AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048463.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048463.01.T01 MTR_2g105270 99.515 206 1 0 3 208 243 448 1.27e-149 423
MsG0080048463.01.T01 MTR_2g105270 99.231 130 1 0 3 132 243 372 2.39e-86 261
MsG0080048463.01.T01 MTR_2g105270 98.261 115 2 0 3 117 243 357 5.08e-75 230
MsG0080048463.01.T01 MTR_5g045590 51.174 213 88 3 3 207 200 404 2.19e-64 204
MsG0080048463.01.T01 MTR_5g005240 42.060 233 105 7 3 206 212 443 1.79e-43 151
MsG0080048463.01.T01 MTR_1g040495 41.919 198 81 5 3 197 193 359 6.02e-38 135
MsG0080048463.01.T01 MTR_8g088670 40.291 206 98 7 3 206 238 420 1.26e-37 135
MsG0080048463.01.T01 MTR_1g093370 46.753 154 78 2 57 206 13 166 4.13e-37 127
MsG0080048463.01.T01 MTR_1g076220 51.538 130 62 1 78 206 99 228 2.45e-36 127
MsG0080048463.01.T01 MTR_7g096170 50.360 139 65 4 62 198 146 282 3.60e-36 128
MsG0080048463.01.T01 MTR_1g076210 50.370 135 62 2 75 206 256 388 4.29e-36 130
MsG0080048463.01.T01 MTR_1g093280 50.370 135 62 2 75 206 256 388 4.29e-36 130
MsG0080048463.01.T01 MTR_7g096170 50.360 139 65 4 62 198 243 379 1.89e-35 129
MsG0080048463.01.T01 MTR_1g106065 37.557 221 116 8 3 205 202 418 3.72e-35 128
MsG0080048463.01.T01 MTR_7g096170 52.033 123 56 3 62 183 243 363 7.84e-32 119
MsG0080048463.01.T01 MTR_8g094880 35.266 207 106 5 3 207 243 423 2.48e-31 118
MsG0080048463.01.T01 MTR_8g094905 35.266 207 106 5 3 207 243 423 2.48e-31 118
MsG0080048463.01.T01 MTR_8g098970 71.154 52 15 0 1 52 1 52 6.83e-19 77.4
MsG0080048463.01.T01 MTR_1g040455 45.349 86 42 2 111 193 1 84 1.42e-17 75.1
MsG0080048463.01.T01 MTR_7g096170 63.636 55 17 1 80 131 256 310 4.74e-15 72.8
MsG0080048463.01.T01 MTR_3g020210 80.556 36 7 0 25 60 51 86 2.30e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048463.01.T01 AT1G16010 87.379 206 23 2 3 208 240 442 2.75e-124 358
MsG0080048463.01.T01 AT1G16010 87.379 206 23 2 3 208 240 442 2.75e-124 358
MsG0080048463.01.T01 AT1G16010 87.379 206 23 2 3 208 240 442 2.75e-124 358
MsG0080048463.01.T01 AT1G80900 82.039 206 35 1 3 208 240 443 3.25e-117 340
MsG0080048463.01.T01 AT1G80900 82.039 206 35 1 3 208 240 443 3.25e-117 340
MsG0080048463.01.T01 AT2G03620 54.762 210 89 5 3 208 214 421 6.37e-58 188
MsG0080048463.01.T01 AT2G03620 54.762 210 89 5 3 208 214 421 6.37e-58 188
MsG0080048463.01.T01 AT3G19640 41.126 231 104 6 3 206 258 483 2.01e-47 162
MsG0080048463.01.T01 AT5G09690 45.411 207 87 5 3 206 201 384 4.08e-46 157
MsG0080048463.01.T01 AT5G09690 45.411 207 87 5 3 206 212 395 5.42e-46 156
MsG0080048463.01.T01 AT5G09690 48.370 184 69 5 3 183 212 372 5.72e-42 145
MsG0080048463.01.T01 AT3G58970 37.981 208 104 6 3 206 248 434 6.94e-40 141
MsG0080048463.01.T01 AT5G64560 48.872 133 67 1 75 206 260 392 6.93e-37 132
MsG0080048463.01.T01 AT5G64560 60.215 93 37 0 75 167 260 352 4.97e-33 122
MsG0080048463.01.T01 AT5G09690 50.704 142 49 3 3 144 201 321 9.94e-31 115
MsG0080048463.01.T01 AT5G09690 51.408 142 42 4 3 141 201 318 1.80e-30 114
MsG0080048463.01.T01 AT5G09690 51.079 139 47 3 3 141 201 318 1.81e-30 114
MsG0080048463.01.T01 AT5G09690 51.079 139 47 3 3 141 212 329 1.88e-30 114
MsG0080048463.01.T01 AT5G09690 51.408 142 42 4 3 141 212 329 1.94e-30 114
MsG0080048463.01.T01 AT5G09690 51.408 142 42 4 3 141 212 329 1.94e-30 114
MsG0080048463.01.T01 AT5G09690 36.232 207 91 5 3 206 201 369 1.73e-25 102
MsG0080048463.01.T01 AT4G28580 32.057 209 104 6 3 206 232 407 4.84e-24 98.6

Find 63 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTAAAATATAAATTTAA+AGG 0.145793 contig326end:-29506 MsG0080048463.01.T01:three_prime_UTR
GGAGTGGTGGCAGGAATATT+TGG 0.196891 contig326end:-30251 MsG0080048463.01.T01:CDS
ATGTTGGTGTAGCTTCTTAT+AGG 0.278819 contig326end:+30099 None:intergenic
AGTGAGACTAAATTAATAAT+TGG 0.292742 contig326end:-29836 MsG0080048463.01.T01:three_prime_UTR
ACATTTGTGGTTGCAATCTT+TGG 0.293975 contig326end:-30272 MsG0080048463.01.T01:CDS
CGCAAACTCCTGTTATTATA+AGG 0.306482 contig326end:+30177 None:intergenic
CAGTGGGTCCTTATAATAAC+AGG 0.314280 contig326end:-30185 MsG0080048463.01.T01:CDS
GAGTGGTGGCAGGAATATTT+GGG 0.321680 contig326end:-30250 MsG0080048463.01.T01:CDS
GTCTTAATCATCTGGTTCTC+AGG 0.323006 contig326end:-30022 MsG0080048463.01.T01:three_prime_UTR
TGTTGGTGTAGCTTCTTATA+GGG 0.330077 contig326end:+30100 None:intergenic
GAACATGATTAAACAATTGC+AGG 0.381962 contig326end:-30076 MsG0080048463.01.T01:three_prime_UTR
GCAGATGGGACATCAAATAA+TGG 0.395904 contig326end:+30212 None:intergenic
GAAAAGGGACCCTGGTAATT+CGG 0.411419 contig326end:-29999 MsG0080048463.01.T01:three_prime_UTR
ACTCACAACTGCAACATTTG+TGG 0.415751 contig326end:-30285 MsG0080048463.01.T01:CDS
TCATCTGGTTCTCAGGGAAA+AGG 0.419081 contig326end:-30015 MsG0080048463.01.T01:three_prime_UTR
TATGGATGATGATGGTGATA+TGG 0.419241 contig326end:-30987 MsG0080048463.01.T01:CDS
AGATGAAATAGAGCAGCTTA+TGG 0.421927 contig326end:-31005 MsG0080048463.01.T01:CDS
TACTTGAAAATAATCAATCA+TGG 0.439863 contig326end:+29665 None:intergenic
AGCCTCCGAGAGTGAGAGTC+AGG 0.448161 contig326end:+30836 None:intergenic
AGATTTCATCAACATTCAAC+TGG 0.455223 contig326end:-30556 MsG0080048463.01.T01:intron
ATAAAATTCAAATGCAAAGA+TGG 0.459499 contig326end:-29946 MsG0080048463.01.T01:three_prime_UTR
GAGTCAGGTGGTGATGAAAC+AGG 0.460932 contig326end:+30851 None:intergenic
AGACTAAATTAATAATTGGT+TGG 0.463489 contig326end:-29832 MsG0080048463.01.T01:three_prime_UTR
CATCTGGTTCTCAGGGAAAA+GGG 0.465282 contig326end:-30014 MsG0080048463.01.T01:three_prime_UTR
GCAATCTTTGGAGTGGTGGC+AGG 0.465654 contig326end:-30260 MsG0080048463.01.T01:CDS
TTGTGAGTAAAAGCTCAAAC+TGG 0.470435 contig326end:+30300 None:intergenic
GCTAATATTGTGGATGTGTC+AGG 0.487693 contig326end:-31032 None:intergenic
ACATCATACTCCGAATTACC+AGG 0.489346 contig326end:+29989 None:intergenic
TATGGAGATCAGTCTATGGT+TGG 0.502971 contig326end:-30917 MsG0080048463.01.T01:CDS
GGTGATGAAACAGGAGAGAC+TGG 0.503084 contig326end:+30860 None:intergenic
GAGATGGATGCACCATCAAC+CGG 0.513341 contig326end:+30887 None:intergenic
TCTTAATCATCTGGTTCTCA+GGG 0.513823 contig326end:-30021 MsG0080048463.01.T01:three_prime_UTR
AGAAGAGCTTGAGCATTGCT+AGG 0.517888 contig326end:-30811 MsG0080048463.01.T01:CDS
CAATAGAACTTCACATGGCA+TGG 0.518855 contig326end:-29704 MsG0080048463.01.T01:three_prime_UTR
ATGTCCCATCTGCATTTCAG+TGG 0.522155 contig326end:-30202 MsG0080048463.01.T01:CDS
AATTGCAGGGTGGCATATGA+TGG 0.531462 contig326end:-30062 MsG0080048463.01.T01:three_prime_UTR
GTTGGATATAGACCGGTTGA+TGG 0.535505 contig326end:-30899 MsG0080048463.01.T01:CDS
GTCTATGGTTGGATATAGAC+CGG 0.535718 contig326end:-30906 MsG0080048463.01.T01:CDS
TGTGGTTCTTCAAGTACAGA+AGG 0.542985 contig326end:-30130 MsG0080048463.01.T01:CDS
TGTCCCATCTGCATTTCAGT+GGG 0.554672 contig326end:-30201 MsG0080048463.01.T01:CDS
CTTATAATAACAGGAGTTTG+CGG 0.555411 contig326end:-30176 MsG0080048463.01.T01:CDS
CACCACCTGACTCTCACTCT+CGG 0.557224 contig326end:-30841 MsG0080048463.01.T01:CDS
AGGAGAGACTGGAAGAGAGA+TGG 0.565175 contig326end:+30871 None:intergenic
GGAGTCGACACGAGAGCATG+AGG 0.579329 contig326end:-30790 MsG0080048463.01.T01:CDS
GGTTGCAATCTTTGGAGTGG+TGG 0.579624 contig326end:-30264 MsG0080048463.01.T01:CDS
TTGTTTAATCATGTTCATGT+TGG 0.580705 contig326end:+30083 None:intergenic
GTTGGTGTAGCTTCTTATAG+GGG 0.584463 contig326end:+30101 None:intergenic
AGGACCCACTGAAATGCAGA+TGG 0.588506 contig326end:+30197 None:intergenic
TACCGAGAAGAAAAGACGAA+TGG 0.590299 contig326end:-30951 MsG0080048463.01.T01:CDS
AACATGATTAAACAATTGCA+GGG 0.598115 contig326end:-30075 MsG0080048463.01.T01:three_prime_UTR
TGTGGTTGCAATCTTTGGAG+TGG 0.599940 contig326end:-30267 MsG0080048463.01.T01:CDS
ATTAAAACATACATTTCATG+CGG 0.603700 contig326end:+29749 None:intergenic
TTCTCAGGGAAAAGGGACCC+TGG 0.618214 contig326end:-30007 MsG0080048463.01.T01:three_prime_UTR
GAGCAGCTTATGGATGATGA+TGG 0.627314 contig326end:-30995 MsG0080048463.01.T01:CDS
CACTCTAAACAAGTTGACAT+CGG 0.643907 contig326end:-30693 MsG0080048463.01.T01:intron
CTCCGAGAGTGAGAGTCAGG+TGG 0.667939 contig326end:+30839 None:intergenic
TATTATTACAGGATAATGTG+CGG 0.676578 contig326end:-30334 MsG0080048463.01.T01:intron
GGACCCACTGAAATGCAGAT+GGG 0.678111 contig326end:+30198 None:intergenic
AGTTTCAATAGAACTTCACA+TGG 0.681047 contig326end:-29709 MsG0080048463.01.T01:three_prime_UTR
CATCATACTCCGAATTACCA+GGG 0.694799 contig326end:+29990 None:intergenic
CACCTGACTCTCACTCTCGG+AGG 0.701741 contig326end:-30838 MsG0080048463.01.T01:CDS
TGCTGAATCAGAATACCATG+AGG 0.735224 contig326end:+29869 None:intergenic
ATGATTAAACAATTGCAGGG+TGG 0.751888 contig326end:-30072 MsG0080048463.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATATATTATTTTTT+TGG - contig326end:30862-30881 MsG0080048463.01.T01:CDS 0.0%
!!! TATTTAAAATATAAATTTAA+AGG - contig326end:30999-31018 MsG0080048463.01.T01:CDS 0.0%
!! ATCTTGAAAGAAATAAAAAT+AGG + contig326end:30718-30737 None:intergenic 15.0%
!!! AATATATTATTTTTTTGGAG+AGG - contig326end:30867-30886 MsG0080048463.01.T01:CDS 15.0%
!!! ATGAAATGTATGTTTTAATA+AGG - contig326end:30760-30779 MsG0080048463.01.T01:CDS 15.0%
!! ACTAATAACCAAAATACAAT+AGG + contig326end:30022-30041 None:intergenic 20.0%
!! AGACTAAATTAATAATTGGT+TGG - contig326end:30673-30692 MsG0080048463.01.T01:intron 20.0%
!! AGTGAGACTAAATTAATAAT+TGG - contig326end:30669-30688 MsG0080048463.01.T01:intron 20.0%
!! ATAAAATTCAAATGCAAAGA+TGG - contig326end:30559-30578 MsG0080048463.01.T01:CDS 20.0%
!! ATTAAAACATACATTTCATG+CGG + contig326end:30759-30778 None:intergenic 20.0%
!! TACAATGTATGTATTATTAC+AGG - contig326end:30160-30179 MsG0080048463.01.T01:CDS 20.0%
!! TACTTGAAAATAATCAATCA+TGG + contig326end:30843-30862 None:intergenic 20.0%
!!! ATTCAATTTTGCATCAATTT+TGG - contig326end:30607-30626 MsG0080048463.01.T01:intron 20.0%
!!! TTTTAACTGAAACAAGAAAA+TGG + contig326end:29909-29928 None:intergenic 20.0%
!!! TTTTTTTTGTCTTAATCATC+TGG - contig326end:30475-30494 MsG0080048463.01.T01:intron 20.0%
! AAAATACAATAGGATAACCT+TGG + contig326end:30012-30031 None:intergenic 25.0%
! AACATGATTAAACAATTGCA+GGG - contig326end:30430-30449 MsG0080048463.01.T01:intron 25.0%
! AGTTAATATAGATAACAGTG+TGG + contig326end:29845-29864 None:intergenic 25.0%
! GTTAATATAGATAACAGTGT+GGG + contig326end:29844-29863 None:intergenic 25.0%
! TATTATTACAGGATAATGTG+CGG - contig326end:30171-30190 MsG0080048463.01.T01:CDS 25.0%
! TTGTTTAATCATGTTCATGT+TGG + contig326end:30425-30444 None:intergenic 25.0%
!! AAGGTTATCCTATTGTATTT+TGG - contig326end:30011-30030 MsG0080048463.01.T01:three_prime_UTR 25.0%
AAACGGTGATAGATAAATTG+CGG + contig326end:29886-29905 None:intergenic 30.0%
AGATTTCATCAACATTCAAC+TGG - contig326end:29949-29968 MsG0080048463.01.T01:three_prime_UTR 30.0%
AGTTTCAATAGAACTTCACA+TGG - contig326end:30796-30815 MsG0080048463.01.T01:CDS 30.0%
CTGAAACAAGAAAATGGAAA+CGG + contig326end:29903-29922 None:intergenic 30.0%
CTTATAATAACAGGAGTTTG+CGG - contig326end:30329-30348 MsG0080048463.01.T01:intron 30.0%
GAACATGATTAAACAATTGC+AGG - contig326end:30429-30448 MsG0080048463.01.T01:intron 30.0%
! ATTTTATGGAGATCAGTCTA+TGG - contig326end:29584-29603 MsG0080048463.01.T01:three_prime_UTR 30.0%
! GTATATTTTCTGCATTTGTG+TGG - contig326end:30357-30376 MsG0080048463.01.T01:intron 30.0%
!!! CAATTTTGGAATATTCCTCA+TGG - contig326end:30621-30640 MsG0080048463.01.T01:intron 30.0%
!!! CGAATGGAATTGTCATTTTA+TGG - contig326end:29570-29589 MsG0080048463.01.T01:three_prime_UTR 30.0%
ACATTTGTGGTTGCAATCTT+TGG - contig326end:30233-30252 MsG0080048463.01.T01:CDS 35.0%
AGATGAAATAGAGCAGCTTA+TGG - contig326end:29500-29519 MsG0080048463.01.T01:three_prime_UTR 35.0%
ATGATTAAACAATTGCAGGG+TGG - contig326end:30433-30452 MsG0080048463.01.T01:intron 35.0%
ATGTTGGTGTAGCTTCTTAT+AGG + contig326end:30409-30428 None:intergenic 35.0%
CATACAGACAACGCATAATT+GGG - contig326end:30084-30103 MsG0080048463.01.T01:three_prime_UTR 35.0%
CGCAAACTCCTGTTATTATA+AGG + contig326end:30331-30350 None:intergenic 35.0%
CTTTCTCATATTAGTCACCA+AGG - contig326end:29992-30011 MsG0080048463.01.T01:three_prime_UTR 35.0%
GGTGACTAATATGAGAAAGA+AGG + contig326end:29991-30010 None:intergenic 35.0%
TAGATAAATTGCGGTGAAGT+TGG + contig326end:29877-29896 None:intergenic 35.0%
TCATACAGACAACGCATAAT+TGG - contig326end:30083-30102 MsG0080048463.01.T01:three_prime_UTR 35.0%
TGTTGGTGTAGCTTCTTATA+GGG + contig326end:30408-30427 None:intergenic 35.0%
TTGTGAGTAAAAGCTCAAAC+TGG + contig326end:30208-30227 None:intergenic 35.0%
! CACTCTAAACAAGTTGACAT+CGG - contig326end:29812-29831 MsG0080048463.01.T01:three_prime_UTR 35.0%
! TTCCATTCGTCTTTTCTTCT+CGG + contig326end:29559-29578 None:intergenic 35.0%
!! GTTTTAATAAGGCTGAGACA+AGG - contig326end:30771-30790 MsG0080048463.01.T01:CDS 35.0%
!! TATGGATGATGATGGTGATA+TGG - contig326end:29518-29537 MsG0080048463.01.T01:three_prime_UTR 35.0%
!! TCTTAATCATCTGGTTCTCA+GGG - contig326end:30484-30503 MsG0080048463.01.T01:intron 35.0%
ACATCATACTCCGAATTACC+AGG + contig326end:30519-30538 None:intergenic 40.0%
ACTCACAACTGCAACATTTG+TGG - contig326end:30220-30239 MsG0080048463.01.T01:CDS 40.0%
CAATAGAACTTCACATGGCA+TGG - contig326end:30801-30820 MsG0080048463.01.T01:CDS 40.0%
CAGTGGGTCCTTATAATAAC+AGG - contig326end:30320-30339 MsG0080048463.01.T01:CDS 40.0%
CATCATACTCCGAATTACCA+GGG + contig326end:30518-30537 None:intergenic 40.0%
GCAGATGGGACATCAAATAA+TGG + contig326end:30296-30315 None:intergenic 40.0%
GTCTATGGTTGGATATAGAC+CGG - contig326end:29599-29618 MsG0080048463.01.T01:three_prime_UTR 40.0%
GTTGGTGTAGCTTCTTATAG+GGG + contig326end:30407-30426 None:intergenic 40.0%
GTTGTCTGTATGAGTATGTG+TGG + contig326end:30076-30095 None:intergenic 40.0%
TACCGAGAAGAAAAGACGAA+TGG - contig326end:29554-29573 MsG0080048463.01.T01:three_prime_UTR 40.0%
TATGGAGATCAGTCTATGGT+TGG - contig326end:29588-29607 MsG0080048463.01.T01:three_prime_UTR 40.0%
TGCTGAATCAGAATACCATG+AGG + contig326end:30639-30658 None:intergenic 40.0%
TGTGGTTCTTCAAGTACAGA+AGG - contig326end:30375-30394 MsG0080048463.01.T01:intron 40.0%
! TTCGTCTTTTCTTCTCGGTA+AGG + contig326end:29554-29573 None:intergenic 40.0%
!! GTCTTAATCATCTGGTTCTC+AGG - contig326end:30483-30502 MsG0080048463.01.T01:intron 40.0%
AATTGCAGGGTGGCATATGA+TGG - contig326end:30443-30462 MsG0080048463.01.T01:intron 45.0%
ACAGACAACGCATAATTGGG+AGG - contig326end:30087-30106 MsG0080048463.01.T01:three_prime_UTR 45.0%
AGACAACGCATAATTGGGAG+GGG - contig326end:30089-30108 MsG0080048463.01.T01:three_prime_UTR 45.0%
ATGTCCCATCTGCATTTCAG+TGG - contig326end:30303-30322 MsG0080048463.01.T01:CDS 45.0%
CAGACAACGCATAATTGGGA+GGG - contig326end:30088-30107 MsG0080048463.01.T01:three_prime_UTR 45.0%
GAAAAGGGACCCTGGTAATT+CGG - contig326end:30506-30525 MsG0080048463.01.T01:intron 45.0%
GAGCAGCTTATGGATGATGA+TGG - contig326end:29510-29529 MsG0080048463.01.T01:three_prime_UTR 45.0%
GAGTGGTGGCAGGAATATTT+GGG - contig326end:30255-30274 MsG0080048463.01.T01:CDS 45.0%
GTTGGATATAGACCGGTTGA+TGG - contig326end:29606-29625 MsG0080048463.01.T01:three_prime_UTR 45.0%
TGTCCCATCTGCATTTCAGT+GGG - contig326end:30304-30323 MsG0080048463.01.T01:CDS 45.0%
! AGAAGAGCTTGAGCATTGCT+AGG - contig326end:29694-29713 MsG0080048463.01.T01:three_prime_UTR 45.0%
! TGTGGTTGCAATCTTTGGAG+TGG - contig326end:30238-30257 MsG0080048463.01.T01:CDS 45.0%
!! CATCTGGTTCTCAGGGAAAA+GGG - contig326end:30491-30510 MsG0080048463.01.T01:intron 45.0%
!! TCATCTGGTTCTCAGGGAAA+AGG - contig326end:30490-30509 MsG0080048463.01.T01:intron 45.0%
AACGCATAATTGGGAGGGGA+GGG - contig326end:30093-30112 MsG0080048463.01.T01:three_prime_UTR 50.0%
AGGACCCACTGAAATGCAGA+TGG + contig326end:30311-30330 None:intergenic 50.0%
AGGAGAGACTGGAAGAGAGA+TGG + contig326end:29637-29656 None:intergenic 50.0%
GAGATGGATGCACCATCAAC+CGG + contig326end:29621-29640 None:intergenic 50.0%
GGACCCACTGAAATGCAGAT+GGG + contig326end:30310-30329 None:intergenic 50.0%
GGAGTGGTGGCAGGAATATT+TGG - contig326end:30254-30273 MsG0080048463.01.T01:CDS 50.0%
GGTGATGAAACAGGAGAGAC+TGG + contig326end:29648-29667 None:intergenic 50.0%
! GAGTCAGGTGGTGATGAAAC+AGG + contig326end:29657-29676 None:intergenic 50.0%
!! GGTTGCAATCTTTGGAGTGG+TGG - contig326end:30241-30260 MsG0080048463.01.T01:CDS 50.0%
CAACGCATAATTGGGAGGGG+AGG - contig326end:30092-30111 MsG0080048463.01.T01:three_prime_UTR 55.0%
CACCACCTGACTCTCACTCT+CGG - contig326end:29664-29683 MsG0080048463.01.T01:three_prime_UTR 55.0%
TTCTCAGGGAAAAGGGACCC+TGG - contig326end:30498-30517 MsG0080048463.01.T01:intron 55.0%
!! GCAATCTTTGGAGTGGTGGC+AGG - contig326end:30245-30264 MsG0080048463.01.T01:CDS 55.0%
AGCCTCCGAGAGTGAGAGTC+AGG + contig326end:29672-29691 None:intergenic 60.0%
CACCTGACTCTCACTCTCGG+AGG - contig326end:29667-29686 MsG0080048463.01.T01:three_prime_UTR 60.0%
CTCCGAGAGTGAGAGTCAGG+TGG + contig326end:29669-29688 None:intergenic 60.0%
! GGAGTCGACACGAGAGCATG+AGG - contig326end:29715-29734 MsG0080048463.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
contig326end gene 29486 31041 29486 ID=MsG0080048463.01;Name=MsG0080048463.01
contig326end mRNA 29486 31041 29486 ID=MsG0080048463.01.T01;Parent=MsG0080048463.01;Name=MsG0080048463.01.T01;_AED=0.38;_eAED=0.38;_QI=0|1|0.66|1|1|1|3|629|208
contig326end exon 29486 30345 29486 ID=MsG0080048463.01.T01:exon:25203;Parent=MsG0080048463.01.T01
contig326end exon 30557 30604 30557 ID=MsG0080048463.01.T01:exon:25202;Parent=MsG0080048463.01.T01
contig326end exon 30694 31041 30694 ID=MsG0080048463.01.T01:exon:25201;Parent=MsG0080048463.01.T01
contig326end CDS 30694 31041 30694 ID=MsG0080048463.01.T01:cds;Parent=MsG0080048463.01.T01
contig326end CDS 30557 30604 30557 ID=MsG0080048463.01.T01:cds;Parent=MsG0080048463.01.T01
contig326end CDS 30115 30345 30115 ID=MsG0080048463.01.T01:cds;Parent=MsG0080048463.01.T01
contig326end three_prime_UTR 29486 30114 29486 ID=MsG0080048463.01.T01:three_prime_utr;Parent=MsG0080048463.01.T01
Gene Sequence

>MsG0080048463.01.T01

ATGTGTCAGGTTAGAGATGAAATAGAGCAGCTTATGGATGATGATGGTGATATGGCTGAAATGTACCTTACCGAGAAGAAAAGACGAATGGAATTGTCATTTTATGGAGATCAGTCTATGGTTGGATATAGACCGGTTGATGGTGCATCCATCTCTCTTCCAGTCTCTCCTGTTTCATCACCACCTGACTCTCACTCTCGGAGGCTTGAGAAGAGCTTGAGCATTGCTAGGAGTCGACACGAGAGCATGAGGAGTTCTGAAAGTAATAATGAAAATATAGAAGAACTTGAGATGTTGTTAGAAGCATACTTTGTTGTCATTGATAGCACTCTAAACAAGTTGACATCGTTAAAAGAATACATCGATGACACTGAAGATTTCATCAACATTCAACTGGATAATGTGCGGAATCAGCTTATCCAGTTTGAGCTTTTACTCACAACTGCAACATTTGTGGTTGCAATCTTTGGAGTGGTGGCAGGAATATTTGGGATGAACTTTGAAATTCCATTATTTGATGTCCCATCTGCATTTCAGTGGGTCCTTATAATAACAGGAGTTTGCGGAGTGTGTATATTTTCTGCATTTGTGTGGTTCTTCAAGTACAGAAGGCTCATGCCCCTATAA

Protein sequence

>MsG0080048463.01.T01

MCQVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMVGYRPVDGASISLPVSPVSSPPDSHSRRLEKSLSIARSRHESMRSSESNNENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFDVPSAFQWVLIITGVCGVCIFSAFVWFFKYRRLMPL*