AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000495.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000495.01.T01 MTR_1g014670 87.255 408 33 2 1 408 1 389 0.0 713
MsG0180000495.01.T01 MTR_1g013360 79.856 417 56 3 2 408 43 441 0.0 652
MsG0180000495.01.T01 MTR_3g105590 73.077 416 84 4 2 408 39 435 0.0 602
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000495.01.T01 AT5G10720 60.628 414 132 5 2 408 42 431 4.66e-158 469
MsG0180000495.01.T01 AT5G10680 46.212 132 53 4 1 122 37 160 1.81e-23 98.6
MsG0180000495.01.T01 AT5G10680 46.212 132 53 4 1 122 37 160 1.81e-23 98.6

Find 62 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGCACCTGTTGTTAT+AGG 0.182020 1:+6921579 MsG0180000495.01.T01:CDS
CTTTGAAAATCAGCTATAAT+TGG 0.203037 1:-6921069 None:intergenic
AATAAAACTATTTACATTAC+AGG 0.248651 1:+6922664 MsG0180000495.01.T01:CDS
TATGATATCTTCAGGAGATT+TGG 0.302789 1:+6922911 MsG0180000495.01.T01:CDS
AGAAAGGAATACCTGCAAAA+AGG 0.324513 1:+6922101 MsG0180000495.01.T01:CDS
AAAACATCCGGATTCAATAT+TGG 0.341750 1:+6921299 MsG0180000495.01.T01:CDS
GAAACATCGGTCACGAGATA+TGG 0.358103 1:+6921407 MsG0180000495.01.T01:CDS
AGTATGATGATGTTGTTTAC+TGG 0.359184 1:+6921385 MsG0180000495.01.T01:CDS
TTTATTAAGTTCTGTTTCCT+TGG 0.367714 1:-6922647 None:intergenic
TATTGGATGGTGTTGCAATA+AGG 0.369745 1:+6921316 MsG0180000495.01.T01:CDS
CTGCTTATACTCCCAATGTT+TGG 0.389829 1:-6921148 None:intergenic
CGGTTATTTCCATTCCCATA+TGG 0.408058 1:-6922219 None:intergenic
AAGAGAGAAGTAATGGAGAA+AGG 0.411442 1:+6922085 MsG0180000495.01.T01:CDS
CTTCCTCCCTTTGTTTGCTA+AGG 0.415873 1:-6921209 None:intergenic
AGAAGAAGTAACAATCTTAG+AGG 0.423575 1:+6921044 MsG0180000495.01.T01:CDS
TGATCCTTCCAAGGCTGAGC+CGG 0.426238 1:+6922959 MsG0180000495.01.T01:CDS
AACGATTGGAGGGAAGTATT+CGG 0.430328 1:+6921433 MsG0180000495.01.T01:CDS
AACAATTGGAGTAAACCATA+TGG 0.430971 1:+6922204 MsG0180000495.01.T01:CDS
ATAAATTTCCAGGACCTCAT+AGG 0.439968 1:+6922007 MsG0180000495.01.T01:intron
GAGATACTTAAAGACAATAA+TGG 0.444436 1:+6921249 MsG0180000495.01.T01:CDS
TAGAGAACAAAGACAGCTCT+TGG 0.457376 1:+6922884 MsG0180000495.01.T01:CDS
AGCTAATCTCACCAAACATT+GGG 0.459533 1:+6921137 MsG0180000495.01.T01:CDS
TTTCTAACCCGGCTCAGCCT+TGG 0.461724 1:-6922967 None:intergenic
TTGGATGCTATGATATCTTC+AGG 0.470493 1:+6922903 MsG0180000495.01.T01:CDS
AGCAAGGCAGGAGAAACAAT+TGG 0.472538 1:+6922190 MsG0180000495.01.T01:CDS
ACCTGTTGTTATAGGCCATC+AGG 0.477859 1:+6921587 MsG0180000495.01.T01:CDS
GGGAATGGAAATAACCGATC+AGG 0.483035 1:+6922225 MsG0180000495.01.T01:CDS
ACCTGATGGCCTATAACAAC+AGG 0.486112 1:-6921588 None:intergenic
GAACCTGTGTTTAGCAAGGC+AGG 0.487467 1:+6922178 MsG0180000495.01.T01:CDS
TGCCATTGCAATGAATTCCC+AGG 0.490385 1:+6921777 MsG0180000495.01.T01:CDS
ACACCATCCAATATTGAATC+CGG 0.501464 1:-6921306 None:intergenic
GATCCTTCCAAGGCTGAGCC+GGG 0.505732 1:+6922960 MsG0180000495.01.T01:CDS
AAACAAAAGAATTGAAATTG+AGG 0.507015 1:+6921359 MsG0180000495.01.T01:CDS
GATAGCGCAACTCTTTGTCC+TGG 0.508342 1:-6921795 None:intergenic
GTCCTGGGAATTCATTGCAA+TGG 0.518698 1:-6921779 None:intergenic
TGTCGAGCTCTTCTCGAAGA+AGG 0.522863 1:-6921185 None:intergenic
AATGAGAGCAAAACAAGTGC+TGG 0.527084 1:+6922782 MsG0180000495.01.T01:CDS
ACTTTCTGATGTTGTTAGCA+TGG 0.533367 1:+6922833 MsG0180000495.01.T01:CDS
CGACAACCTTAGCAAACAAA+GGG 0.535427 1:+6921203 MsG0180000495.01.T01:CDS
TAGCTAATCTCACCAAACAT+TGG 0.536290 1:+6921136 MsG0180000495.01.T01:CDS
ACAATTGGAGTAAACCATAT+GGG 0.538203 1:+6922205 MsG0180000495.01.T01:CDS
TAAAGACAATAATGGATTCG+AGG 0.541318 1:+6921257 MsG0180000495.01.T01:CDS
TCTCCTGCCTTGCTAAACAC+AGG 0.549002 1:-6922181 None:intergenic
CATCCGGATTCAATATTGGA+TGG 0.554723 1:+6921303 MsG0180000495.01.T01:CDS
TGGAGTAAACCATATGGGAA+TGG 0.555183 1:+6922210 MsG0180000495.01.T01:CDS
TGATATACTTGATCCTTCCA+AGG 0.562404 1:+6922950 MsG0180000495.01.T01:CDS
ATCTGTGACAGTTCTTCCAC+AGG 0.563140 1:-6921519 None:intergenic
TAACCCGGCTCAGCCTTGGA+AGG 0.574947 1:-6922963 None:intergenic
CAAACATTGGGAGTATAAGC+AGG 0.575100 1:+6921149 MsG0180000495.01.T01:CDS
ATAGCGCAACTCTTTGTCCT+GGG 0.579718 1:-6921794 None:intergenic
ATGCTAACAACATCAGAAAG+TGG 0.579722 1:-6922831 None:intergenic
TCGACAACCTTAGCAAACAA+AGG 0.586507 1:+6921202 MsG0180000495.01.T01:CDS
GGTAAAGGAAATTTCTAACC+CGG 0.593807 1:-6922978 None:intergenic
TGCAGAACCTGTGTTTAGCA+AGG 0.605158 1:+6922174 MsG0180000495.01.T01:CDS
TTTCACGGGATCAGGTGCGA+AGG 0.618292 1:+6922048 MsG0180000495.01.T01:CDS
ATGTTGTTTACTGGAAACAT+CGG 0.642416 1:+6921394 MsG0180000495.01.T01:CDS
CAACCTTAGCAAACAAAGGG+AGG 0.643459 1:+6921206 MsG0180000495.01.T01:CDS
TGAAAGACAATCATCACCTG+TGG 0.646063 1:+6921503 MsG0180000495.01.T01:CDS
AATTGCAGTTCAGAAAGCCA+AGG 0.648370 1:+6922630 MsG0180000495.01.T01:CDS
GTAAACAACATCATCATACT+CGG 0.655371 1:-6921382 None:intergenic
GGATTCGAGGAAGAAAGCTA+CGG 0.661034 1:+6921270 MsG0180000495.01.T01:CDS
TTCGAGGAAGAAAGCTACGG+TGG 0.662476 1:+6921273 MsG0180000495.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAACTATTTACATTAC+AGG + Chr1:6922664-6922683 MsG0180000495.01.T01:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG - Chr1:6922704-6922723 None:intergenic 15.0%
!!! TTGTAAATTTGTTTATAAGT+GGG - Chr1:6922353-6922372 None:intergenic 15.0%
!! AAAATAAATCATGAAGACAA+AGG - Chr1:6921979-6921998 None:intergenic 20.0%
!! AAACAAAAGAATTGAAATTG+AGG + Chr1:6921359-6921378 MsG0180000495.01.T01:CDS 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG - Chr1:6922354-6922373 None:intergenic 20.0%
!!! GATTGAAAAGTATTAGAATT+TGG - Chr1:6922526-6922545 None:intergenic 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG - Chr1:6922352-6922371 None:intergenic 20.0%
! ATAGGATATGTGTTTATAAG+TGG + Chr1:6922488-6922507 MsG0180000495.01.T01:intron 25.0%
! GAGATACTTAAAGACAATAA+TGG + Chr1:6921249-6921268 MsG0180000495.01.T01:CDS 25.0%
! TAGGATATGTGTTTATAAGT+GGG + Chr1:6922489-6922508 MsG0180000495.01.T01:intron 25.0%
! TTTATTAAGTTCTGTTTCCT+TGG - Chr1:6922650-6922669 None:intergenic 25.0%
!! ATTGTCTTAAAATTTGGGTT+AGG + Chr1:6922283-6922302 MsG0180000495.01.T01:intron 25.0%
!! CTTTGAAAATCAGCTATAAT+TGG - Chr1:6921072-6921091 None:intergenic 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG - Chr1:6922351-6922370 None:intergenic 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG + Chr1:6922078-6922097 MsG0180000495.01.T01:CDS 25.0%
AAAACATCCGGATTCAATAT+TGG + Chr1:6921299-6921318 MsG0180000495.01.T01:CDS 30.0%
AACAATTGGAGTAAACCATA+TGG + Chr1:6922204-6922223 MsG0180000495.01.T01:CDS 30.0%
ACAATTGGAGTAAACCATAT+GGG + Chr1:6922205-6922224 MsG0180000495.01.T01:CDS 30.0%
ACCTGCATTGTCTTAAAATT+TGG + Chr1:6922277-6922296 MsG0180000495.01.T01:intron 30.0%
AGAAAAAATGGCAAAGCTAA+GGG + Chr1:6922603-6922622 MsG0180000495.01.T01:CDS 30.0%
AGAAGAAGTAACAATCTTAG+AGG + Chr1:6921044-6921063 MsG0180000495.01.T01:CDS 30.0%
AGGATATGTGTTTATAAGTG+GGG + Chr1:6922490-6922509 MsG0180000495.01.T01:intron 30.0%
CCTGCATTGTCTTAAAATTT+GGG + Chr1:6922278-6922297 MsG0180000495.01.T01:intron 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG + Chr1:6922591-6922610 MsG0180000495.01.T01:intron 30.0%
GTAAACAACATCATCATACT+CGG - Chr1:6921385-6921404 None:intergenic 30.0%
TAATTTCGACAAACAATTGC+AGG + Chr1:6922570-6922589 MsG0180000495.01.T01:intron 30.0%
TATGATATCTTCAGGAGATT+TGG + Chr1:6922911-6922930 MsG0180000495.01.T01:CDS 30.0%
TTACTTGCACATAAATTTCC+AGG + Chr1:6921997-6922016 MsG0180000495.01.T01:intron 30.0%
! AACGGATGTTGAAATTTTCA+CGG + Chr1:6922033-6922052 MsG0180000495.01.T01:CDS 30.0%
! AGTAACAGTTTTTACCTGAT+CGG - Chr1:6922242-6922261 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG + Chr1:6921385-6921404 MsG0180000495.01.T01:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG + Chr1:6921394-6921413 MsG0180000495.01.T01:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG - Chr1:6921841-6921860 None:intergenic 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG + Chr1:6922465-6922484 MsG0180000495.01.T01:intron 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG + Chr1:6921831-6921850 MsG0180000495.01.T01:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG - Chr1:6921834-6921853 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG + Chr1:6922243-6922262 MsG0180000495.01.T01:intron 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG + Chr1:6921834-6921853 MsG0180000495.01.T01:CDS 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG - Chr1:6922115-6922134 None:intergenic 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG + Chr1:6921077-6921096 MsG0180000495.01.T01:CDS 30.0%
!! TAAAGACAATAATGGATTCG+AGG + Chr1:6921257-6921276 MsG0180000495.01.T01:CDS 30.0%
AAAACCAACTTGTAAGGTCT+GGG + Chr1:6922322-6922341 MsG0180000495.01.T01:intron 35.0%
ACACCATCCAATATTGAATC+CGG - Chr1:6921309-6921328 None:intergenic 35.0%
ACGAGATATGGAAAAACGAT+TGG + Chr1:6921419-6921438 MsG0180000495.01.T01:CDS 35.0%
ACTTTCTGATGTTGTTAGCA+TGG + Chr1:6922833-6922852 MsG0180000495.01.T01:CDS 35.0%
AGAAAGGAATACCTGCAAAA+AGG + Chr1:6922101-6922120 MsG0180000495.01.T01:CDS 35.0%
AGATATGGAAAAACGATTGG+AGG + Chr1:6921422-6921441 MsG0180000495.01.T01:CDS 35.0%
AGCTAATCTCACCAAACATT+GGG + Chr1:6921137-6921156 MsG0180000495.01.T01:CDS 35.0%
ATAAATTTCCAGGACCTCAT+AGG + Chr1:6922007-6922026 MsG0180000495.01.T01:intron 35.0%
ATGCTAACAACATCAGAAAG+TGG - Chr1:6922834-6922853 None:intergenic 35.0%
ATTGTCTCCTCTATTACAAG+GGG - Chr1:6922765-6922784 None:intergenic 35.0%
CAAAATGCACCTGTTGTTAT+AGG + Chr1:6921579-6921598 MsG0180000495.01.T01:CDS 35.0%
CATTGTCTCCTCTATTACAA+GGG - Chr1:6922766-6922785 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG + Chr1:6922316-6922335 MsG0180000495.01.T01:intron 35.0%
GAAAGGAATACCTGCAAAAA+GGG + Chr1:6922102-6922121 MsG0180000495.01.T01:CDS 35.0%
GAGAAAAAATGGCAAAGCTA+AGG + Chr1:6922602-6922621 MsG0180000495.01.T01:CDS 35.0%
GATATGGAAAAACGATTGGA+GGG + Chr1:6921423-6921442 MsG0180000495.01.T01:CDS 35.0%
GGATATGTGTTTATAAGTGG+GGG + Chr1:6922491-6922510 MsG0180000495.01.T01:intron 35.0%
TAGCTAATCTCACCAAACAT+TGG + Chr1:6921136-6921155 MsG0180000495.01.T01:CDS 35.0%
TCATTGTCTCCTCTATTACA+AGG - Chr1:6922767-6922786 None:intergenic 35.0%
TGATATACTTGATCCTTCCA+AGG + Chr1:6922950-6922969 MsG0180000495.01.T01:CDS 35.0%
TTAGTAGTCTCACATTGGAT+AGG + Chr1:6922470-6922489 MsG0180000495.01.T01:intron 35.0%
TTGGATGCTATGATATCTTC+AGG + Chr1:6922903-6922922 MsG0180000495.01.T01:CDS 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG + Chr1:6922085-6922104 MsG0180000495.01.T01:CDS 35.0%
! ACGGATGTTGAAATTTTCAC+GGG + Chr1:6922034-6922053 MsG0180000495.01.T01:CDS 35.0%
!! TATTGGATGGTGTTGCAATA+AGG + Chr1:6921316-6921335 MsG0180000495.01.T01:CDS 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG + Chr1:6922130-6922149 MsG0180000495.01.T01:CDS 35.0%
!!! CCCAAATTTTAAGACAATGC+AGG - Chr1:6922281-6922300 None:intergenic 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG - Chr1:6922319-6922338 None:intergenic 35.0%
AAGCCATATCTCATCCAATG+TGG + Chr1:6922371-6922390 MsG0180000495.01.T01:intron 40.0%
AATGAGAGCAAAACAAGTGC+TGG + Chr1:6922782-6922801 MsG0180000495.01.T01:CDS 40.0%
AATTGCAGTTCAGAAAGCCA+AGG + Chr1:6922630-6922649 MsG0180000495.01.T01:CDS 40.0%
CAAAACCAACTTGTAAGGTC+TGG + Chr1:6922321-6922340 MsG0180000495.01.T01:intron 40.0%
CATCCGGATTCAATATTGGA+TGG + Chr1:6921303-6921322 MsG0180000495.01.T01:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG + Chr1:6921203-6921222 MsG0180000495.01.T01:CDS 40.0%
CTGCTTATACTCCCAATGTT+TGG - Chr1:6921151-6921170 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG + Chr1:6921850-6921869 MsG0180000495.01.T01:intron 40.0%
GAGGTAATGATTCTTGTTGG+AGG + Chr1:6921853-6921872 MsG0180000495.01.T01:intron 40.0%
TAGAGAACAAAGACAGCTCT+TGG + Chr1:6922884-6922903 MsG0180000495.01.T01:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG + Chr1:6921202-6921221 MsG0180000495.01.T01:CDS 40.0%
TGAAAGACAATCATCACCTG+TGG + Chr1:6921503-6921522 MsG0180000495.01.T01:CDS 40.0%
TGACCTTAGTTGCCTGATAT+CGG - Chr1:6922412-6922431 None:intergenic 40.0%
TGGAGTAAACCATATGGGAA+TGG + Chr1:6922210-6922229 MsG0180000495.01.T01:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG + Chr1:6922755-6922774 MsG0180000495.01.T01:intron 40.0%
! CAAACATTGGGAGTATAAGC+AGG + Chr1:6921149-6921168 MsG0180000495.01.T01:CDS 40.0%
! CGGTTATTTCCATTCCCATA+TGG - Chr1:6922222-6922241 None:intergenic 40.0%
! GTTGAAATTTTCACGGGATC+AGG + Chr1:6922040-6922059 MsG0180000495.01.T01:CDS 40.0%
!! AACGATTGGAGGGAAGTATT+CGG + Chr1:6921433-6921452 MsG0180000495.01.T01:CDS 40.0%
!! CAACATCCGTTTTTCCTATG+AGG - Chr1:6922024-6922043 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG - Chr1:6922309-6922328 None:intergenic 40.0%
ACCTGATGGCCTATAACAAC+AGG - Chr1:6921591-6921610 None:intergenic 45.0%
ACCTGTTGTTATAGGCCATC+AGG + Chr1:6921587-6921606 MsG0180000495.01.T01:CDS 45.0%
ACTCGTTGTAGTGTACCTGA+TGG - Chr1:6921605-6921624 None:intergenic 45.0%
AGCAAGGCAGGAGAAACAAT+TGG + Chr1:6922190-6922209 MsG0180000495.01.T01:CDS 45.0%
AGGCCACATTGGATGAGATA+TGG - Chr1:6922377-6922396 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG - Chr1:6921797-6921816 None:intergenic 45.0%
ATCTGTGACAGTTCTTCCAC+AGG - Chr1:6921522-6921541 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG + Chr1:6922397-6922416 MsG0180000495.01.T01:intron 45.0%
CAACCTTAGCAAACAAAGGG+AGG + Chr1:6921206-6921225 MsG0180000495.01.T01:CDS 45.0%
CCAGGACCTCATAGGAAAAA+CGG + Chr1:6922015-6922034 MsG0180000495.01.T01:intron 45.0%
CTACGGTGGAGAAAAACATC+CGG + Chr1:6921287-6921306 MsG0180000495.01.T01:CDS 45.0%
GAAACATCGGTCACGAGATA+TGG + Chr1:6921407-6921426 MsG0180000495.01.T01:CDS 45.0%
GACCTTAGTTGCCTGATATC+GGG - Chr1:6922411-6922430 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG - Chr1:6922397-6922416 None:intergenic 45.0%
GGATTCGAGGAAGAAAGCTA+CGG + Chr1:6921270-6921289 MsG0180000495.01.T01:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG + Chr1:6922225-6922244 MsG0180000495.01.T01:CDS 45.0%
GTCCTGGGAATTCATTGCAA+TGG - Chr1:6921782-6921801 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG - Chr1:6922388-6922407 None:intergenic 45.0%
TGCAGAACCTGTGTTTAGCA+AGG + Chr1:6922174-6922193 MsG0180000495.01.T01:CDS 45.0%
TGCCATTGCAATGAATTCCC+AGG + Chr1:6921777-6921796 MsG0180000495.01.T01:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG - Chr1:6921212-6921231 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG + Chr1:6921866-6921885 MsG0180000495.01.T01:intron 45.0%
ACGCTTCAGATGTCTAGTCC+TGG + Chr1:6922431-6922450 MsG0180000495.01.T01:intron 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG + Chr1:6922440-6922459 MsG0180000495.01.T01:intron 50.0%
CGCTTCAGATGTCTAGTCCT+GGG + Chr1:6922432-6922451 MsG0180000495.01.T01:intron 50.0%
GAACCTGTGTTTAGCAAGGC+AGG + Chr1:6922178-6922197 MsG0180000495.01.T01:CDS 50.0%
GACCCGATATCAGGCAACTA+AGG + Chr1:6922406-6922425 MsG0180000495.01.T01:intron 50.0%
GATAGCGCAACTCTTTGTCC+TGG - Chr1:6921798-6921817 None:intergenic 50.0%
GCAACCCAGACCTTACAAGT+TGG - Chr1:6922329-6922348 None:intergenic 50.0%
TCTCCTGCCTTGCTAAACAC+AGG - Chr1:6922184-6922203 None:intergenic 50.0%
TGTCGAGCTCTTCTCGAAGA+AGG - Chr1:6921188-6921207 None:intergenic 50.0%
TTCGAGGAAGAAAGCTACGG+TGG + Chr1:6921273-6921292 MsG0180000495.01.T01:CDS 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG - Chr1:6922018-6922037 None:intergenic 50.0%
AACAAATCGCCCTTACGCCC+AGG - Chr1:6922452-6922471 None:intergenic 55.0%
GATGTCTAGTCCTGGGCGTA+AGG + Chr1:6922439-6922458 MsG0180000495.01.T01:intron 55.0%
TGATCCTTCCAAGGCTGAGC+CGG + Chr1:6922959-6922978 MsG0180000495.01.T01:CDS 55.0%
TTTCACGGGATCAGGTGCGA+AGG + Chr1:6922048-6922067 MsG0180000495.01.T01:CDS 55.0%
GATCCTTCCAAGGCTGAGCC+GGG + Chr1:6922960-6922979 MsG0180000495.01.T01:CDS 60.0%
TAACCCGGCTCAGCCTTGGA+AGG - Chr1:6922966-6922985 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 6921027 6922986 6921027 ID=MsG0180000495.01;Name=MsG0180000495.01
Chr1 mRNA 6921027 6922986 6921027 ID=MsG0180000495.01.T01;Parent=MsG0180000495.01;Name=MsG0180000495.01.T01;_AED=0.23;_eAED=0.27;_QI=0|0|0|1|1|1|5|0|408
Chr1 exon 6921027 6921608 6921027 ID=MsG0180000495.01.T01:exon:2334;Parent=MsG0180000495.01.T01
Chr1 exon 6921745 6921855 6921745 ID=MsG0180000495.01.T01:exon:2333;Parent=MsG0180000495.01.T01
Chr1 exon 6922019 6922246 6922019 ID=MsG0180000495.01.T01:exon:2332;Parent=MsG0180000495.01.T01
Chr1 exon 6922592 6922685 6922592 ID=MsG0180000495.01.T01:exon:2331;Parent=MsG0180000495.01.T01
Chr1 exon 6922775 6922986 6922775 ID=MsG0180000495.01.T01:exon:2330;Parent=MsG0180000495.01.T01
Chr1 CDS 6921027 6921608 6921027 ID=MsG0180000495.01.T01:cds;Parent=MsG0180000495.01.T01
Chr1 CDS 6921745 6921855 6921745 ID=MsG0180000495.01.T01:cds;Parent=MsG0180000495.01.T01
Chr1 CDS 6922019 6922246 6922019 ID=MsG0180000495.01.T01:cds;Parent=MsG0180000495.01.T01
Chr1 CDS 6922592 6922685 6922592 ID=MsG0180000495.01.T01:cds;Parent=MsG0180000495.01.T01
Chr1 CDS 6922775 6922986 6922775 ID=MsG0180000495.01.T01:cds;Parent=MsG0180000495.01.T01
Gene Sequence

>MsG0180000495.01.T01

ATGGATCAAGATATATTAGAAGAAGTAACAATCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTGGAGCTTACAGATTATACAGATATAGCGTCTTCTCAGTTAGCTAATCTCACCAAACATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGCTTAAAAAGTGTGAGATACTTAAAGACAATAATGGATTCGAGGAAGAAAGCTACGGTGGAGAAAAACATCCGGATTCAATATTGGATGGTGTTGCAATAAGGAAAAATGACGCTGTCATTCAAAACAAAAGAATTGAAATTGAGGCCGAGTATGATGATGTTGTTTACTGGAAACATCGGTCACGAGATATGGAAAAACGATTGGAGGGAAGTATTCGGAGAGAAGAAATATTAAAAGAAAAGTTGCAAGAAAGTACAGAGATTATTGAAAGACAATCATCACCTGTGGAAGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATAGGCCATCAGTTGATTCATCATTTGAATGCTAAATTTGTGTTTGCCATTGCAATGAATTCCCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAACCATTTTCCAAGTTTAAAAGAGGAGGACCTCATAGGAAAAACGGATGTTGAAATTTTCACGGGATCAGGTGCGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAGGGAAATAACTTTTGAGACAGAACTGTTTGGATCAAAGACATTTTTGTTGTATGCAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTAAACCATATGGGAATGGAAATAACCGATCAGGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACAGAACTTAATAAAACTATTTACATTACAGAGGAGACAATGAGAGCAAAACAAGTGCTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGATGTTGTTAGCATGGCTAAAATTCTTACTACAACAAAACTTGATAGAGAACAAAGACAGCTCTTGGATGCTATGATATCTTCAGGAGATTTGGTTCTTCAACATATTACTGATATACTTGATCCTTCCAAGGCTGAGCCGGGTTAG
Protein sequence

>MsG0180000495.01.T01

MDQDILEEVTILEEPIIADFQRIVELTDYTDIASSQLANLTKHWEYKQANAVRLLREELDNLSKQREEVELKKCEILKDNNGFEEESYGGEKHPDSILDGVAIRKNDAVIQNKRIEIEAEYDDVVYWKHRSRDMEKRLEGSIRREEILKEKLQESTEIIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQLIHHLNAKFVFAIAMNSQDKELRYRFIYNHFPSLKEEDLIGKTDVEIFTGSGAKESQDFKREVMEKGIPAKREITFETELFGSKTFLLYAEPVFSKAGETIGVNHMGMEITDQVRKREKMAKLREEIAVQKAKETELNKTIYITEETMRAKQVLATMSHEIRSPLSDVVSMAKILTTTKLDREQRQLLDAMISSGDLVLQHITDILDPSKAEPG*