AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047814.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047814.01.T02 MTR_2g105410 91.628 215 2 1 1 199 152 366 1.36e-142 402
MsG0080047814.01.T02 MTR_1g111090 55.507 227 73 6 1 199 170 396 7.99e-71 220
MsG0080047814.01.T02 MTR_7g407040 51.818 220 83 5 1 199 153 370 2.12e-62 198
MsG0080047814.01.T01 MTR_2g105410 93.989 366 6 1 1 350 1 366 0.0 699
MsG0080047814.01.T01 MTR_1g111090 53.788 396 137 8 1 350 1 396 2.44e-125 365
MsG0080047814.01.T01 MTR_7g407040 49.604 379 153 8 1 350 1 370 2.68e-106 316
MsG0080047814.01.T01 MTR_7g037380 83.871 62 7 1 18 76 69 130 1.45e-26 104
MsG0080047814.01.T01 MTR_7g006500 58.065 62 24 2 122 183 53 112 4.33e-13 66.2
MsG0080047814.01.T03 MTR_2g105410 96.250 80 3 0 1 80 1 80 3.79e-50 162
MsG0080047814.01.T03 MTR_1g111090 68.421 76 24 0 1 76 1 76 9.40e-31 112
MsG0080047814.01.T03 MTR_7g037380 84.127 63 7 1 18 77 69 131 2.98e-29 103
MsG0080047814.01.T03 MTR_7g407040 63.158 76 28 0 1 76 1 76 8.01e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047814.01.T02 AT1G79650 65.138 218 55 4 1 199 156 371 1.03e-94 280
MsG0080047814.01.T02 AT1G79650 65.138 218 55 4 1 199 150 365 1.41e-94 280
MsG0080047814.01.T02 AT1G79650 65.138 218 55 4 1 199 180 395 3.45e-94 280
MsG0080047814.01.T02 AT1G79650 68.812 202 54 4 1 199 156 351 3.88e-94 278
MsG0080047814.01.T02 AT1G16190 60.268 224 55 7 1 199 131 345 1.49e-83 251
MsG0080047814.01.T02 AT1G16190 60.268 224 55 7 1 199 154 368 1.78e-83 252
MsG0080047814.01.T02 AT5G38470 57.589 224 68 7 1 199 156 377 5.95e-70 218
MsG0080047814.01.T02 AT3G02540 51.556 225 83 7 1 199 194 418 6.47e-64 203
MsG0080047814.01.T02 AT3G02540 51.556 225 83 7 1 199 195 419 6.64e-64 203
MsG0080047814.01.T02 AT5G38470 55.828 163 46 6 1 138 156 317 5.38e-42 144
MsG0080047814.01.T02 AT3G02540 53.846 104 42 3 1 98 195 298 4.63e-25 99.4
MsG0080047814.01.T02 AT5G16090 45.745 94 47 3 101 193 79 169 4.84e-18 78.2
MsG0080047814.01.T01 AT1G79650 66.578 374 98 8 1 350 1 371 9.22e-170 478
MsG0080047814.01.T01 AT1G79650 68.715 358 97 8 1 350 1 351 1.86e-169 476
MsG0080047814.01.T01 AT1G79650 66.220 373 95 8 1 350 1 365 3.28e-168 473
MsG0080047814.01.T01 AT1G79650 62.972 397 98 8 1 350 1 395 3.24e-166 469
MsG0080047814.01.T01 AT1G16190 59.091 396 88 10 1 350 1 368 4.80e-151 430
MsG0080047814.01.T01 AT1G16190 57.373 373 85 10 24 350 1 345 1.04e-134 387
MsG0080047814.01.T01 AT5G38470 53.385 384 138 11 1 350 1 377 3.98e-120 352
MsG0080047814.01.T01 AT3G02540 48.456 421 144 11 1 350 1 419 1.90e-116 344
MsG0080047814.01.T01 AT3G02540 48.086 418 149 11 1 350 1 418 4.26e-115 340
MsG0080047814.01.T01 AT5G38470 51.703 323 116 10 1 289 1 317 2.96e-91 276
MsG0080047814.01.T01 AT3G02540 48.000 300 103 7 1 249 1 298 7.39e-76 236
MsG0080047814.01.T01 AT5G16090 43.750 96 47 1 1 96 1 89 1.08e-19 85.5
MsG0080047814.01.T01 AT5G16090 45.745 94 47 3 252 344 79 169 1.61e-17 79.7
MsG0080047814.01.T03 AT1G79650 89.474 76 8 0 1 76 1 76 4.47e-44 146
MsG0080047814.01.T03 AT1G79650 89.474 76 8 0 1 76 1 76 6.01e-44 146
MsG0080047814.01.T03 AT1G79650 89.474 76 8 0 1 76 1 76 6.80e-44 146
MsG0080047814.01.T03 AT1G79650 89.474 76 8 0 1 76 1 76 1.10e-43 146
MsG0080047814.01.T03 AT1G16190 88.158 76 9 0 1 76 1 76 4.42e-43 144
MsG0080047814.01.T03 AT3G02540 63.158 76 28 0 1 76 1 76 6.19e-31 110
MsG0080047814.01.T03 AT3G02540 63.158 76 28 0 1 76 1 76 3.62e-30 110
MsG0080047814.01.T03 AT3G02540 63.158 76 28 0 1 76 1 76 3.66e-30 110
MsG0080047814.01.T03 AT1G16190 88.679 53 6 0 24 76 1 53 1.39e-27 102
MsG0080047814.01.T03 AT5G38470 57.895 76 31 1 1 76 1 75 9.51e-24 92.4
MsG0080047814.01.T03 AT5G38470 57.895 76 31 1 1 76 1 75 1.53e-23 92.4
MsG0080047814.01.T03 AT5G16090 50.000 76 38 0 1 76 1 76 1.40e-21 83.6

Find 24 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTAAATTACTTTCAATTT+AGG 0.096625 contig110end:+29785 MsG0080047814.01.T02:intron
TCTAAATTACTTTCAATTTA+GGG 0.227691 contig110end:+29786 MsG0080047814.01.T02:intron
ATTATTATTATATTATTATA+TGG 0.242472 contig110end:+29750 MsG0080047814.01.T02:intron
TCTGGTGTTGGCACAGTTAT+AGG 0.298020 contig110end:-31265 None:intergenic
TCTTGTTGTCATGCTTAGTA+AGG 0.396216 contig110end:+29726 MsG0080047814.01.T02:five_prime_UTR
TGTACTACAGGTGTGGAATC+TGG 0.428565 contig110end:-31283 None:intergenic
AAGAATATTGAAGACATTCA+AGG 0.452792 contig110end:+29601 MsG0080047814.01.T02:five_prime_UTR
AGTAAAGCCTTGGGATCTGC+TGG 0.457633 contig110end:+31124 MsG0080047814.01.T02:five_prime_UTR
CTATTTGCAGAGTAAAGCCT+TGG 0.463189 contig110end:+31114 MsG0080047814.01.T02:intron
GACAATAAAGTCTCTGAAGA+TGG 0.470434 contig110end:+29700 MsG0080047814.01.T02:five_prime_UTR
CTAAATTACTTTCAATTTAG+GGG 0.501738 contig110end:+29787 MsG0080047814.01.T02:intron
ACTCACTGAGTCTGTACTAC+AGG 0.513693 contig110end:-31295 None:intergenic
TATTTGCAGAGTAAAGCCTT+GGG 0.523624 contig110end:+31115 MsG0080047814.01.T02:intron
ATCAGCAATTGTTGTCCGCA+TGG 0.538362 contig110end:-29637 None:intergenic
TGCTGGAACTTCATCTACTC+AGG 0.553374 contig110end:+31141 MsG0080047814.01.T02:five_prime_UTR
TCAGCAATTGTTGTCCGCAT+GGG 0.565758 contig110end:-29636 None:intergenic
CAACAATTGCTGATTCACAA+TGG 0.594059 contig110end:+29646 MsG0080047814.01.T02:five_prime_UTR
GGTGTTGGCACAGTTATAGG+TGG 0.606530 contig110end:-31262 None:intergenic
TGAAGTTCCAGCAGATCCCA+AGG 0.610131 contig110end:-31131 None:intergenic
CAGTCACTAACTCATACAAG+AGG 0.612533 contig110end:-31213 None:intergenic
CTGAGTCTGTACTACAGGTG+TGG 0.617878 contig110end:-31290 None:intergenic
AGTTATAGGTGGATTGCTAA+CGG 0.630709 contig110end:-31251 None:intergenic
ACAGGTGTGGAATCTGGTGT+TGG 0.666566 contig110end:-31277 None:intergenic
GGAAAAGATAATTACCCATG+CGG 0.704659 contig110end:+29622 MsG0080047814.01.T02:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATATTATTATA+TGG + contig110end:29750-29769 MsG0080047814.01.T02:intron 0.0%
!! AAAAAAATTGAATGAATATT+GGG - contig110end:29544-29563 None:intergenic 10.0%
!! TTAGAATGTTATATATAATT+AGG - contig110end:29913-29932 None:intergenic 10.0%
!!! TTCTATTATAAATAACTTTT+CGG + contig110end:33380-33399 MsG0080047814.01.T02:intron 10.0%
!!! TTTTTGTAACTTATTTTATT+TGG + contig110end:31362-31381 MsG0080047814.01.T02:intron 10.0%
!! AAAAAATTGAATGAATATTG+GGG - contig110end:29543-29562 None:intergenic 15.0%
!! AAGAATGTTAATAAAAAAAG+AGG - contig110end:29503-29522 None:intergenic 15.0%
!! AATAATAAACATACAATACA+AGG + contig110end:30046-30065 MsG0080047814.01.T02:intron 15.0%
!! ATCTAAATTACTTTCAATTT+AGG + contig110end:29785-29804 MsG0080047814.01.T02:intron 15.0%
!! ATTAATTATAATATTAGACC+AGG - contig110end:31613-31632 None:intergenic 15.0%
!! ATTTATAAAAATAAATGGAG+AGG + contig110end:33580-33599 MsG0080047814.01.T02:intron 15.0%
!! CAAAAAAATTGAATGAATAT+TGG - contig110end:29545-29564 None:intergenic 15.0%
!! CAAAATCATTAGTAAATAAA+TGG - contig110end:34223-34242 None:intergenic 15.0%
!! GGTAAAAATAATAATTTGAA+TGG + contig110end:32807-32826 MsG0080047814.01.T02:intron 15.0%
!! TACAAAAAAACATAAGTTTA+TGG - contig110end:31350-31369 None:intergenic 15.0%
!! TCTAAATTACTTTCAATTTA+GGG + contig110end:29786-29805 MsG0080047814.01.T02:intron 15.0%
!! TCTCCATTTATAAAAATAAA+TGG + contig110end:33575-33594 MsG0080047814.01.T02:intron 15.0%
!! TTAACAATTATTTATATGCA+GGG + contig110end:32655-32674 MsG0080047814.01.T02:intron 15.0%
!! TTTAACAATTATTTATATGC+AGG + contig110end:32654-32673 MsG0080047814.01.T02:intron 15.0%
!!! ATGAACACTATTTTAATTTA+GGG - contig110end:32285-32304 None:intergenic 15.0%
!!! ATTTACTAATGATTTTGTAT+TGG + contig110end:34226-34245 MsG0080047814.01.T02:three_prime_UTR 15.0%
!!! CTCATTTTTTAATATCTTTT+TGG + contig110end:31175-31194 MsG0080047814.01.T02:five_prime_UTR 15.0%
!!! TATGAACACTATTTTAATTT+AGG - contig110end:32286-32305 None:intergenic 15.0%
!!! TCTCCATTTATTTTTATAAA+TGG - contig110end:33581-33600 None:intergenic 15.0%
!! AAAAATTGAATGAATATTGG+GGG - contig110end:29542-29561 None:intergenic 20.0%
!! ATCAAATAAGATAAATCACA+AGG - contig110end:32630-32649 None:intergenic 20.0%
!! ATTATTATTGAACAGAACTT+TGG - contig110end:32050-32069 None:intergenic 20.0%
!! CTAAATTACTTTCAATTTAG+GGG + contig110end:29787-29806 MsG0080047814.01.T02:intron 20.0%
!! TCGTAGAATATAAATTTAGT+TGG + contig110end:31042-31061 MsG0080047814.01.T02:intron 20.0%
!! TCTTTAATTATTGTGTATGA+TGG + contig110end:30463-30482 MsG0080047814.01.T02:intron 20.0%
!! TGAAACTAATTAATGATGTT+GGG + contig110end:33493-33512 MsG0080047814.01.T02:intron 20.0%
!! TTATGGTTGTAATTTGAATT+TGG + contig110end:31587-31606 MsG0080047814.01.T02:intron 20.0%
!! TTGAAACTAATTAATGATGT+TGG + contig110end:33492-33511 MsG0080047814.01.T02:intron 20.0%
!!! CAAATTATTATTTTTACCTG+TGG - contig110end:32805-32824 None:intergenic 20.0%
!!! GTTTTGTTATTATCAGATAA+TGG + contig110end:29570-29589 MsG0080047814.01.T02:intron 20.0%
!!! TATTAGAGATAATTTTGATC+AGG + contig110end:33752-33771 MsG0080047814.01.T02:intron 20.0%
!!! TCAATTTCATTTTTTTGCAA+AGG - contig110end:33907-33926 None:intergenic 20.0%
!!! TGTATTACTGATTATAAGAA+TGG - contig110end:31551-31570 None:intergenic 20.0%
! AAAATAGATAGTTAGATACC+TGG - contig110end:33095-33114 None:intergenic 25.0%
! AACTGAACATTACTCTTAAA+AGG - contig110end:30332-30351 None:intergenic 25.0%
! AAGAATATTGAAGACATTCA+AGG + contig110end:29601-29620 MsG0080047814.01.T02:five_prime_UTR 25.0%
! ACAAAACTATGAATCATTGT+AGG - contig110end:34096-34115 None:intergenic 25.0%
! ACATTGAAATGTATTTCAGA+AGG - contig110end:32378-32397 None:intergenic 25.0%
! AGAAGAAAAGAAAAAAGAGA+AGG + contig110end:29293-29312 MsG0080047814.01.T02:five_prime_UTR 25.0%
! AGACAAAATCTACATAAAGA+TGG - contig110end:31510-31529 None:intergenic 25.0%
! AGGTCATGGTAAAATTAAAT+TGG + contig110end:31704-31723 MsG0080047814.01.T02:intron 25.0%
! ATACACACAAAATATAGATG+TGG - contig110end:33538-33557 None:intergenic 25.0%
! ATGATTGTAAAATGCAAAGA+TGG - contig110end:33339-33358 None:intergenic 25.0%
! ATTCTTGATGCTAAAAGTTA+TGG + contig110end:31570-31589 MsG0080047814.01.T02:intron 25.0%
! GAAGAAAAGAAAAAAGAGAA+GGG + contig110end:29294-29313 MsG0080047814.01.T02:five_prime_UTR 25.0%
! GAGAGAAATAATTGAATAGA+TGG - contig110end:31653-31672 None:intergenic 25.0%
! GGTCATGGTAAAATTAAATT+GGG + contig110end:31705-31724 MsG0080047814.01.T02:intron 25.0%
! TAAAAATGAATCAGCACATA+TGG - contig110end:33934-33953 None:intergenic 25.0%
! TAACAACATTGAAGTAAAGT+AGG - contig110end:30403-30422 None:intergenic 25.0%
! TACACACAAAATATAGATGT+GGG - contig110end:33537-33556 None:intergenic 25.0%
! TATAAGAATTTAATGCAGCA+TGG + contig110end:30008-30027 MsG0080047814.01.T02:intron 25.0%
! TCCACTTATAAGTTGTTTAA+CGG + contig110end:29836-29855 MsG0080047814.01.T02:intron 25.0%
! TTATATTCTACGACCTAAAT+TGG - contig110end:31035-31054 None:intergenic 25.0%
!! AATTCAAATCCTCTTTTTGA+AGG + contig110end:30286-30305 MsG0080047814.01.T02:intron 25.0%
!! AATTCGAATCCTTTTTCTAA+AGG + contig110end:30252-30271 MsG0080047814.01.T02:intron 25.0%
!! AATTTTTCTTCTGTCTTTCT+AGG + contig110end:34153-34172 MsG0080047814.01.T02:three_prime_UTR 25.0%
!! ATATTTAGTTTCAAGCATTG+CGG + contig110end:33040-33059 MsG0080047814.01.T02:intron 25.0%
!! ATTCAAATCCTCTTTTTGAA+GGG + contig110end:30287-30306 MsG0080047814.01.T02:intron 25.0%
!! ATTCGAATCCTTTTTCTAAA+GGG + contig110end:30253-30272 MsG0080047814.01.T02:intron 25.0%
!! ATTTTTCTTCTGTCTTTCTA+GGG + contig110end:34154-34173 MsG0080047814.01.T02:three_prime_UTR 25.0%
!! CTCAAAAAAGTACAAAGTAA+CGG - contig110end:32873-32892 None:intergenic 25.0%
!! TATAATAGAAGCATGACTAT+GGG - contig110end:33370-33389 None:intergenic 25.0%
!! TATACCACTATAGCATTTTA+GGG + contig110end:30575-30594 MsG0080047814.01.T02:intron 25.0%
!! TCTATTCTTCATTTTAGACT+AGG - contig110end:32169-32188 None:intergenic 25.0%
!! TTATAATAGAAGCATGACTA+TGG - contig110end:33371-33390 None:intergenic 25.0%
!! TTTAGGGTGTAACTATAATT+AGG - contig110end:32269-32288 None:intergenic 25.0%
!!! AATGATTCATAGTTTTGTTC+AGG + contig110end:34098-34117 MsG0080047814.01.T02:three_prime_UTR 25.0%
!!! AATTTAATTTTACCATGACC+TGG - contig110end:31705-31724 None:intergenic 25.0%
!!! AGAGATTATTTTTTCCTTCA+GGG - contig110end:30938-30957 None:intergenic 25.0%
!!! CCTTAAATCCTTTTTTTGAA+GGG + contig110end:30219-30238 MsG0080047814.01.T02:intron 25.0%
!!! GTTTTATTGCTATGTACTTT+AGG + contig110end:30439-30458 MsG0080047814.01.T02:intron 25.0%
!!! TAGAGATTATTTTTTCCTTC+AGG - contig110end:30939-30958 None:intergenic 25.0%
!!! TCCTTAAATCCTTTTTTTGA+AGG + contig110end:30218-30237 MsG0080047814.01.T02:intron 25.0%
!!! TGTTTTTTGGGATCTAATTT+AGG - contig110end:30990-31009 None:intergenic 25.0%
AAAAGAAAAAAGAGAAGGGA+AGG + contig110end:29298-29317 MsG0080047814.01.T02:five_prime_UTR 30.0%
AAAATGCTATAGTGGTATAG+CGG - contig110end:30574-30593 None:intergenic 30.0%
AAAGAAAAAAGAGAAGGGAA+GGG + contig110end:29299-29318 MsG0080047814.01.T02:five_prime_UTR 30.0%
AAAGTATACGACTATTGCTA+GGG + contig110end:29352-29371 MsG0080047814.01.T02:five_prime_UTR 30.0%
AACAGTAAAATGGTAGATTG+TGG - contig110end:31094-31113 None:intergenic 30.0%
AAGTTTATGGAAAAGCTACA+CGG - contig110end:31337-31356 None:intergenic 30.0%
ATACCTCTAGCAAAACTATA+GGG + contig110end:30646-30665 MsG0080047814.01.T02:intron 30.0%
ATTCAACAACTTATGGACAT+GGG + contig110end:32476-32495 MsG0080047814.01.T02:intron 30.0%
CATTTACACCCTTCAAAAAA+AGG - contig110end:30230-30249 None:intergenic 30.0%
CCCTTCAAAAAAAGGATTTA+AGG - contig110end:30222-30241 None:intergenic 30.0%
CTGCAAATAGAACAGTAAAA+TGG - contig110end:31104-31123 None:intergenic 30.0%
GAAACTAAATATGCAGAAGA+TGG - contig110end:33032-33051 None:intergenic 30.0%
GAAACTTGAGTTAGTATGTA+GGG - contig110end:32247-32266 None:intergenic 30.0%
GTTAAACAACTTATAAGTGG+AGG - contig110end:29837-29856 None:intergenic 30.0%
TATTCAACAACTTATGGACA+TGG + contig110end:32475-32494 MsG0080047814.01.T02:intron 30.0%
TCTCTCTCTCAAAACTATAA+GGG + contig110end:31667-31686 MsG0080047814.01.T02:intron 30.0%
TGTGTGTATCTCTTTCTAAA+TGG + contig110end:33549-33568 MsG0080047814.01.T02:intron 30.0%
TGTTTCTTTATCTCTCCAAA+TGG - contig110end:33465-33484 None:intergenic 30.0%
TTCTCTCTCTCAAAACTATA+AGG + contig110end:31666-31685 MsG0080047814.01.T02:intron 30.0%
! AATTTGTTTATTGCAGCAAG+AGG - contig110end:32319-32338 None:intergenic 30.0%
! ACAAGACTTGTTCAAGTATA+AGG - contig110end:32101-32120 None:intergenic 30.0%
! AGTGTTACTACAGATACTTA+TGG + contig110end:32407-32426 MsG0080047814.01.T02:intron 30.0%
! ATACCACTATAGCATTTTAG+GGG + contig110end:30576-30595 MsG0080047814.01.T02:intron 30.0%
! ATCATCTAATACCTGTCTTT+TGG + contig110end:33119-33138 MsG0080047814.01.T02:intron 30.0%
! ATGTAGATTTTGTCTGATGA+AGG + contig110end:31515-31534 MsG0080047814.01.T02:intron 30.0%
! ATTTTCTCAGCCTAAAGTTT+GGG - contig110end:32146-32165 None:intergenic 30.0%
! CATTTACACCCTTTAGAAAA+AGG - contig110end:30264-30283 None:intergenic 30.0%
! CTATACCACTATAGCATTTT+AGG + contig110end:30574-30593 MsG0080047814.01.T02:intron 30.0%
! TATACTTGAACAAGTCTTGT+AGG + contig110end:32101-32120 MsG0080047814.01.T02:intron 30.0%
! TCTTTCTAGGGAAATTTATG+TGG + contig110end:34166-34185 MsG0080047814.01.T02:three_prime_UTR 30.0%
! TTCTCAACAGATTAGGTTTT+AGG + contig110end:30697-30716 MsG0080047814.01.T02:intron 30.0%
!! TAGAGATAATTTTGATCAGG+CGG + contig110end:33755-33774 MsG0080047814.01.T02:intron 30.0%
!!! CATTTTTTTGCAAAGGCATA+AGG - contig110end:33900-33919 None:intergenic 30.0%
!!! TTTTGAGTTGAAACTCTTTC+AGG + contig110end:32886-32905 MsG0080047814.01.T02:intron 30.0%
AAACTATCACAGACCATACA+TGG - contig110end:33310-33329 None:intergenic 35.0%
AACATACATACCGAATCAGA+AGG - contig110end:29477-29496 None:intergenic 35.0%
AACTACTTACTGGAAAATGC+TGG + contig110end:34046-34065 MsG0080047814.01.T02:CDS 35.0%
AATGAAGTTGTACACAAGTC+TGG - contig110end:31888-31907 None:intergenic 35.0%
ACCTGTGGAAACATATTCAA+GGG - contig110end:32790-32809 None:intergenic 35.0%
ACTACTTACTGGAAAATGCT+GGG + contig110end:34047-34066 MsG0080047814.01.T02:CDS 35.0%
AGACAAAAGCCATACTTTGT+AGG - contig110end:31433-31452 None:intergenic 35.0%
AGTATACTGCTTTCCATGTA+TGG + contig110end:33294-33313 MsG0080047814.01.T02:intron 35.0%
ATACACCGAAATCCTAATAG+CGG - contig110end:30195-30214 None:intergenic 35.0%
ATGAAACAAAATGCCTACCT+GGG - contig110end:32969-32988 None:intergenic 35.0%
ATGTGGTAGAGTTTCTGATT+TGG + contig110end:34183-34202 MsG0080047814.01.T02:three_prime_UTR 35.0%
ATTTGTACAACCCCAACTTA+GGG - contig110end:31808-31827 None:intergenic 35.0%
CAAACAAATGACCAAAAGAC+AGG - contig110end:33133-33152 None:intergenic 35.0%
CATTAACACCCTTCAAAAAG+AGG - contig110end:30298-30317 None:intergenic 35.0%
CTGTTTCAGTTGGATTACTT+GGG - contig110end:32723-32742 None:intergenic 35.0%
GAATCAACAATGAGCAGTTT+AGG - contig110end:32595-32614 None:intergenic 35.0%
GAGTTAGTATGTAGGGATTT+AGG - contig110end:32240-32259 None:intergenic 35.0%
GATACCTCTAGCAAAACTAT+AGG + contig110end:30645-30664 MsG0080047814.01.T02:intron 35.0%
GATGAACTCTGATTTCGAAA+TGG - contig110end:29455-29474 None:intergenic 35.0%
GCAGACTATTCAACAACTTA+TGG + contig110end:32469-32488 MsG0080047814.01.T02:intron 35.0%
GCCGTTAAACAACTTATAAG+TGG - contig110end:29840-29859 None:intergenic 35.0%
GGAAAAGATAATTACCCATG+CGG + contig110end:29622-29641 MsG0080047814.01.T02:five_prime_UTR 35.0%
GGAAACTTGAGTTAGTATGT+AGG - contig110end:32248-32267 None:intergenic 35.0%
GGCAAAAGATGTAAATGACA+AGG - contig110end:32852-32871 None:intergenic 35.0%
GTAGGAATGGAGATCTAAAA+TGG - contig110end:33443-33462 None:intergenic 35.0%
GTTGTAATTTGAATTTGGCC+TGG + contig110end:31592-31611 MsG0080047814.01.T02:intron 35.0%
TACCTGTGGAAACATATTCA+AGG - contig110end:32791-32810 None:intergenic 35.0%
TACTACAGATACTTATGGAC+AGG + contig110end:32412-32431 MsG0080047814.01.T02:five_prime_UTR 35.0%
TATTTGCAGAGTAAAGCCTT+GGG + contig110end:31115-31134 MsG0080047814.01.T02:intron 35.0%
TCAGATCACAGAAAATCATC+AGG - contig110end:31735-31754 None:intergenic 35.0%
TCCATTATTCCATTCGATTC+CGG + contig110end:29384-29403 MsG0080047814.01.T02:five_prime_UTR 35.0%
TCTTTATCTCTCCAAATGGT+AGG - contig110end:33461-33480 None:intergenic 35.0%
TGTAGAGTTCTCAACAGATT+AGG + contig110end:30690-30709 MsG0080047814.01.T02:intron 35.0%
TTACCTTCATGTCACAAACA+TGG - contig110end:33623-33642 None:intergenic 35.0%
TTAGATACCTGGAGAATTTG+TGG - contig110end:33084-33103 None:intergenic 35.0%
TTGTGAGTAACCCAAACTTT+AGG + contig110end:32133-32152 MsG0080047814.01.T02:intron 35.0%
! AAAGTTTGGGTTACTCACAA+TGG - contig110end:32133-32152 None:intergenic 35.0%
! AATGGAGATCTAAAATGGAG+AGG - contig110end:33438-33457 None:intergenic 35.0%
! AGCATTTTCCAGTAAGTAGT+TGG - contig110end:34047-34066 None:intergenic 35.0%
! CTTTTGTCTCTATGTTTCTC+TGG + contig110end:31444-31463 MsG0080047814.01.T02:intron 35.0%
! GAAAGTATACGACTATTGCT+AGG + contig110end:29351-29370 MsG0080047814.01.T02:five_prime_UTR 35.0%
! GACAATAAAGTCTCTGAAGA+TGG + contig110end:29700-29719 MsG0080047814.01.T02:five_prime_UTR 35.0%
! GATTTTCTCAGCCTAAAGTT+TGG - contig110end:32147-32166 None:intergenic 35.0%
! GGGGTTGTACAAATGTTTTT+GGG + contig110end:31814-31833 MsG0080047814.01.T02:intron 35.0%
! GTAGGGATTTAGGTTTACTT+AGG - contig110end:32230-32249 None:intergenic 35.0%
! TCACAGTGAAGACTTTGAAA+GGG + contig110end:29427-29446 MsG0080047814.01.T02:five_prime_UTR 35.0%
! TCTTGTTGTCATGCTTAGTA+AGG + contig110end:29726-29745 MsG0080047814.01.T02:five_prime_UTR 35.0%
! TGGGGTTGTACAAATGTTTT+TGG + contig110end:31813-31832 MsG0080047814.01.T02:intron 35.0%
! TTTTCTCCTTTTTGCAAGGA+GGG + contig110end:34122-34141 MsG0080047814.01.T02:three_prime_UTR 35.0%
!! AGTTATAGGTGGATTGCTAA+CGG - contig110end:31254-31273 None:intergenic 35.0%
!! CAACAATTGCTGATTCACAA+TGG + contig110end:29646-29665 MsG0080047814.01.T02:five_prime_UTR 35.0%
!! GTAGAGTTTCTGATTTGGAT+TGG + contig110end:34188-34207 MsG0080047814.01.T02:three_prime_UTR 35.0%
!!! TTGTACAAATGTTTTTGGGC+TGG + contig110end:31818-31837 MsG0080047814.01.T02:intron 35.0%
!!! TTTTGCTAGAGGTATCTTGT+AGG - contig110end:30641-30660 None:intergenic 35.0%
AAACATGGCAAAGACGAGTT+AGG - contig110end:33608-33627 None:intergenic 40.0%
AAATGGAGAGGATCTTGACT+CGG - contig110end:33426-33445 None:intergenic 40.0%
AGAATCCTAATCGAACCACA+GGG + contig110end:32186-32205 MsG0080047814.01.T02:intron 40.0%
AGATCTCCATTCCTACCATT+TGG + contig110end:33447-33466 MsG0080047814.01.T02:intron 40.0%
AGTAATCCAACTGAAACAGG+TGG + contig110end:32724-32743 MsG0080047814.01.T02:CDS 40.0%
ATATTCAAGGGAGACGAGTT+AGG - contig110end:32778-32797 None:intergenic 40.0%
ATCCAATCCACAAATTCTCC+AGG + contig110end:33074-33093 MsG0080047814.01.T02:intron 40.0%
ATCTCTCCAAATGGTAGGAA+TGG - contig110end:33456-33475 None:intergenic 40.0%
ATTTCAGAAGGTTTGACGAC+AGG - contig110end:32366-32385 None:intergenic 40.0%
CAAAAATGCCTCTATGACAG+AGG - contig110end:33996-34015 None:intergenic 40.0%
CAGAGTTCATCCTTCTGATT+CGG + contig110end:29464-29483 MsG0080047814.01.T02:five_prime_UTR 40.0%
CAGTCACTAACTCATACAAG+AGG - contig110end:31216-31235 None:intergenic 40.0%
CATTTGTACAACCCCAACTT+AGG - contig110end:31809-31828 None:intergenic 40.0%
CCAAGTAATCCAACTGAAAC+AGG + contig110end:32721-32740 MsG0080047814.01.T02:CDS 40.0%
CCTGTTTCAGTTGGATTACT+TGG - contig110end:32724-32743 None:intergenic 40.0%
CTACTTACTGGAAAATGCTG+GGG + contig110end:34048-34067 MsG0080047814.01.T02:CDS 40.0%
CTATTTGCAGAGTAAAGCCT+TGG + contig110end:31114-31133 MsG0080047814.01.T02:intron 40.0%
CTCACAGTGAAGACTTTGAA+AGG + contig110end:29426-29445 MsG0080047814.01.T02:five_prime_UTR 40.0%
CTCTTTCAGGAGACAATTTC+TGG + contig110end:32899-32918 MsG0080047814.01.T02:intron 40.0%
GATGAAACAAAATGCCTACC+TGG - contig110end:32970-32989 None:intergenic 40.0%
GCTGCTTCAAATTTAGTTGC+TGG + contig110end:32434-32453 MsG0080047814.01.T02:five_prime_UTR 40.0%
GGTTAATCTTAGCACGTACT+CGG - contig110end:30900-30919 None:intergenic 40.0%
GTAATCCAACTGAAACAGGT+GGG + contig110end:32725-32744 MsG0080047814.01.T02:CDS 40.0%
TAAATGCTACAGATGCTTCC+TGG - contig110end:33672-33691 None:intergenic 40.0%
TAATCCAACTGAAACAGGTG+GGG + contig110end:32726-32745 MsG0080047814.01.T02:CDS 40.0%
TACCTGGAGAATTTGTGGAT+TGG - contig110end:33079-33098 None:intergenic 40.0%
TAGAATCCTAATCGAACCAC+AGG + contig110end:32185-32204 MsG0080047814.01.T02:intron 40.0%
TATTCAAGGGAGACGAGTTA+GGG - contig110end:32777-32796 None:intergenic 40.0%
TATTCCATTCGATTCCGGAT+CGG + contig110end:29389-29408 MsG0080047814.01.T02:five_prime_UTR 40.0%
TCAATAAGTCTCAAGAGACC+TGG - contig110end:33214-33233 None:intergenic 40.0%
TCAGGGACTTTATACTCTTC+TGG - contig110end:30921-30940 None:intergenic 40.0%
TCCCTTGAATATGTTTCCAC+AGG + contig110end:32786-32805 MsG0080047814.01.T02:CDS 40.0%
TCCGGAATCGAATGGAATAA+TGG - contig110end:29388-29407 None:intergenic 40.0%
TGAAACAAAATGCCTACCTG+GGG - contig110end:32968-32987 None:intergenic 40.0%
TTGCCATGTTTGTGACATGA+AGG + contig110end:33617-33636 MsG0080047814.01.T02:intron 40.0%
TTTACCATGACCTGGTCTAT+TGG - contig110end:31697-31716 None:intergenic 40.0%
! AGATAGAACTAGCCTGCATT+TGG + contig110end:30814-30833 MsG0080047814.01.T02:intron 40.0%
! AGGCTTTTCTCCTTTTTGCA+AGG + contig110end:34118-34137 MsG0080047814.01.T02:three_prime_UTR 40.0%
! CGTACTCGGAAATCTTGTTT+AGG - contig110end:30886-30905 None:intergenic 40.0%
! CTTTTCTCCTTTTTGCAAGG+AGG + contig110end:34121-34140 MsG0080047814.01.T02:three_prime_UTR 40.0%
! GAAGAGTATAAAGTCCCTGA+AGG + contig110end:30921-30940 MsG0080047814.01.T02:intron 40.0%
! GGCTGAATTTTGCACTATCA+GGG + contig110end:29808-29827 MsG0080047814.01.T02:intron 40.0%
! TGTTTCGTTCAAAGCTCTGA+AGG + contig110end:31763-31782 MsG0080047814.01.T02:intron 40.0%
!! AATGCAGGCTAGTTCTATCT+TGG - contig110end:30814-30833 None:intergenic 40.0%
!! CTACCCTATAGTTTTGCTAG+AGG - contig110end:30652-30671 None:intergenic 40.0%
!! GTTTCGTTCAAAGCTCTGAA+GGG + contig110end:31764-31783 MsG0080047814.01.T02:intron 40.0%
!! TATAGTGGTATAGCGGATAG+CGG - contig110end:30567-30586 None:intergenic 40.0%
!!! AGGGTGACGTAGTGTTTTTT+GGG - contig110end:31002-31021 None:intergenic 40.0%
!!! CTCTGTCATAGAGGCATTTT+TGG + contig110end:33994-34013 MsG0080047814.01.T02:CDS 40.0%
!!! GGTAATGTTTTGACCTGTTG+TGG + contig110end:33638-33657 MsG0080047814.01.T02:intron 40.0%
AAACCACCCTCCTTGCAAAA+AGG - contig110end:34131-34150 None:intergenic 45.0%
AACTTAGGGTTGGGCAGAAT+TGG - contig110end:31794-31813 None:intergenic 45.0%
AAGCAACATGTGAGAGAAGC+GGG - contig110end:30842-30861 None:intergenic 45.0%
AAGGTTTGACGACAGGATAG+AGG - contig110end:32359-32378 None:intergenic 45.0%
AAGTAATCTACAGCACGCTC+TGG - contig110end:32560-32579 None:intergenic 45.0%
AATTCTGCCCAACCCTAAGT+TGG + contig110end:31793-31812 MsG0080047814.01.T02:intron 45.0%
ACTCACTGAGTCTGTACTAC+AGG - contig110end:31298-31317 None:intergenic 45.0%
AGCAGCAGAAATTGCTGTAC+CGG + contig110end:32687-32706 MsG0080047814.01.T02:CDS 45.0%
AGTGATGTCTGAATGCAGTC+AGG - contig110end:31914-31933 None:intergenic 45.0%
ATCAGCAATTGTTGTCCGCA+TGG - contig110end:29640-29659 None:intergenic 45.0%
ATCTAGTACAGCATTCCCTG+TGG - contig110end:32204-32223 None:intergenic 45.0%
ATGTGACCGTGATGAGCAAT+TGG + contig110end:34018-34037 MsG0080047814.01.T02:CDS 45.0%
ATTCTGCCCAACCCTAAGTT+GGG + contig110end:31794-31813 MsG0080047814.01.T02:intron 45.0%
ATTGGCAGCCAACTACTTAC+TGG + contig110end:34036-34055 MsG0080047814.01.T02:CDS 45.0%
CAACAACTTATGGACATGGG+TGG + contig110end:32479-32498 MsG0080047814.01.T02:intron 45.0%
CCTGTTGTGGTATCTAATCC+AGG + contig110end:33651-33670 MsG0080047814.01.T02:intron 45.0%
CGACAGAGGAATAGAGTGAA+AGG - contig110end:29862-29881 None:intergenic 45.0%
CTGTCTCATTGCCATGAGAA+AGG + contig110end:31862-31881 MsG0080047814.01.T02:intron 45.0%
GAAGCAACATGTGAGAGAAG+CGG - contig110end:30843-30862 None:intergenic 45.0%
GACGACAGGATAGAGGTAAA+TGG - contig110end:32352-32371 None:intergenic 45.0%
GAGCCCCTAAAATGCTATAG+TGG - contig110end:30582-30601 None:intergenic 45.0%
GCTACACTATTCTGCTAGAG+TGG - contig110end:30088-30107 None:intergenic 45.0%
GTGATGAATGTTGTCGACAG+AGG - contig110end:29876-29895 None:intergenic 45.0%
GTGATGTCTGAATGCAGTCA+GGG - contig110end:31913-31932 None:intergenic 45.0%
GTTGTGGCACCTACAAAGTA+TGG + contig110end:31421-31440 MsG0080047814.01.T02:intron 45.0%
TACAACCCCAACTTAGGGTT+GGG - contig110end:31803-31822 None:intergenic 45.0%
TACCTATGACATGCAGCTAG+AGG + contig110end:33952-33971 MsG0080047814.01.T02:intron 45.0%
TCAGCAATTGTTGTCCGCAT+GGG - contig110end:29639-29658 None:intergenic 45.0%
TCGAAAAAGAGCTGTAGCGA+TGG + contig110end:29959-29978 MsG0080047814.01.T02:intron 45.0%
TCTATTGCAGCCTGTACTTC+AGG + contig110end:33171-33190 MsG0080047814.01.T02:intron 45.0%
TGATAGAGCCTCTGTCATAG+AGG + contig110end:33985-34004 MsG0080047814.01.T02:CDS 45.0%
TGCTGGAACTTCATCTACTC+AGG + contig110end:31141-31160 MsG0080047814.01.T02:five_prime_UTR 45.0%
TGTACTACAGGTGTGGAATC+TGG - contig110end:31286-31305 None:intergenic 45.0%
TGTGTGAGCAAGAACACAAC+AGG - contig110end:30361-30380 None:intergenic 45.0%
TTCTGCTAGAGTGGCACTAT+TGG - contig110end:30079-30098 None:intergenic 45.0%
! ACAGCAATTTCTGCTGCTTC+AGG - contig110end:32685-32704 None:intergenic 45.0%
! CCTGGATTAGATACCACAAC+AGG - contig110end:33654-33673 None:intergenic 45.0%
! GGAAAATGCTGGGGATTTTG+AGG + contig110end:34057-34076 MsG0080047814.01.T02:CDS 45.0%
! GGGCTGAATTTTGCACTATC+AGG + contig110end:29807-29826 MsG0080047814.01.T02:intron 45.0%
! GTTTCAAGCATTGCGGACAA+TGG + contig110end:33047-33066 MsG0080047814.01.T02:intron 45.0%
!! TCTGGTGTTGGCACAGTTAT+AGG - contig110end:31268-31287 None:intergenic 45.0%
!! TTACTTGGGTATTGAGCAGC+CGG - contig110end:32709-32728 None:intergenic 45.0%
!!! GAGGGTGACGTAGTGTTTTT+TGG - contig110end:31003-31022 None:intergenic 45.0%
ACAACCGGTATTGCTGACAG+CGG - contig110end:30148-30167 None:intergenic 50.0%
ACAGGTGTGGAATCTGGTGT+TGG - contig110end:31280-31299 None:intergenic 50.0%
AGCCTCTAGCTGCATGTCAT+AGG - contig110end:33957-33976 None:intergenic 50.0%
AGTAAAGCCTTGGGATCTGC+TGG + contig110end:31124-31143 MsG0080047814.01.T02:five_prime_UTR 50.0%
ATGTGGGTCCTACCAACAAG+TGG - contig110end:33521-33540 None:intergenic 50.0%
CAAACCGCTGTCAGCAATAC+CGG + contig110end:30141-30160 MsG0080047814.01.T02:intron 50.0%
CAACTTATGGACATGGGTGG+TGG + contig110end:32482-32501 MsG0080047814.01.T02:intron 50.0%
CAAGCCAATAGACCAGGTCA+TGG + contig110end:31690-31709 MsG0080047814.01.T02:intron 50.0%
CGCGTCCGCTATTAGGATTT+CGG + contig110end:30187-30206 MsG0080047814.01.T02:intron 50.0%
CTAAATTGGCCCCAGAGAGA+GGG - contig110end:31021-31040 None:intergenic 50.0%
CTAGCAGAATAGTGTAGCCG+TGG + contig110end:30090-30109 MsG0080047814.01.T02:intron 50.0%
CTGAGTCTGTACTACAGGTG+TGG - contig110end:31293-31312 None:intergenic 50.0%
CTTCATGACTGACACCGATC+CGG - contig110end:29406-29425 None:intergenic 50.0%
CTTCTTGAGGAACAATCCCC+AGG + contig110end:32949-32968 MsG0080047814.01.T02:CDS 50.0%
GACATGCAGCTAGAGGCTAT+GGG + contig110end:33959-33978 MsG0080047814.01.T02:intron 50.0%
GAGCTCGGAAAGCAAAATCC+AGG + contig110end:33193-33212 MsG0080047814.01.T02:CDS 50.0%
GCATTCCCTGTGGTTCGATT+AGG - contig110end:32194-32213 None:intergenic 50.0%
GGCGTCACATTAACAGCATG+AGG - contig110end:33792-33811 None:intergenic 50.0%
GTACAACCCCAACTTAGGGT+TGG - contig110end:31804-31823 None:intergenic 50.0%
TAAGGGCAAGCCAATAGACC+AGG + contig110end:31684-31703 MsG0080047814.01.T02:intron 50.0%
TAATCCCAGACAGTGTCACG+TGG - contig110end:30609-30628 None:intergenic 50.0%
TATTGCTGACAGCGGTTTGC+AGG - contig110end:30140-30159 None:intergenic 50.0%
TCACTACCGGAGTTGTTCCT+GGG + contig110end:32749-32768 MsG0080047814.01.T02:CDS 50.0%
TGAAGTTCCAGCAGATCCCA+AGG - contig110end:31134-31153 None:intergenic 50.0%
TGACATGCAGCTAGAGGCTA+TGG + contig110end:33958-33977 MsG0080047814.01.T02:intron 50.0%
TGATGTTGGGACCCACTTGT+TGG + contig110end:33506-33525 MsG0080047814.01.T02:intron 50.0%
TGGCTGCCAATTGCTCATCA+CGG - contig110end:34027-34046 None:intergenic 50.0%
TGTGGGTCCTACCAACAAGT+GGG - contig110end:33520-33539 None:intergenic 50.0%
TTCTGCCCAACCCTAAGTTG+GGG + contig110end:31795-31814 MsG0080047814.01.T02:intron 50.0%
TTGAGGAACAATCCCCAGGT+AGG + contig110end:32953-32972 MsG0080047814.01.T02:intron 50.0%
TTTCCGAGCTCCTGAAGTAC+AGG - contig110end:33184-33203 None:intergenic 50.0%
! AGCACGAAGAGCACGATTGA+CGG - contig110end:32525-32544 None:intergenic 50.0%
! CACAAGTCTGGCCTTTCTCA+TGG - contig110end:31876-31895 None:intergenic 50.0%
! CTGGTTCGCTTGACTTCTTG+AGG + contig110end:32936-32955 MsG0080047814.01.T02:CDS 50.0%
! GTCAGCAATACCGGTTGTTG+CGG + contig110end:30150-30169 MsG0080047814.01.T02:intron 50.0%
! TCTCCTTTTTGCAAGGAGGG+TGG + contig110end:34125-34144 MsG0080047814.01.T02:three_prime_UTR 50.0%
! TTTGTAGGTGCCACAACTGC+AGG - contig110end:31418-31437 None:intergenic 50.0%
!! ACAATTTCTGGTGCTGGAGC+TGG + contig110end:32911-32930 MsG0080047814.01.T02:CDS 50.0%
!! ATCCTAATAGCGGACGCGAT+AGG - contig110end:30185-30204 None:intergenic 50.0%
!! CAGGAGACAATTTCTGGTGC+TGG + contig110end:32905-32924 MsG0080047814.01.T02:intron 50.0%
!! CGTTCAAAGCTCTGAAGGGA+AGG + contig110end:31768-31787 MsG0080047814.01.T02:intron 50.0%
!! GGTGTTGGCACAGTTATAGG+TGG - contig110end:31265-31284 None:intergenic 50.0%
!! TCCTAATAGCGGACGCGATA+GGG - contig110end:30184-30203 None:intergenic 50.0%
!!! GGAGTTTGGTGCAACGCTTT+TGG + contig110end:30114-30133 MsG0080047814.01.T02:intron 50.0%
ACACTACGTCACCCTCTCTC+TGG + contig110end:31007-31026 MsG0080047814.01.T02:intron 55.0%
ACTACGTCACCCTCTCTCTG+GGG + contig110end:31009-31028 MsG0080047814.01.T02:intron 55.0%
AGCACCACGTGACACTGTCT+GGG + contig110end:30602-30621 MsG0080047814.01.T02:intron 55.0%
CAACGCATCTCCTGCAGTTG+TGG + contig110end:31405-31424 MsG0080047814.01.T02:five_prime_UTR 55.0%
CACCCTTCAGTACCGTCCAT+GGG - contig110end:33274-33293 None:intergenic 55.0%
CACTACCGGAGTTGTTCCTG+GGG + contig110end:32750-32769 MsG0080047814.01.T02:CDS 55.0%
CACTACGTCACCCTCTCTCT+GGG + contig110end:31008-31027 MsG0080047814.01.T02:intron 55.0%
CAGCCTGTACTTCAGGAGCT+CGG + contig110end:33178-33197 MsG0080047814.01.T02:intron 55.0%
CCTAAATTGGCCCCAGAGAG+AGG - contig110end:31022-31041 None:intergenic 55.0%
CGTTGCACCAAACTCCACCA+CGG - contig110end:30110-30129 None:intergenic 55.0%
GAAACAGGTGGGGTCACTAC+CGG + contig110end:32736-32755 MsG0080047814.01.T02:CDS 55.0%
GACACCGATCCGGAATCGAA+TGG - contig110end:29396-29415 None:intergenic 55.0%
GCAGAATAGTGTAGCCGTGG+TGG + contig110end:30093-30112 MsG0080047814.01.T02:intron 55.0%
GTCACTACCGGAGTTGTTCC+TGG + contig110end:32748-32767 MsG0080047814.01.T02:CDS 55.0%
GTGACCCCACCTGTTTCAGT+TGG - contig110end:32733-32752 None:intergenic 55.0%
TAATGTGACGCCAGCTGAGC+AGG + contig110end:33800-33819 MsG0080047814.01.T02:CDS 55.0%
TCACCCTTCAGTACCGTCCA+TGG - contig110end:33275-33294 None:intergenic 55.0%
TGAGCAGGAGGCAATCGGAA+GGG + contig110end:33815-33834 MsG0080047814.01.T02:CDS 55.0%
! AAGGGAAGAGAAGAGCGTGG+TGG + contig110end:29317-29336 MsG0080047814.01.T02:five_prime_UTR 55.0%
! AGGGAAGAGAAGAGCGTGGT+GGG + contig110end:29318-29337 MsG0080047814.01.T02:five_prime_UTR 55.0%
! AGTGTAGCCGTGGTGGAGTT+TGG + contig110end:30100-30119 MsG0080047814.01.T02:intron 55.0%
! GTTGGGACCCACTTGTTGGT+AGG + contig110end:33510-33529 MsG0080047814.01.T02:intron 55.0%
!! CCTCTCTCTGGGGCCAATTT+AGG + contig110end:31019-31038 MsG0080047814.01.T02:intron 55.0%
!! GAGCGTGGTGGGTGAAAAAG+AGG + contig110end:29329-29348 MsG0080047814.01.T02:five_prime_UTR 55.0%
AGGGACCCCAGGAACAACTC+CGG - contig110end:32758-32777 None:intergenic 60.0%
CAGCACCACGTGACACTGTC+TGG + contig110end:30601-30620 MsG0080047814.01.T02:intron 60.0%
CCAGCTGAGCAGGAGGCAAT+CGG + contig110end:33810-33829 MsG0080047814.01.T02:CDS 60.0%
CTGAGCAGGAGGCAATCGGA+AGG + contig110end:33814-33833 MsG0080047814.01.T02:CDS 60.0%
GCCCTATCGCGTCCGCTATT+AGG + contig110end:30180-30199 MsG0080047814.01.T02:intron 60.0%
GGCATTAGGGCCGCAACAAC+CGG - contig110end:30163-30182 None:intergenic 60.0%
GGGAAGGGAAGAGAAGAGCG+TGG + contig110end:29314-29333 MsG0080047814.01.T02:five_prime_UTR 60.0%
! AGCGGACGCGATAGGGCATT+AGG - contig110end:30177-30196 None:intergenic 60.0%
! GAGAAGCGGGCTCCAAATGC+AGG - contig110end:30829-30848 None:intergenic 60.0%
! GCGGACGCGATAGGGCATTA+GGG - contig110end:30176-30195 None:intergenic 60.0%
CCGATTGCCTCCTGCTCAGC+TGG - contig110end:33813-33832 None:intergenic 65.0%
GGAGACGAGTTAGGGACCCC+AGG - contig110end:32769-32788 None:intergenic 65.0%
TGTGACGCCAGCTGAGCAGG+AGG + contig110end:33803-33822 MsG0080047814.01.T02:CDS 65.0%
! GGACATGGGTGGTGGCAGCT+GGG + contig110end:32490-32509 MsG0080047814.01.T02:CDS 65.0%
! TCTGGTGCTGGAGCTGGAGC+TGG + contig110end:32917-32936 MsG0080047814.01.T02:CDS 65.0%
! TGGACATGGGTGGTGGCAGC+TGG + contig110end:32489-32508 MsG0080047814.01.T02:CDS 65.0%
! GGGTGGTGGCAGCTGGGACA+GGG + contig110end:32496-32515 MsG0080047814.01.T02:CDS 70.0%
! TGGGTGGTGGCAGCTGGGAC+AGG + contig110end:32495-32514 MsG0080047814.01.T02:CDS 70.0%
Chromosome Type Strat End Strand Name
contig110end gene 29271 34274 29271 ID=MsG0080047814.01;Name=MsG0080047814.01
contig110end mRNA 29271 34274 29271 ID=MsG0080047814.01.T01;Parent=MsG0080047814.01;Name=MsG0080047814.01.T01;_AED=0.50;_eAED=0.50;_QI=149|0.9|1|1|0.6|0.63|11|190|350
contig110end exon 31250 31311 31250 ID=MsG0080047814.01.T01:exon:18728;Parent=MsG0080047814.01.T01
contig110end exon 31124 31162 31124 ID=MsG0080047814.01.T01:exon:18727;Parent=MsG0080047814.01.T01
contig110end five_prime_UTR 29271 29419 29271 ID=MsG0080047814.01.T01:five_prime_utr;Parent=MsG0080047814.01.T01
contig110end CDS 29420 29485 29420 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 29586 29747 29586 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 31124 31162 31124 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 31250 31311 31250 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 31393 31437 31393 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 32409 32586 32409 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 32676 32807 32676 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 32908 32970 32908 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 33181 33290 33181 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 33758 33836 33758 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end CDS 33968 34084 33968 ID=MsG0080047814.01.T01:cds;Parent=MsG0080047814.01.T01
contig110end three_prime_UTR 34085 34274 34085 ID=MsG0080047814.01.T01:three_prime_utr;Parent=MsG0080047814.01.T01
contig110end mRNA 29271 34274 29271 ID=MsG0080047814.01.T02;Parent=MsG0080047814.01;Name=MsG0080047814.01.T02;_AED=0.50;_eAED=0.50;_QI=689|0.88|1|1|0.66|0.7|10|190|199
contig110end exon 31124 31311 31124 ID=MsG0080047814.01.T02:exon:18736;Parent=MsG0080047814.01.T02
contig110end five_prime_UTR 29271 29485 29271 ID=MsG0080047814.01.T02:five_prime_utr;Parent=MsG0080047814.01.T02
contig110end five_prime_UTR 29586 29747 29586 ID=MsG0080047814.01.T02:five_prime_utr;Parent=MsG0080047814.01.T02
contig110end five_prime_UTR 31124 31311 31124 ID=MsG0080047814.01.T02:five_prime_utr;Parent=MsG0080047814.01.T02
contig110end five_prime_UTR 31393 31437 31393 ID=MsG0080047814.01.T02:five_prime_utr;Parent=MsG0080047814.01.T02
contig110end five_prime_UTR 32409 32487 32409 ID=MsG0080047814.01.T02:five_prime_utr;Parent=MsG0080047814.01.T02
contig110end CDS 32488 32586 32488 ID=MsG0080047814.01.T02:cds;Parent=MsG0080047814.01.T02
contig110end CDS 32676 32807 32676 ID=MsG0080047814.01.T02:cds;Parent=MsG0080047814.01.T02
contig110end CDS 32908 32970 32908 ID=MsG0080047814.01.T02:cds;Parent=MsG0080047814.01.T02
contig110end CDS 33181 33290 33181 ID=MsG0080047814.01.T02:cds;Parent=MsG0080047814.01.T02
contig110end CDS 33758 33836 33758 ID=MsG0080047814.01.T02:cds;Parent=MsG0080047814.01.T02
contig110end CDS 33968 34084 33968 ID=MsG0080047814.01.T02:cds;Parent=MsG0080047814.01.T02
contig110end three_prime_UTR 34085 34274 34085 ID=MsG0080047814.01.T02:three_prime_utr;Parent=MsG0080047814.01.T02
contig110end mRNA 29271 29813 29271 ID=MsG0080047814.01.T03;Parent=MsG0080047814.01;Name=MsG0080047814.01.T03;_AED=0.50;_eAED=0.56;_QI=149|1|0.5|1|1|1|2|0|97
contig110end exon 29586 29813 29586 ID=MsG0080047814.01.T03:exon:18737;Parent=MsG0080047814.01.T03
contig110end five_prime_UTR 29271 29419 29271 ID=MsG0080047814.01.T03:five_prime_utr;Parent=MsG0080047814.01.T03
contig110end CDS 29420 29485 29420 ID=MsG0080047814.01.T03:cds;Parent=MsG0080047814.01.T03
contig110end CDS 29586 29813 29586 ID=MsG0080047814.01.T03:cds;Parent=MsG0080047814.01.T03
Gene Sequence

>MsG0080047814.01.T02

ATGGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCTGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTCACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGTTCGCTTGACTTCTTGAGGAACAATCCCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCAGGTCTCTTGAGACTTATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTTAATGTGACGCCAGCTGAGCAGGAGGCAATCGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA

>MsG0080047814.01.T01

ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCGATAATGGCTGTAAAAAAGAATATTGAAGACATTCAAGGAAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGAAAAGTTCTCAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAGCCTTGGGATCTGCTGGAACTTCATCTACTCAGACCGTTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACACCTGTAGTACAGACTCAATCTGCAAACAACAACGCATCTCCTGCAGTTGTGGCACCTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGAAGTAATCTTGAGCAGACTATTCAACAACTTATGGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCTGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTCACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGTTCGCTTGACTTCTTGAGGAACAATCCCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCAGGTCTCTTGAGACTTATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTTAATGTGACGCCAGCTGAGCAGGAGGCAATCGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA

>MsG0080047814.01.T03

ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCGATAATGGCTGTAAAAAAGAATATTGAAGACATTCAAGGAAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGAAAAGTTCTCAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGGTATTATTATTATATTATTATATGGATCTCTATTTCAATCTAAATTACTTTCAATTTAGGGGCTGA

Protein sequence

>MsG0080047814.01.T02

MDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEIAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGSLDFLRNNPQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*

>MsG0080047814.01.T01

MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKALGSAGTSSTQTVSNPPITVPTPDSTPVVQTQSANNNASPAVVAPTNVTTDTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEIAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGSLDFLRNNPQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*

>MsG0080047814.01.T03

MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKVLLLYYYMDLYFNLNYFQFRG*