-41 152
MsG0080048889.01.T01 MTR_7g011530 31.095 283 172 5 244 516 8 277 8.96e-41 150
MsG0080048889.01.T01 MTR_4g124740 31.861 317 172 10 242 544 54 340 2.48e-39 147
MsG0080048889.01.T01 MTR_6g042660 30.496 282 171 6 240 516 35 296 1.56e-38 144
MsG0080048889.01.T01 MTR_7g102600 30.625 320 195 8 237 545 92 395 4.36e-38 145
MsG0080048889.01.T01 MTR_4g074290 31.833 311 183 9 242 543 71 361 4.05e-37 141
MsG0080048889.01.T01 MTR_8g102380 35.496 262 144 5 243 491 81 330 4.69e-37 140
MsG0080048889.01.T01 MTR_1g033050 31.022 274 167 5 250 516 26 284 2.33e-36 138
MsG0080048889.01.T01 MTR_2g073390 31.290 310 186 9 242 543 71 361 4.24e-36 138
MsG0080048889.01.T01 MTR_0009s0350 30.226 354 213 12 202 543 30 361 2.31e-35 136
MsG0080048889.01.T01 MTR_0009s0340 30.226 354 213 12 202 543 30 361 2.31e-35 136
MsG0080048889.01.T01 MTR_5g093970 31.392 309 187 7 242 545 43 331 8.21e-35 134
MsG0080048889.01.T01 MTR_5g012600 29.371 286 178 5 242 516 63 335 2.58e-34 133
MsG0080048889.01.T01 MTR_6g042690 29.965 287 171 6 240 516 37 303 1.04e-33 131
MsG0080048889.01.T01 MTR_5g088300 27.864 323 211 6 229 551 24 324 9.29e-33 128
MsG0080048889.01.T01 MTR_5g088280 28.065 310 197 7 238 545 35 320 1.23e-29 119
MsG0080048889.01.T01 MTR_5g088290 26.974 304 201 5 242 545 48 330 8.50e-29 117
MsG0080048889.01.T01 MTR_2g436070 32.340 235 144 5 92 313 89 321 2.10e-28 117
MsG0080048889.01.T01 MTR_2g033970 28.173 323 208 7 227 543 42 346 9.14e-28 114
MsG0080048889.01.T01 MTR_4g051810 28.819 288 186 5 229 516 24 292 6.51e-27 111
MsG0080048889.01.T01 MTR_8g036225 27.113 284 180 7 242 516 33 298 3.89e-24 103
MsG0080048889.01.T01 MTR_6g025590 35.119 168 101 4 242 401 49 216 5.24e-21 92.8
MsG0080048889.01.T01 MTR_2g436600 26.250 320 209 8 227 543 41 336 6.92e-21 94.4
MsG0080048889.01.T01 MTR_0408s0030 37.000 100 52 2 417 516 35 123 1.29e-16 77.8
MsG0080048889.01.T01 MTR_4g130790 30.726 179 113 4 265 436 48 222 3.76e-15 76.3
MsG0080048889.01.T01 MTR_6g024200 33.594 128 68 4 418 543 164 276 3.93e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048889.01.T01 AT1G11580 56.661 563 224 8 3 554 4 557 0.0 614
MsG0080048889.01.T01 AT1G11580 56.661 563 224 8 3 554 25 578 0.0 613
MsG0080048889.01.T01 AT5G53370 47.468 474 229 7 97 554 116 585 9.72e-153 450
MsG0080048889.01.T01 AT5G53370 47.468 474 229 7 97 554 152 621 3.46e-152 450
MsG0080048889.01.T01 AT3G49220 48.026 456 213 7 116 554 148 596 3.62e-147 436
MsG0080048889.01.T01 AT3G43270 46.973 479 224 7 97 554 56 525 4.00e-147 434
MsG0080048889.01.T01 AT3G49220 48.026 456 213 7 116 554 193 641 7.39e-147 437
MsG0080048889.01.T01 AT3G14310 45.956 544 233 12 52 554 69 592 3.55e-144 429
MsG0080048889.01.T01 AT1G53830 45.693 534 240 10 53 550 64 583 3.47e-142 423
MsG0080048889.01.T01 AT4G33220 48.172 465 209 9 117 554 64 523 5.05e-142 421
MsG0080048889.01.T01 AT3G59010 50.221 452 185 10 120 554 100 528 9.33e-139 412
MsG0080048889.01.T01 AT2G45220 51.351 444 186 13 117 554 92 511 8.40e-138 409
MsG0080048889.01.T01 AT3G60730 45.514 457 221 8 121 554 68 519 4.45e-134 400
MsG0080048889.01.T01 AT2G43050 47.865 445 198 10 120 554 96 516 1.48e-132 396
MsG0080048889.01.T01 AT4G02320 44.027 452 229 6 115 550 71 514 1.71e-131 394
MsG0080048889.01.T01 AT4G02300 45.033 453 223 7 118 554 90 532 3.01e-131 393
MsG0080048889.01.T01 AT4G33220 49.257 404 182 5 169 554 4 402 2.55e-130 386
MsG0080048889.01.T01 AT1G11590 42.829 516 264 11 56 554 23 524 7.35e-129 387
MsG0080048889.01.T01 AT2G26440 41.040 519 287 7 49 554 35 547 3.70e-128 386
MsG0080048889.01.T01 AT1G02810 41.021 568 259 14 48 554 25 577 4.58e-128 387
MsG0080048889.01.T01 AT3G05620 42.803 528 239 14 57 554 47 541 2.79e-126 381
MsG0080048889.01.T01 AT5G04960 41.683 523 268 10 41 550 62 560 4.79e-126 381
MsG0080048889.01.T01 AT4G03930 41.426 519 267 12 56 554 23 524 1.95e-125 378
MsG0080048889.01.T01 AT5G27870 42.605 453 240 6 116 554 116 562 2.50e-125 385
MsG0080048889.01.T01 AT5G51490 47.458 413 200 6 150 554 133 536 5.86e-125 377
MsG0080048889.01.T01 AT5G51500 45.434 449 226 7 117 554 100 540 4.76e-124 375
MsG0080048889.01.T01 AT4G02330 41.219 558 261 15 49 554 29 571 6.31e-124 376
MsG0080048889.01.T01 AT3G27980 42.147 503 260 12 56 554 22 497 3.66e-122 369
MsG0080048889.01.T01 AT2G47550 41.252 543 269 12 47 554 31 558 1.63e-121 369
MsG0080048889.01.T01 AT1G23200 39.420 586 267 16 16 554 10 554 2.69e-121 369
MsG0080048889.01.T01 AT3G10710 39.922 516 276 9 50 554 69 561 3.15e-120 366
MsG0080048889.01.T01 AT3G47400 46.731 413 207 4 150 554 187 594 5.74e-120 366
MsG0080048889.01.T01 AT1G53840 40.038 527 263 13 54 548 76 581 1.14e-117 360
MsG0080048889.01.T01 AT3G05610 40.749 454 247 9 117 554 118 565 2.09e-117 362
MsG0080048889.01.T01 AT2G26450 38.252 515 289 12 54 554 112 611 2.24e-116 358
MsG0080048889.01.T01 AT4G33230 39.771 523 279 12 54 554 98 606 3.61e-114 352
MsG0080048889.01.T01 AT3G14300 40.404 495 267 9 63 540 471 954 5.67e-113 358
MsG0080048889.01.T01 AT5G49180 36.673 559 319 13 18 551 19 567 1.03e-111 344
MsG0080048889.01.T01 AT4G00190 43.318 434 219 9 119 550 62 470 1.08e-109 336
MsG0080048889.01.T01 AT5G20860 41.798 445 230 9 123 554 110 538 1.56e-109 338
MsG0080048889.01.T01 AT3G10720 39.919 496 233 9 111 554 133 615 2.65e-108 337
MsG0080048889.01.T01 AT5G04970 39.029 515 249 9 92 554 119 620 3.05e-107 334
MsG0080048889.01.T01 AT3G06830 38.758 467 242 11 115 550 111 564 3.02e-105 327
MsG0080048889.01.T01 AT1G11370 58.197 244 102 0 239 482 43 286 1.46e-102 311
MsG0080048889.01.T01 AT4G15980 43.733 375 203 5 181 550 327 698 5.91e-96 307
MsG0080048889.01.T01 AT4G15980 43.733 375 203 5 181 550 337 708 1.00e-95 307
MsG0080048889.01.T01 AT3G10720 53.435 262 119 2 293 554 1 259 3.12e-94 288
MsG0080048889.01.T01 AT5G20860 38.372 430 208 8 123 539 110 495 2.24e-88 282
MsG0080048889.01.T01 AT5G09760 36.276 521 276 18 55 542 49 546 1.26e-86 278
MsG0080048889.01.T01 AT5G09760 36.276 521 276 18 55 542 75 572 1.79e-86 279
MsG0080048889.01.T01 AT2G47030 30.988 597 340 12 21 554 1 588 2.03e-84 274
MsG0080048889.01.T01 AT2G47040 31.954 604 337 13 15 554 2 595 2.54e-84 274
MsG0080048889.01.T01 AT3G62170 36.036 444 231 8 157 554 152 588 1.03e-79 261
MsG0080048889.01.T01 AT5G64640 34.623 491 259 18 92 546 137 601 6.87e-78 257
MsG0080048889.01.T01 AT1G44980 43.043 230 125 4 180 406 16 242 4.89e-52 178
MsG0080048889.01.T01 AT1G05310 33.333 321 184 6 237 544 86 389 2.21e-46 167
MsG0080048889.01.T01 AT3G29090 31.930 285 171 4 242 516 7 278 1.33e-44 160
MsG0080048889.01.T01 AT5G19730 35.294 306 170 7 250 544 94 382 2.04e-44 162
MsG0080048889.01.T01 AT2G21610 31.803 305 184 7 242 544 51 333 1.50e-40 150
MsG0080048889.01.T01 AT2G21610 31.803 305 184 7 242 544 56 338 2.10e-40 150
MsG0080048889.01.T01 AT2G36710 30.721 319 198 7 239 548 86 390 7.43e-40 150
MsG0080048889.01.T01 AT2G36700 30.164 305 193 5 244 543 44 333 2.33e-37 141
MsG0080048889.01.T01 AT2G19150 30.303 330 198 8 232 550 31 339 1.15e-36 139
MsG0080048889.01.T01 AT5G07430 30.645 310 186 8 242 543 67 355 2.00e-36 139
MsG0080048889.01.T01 AT5G61680 29.379 354 213 11 203 543 29 358 2.26e-36 139
MsG0080048889.01.T01 AT5G55590 31.348 319 190 8 238 544 78 379 7.70e-36 138
MsG0080048889.01.T01 AT3G49220 34.874 238 130 7 116 336 193 422 1.17e-35 139
MsG0080048889.01.T01 AT5G07420 28.421 380 221 12 175 543 16 355 4.09e-35 135
MsG0080048889.01.T01 AT5G55590 32.308 260 152 6 238 485 78 325 4.48e-34 132
MsG0080048889.01.T01 AT5G47500 27.796 313 199 6 242 543 61 357 7.33e-34 132
MsG0080048889.01.T01 AT5G18990 29.720 286 175 6 242 516 29 299 5.52e-33 129
MsG0080048889.01.T01 AT3G24130 29.000 300 186 7 229 516 20 304 7.08e-33 129
MsG0080048889.01.T01 AT1G69940 29.605 304 184 9 249 543 73 355 1.27e-32 129
MsG0080048889.01.T01 AT2G19150 30.855 269 163 5 232 491 31 285 1.95e-32 126
MsG0080048889.01.T01 AT3G17060 28.435 313 193 8 241 543 45 336 3.10e-32 127
MsG0080048889.01.T01 AT5G07410 29.276 304 185 9 249 543 73 355 8.74e-32 126
MsG0080048889.01.T01 AT5G26810 26.316 342 209 7 230 545 11 335 2.05e-28 116
MsG0080048889.01.T01 AT2G47280 30.000 290 175 8 238 516 31 303 3.54e-27 112

Find 141 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTGAGAATCTCGTTTA+TGG 0.106683 contig515end:+4076 MsG0080048889.01.T01:intergenic
GGGCCGCAAGTTTGCTCTTC+TGG 0.178693 contig515end:+4762 MsG0080048889.01.T01:intergenic
TTGGTTGCTCATGGGCTTTC+GGG 0.200551 contig515end:+4742 MsG0080048889.01.T01:intergenic
GCAACTGCCTGGTGCTTCTC+TGG 0.201967 contig515end:+4938 MsG0080048889.01.T01:intergenic
GGTACTGTTGACTTTATCTT+TGG 0.223151 contig515end:-4803 MsG0080048889.01.T01:CDS
TGTTGAGATGAGAAATAATA+AGG 0.234584 contig515end:+5949 MsG0080048889.01.T01:intergenic
TATCGTTACACGCTTGTTAA+AGG 0.237303 contig515end:+4290 MsG0080048889.01.T01:intergenic
GTATGTTATCTATGTGAAAA+AGG 0.250218 contig515end:-5241 MsG0080048889.01.T01:CDS
TACCGTGACTCCTACATTAC+TGG 0.252009 contig515end:-4824 MsG0080048889.01.T01:CDS
TTTGGTTGCTCATGGGCTTT+CGG 0.253715 contig515end:+4741 MsG0080048889.01.T01:intergenic
GAATGACTGTGAGGAATTAA+TGG 0.257485 contig515end:-5682 MsG0080048889.01.T01:CDS
ATCTCGTTTATGGATTAAAA+AGG 0.277378 contig515end:+4086 MsG0080048889.01.T01:intergenic
TCTCTGGGCCTGCTGTGTTT+TGG 0.279420 contig515end:+4954 MsG0080048889.01.T01:intergenic
TACAAAGAGAACGTAGAAAT+TGG 0.292611 contig515end:-5213 MsG0080048889.01.T01:CDS
TTTGAAAGCATCTAATTATA+CGG 0.301691 contig515end:+3947 MsG0080048889.01.T01:intergenic
TGTACTCAATTTGTGGTCTT+TGG 0.308331 contig515end:+5809 MsG0080048889.01.T01:intergenic
ATTTGTCCATGGATAGAGTT+TGG 0.321286 contig515end:-5659 MsG0080048889.01.T01:CDS
GAGAGATTGAAGAAGGAGAT+AGG 0.326855 contig515end:+5924 MsG0080048889.01.T01:intergenic
GGTTTATAGCTCAGGACATT+AGG 0.333498 contig515end:-4979 MsG0080048889.01.T01:CDS
TCCCATTCAGCCCATCCAGC+TGG 0.338971 contig515end:+4527 MsG0080048889.01.T01:intergenic
GGCAGCTTAAATTTCATAGA+TGG 0.343017 contig515end:-5132 MsG0080048889.01.T01:CDS
AACTTGCTTGGATGGATTAG+AGG 0.346392 contig515end:-5550 MsG0080048889.01.T01:CDS
TAATATATAAAACTGGAAAT+TGG 0.346524 contig515end:+4123 MsG0080048889.01.T01:intergenic
GAAGTTGCGGTGTTCTGGTT+TGG 0.352786 contig515end:+4686 MsG0080048889.01.T01:intergenic
AAGTAAGGATCGAAGACTTT+TGG 0.353401 contig515end:-5376 MsG0080048889.01.T01:CDS
CAAGTTTATTTCCAGACATT+AGG 0.357594 contig515end:+4169 MsG0080048889.01.T01:intergenic
AAGTTGCGGTGTTCTGGTTT+GGG 0.358889 contig515end:+4687 MsG0080048889.01.T01:intergenic
GAATTGAAGTTGCGGTGTTC+TGG 0.361783 contig515end:+4681 MsG0080048889.01.T01:intergenic
CGTCATGGAAAGTGATCTTC+AGG 0.379387 contig515end:-5514 MsG0080048889.01.T01:CDS
TTTGTCCATGGATAGAGTTT+GGG 0.389169 contig515end:-5658 MsG0080048889.01.T01:CDS
ATGAATCCGTCGTTAGCCTT+TGG 0.389233 contig515end:+5438 MsG0080048889.01.T01:intergenic
TCGAATGTGTTCAGTCGATT+TGG 0.391545 contig515end:+5770 MsG0080048889.01.T01:intergenic
ATCTTCAGTTGGGGATATAA+AGG 0.392503 contig515end:-5352 MsG0080048889.01.T01:CDS
ATCGTTACACGCTTGTTAAA+GGG 0.394716 contig515end:+4291 MsG0080048889.01.T01:intergenic
ACTGTTGTAATATATAAAAC+TGG 0.407645 contig515end:+4116 MsG0080048889.01.T01:intergenic
TTTCTGCAAACATTGTATTA+CGG 0.410608 contig515end:-4488 MsG0080048889.01.T01:CDS
TTTGTAGCTGCTGTTGGAGA+TGG 0.411988 contig515end:-5001 MsG0080048889.01.T01:intron
AGCTCATCCAAGGTAATGTT+TGG 0.413571 contig515end:-4358 MsG0080048889.01.T01:CDS
CAACTGCCTGGTGCTTCTCT+GGG 0.418631 contig515end:+4939 MsG0080048889.01.T01:intergenic
TACCTTGTCTTACCATTGTC+TGG 0.419460 contig515end:+5261 MsG0080048889.01.T01:intergenic
TCCATCTTGGGTGACAAGTA+AGG 0.423120 contig515end:-5391 MsG0080048889.01.T01:CDS
CACTAACCATGCAACTTGCT+TGG 0.434494 contig515end:-5562 MsG0080048889.01.T01:CDS
ACTAGTCACTAGTATCAGTA+TGG 0.437694 contig515end:-6066 MsG0080048889.01.T01:exon
ATCTTCAGGACTTGATCTCC+AGG 0.439711 contig515end:-5500 MsG0080048889.01.T01:CDS
AACCATGCAACTTGCTTGGA+TGG 0.443880 contig515end:-5558 MsG0080048889.01.T01:CDS
GGCCAATGTTGTGGTGGCTC+AGG 0.444253 contig515end:-5331 MsG0080048889.01.T01:CDS
TGAATGGGATGCCGCGAGTA+AGG 0.450233 contig515end:-4513 MsG0080048889.01.T01:CDS
GCTTGTCTAGCAAAGATTGT+TGG 0.453804 contig515end:+6039 MsG0080048889.01.T01:intergenic
CCCAGCTGGATGGGCTGAAT+GGG 0.457700 contig515end:-4528 MsG0080048889.01.T01:CDS
TGGAGATGGGTTTATAGCTC+AGG 0.458718 contig515end:-4987 MsG0080048889.01.T01:CDS
ATATGAGTGTACTCAATTTG+TGG 0.460078 contig515end:+5802 MsG0080048889.01.T01:intergenic
AGGCCAAGTCACTCTCTTAC+CGG 0.460463 contig515end:+4433 MsG0080048889.01.T01:intergenic
TTGTTAAAGGGAATTTCTAC+AGG 0.460636 contig515end:+4303 MsG0080048889.01.T01:intergenic
TTGTAGCTGCTGTTGGAGAT+GGG 0.474986 contig515end:-5000 MsG0080048889.01.T01:intron
AGAGCATGCTCACATAGATT+AGG 0.476252 contig515end:+5894 MsG0080048889.01.T01:intergenic
TCCTTACTTGTCACCCAAGA+TGG 0.477577 contig515end:+5390 MsG0080048889.01.T01:intergenic
AGCGGAGCTGGTGCTGGTAC+CGG 0.479706 contig515end:-4452 MsG0080048889.01.T01:CDS
GATGCTAGTGGGTGATGGTA+TGG 0.484075 contig515end:-5172 MsG0080048889.01.T01:CDS
TGTTTCTGTCTTGCCTCCAA+AGG 0.485356 contig515end:-5454 MsG0080048889.01.T01:CDS
ACCCAGCTGGATGGGCTGAA+TGG 0.489911 contig515end:-4529 MsG0080048889.01.T01:CDS
AGCTGAGGAGAGATTGAAGA+AGG 0.490290 contig515end:+5917 MsG0080048889.01.T01:intergenic
CGAGATTCTCAGAATGATGA+AGG 0.494540 contig515end:-4069 MsG0080048889.01.T01:three_prime_UTR
CCACATTGACCCAGCTGGAT+GGG 0.495322 contig515end:-4537 MsG0080048889.01.T01:CDS
GCCACATTGACCCAGCTGGA+TGG 0.497047 contig515end:-4538 MsG0080048889.01.T01:CDS
AGCAGGCCCAGAGAAGCACC+AGG 0.500215 contig515end:-4945 MsG0080048889.01.T01:CDS
GAGTACATGAACAGCGGAGC+TGG 0.504149 contig515end:-4464 MsG0080048889.01.T01:CDS
GTTGAGATGAGAAATAATAA+GGG 0.504890 contig515end:+5950 MsG0080048889.01.T01:intergenic
CCTCTCTAGGGCTATTAACA+CGG 0.513251 contig515end:+5715 MsG0080048889.01.T01:intergenic
AATCCGTCGTTAGCCTTTGG+AGG 0.514243 contig515end:+5441 MsG0080048889.01.T01:intergenic
ATGTTGTGGTGGCTCAGGAC+GGG 0.518219 contig515end:-5326 MsG0080048889.01.T01:CDS
TGTATTGAATGCCTAATGTC+TGG 0.519962 contig515end:-4180 MsG0080048889.01.T01:three_prime_UTR
TGGATTAGAGGGTTCATCTC+GGG 0.520702 contig515end:-5538 MsG0080048889.01.T01:CDS
AGGAGCCTTGCACAGGCTTG+AGG 0.521239 contig515end:+4630 MsG0080048889.01.T01:intergenic
TCTTCAACCAAACATTACCT+TGG 0.521933 contig515end:+4351 MsG0080048889.01.T01:intergenic
CATGTATCAGAAGTGGTTCA+AGG 0.525478 contig515end:-5849 MsG0080048889.01.T01:CDS
CTGATACTAGTGACTAGTAC+TGG 0.525804 contig515end:+6071 MsG0080048889.01.T01:intergenic
GTCCTGGAGTATTTCTTCCA+TGG 0.530775 contig515end:+4587 MsG0080048889.01.T01:intergenic
CCCATTCAGCCCATCCAGCT+GGG 0.532917 contig515end:+4528 MsG0080048889.01.T01:intergenic
CGACACGAAGAGCAACTGCC+TGG 0.534343 contig515end:+4927 MsG0080048889.01.T01:intergenic
GGAATTAATGGATTTGTCCA+TGG 0.534928 contig515end:-5670 MsG0080048889.01.T01:CDS
ATGAACAGCGGAGCTGGTGC+TGG 0.540199 contig515end:-4458 MsG0080048889.01.T01:CDS
AAACATACCTAGGTCGTCCA+TGG 0.540989 contig515end:-4604 MsG0080048889.01.T01:CDS
AGACTGCAACACAACAGTCC+TGG 0.542128 contig515end:+4571 MsG0080048889.01.T01:intergenic
ACAGGCTTGAGGTCTGAGCT+TGG 0.544567 contig515end:+4641 MsG0080048889.01.T01:intergenic
AGGAGTCACGGTAAAATTGT+CGG 0.546069 contig515end:+4834 MsG0080048889.01.T01:intergenic
ACTTGCTTGGATGGATTAGA+GGG 0.551910 contig515end:-5549 MsG0080048889.01.T01:CDS
ACAGGGGTGGCGTTCATCGA+AGG 0.552352 contig515end:-4326 MsG0080048889.01.T01:CDS
AATGTTGTGGTGGCTCAGGA+CGG 0.552902 contig515end:-5327 MsG0080048889.01.T01:CDS
CAGGCAGTTGCTCTTCGTGT+CGG 0.553277 contig515end:-4926 MsG0080048889.01.T01:CDS
GGGTTCATCTCGGGTCGTCA+TGG 0.556431 contig515end:-5529 MsG0080048889.01.T01:CDS
GTCAACAGTACCAGTAATGT+AGG 0.556514 contig515end:+4814 MsG0080048889.01.T01:intergenic
GTGGTGGCTCAGGACGGGAG+TGG 0.556638 contig515end:-5321 MsG0080048889.01.T01:CDS
GGTAAGAGAGTGACTTGGCC+TGG 0.557837 contig515end:-4431 MsG0080048889.01.T01:CDS
GACGGCCACATTGACCCAGC+TGG 0.558254 contig515end:-4542 MsG0080048889.01.T01:CDS
CTTAACTCATGTATCAGAAG+TGG 0.560141 contig515end:-5856 MsG0080048889.01.T01:CDS
ATGGATTAGAGGGTTCATCT+CGG 0.561420 contig515end:-5539 MsG0080048889.01.T01:CDS
AGCAAGAGAAGATCTAGCCC+TGG 0.572507 contig515end:+5482 MsG0080048889.01.T01:intergenic
AATGTTTGGTTGAAGAACAC+AGG 0.574848 contig515end:-4344 MsG0080048889.01.T01:CDS
TGAGGCCCAAACTCTATCCA+TGG 0.582316 contig515end:+5653 MsG0080048889.01.T01:intergenic
ATTTCTTCCATGGACGACCT+AGG 0.583235 contig515end:+4597 MsG0080048889.01.T01:intergenic
GTGTTGCAGTCTGTCGTGGA+CGG 0.584334 contig515end:-4560 MsG0080048889.01.T01:CDS
TGAACACATTCGAAAGGTCA+TGG 0.584603 contig515end:-5760 MsG0080048889.01.T01:CDS
TCAGACCTCAAGCCTGTGCA+AGG 0.586718 contig515end:-4635 MsG0080048889.01.T01:CDS
GTCCTGAGCCACCACAACAT+TGG 0.587886 contig515end:+5329 MsG0080048889.01.T01:intergenic
GTCACGGTAAAATTGTCGGT+TGG 0.595963 contig515end:+4838 MsG0080048889.01.T01:intergenic
CACAGTATGATGCACACACA+TGG 0.596719 contig515end:-5599 MsG0080048889.01.T01:CDS
GTCCATGGAAGAAATACTCC+AGG 0.599829 contig515end:-4589 MsG0080048889.01.T01:CDS
ATGGATGCAACAATAATCAC+AGG 0.600200 contig515end:-5153 MsG0080048889.01.T01:CDS
TGTTGTGTTGCAGTCTGTCG+TGG 0.601440 contig515end:-4564 MsG0080048889.01.T01:CDS
GTTGCATCTGCACCAGACAA+TGG 0.606959 contig515end:-5273 MsG0080048889.01.T01:CDS
ATTAGGTTCCAAAACACAGC+AGG 0.607658 contig515end:-4962 MsG0080048889.01.T01:CDS
TACCAGTAATGTAGGAGTCA+CGG 0.612605 contig515end:+4822 MsG0080048889.01.T01:intergenic
ACCTTCAAAAGTGCAACTGT+TGG 0.614293 contig515end:-5102 MsG0080048889.01.T01:intron
GGATATAAAGGCCAATGTTG+TGG 0.616059 contig515end:-5340 MsG0080048889.01.T01:CDS
CCCATCCAGCTGGGTCAATG+TGG 0.620863 contig515end:+4537 MsG0080048889.01.T01:intergenic
CTCACATAGATTAGGAGCTG+AGG 0.623504 contig515end:+5902 MsG0080048889.01.T01:intergenic
ATGTTTGGTTGAAGAACACA+GGG 0.623634 contig515end:-4343 MsG0080048889.01.T01:CDS
GGCTCCTTCAAAACATACCT+AGG 0.625221 contig515end:-4614 MsG0080048889.01.T01:CDS
ACAGTAACACAGCTCATCCA+AGG 0.626719 contig515end:-4368 MsG0080048889.01.T01:CDS
ATCCATCCAAGCAAGTTGCA+TGG 0.627349 contig515end:+5556 MsG0080048889.01.T01:intergenic
CACCAGACAATGGTAAGACA+AGG 0.628353 contig515end:-5263 MsG0080048889.01.T01:CDS
AATGTGATGCTAGTGGGTGA+TGG 0.631271 contig515end:-5177 MsG0080048889.01.T01:CDS
ACTGGAAATTGGTAAGCACA+TGG 0.631975 contig515end:+4134 MsG0080048889.01.T01:intergenic
ATCGACTGAACACATTCGAA+AGG 0.632449 contig515end:-5766 MsG0080048889.01.T01:CDS
TATAAAGGCCAATGTTGTGG+TGG 0.634219 contig515end:-5337 MsG0080048889.01.T01:CDS
CATTCGAAAGGTCATGGACA+CGG 0.638521 contig515end:-5754 MsG0080048889.01.T01:CDS
CCGTGTTAATAGCCCTAGAG+AGG 0.641594 contig515end:-5715 MsG0080048889.01.T01:CDS
GTTCCAGAAGAGCAAACTTG+CGG 0.644707 contig515end:-4765 MsG0080048889.01.T01:CDS
TTATGATAGCTACTAAAGAG+AGG 0.651061 contig515end:+5982 MsG0080048889.01.T01:intergenic
AAGACGAATGTGATGCTAGT+GGG 0.651085 contig515end:-5183 MsG0080048889.01.T01:CDS
TTGCAGAAAGTCCTTACTCG+CGG 0.664785 contig515end:+4502 MsG0080048889.01.T01:intergenic
GTACCGGTAAGAGAGTGACT+TGG 0.670308 contig515end:-4436 MsG0080048889.01.T01:CDS
ACATTGCTGAATTGAAGTTG+CGG 0.677232 contig515end:+4673 MsG0080048889.01.T01:intergenic
TTGGTTGAAGAACACAGGGG+TGG 0.685455 contig515end:-4339 MsG0080048889.01.T01:CDS
TCTTCAGGACTTGATCTCCA+GGG 0.690090 contig515end:-5499 MsG0080048889.01.T01:CDS
TTGCCTCCAAAGGCTAACGA+CGG 0.696925 contig515end:-5444 MsG0080048889.01.T01:CDS
AAAGACGAATGTGATGCTAG+TGG 0.714733 contig515end:-5184 MsG0080048889.01.T01:CDS
AAATGCTTTGAATGACTGTG+AGG 0.716518 contig515end:-5691 MsG0080048889.01.T01:CDS
TACGGAGAGTACATGAACAG+CGG 0.722014 contig515end:-4470 MsG0080048889.01.T01:CDS
TTTGGTTAGAGTCAACACTG+AGG 0.792892 contig515end:+5635 MsG0080048889.01.T01:intergenic
TGTTTGGTTGAAGAACACAG+GGG 0.876010 contig515end:-4342 MsG0080048889.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTGATGTATAATT+TGG - contig515end:5013-5032 MsG0080048889.01.T01:intron 10.0%
!! TAATATATAAAACTGGAAAT+TGG + contig515end:5918-5937 MsG0080048889.01.T01:intergenic 15.0%
!! AACAGAAAAATTATGCTTTA+TGG - contig515end:5797-5816 MsG0080048889.01.T01:CDS 20.0%
!! ACTGTTGTAATATATAAAAC+TGG + contig515end:5925-5944 MsG0080048889.01.T01:intergenic 20.0%
!! TATGTTATCTATGTGAAAAA+GGG - contig515end:4798-4817 MsG0080048889.01.T01:CDS 20.0%
!! TTCATTGATGAAAAATTGAA+TGG - contig515end:4618-4637 MsG0080048889.01.T01:CDS 20.0%
! GTATGTTATCTATGTGAAAA+AGG - contig515end:4797-4816 MsG0080048889.01.T01:CDS 25.0%
! GTTGAGATGAGAAATAATAA+GGG + contig515end:4091-4110 MsG0080048889.01.T01:intergenic 25.0%
! TGTTGAGATGAGAAATAATA+AGG + contig515end:4092-4111 MsG0080048889.01.T01:intergenic 25.0%
! TTTCTGCAAACATTGTATTA+CGG - contig515end:5550-5569 MsG0080048889.01.T01:CDS 25.0%
!! AATCCATTCCAAAAACATTT+TGG - contig515end:4028-4047 MsG0080048889.01.T01:three_prime_UTR 25.0%
!! AGGATTAACCAAAATGTTTT+TGG + contig515end:4039-4058 MsG0080048889.01.T01:intergenic 25.0%
!! ATCTCGTTTATGGATTAAAA+AGG + contig515end:5955-5974 MsG0080048889.01.T01:intergenic 25.0%
!! GAATCTGAATCTAAATTTTC+AGG + contig515end:6067-6086 MsG0080048889.01.T01:intergenic 25.0%
!!! TAACCAAAATGTTTTTGGAA+TGG + contig515end:4034-4053 MsG0080048889.01.T01:intergenic 25.0%
!!! TTTTTGATGATATGATAACC+AGG + contig515end:5628-5647 MsG0080048889.01.T01:intergenic 25.0%
AAATCACTGTCATAGAGAAA+TGG + contig515end:4997-5016 MsG0080048889.01.T01:intergenic 30.0%
ATATGAGTGTACTCAATTTG+TGG + contig515end:4239-4258 MsG0080048889.01.T01:intergenic 30.0%
CAAGTTTATTTCCAGACATT+AGG + contig515end:5872-5891 MsG0080048889.01.T01:intergenic 30.0%
GAAAAATTATGCTTTATGGC+AGG - contig515end:5801-5820 MsG0080048889.01.T01:CDS 30.0%
TACAAAGAGAACGTAGAAAT+TGG - contig515end:4825-4844 MsG0080048889.01.T01:CDS 30.0%
TTATGATAGCTACTAAAGAG+AGG + contig515end:4059-4078 MsG0080048889.01.T01:intergenic 30.0%
TTGTTAAAGGGAATTTCTAC+AGG + contig515end:5738-5757 MsG0080048889.01.T01:intergenic 30.0%
! ACTCGTACTTTTAACATAGA+TGG - contig515end:5997-6016 MsG0080048889.01.T01:CDS 30.0%
!!! ATGTTTTTTTGGTTGCTCAT+GGG + contig515end:5307-5326 MsG0080048889.01.T01:intergenic 30.0%
!!! CTGTGAGTCAATGTTATTTT+TGG + contig515end:4424-4443 MsG0080048889.01.T01:intergenic 30.0%
!!! GTTTTTGGAATGGATTTTCT+TGG + contig515end:4024-4043 MsG0080048889.01.T01:intergenic 30.0%
AATGTTTGGTTGAAGAACAC+AGG - contig515end:5694-5713 MsG0080048889.01.T01:CDS 35.0%
ACATTGCTGAATTGAAGTTG+CGG + contig515end:5368-5387 MsG0080048889.01.T01:intergenic 35.0%
ACTAGTCACTAGTATCAGTA+TGG - contig515end:3972-3991 MsG0080048889.01.T01:three_prime_UTR 35.0%
ATCTTCAGTTGGGGATATAA+AGG - contig515end:4686-4705 MsG0080048889.01.T01:CDS 35.0%
ATGGATGCAACAATAATCAC+AGG - contig515end:4885-4904 MsG0080048889.01.T01:CDS 35.0%
ATGTTTGGTTGAAGAACACA+GGG - contig515end:5695-5714 MsG0080048889.01.T01:CDS 35.0%
ATTTGTCCATGGATAGAGTT+TGG - contig515end:4379-4398 MsG0080048889.01.T01:CDS 35.0%
CATGAGCAACCAAAAAAACA+TGG - contig515end:5306-5325 MsG0080048889.01.T01:CDS 35.0%
CTGTCATAGAGAAATGGAAA+TGG + contig515end:4991-5010 MsG0080048889.01.T01:intergenic 35.0%
CTTAACTCATGTATCAGAAG+TGG - contig515end:4182-4201 MsG0080048889.01.T01:three_prime_UTR 35.0%
GAATGACTGTGAGGAATTAA+TGG - contig515end:4356-4375 MsG0080048889.01.T01:CDS 35.0%
GGCAGCTTAAATTTCATAGA+TGG - contig515end:4906-4925 MsG0080048889.01.T01:CDS 35.0%
TATCATCAAAAATGCTGCAG+AGG - contig515end:5636-5655 MsG0080048889.01.T01:CDS 35.0%
TCTTCAACCAAACATTACCT+TGG + contig515end:5690-5709 MsG0080048889.01.T01:intergenic 35.0%
TGTACTCAATTTGTGGTCTT+TGG + contig515end:4232-4251 MsG0080048889.01.T01:intergenic 35.0%
TGTATTGAATGCCTAATGTC+TGG - contig515end:5858-5877 MsG0080048889.01.T01:CDS 35.0%
TTTGTCCATGGATAGAGTTT+GGG - contig515end:4380-4399 MsG0080048889.01.T01:CDS 35.0%
! AAATGCTTTGAATGACTGTG+AGG - contig515end:4347-4366 MsG0080048889.01.T01:CDS 35.0%
! AAGTAAGGATCGAAGACTTT+TGG - contig515end:4662-4681 MsG0080048889.01.T01:CDS 35.0%
! AATTTTGCAGCGGTTAATGA+CGG + contig515end:5149-5168 MsG0080048889.01.T01:intergenic 35.0%
! ATATGTTTCAGACGTTTTGC+AGG - contig515end:5768-5787 MsG0080048889.01.T01:CDS 35.0%
! ATCGTTACACGCTTGTTAAA+GGG + contig515end:5750-5769 MsG0080048889.01.T01:intergenic 35.0%
! CATTCTGAGAATCTCGTTTA+TGG + contig515end:5965-5984 MsG0080048889.01.T01:intergenic 35.0%
! GAAATGCATCAATTTTGCAG+CGG + contig515end:5159-5178 MsG0080048889.01.T01:intergenic 35.0%
! TATCGTTACACGCTTGTTAA+AGG + contig515end:5751-5770 MsG0080048889.01.T01:intergenic 35.0%
!! GGAATTAATGGATTTGTCCA+TGG - contig515end:4368-4387 MsG0080048889.01.T01:CDS 35.0%
!! GGTACTGTTGACTTTATCTT+TGG - contig515end:5235-5254 MsG0080048889.01.T01:CDS 35.0%
!! TCAAAGCATTTTCCTCTCTA+GGG + contig515end:4338-4357 MsG0080048889.01.T01:intergenic 35.0%
!! TTCAAAGCATTTTCCTCTCT+AGG + contig515end:4339-4358 MsG0080048889.01.T01:intergenic 35.0%
!!! ACTTTTGGAATCTTCAGTTG+GGG - contig515end:4677-4696 MsG0080048889.01.T01:CDS 35.0%
!!! AGACTTTTGGAATCTTCAGT+TGG - contig515end:4675-4694 MsG0080048889.01.T01:CDS 35.0%
!!! CATGTTTTTTTGGTTGCTCA+TGG + contig515end:5308-5327 MsG0080048889.01.T01:intergenic 35.0%
!!! GACTTTTGGAATCTTCAGTT+GGG - contig515end:4676-4695 MsG0080048889.01.T01:CDS 35.0%
AAAAACATGGTCACTGCACA+AGG - contig515end:5319-5338 MsG0080048889.01.T01:CDS 40.0%
AAAGACGAATGTGATGCTAG+TGG - contig515end:4854-4873 MsG0080048889.01.T01:CDS 40.0%
AAGACGAATGTGATGCTAGT+GGG - contig515end:4855-4874 MsG0080048889.01.T01:CDS 40.0%
ACTGGAAATTGGTAAGCACA+TGG + contig515end:5907-5926 MsG0080048889.01.T01:intergenic 40.0%
AGAGCATGCTCACATAGATT+AGG + contig515end:4147-4166 MsG0080048889.01.T01:intergenic 40.0%
AGCTCATCCAAGGTAATGTT+TGG - contig515end:5680-5699 MsG0080048889.01.T01:CDS 40.0%
AGGAGTCACGGTAAAATTGT+CGG + contig515end:5207-5226 MsG0080048889.01.T01:intergenic 40.0%
ATCGACTGAACACATTCGAA+AGG - contig515end:4272-4291 MsG0080048889.01.T01:three_prime_UTR 40.0%
ATTAGGTTCCAAAACACAGC+AGG - contig515end:5076-5095 MsG0080048889.01.T01:intron 40.0%
CATGTATCAGAAGTGGTTCA+AGG - contig515end:4189-4208 MsG0080048889.01.T01:three_prime_UTR 40.0%
CGAGATTCTCAGAATGATGA+AGG - contig515end:5969-5988 MsG0080048889.01.T01:CDS 40.0%
CTGATACTAGTGACTAGTAC+TGG + contig515end:3970-3989 MsG0080048889.01.T01:intergenic 40.0%
GAGAGATTGAAGAAGGAGAT+AGG + contig515end:4117-4136 MsG0080048889.01.T01:intergenic 40.0%
GCTTGTCTAGCAAAGATTGT+TGG + contig515end:4002-4021 MsG0080048889.01.T01:intergenic 40.0%
GGATATAAAGGCCAATGTTG+TGG - contig515end:4698-4717 MsG0080048889.01.T01:CDS 40.0%
GGTTTATAGCTCAGGACATT+AGG - contig515end:5059-5078 MsG0080048889.01.T01:intron 40.0%
GTCAACAGTACCAGTAATGT+AGG + contig515end:5227-5246 MsG0080048889.01.T01:intergenic 40.0%
TACCAGTAATGTAGGAGTCA+CGG + contig515end:5219-5238 MsG0080048889.01.T01:intergenic 40.0%
TACCTTGTCTTACCATTGTC+TGG + contig515end:4780-4799 MsG0080048889.01.T01:intergenic 40.0%
TATAAAGGCCAATGTTGTGG+TGG - contig515end:4701-4720 MsG0080048889.01.T01:CDS 40.0%
TCGAATGTGTTCAGTCGATT+TGG + contig515end:4271-4290 MsG0080048889.01.T01:intergenic 40.0%
TGAACACATTCGAAAGGTCA+TGG - contig515end:4278-4297 MsG0080048889.01.T01:three_prime_UTR 40.0%
TGTTTGGTTGAAGAACACAG+GGG - contig515end:5696-5715 MsG0080048889.01.T01:CDS 40.0%
TTTGGTTAGAGTCAACACTG+AGG + contig515end:4406-4425 MsG0080048889.01.T01:intergenic 40.0%
! ACCAACAGTTGCACTTTTGA+AGG + contig515end:4940-4959 MsG0080048889.01.T01:intergenic 40.0%
! ACCTTCAAAAGTGCAACTGT+TGG - contig515end:4936-4955 MsG0080048889.01.T01:CDS 40.0%
! GAATGGCGATTTTCCATCTT+GGG - contig515end:4635-4654 MsG0080048889.01.T01:CDS 40.0%
! TGAATGGCGATTTTCCATCT+TGG - contig515end:4634-4653 MsG0080048889.01.T01:CDS 40.0%
!! AACAGTTGCACTTTTGAAGG+TGG + contig515end:4937-4956 MsG0080048889.01.T01:intergenic 40.0%
!! AACTTGCTTGGATGGATTAG+AGG - contig515end:4488-4507 MsG0080048889.01.T01:CDS 40.0%
!! ACGACCTAGGTATGTTTTGA+AGG + contig515end:5431-5450 MsG0080048889.01.T01:intergenic 40.0%
!! ACTTGCTTGGATGGATTAGA+GGG - contig515end:4489-4508 MsG0080048889.01.T01:CDS 40.0%
!! ATGGATTAGAGGGTTCATCT+CGG - contig515end:4499-4518 MsG0080048889.01.T01:CDS 40.0%
!!! GTGCAGTGACCATGTTTTTT+TGG + contig515end:5318-5337 MsG0080048889.01.T01:intergenic 40.0%
!!! TTTGGTTTTGTAGCTGCTGT+TGG - contig515end:5031-5050 MsG0080048889.01.T01:intron 40.0%
AAACATACCTAGGTCGTCCA+TGG - contig515end:5434-5453 MsG0080048889.01.T01:CDS 45.0%
ACAGTAACACAGCTCATCCA+AGG - contig515end:5670-5689 MsG0080048889.01.T01:CDS 45.0%
AGCTGAGGAGAGATTGAAGA+AGG + contig515end:4124-4143 MsG0080048889.01.T01:intergenic 45.0%
ATCCATCCAAGCAAGTTGCA+TGG + contig515end:4485-4504 MsG0080048889.01.T01:intergenic 45.0%
ATCTTCAGGACTTGATCTCC+AGG - contig515end:4538-4557 MsG0080048889.01.T01:CDS 45.0%
ATTTCTTCCATGGACGACCT+AGG + contig515end:5444-5463 MsG0080048889.01.T01:intergenic 45.0%
CACAGTATGATGCACACACA+TGG - contig515end:4439-4458 MsG0080048889.01.T01:CDS 45.0%
CACCAGACAATGGTAAGACA+AGG - contig515end:4775-4794 MsG0080048889.01.T01:CDS 45.0%
CATTCGAAAGGTCATGGACA+CGG - contig515end:4284-4303 MsG0080048889.01.T01:three_prime_UTR 45.0%
CGTCATGGAAAGTGATCTTC+AGG - contig515end:4524-4543 MsG0080048889.01.T01:CDS 45.0%
CTCACATAGATTAGGAGCTG+AGG + contig515end:4139-4158 MsG0080048889.01.T01:intergenic 45.0%
GAATTGAAGTTGCGGTGTTC+TGG + contig515end:5360-5379 MsG0080048889.01.T01:intergenic 45.0%
GGCTCCTTCAAAACATACCT+AGG - contig515end:5424-5443 MsG0080048889.01.T01:CDS 45.0%
GTCACGGTAAAATTGTCGGT+TGG + contig515end:5203-5222 MsG0080048889.01.T01:intergenic 45.0%
GTCCATGGAAGAAATACTCC+AGG - contig515end:5449-5468 MsG0080048889.01.T01:CDS 45.0%
GTTCCAGAAGAGCAAACTTG+CGG - contig515end:5273-5292 MsG0080048889.01.T01:CDS 45.0%
TACCGTGACTCCTACATTAC+TGG - contig515end:5214-5233 MsG0080048889.01.T01:CDS 45.0%
TCCATCTTGGGTGACAAGTA+AGG - contig515end:4647-4666 MsG0080048889.01.T01:CDS 45.0%
TCCTTACTTGTCACCCAAGA+TGG + contig515end:4651-4670 MsG0080048889.01.T01:intergenic 45.0%
TCTTCAGGACTTGATCTCCA+GGG - contig515end:4539-4558 MsG0080048889.01.T01:CDS 45.0%
TTGCAGAAAGTCCTTACTCG+CGG + contig515end:5539-5558 MsG0080048889.01.T01:intergenic 45.0%
TTGTAGCTGCTGTTGGAGAT+GGG - contig515end:5038-5057 MsG0080048889.01.T01:intron 45.0%
TTTGGTTGCTCATGGGCTTT+CGG + contig515end:5300-5319 MsG0080048889.01.T01:intergenic 45.0%
TTTGTAGCTGCTGTTGGAGA+TGG - contig515end:5037-5056 MsG0080048889.01.T01:intron 45.0%
! AACCATGCAACTTGCTTGGA+TGG - contig515end:4480-4499 MsG0080048889.01.T01:CDS 45.0%
! AATGTGATGCTAGTGGGTGA+TGG - contig515end:4861-4880 MsG0080048889.01.T01:CDS 45.0%
! CACTAACCATGCAACTTGCT+TGG - contig515end:4476-4495 MsG0080048889.01.T01:CDS 45.0%
! GTCCTGGAGTATTTCTTCCA+TGG + contig515end:5454-5473 MsG0080048889.01.T01:intergenic 45.0%
! TACGGAGAGTACATGAACAG+CGG - contig515end:5568-5587 MsG0080048889.01.T01:CDS 45.0%
! TGGAGATGGGTTTATAGCTC+AGG - contig515end:5051-5070 MsG0080048889.01.T01:intron 45.0%
! TGGATTAGAGGGTTCATCTC+GGG - contig515end:4500-4519 MsG0080048889.01.T01:CDS 45.0%
! TGTTTCTGTCTTGCCTCCAA+AGG - contig515end:4584-4603 MsG0080048889.01.T01:CDS 45.0%
!! AAGTTGCGGTGTTCTGGTTT+GGG + contig515end:5354-5373 MsG0080048889.01.T01:intergenic 45.0%
!! ATGAATCCGTCGTTAGCCTT+TGG + contig515end:4603-4622 MsG0080048889.01.T01:intergenic 45.0%
!! CCTCTCTAGGGCTATTAACA+CGG + contig515end:4326-4345 MsG0080048889.01.T01:intergenic 45.0%
AATGTTGTGGTGGCTCAGGA+CGG - contig515end:4711-4730 MsG0080048889.01.T01:CDS 50.0%
AGACTGCAACACAACAGTCC+TGG + contig515end:5470-5489 MsG0080048889.01.T01:intergenic 50.0%
AGCAAGAGAAGATCTAGCCC+TGG + contig515end:4559-4578 MsG0080048889.01.T01:intergenic 50.0%
AGGCCAAGTCACTCTCTTAC+CGG + contig515end:5608-5627 MsG0080048889.01.T01:intergenic 50.0%
CCGTGTTAATAGCCCTAGAG+AGG - contig515end:4323-4342 MsG0080048889.01.T01:CDS 50.0%
GTTGCATCTGCACCAGACAA+TGG - contig515end:4765-4784 MsG0080048889.01.T01:CDS 50.0%
TGAGGCCCAAACTCTATCCA+TGG + contig515end:4388-4407 MsG0080048889.01.T01:intergenic 50.0%
TGTTGTGTTGCAGTCTGTCG+TGG - contig515end:5474-5493 MsG0080048889.01.T01:CDS 50.0%
TTGCCTCCAAAGGCTAACGA+CGG - contig515end:4594-4613 MsG0080048889.01.T01:CDS 50.0%
TTGGTTGAAGAACACAGGGG+TGG - contig515end:5699-5718 MsG0080048889.01.T01:CDS 50.0%
TTGGTTGCTCATGGGCTTTC+GGG + contig515end:5299-5318 MsG0080048889.01.T01:intergenic 50.0%
! GAAGTTGCGGTGTTCTGGTT+TGG + contig515end:5355-5374 MsG0080048889.01.T01:intergenic 50.0%
! GATGCTAGTGGGTGATGGTA+TGG - contig515end:4866-4885 MsG0080048889.01.T01:CDS 50.0%
! GTACCGGTAAGAGAGTGACT+TGG - contig515end:5602-5621 MsG0080048889.01.T01:CDS 50.0%
!! AATCCGTCGTTAGCCTTTGG+AGG + contig515end:4600-4619 MsG0080048889.01.T01:intergenic 50.0%
!!! GTTTTGAAGGAGCCTTGCAC+AGG + contig515end:5418-5437 MsG0080048889.01.T01:intergenic 50.0%
ACAGGCTTGAGGTCTGAGCT+TGG + contig515end:5400-5419 MsG0080048889.01.T01:intergenic 55.0%
ATGTTGTGGTGGCTCAGGAC+GGG - contig515end:4712-4731 MsG0080048889.01.T01:CDS 55.0%
CAACTGCCTGGTGCTTCTCT+GGG + contig515end:5102-5121 MsG0080048889.01.T01:intergenic 55.0%
CAGGCAGTTGCTCTTCGTGT+CGG - contig515end:5112-5131 MsG0080048889.01.T01:CDS 55.0%
CCACATTGACCCAGCTGGAT+GGG - contig515end:5501-5520 MsG0080048889.01.T01:CDS 55.0%
GAGTACATGAACAGCGGAGC+TGG - contig515end:5574-5593 MsG0080048889.01.T01:CDS 55.0%
GTCCTGAGCCACCACAACAT+TGG + contig515end:4712-4731 MsG0080048889.01.T01:intergenic 55.0%
GTGTTGCAGTCTGTCGTGGA+CGG - contig515end:5478-5497 MsG0080048889.01.T01:CDS 55.0%
TCAGACCTCAAGCCTGTGCA+AGG - contig515end:5403-5422 MsG0080048889.01.T01:CDS 55.0%
TGAATGGGATGCCGCGAGTA+AGG - contig515end:5525-5544 MsG0080048889.01.T01:CDS 55.0%
! GGTAAGAGAGTGACTTGGCC+TGG - contig515end:5607-5626 MsG0080048889.01.T01:CDS 55.0%
! TCTCTGGGCCTGCTGTGTTT+TGG + contig515end:5087-5106 MsG0080048889.01.T01:intergenic 55.0%
ACAGGGGTGGCGTTCATCGA+AGG - contig515end:5712-5731 MsG0080048889.01.T01:CDS 60.0%
AGGAGCCTTGCACAGGCTTG+AGG + contig515end:5411-5430 MsG0080048889.01.T01:intergenic 60.0%
ATGAACAGCGGAGCTGGTGC+TGG - contig515end:5580-5599 MsG0080048889.01.T01:CDS 60.0%
CCCATCCAGCTGGGTCAATG+TGG + contig515end:5504-5523 MsG0080048889.01.T01:intergenic 60.0%
CCCATTCAGCCCATCCAGCT+GGG + contig515end:5513-5532 MsG0080048889.01.T01:intergenic 60.0%
CGACACGAAGAGCAACTGCC+TGG + contig515end:5114-5133 MsG0080048889.01.T01:intergenic 60.0%
GCAACTGCCTGGTGCTTCTC+TGG + contig515end:5103-5122 MsG0080048889.01.T01:intergenic 60.0%
GCCACATTGACCCAGCTGGA+TGG - contig515end:5500-5519 MsG0080048889.01.T01:CDS 60.0%
GGCCAATGTTGTGGTGGCTC+AGG - contig515end:4707-4726 MsG0080048889.01.T01:CDS 60.0%
GGGTTCATCTCGGGTCGTCA+TGG - contig515end:4509-4528 MsG0080048889.01.T01:CDS 60.0%
TCCCATTCAGCCCATCCAGC+TGG + contig515end:5514-5533 MsG0080048889.01.T01:intergenic 60.0%
! GGGCCGCAAGTTTGCTCTTC+TGG + contig515end:5279-5298 MsG0080048889.01.T01:intergenic 60.0%
!! ACCCAGCTGGATGGGCTGAA+TGG - contig515end:5509-5528 MsG0080048889.01.T01:CDS 60.0%
!! CCCAGCTGGATGGGCTGAAT+GGG - contig515end:5510-5529 MsG0080048889.01.T01:CDS 60.0%
GACGGCCACATTGACCCAGC+TGG - contig515end:5496-5515 MsG0080048889.01.T01:CDS 65.0%
!! AGCAGGCCCAGAGAAGCACC+AGG - contig515end:5093-5112 MsG0080048889.01.T01:intron 65.0%
!! AGCGGAGCTGGTGCTGGTAC+CGG - contig515end:5586-5605 MsG0080048889.01.T01:CDS 65.0%
GTGGTGGCTCAGGACGGGAG+TGG - contig515end:4717-4736 MsG0080048889.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
contig515end gene 3956 6104 3956 ID=MsG0080048889.01;Name=MsG0080048889.01
contig515end mRNA 3956 6104 3956 ID=MsG0080048889.01.T01;Parent=MsG0080048889.01;Name=MsG0080048889.01.T01;_AED=0.49;_eAED=0.49;_QI=35|1|1|1|1|1|2|363|554
contig515end exon 3956 5016 3956 ID=MsG0080048889.01.T01:exon:16763;Parent=MsG0080048889.01.T01
contig515end exon 5103 6104 5103 ID=MsG0080048889.01.T01:exon:16762;Parent=MsG0080048889.01.T01
contig515end five_prime_UTR 6070 6104 6070 ID=MsG0080048889.01.T01:five_prime_utr;Parent=MsG0080048889.01.T01
contig515end CDS 5103 6069 5103 ID=MsG0080048889.01.T01:cds;Parent=MsG0080048889.01.T01
contig515end CDS 4319 5016 4319 ID=MsG0080048889.01.T01:cds;Parent=MsG0080048889.01.T01
contig515end three_prime_UTR 3956 4318 3956 ID=MsG0080048889.01.T01:three_prime_utr;Parent=MsG0080048889.01.T01
Gene Sequence

>MsG0080048889.01.T01

ATGGCTAGCCAACAATCTTTGCTAGACAAGCCAAGAAAATCCATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGTAGCTATCATAAGTTCATCAGCCCTTATTATTTCTCATCTCAACAAACCTATCTCCTTCTTCAATCTCTCCTCAGCTCCTAATCTATGTGAGCATGCTCTTGATACAAAATCATGCTTAACTCATGTATCAGAAGTGGTTCAAGGTTCAACTTTGTCTAATACCAAAGACCACAAATTGAGTACACTCATATCGTTGTTAACCAAATCGACTGAACACATTCGAAAGGTCATGGACACGGCTAATGTTATCAAACGCCGTGTTAATAGCCCTAGAGAGGAAAATGCTTTGAATGACTGTGAGGAATTAATGGATTTGTCCATGGATAGAGTTTGGGCCTCAGTGTTGACTCTAACCAAAAATAACATTGACTCACAGTATGATGCACACACATGGTTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAGGGTTCATCTCGGGTCGTCATGGAAAGTGATCTTCAGGACTTGATCTCCAGGGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTGCCTCCAAAGGCTAACGACGGATTCATTGATGAAAAATTGAATGGCGATTTTCCATCTTGGGTGACAAGTAAGGATCGAAGACTTTTGGAATCTTCAGTTGGGGATATAAAGGCCAATGTTGTGGTGGCTCAGGACGGGAGTGGCAAGTTCAAGACTGTTGCTCAAGCTGTTGCATCTGCACCAGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAACGTAGAAATTGGCAAGAAAAAGACGAATGTGATGCTAGTGGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATTTCATAGATGGAACAACCACCTTCAAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTTATAGCTCAGGACATTAGGTTCCAAAACACAGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGTGTCGGCGCTGATCAATCCGTCATTAACCGCTGCAAAATTGATGCATTTCAAGACACTCTCTACGCACATTCCAACCGACAATTTTACCGTGACTCCTACATTACTGGTACTGTTGACTTTATCTTTGGAAACGCAGCTGTTGTGTTCCAGAAGAGCAAACTTGCGGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTCACTGCACAAGGTCGCGAAGACCCAAACCAGAACACCGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCTCCTTCAAAACATACCTAGGTCGTCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAGTCTGTCGTGGACGGCCACATTGACCCAGCTGGATGGGCTGAATGGGATGCCGCGAGTAAGGACTTTCTGCAAACATTGTATTACGGAGAGTACATGAACAGCGGAGCTGGTGCTGGTACCGGTAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAAATGCTGCAGAGGCTAGCAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCGTTCATCGAAGGCCTGTAG

Protein sequence

>MsG0080048889.01.T01

MASQQSLLDKPRKSIPKTFWLILSLVAIISSSALIISHLNKPISFFNLSSAPNLCEHALDTKSCLTHVSEVVQGSTLSNTKDHKLSTLISLLTKSTEHIRKVMDTANVIKRRVNSPREENALNDCEELMDLSMDRVWASVLTLTKNNIDSQYDAHTWLSSVLTNHATCLDGLEGSSRVVMESDLQDLISRARSSLAVLVSVLPPKANDGFIDEKLNGDFPSWVTSKDRRLLESSVGDIKANVVVAQDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSKLAARKPMSNQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLKPVQGSFKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKNAAEASKFTVTQLIQGNVWLKNTGVAFIEGL*