AlfalfaGEDB | MsG0780041469.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041469.01

KEGG: K14007
GO: GO:0006886 GO:0006888 GO:0030127
PFAM: PF04815 PF08033

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041469.01.T01	KAF2303765.1	56.696	448	97	6	70	438	543	972	2.78E-155	476

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041469.01.T01	Q9SFU0	56.958	309	75	5	70	338	570	860	9.14E-102	329

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041469.01.T01	A0A6A6LTF5	56.696	448	97	6	70	438	543	972	1.33e-155	476

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0780041469.01	0.885426	8.215892e-72	5.636740e-68
MsG0080047825.01	MsG0780041469.01	0.853903	1.756390e-61	3.854173e-58
MsG0080048035.01	MsG0780041469.01	0.812739	3.642518e-51	2.334474e-48
MsG0080048058.01	MsG0780041469.01	0.888659	4.852406e-73	3.792813e-69
MsG0080048177.01	MsG0780041469.01	0.814673	1.366674e-51	9.228522e-49
MsG0080048178.01	MsG0780041469.01	0.822725	2.031418e-53	1.714267e-50
MsG0080048383.01	MsG0780041469.01	0.818454	1.943517e-52	1.455574e-49
MsG0080048461.01	MsG0780041469.01	0.828552	8.437321e-55	8.414355e-52
MsG0080048462.01	MsG0780041469.01	0.818044	2.406457e-52	1.781796e-49
MsG0080048588.01	MsG0780041469.01	0.805672	1.192151e-49	6.345280e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041469.01.T01	MTR_7g111710	70.358	307	33	5	70	336	552	840	9.57e-129	397
MsG0780041469.01.T01	MTR_7g111710	97.727	88	2	0	351	438	923	1010	8.00e-52	188
MsG0780041469.01.T01	MTR_1g112310	28.289	304	159	4	73	334	649	935	7.31e-26	111
MsG0780041469.01.T01	MTR_1g102090	52.941	68	32	0	1	68	1	68	1.93e-14	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041469.01.T01	AT3G07100	56.958	309	75	5	70	338	570	860	9.32e-103	329
MsG0780041469.01.T01	AT3G07100	63.636	88	32	0	351	438	941	1028	5.34e-33	133
MsG0780041469.01.T01	AT3G44340	27.742	310	152	8	73	334	635	920	6.53e-23	102
MsG0780041469.01.T01	AT3G44340	27.742	310	152	8	73	334	635	920	6.53e-23	102
MsG0780041469.01.T01	AT3G44340	27.742	310	152	8	73	334	635	920	6.53e-23	102
MsG0780041469.01.T01	AT3G44340	27.742	310	152	8	73	334	635	920	7.54e-23	102
MsG0780041469.01.T01	AT3G44340	27.742	310	152	8	73	334	635	920	7.54e-23	102

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Find 127 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTGCTTATCGCATG+GGG	0.647866	7:+91301503	None:intergenic
AAAAGTAGCAAAAGAAACTT+TGG	0.372177	7:-91306693	MsG0780041469.01.T01:CDS
AAAATTCATGCTAAGGTCCA+CGG	0.599864	7:-91304264	MsG0780041469.01.T01:CDS
AAACCTTGTTGAGGACCAGA+TGG	0.554437	7:-91301815	MsG0780041469.01.T01:CDS
AAACGAAAGTGTTCGAAGTA+AGG	0.467362	7:-91306625	MsG0780041469.01.T01:CDS
AAAGAAAGAGACCAAGAAGG+CGG	0.690922	7:-91306525	MsG0780041469.01.T01:intron
AAAGGGAATGCTTTAAAGCT+TGG	0.437795	7:-91306593	MsG0780041469.01.T01:CDS
AAAGTAGCAAAAGAAACTTT+GGG	0.542124	7:-91306692	MsG0780041469.01.T01:CDS
AAATATTTCGCAGACTGATT+TGG	0.320338	7:+91301109	None:intergenic
AAATCAACGGCTCTACGTGG+AGG	0.706155	7:-91303041	MsG0780041469.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTTCGCAGACTGATT+TGG	+	Chr7:91306640-91306659	None:intergenic	30.0%
AAATGCTGACAGAATTACAT+CGG	+	Chr7:91303068-91303087	None:intergenic	30.0%
AACTTACTGAATATCAAGCA+TGG	+	Chr7:91304248-91304267	None:intergenic	30.0%
AAGTAAGGTTCGAATCAAAA+GGG	-	Chr7:91301136-91301155	MsG0780041469.01.T01:three_prime_UTR	30.0%
AATAAACAACAATACACACG+AGG	-	Chr7:91303981-91304000	MsG0780041469.01.T01:intron	30.0%
ACCTTATAAGGTGAATAAGT+GGG	+	Chr7:91303875-91303894	None:intergenic	30.0%
ACTTCTGTTTAGTGATTTGA+AGG	-	Chr7:91306091-91306110	MsG0780041469.01.T01:intron	30.0%
ACTTGATGAATATCTTCTGA+AGG	-	Chr7:91304829-91304848	MsG0780041469.01.T01:intron	30.0%
AGACAGTTTATCCCTATTAT+TGG	+	Chr7:91304884-91304903	None:intergenic	30.0%
AGATCTAGTGATTAATGAGT+TGG	-	Chr7:91301716-91301735	MsG0780041469.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	91301036	91306732	91301036	ID=MsG0780041469.01;Name=MsG0780041469.01
Chr7	mRNA	91301036	91306732	91301036	ID=MsG0780041469.01.T01;Parent=MsG0780041469.01;Name=MsG0780041469.01.T01;_AED=0.43;_eAED=0.44;_QI=0\|0.37\|0.33\|1\|0.87\|0.77\|9\|477\|457
Chr7	exon	91301036	91301531	91301036	ID=MsG0780041469.01.T01:exon:18550;Parent=MsG0780041469.01.T01
Chr7	exon	91301745	91301983	91301745	ID=MsG0780041469.01.T01:exon:18549;Parent=MsG0780041469.01.T01
Chr7	exon	91302655	91302718	91302655	ID=MsG0780041469.01.T01:exon:18548;Parent=MsG0780041469.01.T01
Chr7	exon	91302996	91303230	91302996	ID=MsG0780041469.01.T01:exon:18547;Parent=MsG0780041469.01.T01
Chr7	exon	91303312	91303435	91303312	ID=MsG0780041469.01.T01:exon:18546;Parent=MsG0780041469.01.T01
Chr7	exon	91304100	91304311	91304100	ID=MsG0780041469.01.T01:exon:18545;Parent=MsG0780041469.01.T01
Chr7	exon	91304454	91304558	91304454	ID=MsG0780041469.01.T01:exon:18544;Parent=MsG0780041469.01.T01
Chr7	exon	91305086	91305254	91305086	ID=MsG0780041469.01.T01:exon:18543;Parent=MsG0780041469.01.T01
Chr7	exon	91306526	91306732	91306526	ID=MsG0780041469.01.T01:exon:18542;Parent=MsG0780041469.01.T01
Chr7	CDS	91306526	91306732	91306526	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91305086	91305254	91305086	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91304454	91304558	91304454	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91304100	91304311	91304100	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91303312	91303435	91303312	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91302996	91303230	91302996	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91302655	91302718	91302655	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91301745	91301983	91301745	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	CDS	91301513	91301531	91301513	ID=MsG0780041469.01.T01:cds;Parent=MsG0780041469.01.T01
Chr7	three_prime_UTR	91301036	91301512	91301036	ID=MsG0780041469.01.T01:three_prime_utr;Parent=MsG0780041469.01.T01

Gene Sequence

>MsG0780041469.01.T01

ATGGTACATGTGATTAGAAAAGTAGCAAAAGAAACTTTGGGAGAATCAAAATGTTTTGGACCGGGTGTAAAGAATCTTGGTGGTGAAACGAAAGTGTTCGAAGTAAGGTTCGAATCAAAAGGGAATGCTTTAAAGCTTGGTCCAAGTGTAAAAAATATCAACACTTGGAAAATTATAATGAAGCTAAAGAAAGAGACCAAGAAGGCGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAATACACTTCCATCTCTTGGTGTTGGTCGCTTGAAATTACGGGGAGACGATTCACGTGTTTATGGGACAGATAAAGAACATGGACTGAGACTGCCCGAAGATCCTTTTATAAGCAGATGGCTGCTGAGTTTTCTAACTTTCCAATCAGCCATTCATGGGGAGAAATTGAGTCATGAATTAAGGAGAGACCTCACCAGAGAGACTGCATGGGAAGCTGTAATGCGTATCAGATGTGCAAAAGGCGTTCGTTTCACAACTTATCATGGAAAATTCATGCTAAGGTCCACGGATTTGTTGGCACTTCCAGCTGTAGATTGTGATAAGGCCTTCGCCATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACTATTTACTTTCAAGTTGCATTGCTGTATCCTTTCTTCAAGAATTCTAAGATGAAATCTAATATACTCATGAGCTTATTGTATACTGCATTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTGCCAGTAGTACAGACTTGGCAGATATCTATCGCCTGGCTGATACTGGTGCAGTTGTCTCTCTATTTTGTAGGCTAGAAAACATCGTCCAAAAACTGGAAGATGCACGGAATGCTGTGCAACTAAGAATTGTGAAGCCCTCAAGAGAGTATCGAAATCTTTATGCTGTGCAACATCGCTTGGCCAACAGGATGATATATCCAGAGTCTTTAAAGCTCCTAATGTTGTATGGATTAGCTCTTTGTAAATCAACGGCTCTACGTGGAGGTATGGCGATGTTTCATTGGATGATCGATGTGCAGCAGGACATACAGGTGATTGCACCTGATATAGCAAAGAATTTACTCGGTGCAGACTTCGCGGCAGAATTATCAAAGGCTACTCTCCATGAGCATAATAATGAAATGTCAAGGAGGCTGATGAGGGTACTTGAAAAATTAAGAAATGATGATCGTGCATATTACCAGCTCTGCCACCTTGTGAGGCAAGGTGAGCAGCCCAAAGAAGGATTCCTCCTCCTTACAAACCTTGTTGAGGACCAGATGGGTGGTAACAATGGGTACGTTGATTGGATGTACAGATATCCCGACAAGTGCAACACTCATAATATATATAGATTCTTCCCCATGCGATAA

Protein sequence

>MsG0780041469.01.T01

MVHVIRKVAKETLGESKCFGPGVKNLGGETKVFEVRFESKGNALKLGPSVKNINTWKIIMKLKKETKKASQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFISRWLLSFLTFQSAIHGEKLSHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGKFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTIYFQVALLYPFFKNSKMKSNILMSLLYTALWRKAYQSTHNGSASSTDLADIYRLADTGAVVSLFCRLENIVQKLEDARNAVQLRIVKPSREYRNLYAVQHRLANRMIYPESLKLLMLYGLALCKSTALRGGMAMFHWMIDVQQDIQVIAPDIAKNLLGADFAAELSKATLHEHNNEMSRRLMRVLEKLRNDDRAYYQLCHLVRQGEQPKEGFLLLTNLVEDQMGGNNGYVDWMYRYPDKCNTHNIYRFFPMR*