AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000985.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000985.01.T01 MTR_1g028360 90.774 336 19 1 1 324 9 344 0.0 587
MsG0180000985.01.T01 MTR_3g091090 77.273 330 57 3 9 322 11 338 9.27e-174 487
MsG0180000985.01.T01 MTR_5g034470 68.592 277 82 4 49 322 49 323 7.79e-143 408
MsG0180000985.01.T01 MTR_5g034470 68.953 277 81 4 49 322 49 323 1.79e-142 407
MsG0180000985.01.T01 MTR_8g063940 65.000 280 95 3 45 322 44 322 3.26e-137 393
MsG0180000985.01.T01 MTR_3g078190 55.755 278 97 6 52 322 41 299 1.52e-97 292
MsG0180000985.01.T01 MTR_5g006140 32.174 230 147 6 71 295 42 267 3.09e-31 120
MsG0180000985.01.T01 MTR_5g006140 32.273 220 142 5 71 285 42 259 7.05e-31 118
MsG0180000985.01.T01 MTR_1g015300 29.885 261 175 6 68 322 46 304 1.54e-30 119
MsG0180000985.01.T01 MTR_3g104960 28.634 227 146 6 68 289 48 263 1.33e-20 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000985.01.T01 AT5G53120 74.096 332 68 2 9 324 11 340 3.43e-168 473
MsG0180000985.01.T01 AT5G53120 74.096 332 68 2 9 324 11 340 3.43e-168 473
MsG0180000985.01.T01 AT5G53120 74.096 332 68 2 9 324 11 340 3.43e-168 473
MsG0180000985.01.T01 AT5G53120 74.096 332 68 2 9 324 11 340 3.43e-168 473
MsG0180000985.01.T01 AT5G53120 74.096 332 68 2 9 324 11 340 3.43e-168 473
MsG0180000985.01.T01 AT5G53120 74.096 332 68 2 9 324 28 357 1.08e-167 472
MsG0180000985.01.T01 AT5G53120 66.295 359 76 4 9 324 11 367 1.89e-163 462
MsG0180000985.01.T01 AT1G23820 65.827 278 91 3 47 322 39 314 4.80e-139 398
MsG0180000985.01.T01 AT1G70310 65.468 278 94 2 47 322 43 320 5.11e-136 390
MsG0180000985.01.T01 AT1G23820 67.382 233 74 2 47 277 83 315 2.49e-118 345
MsG0180000985.01.T01 AT5G19530 30.222 225 150 5 68 287 40 262 3.49e-31 120
MsG0180000985.01.T01 AT5G19530 30.222 225 150 5 68 287 47 269 4.41e-31 120

Find 65 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCATTCTACTGTTGTTTC+AGG 0.175122 1:+14082449 MsG0180000985.01.T01:CDS
TGTTGCTTCTACAAAGTTAA+AGG 0.190017 1:+14085139 MsG0180000985.01.T01:CDS
GTAGAAGCAACAAATATCTT+TGG 0.256752 1:-14085128 None:intergenic
ATCAGAGTTCCAAGAGGTTT+TGG 0.268721 1:+14083365 MsG0180000985.01.T01:CDS
GTGGAGATGGTGGAGTTCTA+AGG 0.279701 1:+14083770 MsG0180000985.01.T01:CDS
TATTTGTGAGATAGATAAAA+TGG 0.298775 1:+14083828 MsG0180000985.01.T01:CDS
TAGAAGCAACAAATATCTTT+GGG 0.353717 1:-14085127 None:intergenic
ATAGCATCATACTTTCCTTC+AGG 0.354964 1:-14084181 None:intergenic
TTAGTTGTTGGTGGTGGAGA+TGG 0.363986 1:+14083757 MsG0180000985.01.T01:CDS
GATTTGCAGTCATTAACATA+TGG 0.373520 1:+14083470 MsG0180000985.01.T01:intron
AGCAAATGTTTGTTGACAAA+TGG 0.374139 1:-14084838 None:intergenic
AAGGTTTCAGTCCCTGAACT+TGG 0.378303 1:+14082419 MsG0180000985.01.T01:CDS
TTGGCATGCAGTGGTGTGAT+AGG 0.401422 1:+14084968 MsG0180000985.01.T01:intron
AATTCCTTCTTGTTGTTTGA+AGG 0.410076 1:+14082394 MsG0180000985.01.T01:CDS
CAATAATACCTTGGATATGT+TGG 0.420710 1:-14084888 None:intergenic
TGGTGGAGTGCTATGTAATA+TGG 0.433597 1:+14084770 MsG0180000985.01.T01:CDS
GGGAAAGTGCTTGTACTTGA+TGG 0.443480 1:+14083491 MsG0180000985.01.T01:CDS
ATCGGGTTTACAAAATCAAC+TGG 0.444824 1:-14085019 None:intergenic
TACAAAGTTAAAGGCGTGTT+CGG 0.447818 1:+14085148 MsG0180000985.01.T01:CDS
TTCTTGTTGTTTGAAGGCTA+AGG 0.458947 1:+14082400 MsG0180000985.01.T01:CDS
ATTTGCAGTCATTAACATAT+GGG 0.463554 1:+14083471 MsG0180000985.01.T01:intron
TGGTGGTTTAGGTCCTGCTC+AGG 0.476181 1:+14084698 MsG0180000985.01.T01:intron
GTTGTTGGTGGTGGAGATGG+TGG 0.478081 1:+14083760 MsG0180000985.01.T01:CDS
TCACAATCTCAATCTTCCTC+TGG 0.481101 1:+14082479 MsG0180000985.01.T01:CDS
AGCGGACTTGAGGTCGGAAC+AGG 0.483195 1:+14082338 MsG0180000985.01.T01:CDS
GCTTCATACTCATCTTATTG+AGG 0.483645 1:+14084806 MsG0180000985.01.T01:CDS
AGGTTTCAGTCCCTGAACTT+GGG 0.487273 1:+14082420 MsG0180000985.01.T01:CDS
TTCTCTACAAGTTCCTGAGC+AGG 0.489434 1:-14084711 None:intergenic
ATTCTACTGTTGTTTCAGGA+TGG 0.504288 1:+14082453 MsG0180000985.01.T01:CDS
CTTTATCTTATGCTCAAAAG+AGG 0.509069 1:+14084991 MsG0180000985.01.T01:CDS
GGAGATGAGCTATCATCTCT+TGG 0.512697 1:-14083550 None:intergenic
TCAAATCCAACAGCTAACTC+TGG 0.513813 1:-14083975 None:intergenic
TTTATCTTATGCTCAAAAGA+GGG 0.518661 1:+14084992 MsG0180000985.01.T01:CDS
TTGCTTCTGTACGTTATGCA+TGG 0.518868 1:+14084856 MsG0180000985.01.T01:CDS
CTAAGCACATAAGAGAACTT+AGG 0.523416 1:+14085071 MsG0180000985.01.T01:CDS
CCAACATGCAGGTGTACTCT+AGG 0.528257 1:-14084002 None:intergenic
TGGAGATGGTGGAGTTCTAA+GGG 0.538304 1:+14083771 MsG0180000985.01.T01:CDS
GGTTTCAGTCCCTGAACTTG+GGG 0.539917 1:+14082421 MsG0180000985.01.T01:CDS
TTTCTTAGATGCACTCCTGA+AGG 0.543593 1:+14084166 MsG0180000985.01.T01:CDS
GTAATATGGCAGAAAGTATG+TGG 0.561543 1:+14084784 MsG0180000985.01.T01:CDS
GAACATTATGGACAATATCT+CGG 0.569227 1:+14082304 None:intergenic
GGGACTGAATTGAGCAAAGT+GGG 0.574722 1:-14083571 None:intergenic
GTTGATTCCTCTGACCCAGT+TGG 0.594913 1:+14084208 MsG0180000985.01.T01:CDS
AAAACGGTGTAGCGGACTTG+AGG 0.599550 1:+14082328 MsG0180000985.01.T01:CDS
AGATACCATCACCAACATGC+AGG 0.601847 1:-14084013 None:intergenic
AGAACTTAGGTTCTATAACT+CGG 0.610249 1:+14085084 MsG0180000985.01.T01:CDS
TGACATACCAACTGGGTCAG+AGG 0.613200 1:-14084215 None:intergenic
CGGTGTAGCGGACTTGAGGT+CGG 0.621716 1:+14082332 MsG0180000985.01.T01:CDS
GGGGACTGAATTGAGCAAAG+TGG 0.627662 1:-14083572 None:intergenic
TTAGCCTTCAAACAACAAGA+AGG 0.633703 1:-14082398 None:intergenic
TTATCTTATGCTCAAAAGAG+GGG 0.634919 1:+14084993 MsG0180000985.01.T01:CDS
AATTGTTCAGTTGACTGAGA+AGG 0.638902 1:+14083514 MsG0180000985.01.T01:CDS
CCTAGAGTACACCTGCATGT+TGG 0.640270 1:+14084002 MsG0180000985.01.T01:CDS
ATATTACATAGCACTCCACC+AGG 0.645573 1:-14084768 None:intergenic
GAATTGTGTAGATATAGAGA+AGG 0.649083 1:+14082370 MsG0180000985.01.T01:CDS
CTAGTGTTCCAACATATCCA+AGG 0.650334 1:+14084880 MsG0180000985.01.T01:CDS
GTACACCTGCATGTTGGTGA+TGG 0.658823 1:+14084008 MsG0180000985.01.T01:CDS
GTTTCAGTCCCTGAACTTGG+GGG 0.662774 1:+14082422 MsG0180000985.01.T01:CDS
GCTAAGGCATTAAGACCTGG+TGG 0.666093 1:+14084753 MsG0180000985.01.T01:CDS
TTAGCTAAGGCATTAAGACC+TGG 0.682138 1:+14084750 MsG0180000985.01.T01:CDS
GGGTTTACAAAATCAACTGG+TGG 0.688551 1:-14085016 None:intergenic
CATGAGTTACAGAACTGTGG+CGG 0.698296 1:-14083801 None:intergenic
ACTTAGGTTCTATAACTCGG+AGG 0.698666 1:+14085087 MsG0180000985.01.T01:CDS
CAACATGAGTTACAGAACTG+TGG 0.702544 1:-14083804 None:intergenic
AATAAAGTGACATACCAACT+GGG 0.707787 1:-14084222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAATCAACTATA+TGG - Chr1:14083898-14083917 None:intergenic 10.0%
!! ATAAGTATTTATTATGCAAT+TGG - Chr1:14082652-14082671 None:intergenic 15.0%
!! TAGTATATTAAAAAAACCAA+AGG + Chr1:14084461-14084480 MsG0180000985.01.T01:intron 15.0%
!!! CTATTTTCTCATATTATTTT+CGG + Chr1:14084582-14084601 MsG0180000985.01.T01:intron 15.0%
!!! GAATTGTTTGTAATAATTTT+TGG + Chr1:14082751-14082770 MsG0180000985.01.T01:intron 15.0%
!! AAAGAATAGTTGTAAAAAAG+AGG - Chr1:14083225-14083244 None:intergenic 20.0%
!! AAGAATAGTTGTAAAAAAGA+GGG - Chr1:14083224-14083243 None:intergenic 20.0%
!! ACAAACATATAGTATAGATT+TGG - Chr1:14082989-14083008 None:intergenic 20.0%
!! ATCATTAATAAAGGATATGT+TGG - Chr1:14084922-14084941 None:intergenic 20.0%
!! CAAACATATAGTATAGATTT+GGG - Chr1:14082988-14083007 None:intergenic 20.0%
!! CAAAGAAATATTATATCCTA+AGG + Chr1:14084325-14084344 MsG0180000985.01.T01:intron 20.0%
!! TAACAACATTAAAACCATTT+AGG - Chr1:14083728-14083747 None:intergenic 20.0%
!! TAAGATGCAATCATTAATAA+AGG - Chr1:14084931-14084950 None:intergenic 20.0%
!! TATTAACAAAAAGATACAAG+AGG - Chr1:14084261-14084280 None:intergenic 20.0%
!! TATTTGTGAGATAGATAAAA+TGG + Chr1:14083828-14083847 MsG0180000985.01.T01:CDS 20.0%
!!! AAAAATAACATAACCGTTTT+GGG - Chr1:14083596-14083615 None:intergenic 20.0%
!!! CATTTAGGATATGTATAAAA+CGG - Chr1:14083713-14083732 None:intergenic 20.0%
!!! CTTTTCTAACTACTAAAATT+TGG + Chr1:14083187-14083206 MsG0180000985.01.T01:intron 20.0%
!!! GAAAATAGAATAATTTGCTT+TGG - Chr1:14084570-14084589 None:intergenic 20.0%
!!! TTAGTGATAACATTTTCTTA+GGG - Chr1:14082564-14082583 None:intergenic 20.0%
!!! TTTAGTGATAACATTTTCTT+AGG - Chr1:14082565-14082584 None:intergenic 20.0%
!!! TTTCTGTCATTTTTTAAAAC+AGG + Chr1:14082585-14082604 MsG0180000985.01.T01:intron 20.0%
!!! TTTGTAATAATTTTTGGCTA+AGG + Chr1:14082757-14082776 MsG0180000985.01.T01:intron 20.0%
! AAGCAAAATTGTATTACCTT+AGG - Chr1:14084344-14084363 None:intergenic 25.0%
! ACCAAAATCATCAAAACTAA+CGG - Chr1:14083287-14083306 None:intergenic 25.0%
! AGTAGAAAAAATATTGTACG+AGG + Chr1:14083338-14083357 MsG0180000985.01.T01:CDS 25.0%
! ATTTGCAGTCATTAACATAT+GGG + Chr1:14083471-14083490 MsG0180000985.01.T01:intron 25.0%
! TAGAAGCAACAAATATCTTT+GGG - Chr1:14085130-14085149 None:intergenic 25.0%
! TCAAAAACTACAATATCCTA+AGG + Chr1:14084372-14084391 MsG0180000985.01.T01:intron 25.0%
! TCTGTTATTATCTCTTTCTT+TGG + Chr1:14084678-14084697 MsG0180000985.01.T01:intron 25.0%
! TTAGCTAATGTCACAAAAAA+TGG - Chr1:14084738-14084757 None:intergenic 25.0%
! TTGATTAACACCAATTGTTA+TGG + Chr1:14083448-14083467 MsG0180000985.01.T01:intron 25.0%
! TTGGATCGATTAAAATCAAA+CGG - Chr1:14083689-14083708 None:intergenic 25.0%
! TTTATCTTATGCTCAAAAGA+GGG + Chr1:14084992-14085011 MsG0180000985.01.T01:CDS 25.0%
! TTTATTTCAACAATCCAATG+TGG + Chr1:14082616-14082635 MsG0180000985.01.T01:intron 25.0%
!! AAAATAACATAACCGTTTTG+GGG - Chr1:14083595-14083614 None:intergenic 25.0%
!! CAAAAATAACATAACCGTTT+TGG - Chr1:14083597-14083616 None:intergenic 25.0%
!! CGTTTTATACATATCCTAAA+TGG + Chr1:14083711-14083730 MsG0180000985.01.T01:intron 25.0%
!! TAGTGATAACATTTTCTTAG+GGG - Chr1:14082563-14082582 None:intergenic 25.0%
!!! ATTTTTTGTGACATTAGCTA+AGG + Chr1:14084737-14084756 MsG0180000985.01.T01:CDS 25.0%
!!! CATTCTCTAAAACAATTCAA+TGG - Chr1:14082698-14082717 None:intergenic 25.0%
!!! TAATAATTTTTGGCTAAGGA+TGG + Chr1:14082761-14082780 MsG0180000985.01.T01:intron 25.0%
!!! TGATTTTGGTTTCTATCATT+AGG + Chr1:14083297-14083316 MsG0180000985.01.T01:intron 25.0%
!!! TGTTTTAGAGAATGTAGAAT+GGG + Chr1:14082704-14082723 MsG0180000985.01.T01:intron 25.0%
!!! TTGTTTTAGAGAATGTAGAA+TGG + Chr1:14082703-14082722 MsG0180000985.01.T01:intron 25.0%
AACCCTATTGAAAAAGTTGA+AGG + Chr1:14085043-14085062 MsG0180000985.01.T01:CDS 30.0%
AATAAAGTGACATACCAACT+GGG - Chr1:14084225-14084244 None:intergenic 30.0%
AGAACTTAGGTTCTATAACT+CGG + Chr1:14085084-14085103 MsG0180000985.01.T01:CDS 30.0%
AGGATATGTATAAAACGGTT+TGG - Chr1:14083708-14083727 None:intergenic 30.0%
CAATAATACCTTGGATATGT+TGG - Chr1:14084891-14084910 None:intergenic 30.0%
CAATATCCAAACAAGATCAT+CGG - Chr1:14082838-14082857 None:intergenic 30.0%
CAATTGATCATTCATTCACT+AGG + Chr1:14083935-14083954 MsG0180000985.01.T01:intron 30.0%
CTTTATCTTATGCTCAAAAG+AGG + Chr1:14084991-14085010 MsG0180000985.01.T01:CDS 30.0%
GAACGTAAACAATAATACCT+TGG - Chr1:14084900-14084919 None:intergenic 30.0%
GAATTGTGTAGATATAGAGA+AGG + Chr1:14082370-14082389 MsG0180000985.01.T01:CDS 30.0%
GATTTGCAGTCATTAACATA+TGG + Chr1:14083470-14083489 MsG0180000985.01.T01:intron 30.0%
GTAGAAGCAACAAATATCTT+TGG - Chr1:14085131-14085150 None:intergenic 30.0%
GTTATTATCTCTTTCTTTGG+TGG + Chr1:14084681-14084700 MsG0180000985.01.T01:intron 30.0%
TAATAAAGTGACATACCAAC+TGG - Chr1:14084226-14084245 None:intergenic 30.0%
TATAAGCGAGAATCTTTCTT+TGG + Chr1:14084643-14084662 MsG0180000985.01.T01:intron 30.0%
TATTTGTCTTCTTCCTTGTT+TGG + Chr1:14084949-14084968 MsG0180000985.01.T01:intron 30.0%
TCGATTAAAATCAAACGGTT+TGG - Chr1:14083684-14083703 None:intergenic 30.0%
TTATCTTATGCTCAAAAGAG+GGG + Chr1:14084993-14085012 MsG0180000985.01.T01:CDS 30.0%
! AAATAACATAACCGTTTTGG+GGG - Chr1:14083594-14083613 None:intergenic 30.0%
! AGCAAATGTTTGTTGACAAA+TGG - Chr1:14084841-14084860 None:intergenic 30.0%
! CTTTACGTTGAAAGTGTATT+TGG + Chr1:14084518-14084537 MsG0180000985.01.T01:intron 30.0%
! GTTTTACCTTATCATTGTGA+CGG + Chr1:14083616-14083635 MsG0180000985.01.T01:intron 30.0%
! TAGCTTTTGCAAAATCAAGA+TGG + Chr1:14083108-14083127 MsG0180000985.01.T01:intron 30.0%
! TGTTGCTTCTACAAAGTTAA+AGG + Chr1:14085139-14085158 MsG0180000985.01.T01:CDS 30.0%
!! AATTCCTTCTTGTTGTTTGA+AGG + Chr1:14082394-14082413 MsG0180000985.01.T01:CDS 30.0%
!! CTATACCGTCTAATTTTGAT+CGG + Chr1:14082924-14082943 MsG0180000985.01.T01:intron 30.0%
!! GGTTTTAATGTTGTTAATCC+AGG + Chr1:14083732-14083751 MsG0180000985.01.T01:intron 30.0%
!!! ACCGTTAGTTTTGATGATTT+TGG + Chr1:14083283-14083302 MsG0180000985.01.T01:intron 30.0%
!!! ACTTTTTCAATAGGGTTGAT+CGG - Chr1:14085040-14085059 None:intergenic 30.0%
!!! TGCCTTCAACTTTTTCAATA+GGG - Chr1:14085048-14085067 None:intergenic 30.0%
!!! TTAATCCAGGTTTTAGTTGT+TGG + Chr1:14083745-14083764 MsG0180000985.01.T01:intron 30.0%
!!! TTGCCTTCAACTTTTTCAAT+AGG - Chr1:14085049-14085068 None:intergenic 30.0%
AATTGTTCAGTTGACTGAGA+AGG + Chr1:14083514-14083533 MsG0180000985.01.T01:CDS 35.0%
ACCATCCGATCAAAATTAGA+CGG - Chr1:14082932-14082951 None:intergenic 35.0%
ATAGCATCATACTTTCCTTC+AGG - Chr1:14084184-14084203 None:intergenic 35.0%
ATCGGGTTTACAAAATCAAC+TGG - Chr1:14085022-14085041 None:intergenic 35.0%
ATTATGCAATTGGACAAACC+TGG - Chr1:14082642-14082661 None:intergenic 35.0%
CTAAGCACATAAGAGAACTT+AGG + Chr1:14085071-14085090 MsG0180000985.01.T01:CDS 35.0%
GACTGCAAATCCATAACAAT+TGG - Chr1:14083461-14083480 None:intergenic 35.0%
GCTTCATACTCATCTTATTG+AGG + Chr1:14084806-14084825 MsG0180000985.01.T01:CDS 35.0%
TGGACAATATCTCGGAAAAA+CGG + Chr1:14082312-14082331 MsG0180000985.01.T01:CDS 35.0%
TGTTGATGTCACATTGAGTT+AGG - Chr1:14083150-14083169 None:intergenic 35.0%
! ATCTCTTTCTTTGGTGGTTT+AGG + Chr1:14084687-14084706 MsG0180000985.01.T01:intron 35.0%
! CGATGATCTTGTTTGGATAT+TGG + Chr1:14082836-14082855 MsG0180000985.01.T01:intron 35.0%
! GTAATATGGCAGAAAGTATG+TGG + Chr1:14084784-14084803 MsG0180000985.01.T01:CDS 35.0%
! TAACATTTTCTTAGGGGTGA+TGG - Chr1:14082557-14082576 None:intergenic 35.0%
! TACAAAGTTAAAGGCGTGTT+CGG + Chr1:14085148-14085167 MsG0180000985.01.T01:CDS 35.0%
! TATTTTCCAGAGTTAGCTGT+TGG + Chr1:14083969-14083988 MsG0180000985.01.T01:CDS 35.0%
! TTAGCACAAAAGAAAGTACG+AGG - Chr1:14084401-14084420 None:intergenic 35.0%
! TTAGCCTTCAAACAACAAGA+AGG - Chr1:14082401-14082420 None:intergenic 35.0%
! TTTTTGTACGCGTACATGTT+TGG + Chr1:14083054-14083073 MsG0180000985.01.T01:intron 35.0%
!! ATTCTACTGTTGTTTCAGGA+TGG + Chr1:14082453-14082472 MsG0180000985.01.T01:CDS 35.0%
!! TCTCAGTCATTTTGATCCTT+TGG - Chr1:14084480-14084499 None:intergenic 35.0%
!! TGTCATTCTACTGTTGTTTC+AGG + Chr1:14082449-14082468 MsG0180000985.01.T01:CDS 35.0%
!! TTCTTGTTGTTTGAAGGCTA+AGG + Chr1:14082400-14082419 MsG0180000985.01.T01:CDS 35.0%
!!! CTTTTTCAATAGGGTTGATC+GGG - Chr1:14085039-14085058 None:intergenic 35.0%
!!! TAATTTTTGGCTAAGGATGG+TGG + Chr1:14082764-14082783 MsG0180000985.01.T01:intron 35.0%
ACTTAGGTTCTATAACTCGG+AGG + Chr1:14085087-14085106 MsG0180000985.01.T01:CDS 40.0%
ATATTACATAGCACTCCACC+AGG - Chr1:14084771-14084790 None:intergenic 40.0%
CAACATGAGTTACAGAACTG+TGG - Chr1:14083807-14083826 None:intergenic 40.0%
CCTCAAAAACCAAAACCTCT+TGG - Chr1:14083377-14083396 None:intergenic 40.0%
CGAATTCCGTCACAATGATA+AGG - Chr1:14083625-14083644 None:intergenic 40.0%
CTAGTGTTCCAACATATCCA+AGG + Chr1:14084880-14084899 MsG0180000985.01.T01:CDS 40.0%
GACTATCCGATGATCTTGTT+TGG + Chr1:14082829-14082848 MsG0180000985.01.T01:intron 40.0%
GGAAAAATCAGAGTTCCAAG+AGG + Chr1:14083359-14083378 MsG0180000985.01.T01:CDS 40.0%
GGGTTTACAAAATCAACTGG+TGG - Chr1:14085019-14085038 None:intergenic 40.0%
TCAAATCCAACAGCTAACTC+TGG - Chr1:14083978-14083997 None:intergenic 40.0%
TCACAATCTCAATCTTCCTC+TGG + Chr1:14082479-14082498 MsG0180000985.01.T01:CDS 40.0%
TGTCTGACACGTTTCAATGT+TGG + Chr1:14084541-14084560 MsG0180000985.01.T01:intron 40.0%
TTGCTTCTGTACGTTATGCA+TGG + Chr1:14084856-14084875 MsG0180000985.01.T01:CDS 40.0%
TTTCTTAGATGCACTCCTGA+AGG + Chr1:14084166-14084185 MsG0180000985.01.T01:CDS 40.0%
! AGAAAGTACGAGGAAACCTT+AGG - Chr1:14084391-14084410 None:intergenic 40.0%
! ATCAGAGTTCCAAGAGGTTT+TGG + Chr1:14083365-14083384 MsG0180000985.01.T01:CDS 40.0%
! ATTGGTCGAGATTTTGAGCT+CGG + Chr1:14082854-14082873 MsG0180000985.01.T01:intron 40.0%
! TGGTGGAGTGCTATGTAATA+TGG + Chr1:14084770-14084789 MsG0180000985.01.T01:CDS 40.0%
! TTAGCTAAGGCATTAAGACC+TGG + Chr1:14084750-14084769 MsG0180000985.01.T01:CDS 40.0%
!! ACCGTCTAATTTTGATCGGA+TGG + Chr1:14082928-14082947 MsG0180000985.01.T01:intron 40.0%
!! ACTTTCAACGTAAAGTGTCG+AGG - Chr1:14084513-14084532 None:intergenic 40.0%
!!! ATCCAGGTTTTAGTTGTTGG+TGG + Chr1:14083748-14083767 MsG0180000985.01.T01:intron 40.0%
!!! CCAAGAGGTTTTGGTTTTTG+AGG + Chr1:14083374-14083393 MsG0180000985.01.T01:CDS 40.0%
AAGGTTTCAGTCCCTGAACT+TGG + Chr1:14082419-14082438 MsG0180000985.01.T01:CDS 45.0%
AATGAATATCCACGACCGCA+TGG - Chr1:14083651-14083670 None:intergenic 45.0%
AGATACCATCACCAACATGC+AGG - Chr1:14084016-14084035 None:intergenic 45.0%
AGGTTTCAGTCCCTGAACTT+GGG + Chr1:14082420-14082439 MsG0180000985.01.T01:CDS 45.0%
ATCTCGGAAAAACGGTGTAG+CGG + Chr1:14082320-14082339 MsG0180000985.01.T01:CDS 45.0%
CACCACCAACAACTAAAACC+TGG - Chr1:14083753-14083772 None:intergenic 45.0%
CATGAGTTACAGAACTGTGG+CGG - Chr1:14083804-14083823 None:intergenic 45.0%
CTCAATTCAGTCCCCCAAAA+CGG + Chr1:14083580-14083599 MsG0180000985.01.T01:CDS 45.0%
GGAGATGAGCTATCATCTCT+TGG - Chr1:14083553-14083572 None:intergenic 45.0%
GGATGGTTCAGATGAATGTG+TGG + Chr1:14082945-14082964 MsG0180000985.01.T01:intron 45.0%
GGGACTGAATTGAGCAAAGT+GGG - Chr1:14083574-14083593 None:intergenic 45.0%
TGACGGAATTCGATTCCATG+CGG + Chr1:14083633-14083652 MsG0180000985.01.T01:intron 45.0%
TTCAACAATCCAATGTGGCC+AGG + Chr1:14082621-14082640 MsG0180000985.01.T01:intron 45.0%
TTCTCTACAAGTTCCTGAGC+AGG - Chr1:14084714-14084733 None:intergenic 45.0%
!! ATGGTGGAGGTGGACTATAT+GGG + Chr1:14082780-14082799 MsG0180000985.01.T01:intron 45.0%
!! GCAAGATTGATGATGACCAG+AGG - Chr1:14082498-14082517 None:intergenic 45.0%
!! GGGAAAGTGCTTGTACTTGA+TGG + Chr1:14083491-14083510 MsG0180000985.01.T01:CDS 45.0%
!! GTAAAGTGTCGAGGCTACAT+AGG - Chr1:14084504-14084523 None:intergenic 45.0%
!! TGGAGATGGTGGAGTTCTAA+GGG + Chr1:14083771-14083790 MsG0180000985.01.T01:CDS 45.0%
!! TTAGTTGTTGGTGGTGGAGA+TGG + Chr1:14083757-14083776 MsG0180000985.01.T01:CDS 45.0%
!!! CAGGTTTTAGTTGTTGGTGG+TGG + Chr1:14083751-14083770 MsG0180000985.01.T01:intron 45.0%
!!! TTTTTGGCTAAGGATGGTGG+AGG + Chr1:14082767-14082786 MsG0180000985.01.T01:intron 45.0%
AATTCGATTCCATGCGGTCG+TGG + Chr1:14083639-14083658 MsG0180000985.01.T01:intron 50.0%
ACACCACTGCATGCCAAACA+AGG - Chr1:14084965-14084984 None:intergenic 50.0%
CCAACATGCAGGTGTACTCT+AGG - Chr1:14084005-14084024 None:intergenic 50.0%
CCTAGAGTACACCTGCATGT+TGG + Chr1:14084002-14084021 MsG0180000985.01.T01:CDS 50.0%
GACACTTTCCCCCAAGTTCA+GGG - Chr1:14082433-14082452 None:intergenic 50.0%
GGGGACTGAATTGAGCAAAG+TGG - Chr1:14083575-14083594 None:intergenic 50.0%
GGTTTCAGTCCCTGAACTTG+GGG + Chr1:14082421-14082440 MsG0180000985.01.T01:CDS 50.0%
GTTTCAGTCCCTGAACTTGG+GGG + Chr1:14082422-14082441 MsG0180000985.01.T01:CDS 50.0%
TGACACTTTCCCCCAAGTTC+AGG - Chr1:14082434-14082453 None:intergenic 50.0%
TGACATACCAACTGGGTCAG+AGG - Chr1:14084218-14084237 None:intergenic 50.0%
TTGGACAAACCTGGCCACAT+TGG - Chr1:14082633-14082652 None:intergenic 50.0%
TTGGCATGCAGTGGTGTGAT+AGG + Chr1:14084968-14084987 MsG0180000985.01.T01:intron 50.0%
! CTTCCTTGTTTGGCATGCAG+TGG + Chr1:14084959-14084978 MsG0180000985.01.T01:intron 50.0%
! GCTAAGGCATTAAGACCTGG+TGG + Chr1:14084753-14084772 MsG0180000985.01.T01:CDS 50.0%
! GTACACCTGCATGTTGGTGA+TGG + Chr1:14084008-14084027 MsG0180000985.01.T01:CDS 50.0%
! GTTGATTCCTCTGACCCAGT+TGG + Chr1:14084208-14084227 MsG0180000985.01.T01:CDS 50.0%
!! AAAACGGTGTAGCGGACTTG+AGG + Chr1:14082328-14082347 MsG0180000985.01.T01:CDS 50.0%
!! GATGGTGGAGGTGGACTATA+TGG + Chr1:14082779-14082798 MsG0180000985.01.T01:intron 50.0%
!! GTGGAGATGGTGGAGTTCTA+AGG + Chr1:14083770-14083789 MsG0180000985.01.T01:CDS 50.0%
TGGTGGTTTAGGTCCTGCTC+AGG + Chr1:14084698-14084717 MsG0180000985.01.T01:intron 55.0%
!! GTTGTTGGTGGTGGAGATGG+TGG + Chr1:14083760-14083779 MsG0180000985.01.T01:CDS 55.0%
!! TTGGCTAAGGATGGTGGAGG+TGG + Chr1:14082770-14082789 MsG0180000985.01.T01:intron 55.0%
! AGCGGACTTGAGGTCGGAAC+AGG + Chr1:14082338-14082357 MsG0180000985.01.T01:CDS 60.0%
!! CGGTGTAGCGGACTTGAGGT+CGG + Chr1:14082332-14082351 MsG0180000985.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 14082311 14085177 14082311 ID=MsG0180000985.01;Name=MsG0180000985.01
Chr1 mRNA 14082311 14085177 14082311 ID=MsG0180000985.01.T01;Parent=MsG0180000985.01;Name=MsG0180000985.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0.85|0.62|1|1|1|8|0|343
Chr1 exon 14082311 14082500 14082311 ID=MsG0180000985.01.T01:exon:9643;Parent=MsG0180000985.01.T01
Chr1 exon 14083319 14083395 14083319 ID=MsG0180000985.01.T01:exon:9644;Parent=MsG0180000985.01.T01
Chr1 exon 14083479 14083601 14083479 ID=MsG0180000985.01.T01:exon:9645;Parent=MsG0180000985.01.T01
Chr1 exon 14083754 14083858 14083754 ID=MsG0180000985.01.T01:exon:9646;Parent=MsG0180000985.01.T01
Chr1 exon 14083957 14084029 14083957 ID=MsG0180000985.01.T01:exon:9647;Parent=MsG0180000985.01.T01
Chr1 exon 14084158 14084229 14084158 ID=MsG0180000985.01.T01:exon:9648;Parent=MsG0180000985.01.T01
Chr1 exon 14084709 14084901 14084709 ID=MsG0180000985.01.T01:exon:9649;Parent=MsG0180000985.01.T01
Chr1 exon 14084979 14085177 14084979 ID=MsG0180000985.01.T01:exon:9650;Parent=MsG0180000985.01.T01
Chr1 CDS 14082311 14082500 14082311 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14083319 14083395 14083319 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14083479 14083601 14083479 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14083754 14083858 14083754 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14083957 14084029 14083957 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14084158 14084229 14084158 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14084709 14084901 14084709 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Chr1 CDS 14084979 14085177 14084979 ID=MsG0180000985.01.T01:cds;Parent=MsG0180000985.01.T01
Gene Sequence

>MsG0180000985.01.T01

ATGGACAATATCTCGGAAAAACGGTGTAGCGGACTTGAGGTCGGAACAGGAAGTAACATGAATTGTGTAGATATAGAGAAGGAAATTCCTTCTTGTTGTTTGAAGGCTAAGGTTTCAGTCCCTGAACTTGGGGGAAAGTGTCATTCTACTGTTGTTTCAGGATGGTTCTCACAATCTCAATCTTCCTCTGGAGAAGCACATTCAATTAAAGTAGAAAAAATATTGTACGAGGAAAAATCAGAGTTCCAAGAGGTTTTGGTTTTTGAGTCATTAACATATGGGAAAGTGCTTGTACTTGATGGAATTGTTCAGTTGACTGAGAAGGATGAATGTGCTTACCAAGAGATGATAGCTCATCTCCCACTTTGCTCAATTCAGTCCCCCAAAACGGTTTTAGTTGTTGGTGGTGGAGATGGTGGAGTTCTAAGGGAAGTATGCCGCCACAGTTCTGTAACTCATGTTGATATTTGTGAGATAGATAAAATGGTTATTGATGTTTCAAAGAAGTATTTTCCAGAGTTAGCTGTTGGATTTGAAGATCCTAGAGTACACCTGCATGTTGGTGATGCTGTTGAATTTCTTAGATGCACTCCTGAAGGAAAGTATGATGCTATAATTGTTGATTCCTCTGACCCAGTTGGTCCTGCTCAGGAACTTGTAGAGAAACCATTTTTTGTGACATTAGCTAAGGCATTAAGACCTGGTGGAGTGCTATGTAATATGGCAGAAAGTATGTGGCTTCATACTCATCTTATTGAGGACATGATCTCCATTTGTCAACAAACATTTGCTTCTGTACGTTATGCATGGACTAGTGTTCCAACATATCCAAGTGGTGTGATAGGCTTTATCTTATGCTCAAAAGAGGGGCCACCAGTTGATTTTGTAAACCCGATCAACCCTATTGAAAAAGTTGAAGGCAATGCTAAGCACATAAGAGAACTTAGGTTCTATAACTCGGAGGTTAGTAAATATTATATGCCCAAAGATATTTGTTGCTTCTACAAAGTTAAAGGCGTGTTCGGTGTCTGA
Protein sequence

>MsG0180000985.01.T01

MDNISEKRCSGLEVGTGSNMNCVDIEKEIPSCCLKAKVSVPELGGKCHSTVVSGWFSQSQSSSGEAHSIKVEKILYEEKSEFQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIQSPKTVLVVGGGDGGVLREVCRHSSVTHVDICEIDKMVIDVSKKYFPELAVGFEDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFFVTLAKALRPGGVLCNMAESMWLHTHLIEDMISICQQTFASVRYAWTSVPTYPSGVIGFILCSKEGPPVDFVNPINPIEKVEGNAKHIRELRFYNSEVSKYYMPKDICCFYKVKGVFGV*