AlfalfaGEDB | MsG0180000090.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000090.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000090.01	MsG0180000091.01	0.839528	1.501644e-57	2.079338e-54
MsG0180000090.01	MsG0180000470.01	0.805700	1.176346e-49	6.265831e-47
MsG0180000090.01	MsG0180000652.01	0.800817	1.206036e-48	5.669792e-46
MsG0180000090.01	MsG0180001971.01	0.823024	1.730721e-53	1.472967e-50
MsG0180000090.01	MsG0180003193.01	0.801656	8.121770e-49	3.899995e-46
MsG0180000090.01	MsG0180004765.01	0.811461	6.920109e-51	4.286257e-48
MsG0180000090.01	MsG0280007066.01	0.800099	1.689349e-48	7.798615e-46
MsG0180000090.01	MsG0280010807.01	0.800136	1.660271e-48	7.671691e-46
MsG0180000090.01	MsG0380016285.01	0.801060	1.075973e-48	5.089957e-46
MsG0180000090.01	MsG0380017220.01	0.811539	6.657180e-51	4.131842e-48

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PPI

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Gene1	Gene2	Type
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Find 23 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGCATGCTGGTGCTGGCA+TGG	0.596415	1:+1325175	MsG0180000090.01.T01:CDS
AGTAGGTGGTAGAAAATGAG+TGG	0.610399	1:-1325038	None:intergenic
AGTGCTACAAGGGGTAATGG+AGG	0.670124	1:-1325132	None:intergenic
CAAAAGGCTGCTCGAGTAGG+TGG	0.573912	1:-1325052	None:intergenic
CAACAAAAGGCTGCTCGAGT+AGG	0.570625	1:-1325055	None:intergenic
CCACCAGTACAAGAGCATGC+TGG	0.634792	1:+1325164	MsG0180000090.01.T01:CDS
CCAGCATGCTCTTGTACTGG+TGG	0.571309	1:-1325164	None:intergenic
CTACAAGGGGTAATGGAGGT+TGG	0.550986	1:-1325128	None:intergenic
CTTAGCCGGCTTGCAGCTGA+AGG	0.537332	1:-1324996	None:intergenic
CTTTCAATAAACTACTTAGC+CGG	0.514461	1:-1325010	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCAATAAACTACTTAGC+CGG	-	Chr1:1325013-1325032	None:intergenic	30.0%
GAAGTGGATATACGTTAAAG+TGG	+	Chr1:1325088-1325107	MsG0180000090.01.T01:CDS	35.0%
TTGAATCATCGTATGCAACT+TGG	+	Chr1:1325198-1325217	MsG0180000090.01.T01:CDS	35.0%
AGTAGGTGGTAGAAAATGAG+TGG	-	Chr1:1325041-1325060	None:intergenic	40.0%
CAACAAAAGGCTGCTCGAGT+AGG	-	Chr1:1325058-1325077	None:intergenic	50.0%
GACAGTGCTACAAGGGGTAA+TGG	-	Chr1:1325138-1325157	None:intergenic	50.0%
TTCCAGCTGTGCCCAACAAA+AGG	-	Chr1:1325071-1325090	None:intergenic	50.0%
CAAAAGGCTGCTCGAGTAGG+TGG	-	Chr1:1325055-1325074	None:intergenic	55.0%
CCAGCATGCTCTTGTACTGG+TGG	-	Chr1:1325167-1325186	None:intergenic	55.0%
GCACCAGCATGCTCTTGTAC+TGG	-	Chr1:1325170-1325189	None:intergenic	55.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	1324993	1325238	1324993	ID=MsG0180000090.01;Name=MsG0180000090.01
Chr1	mRNA	1324993	1325238	1324993	ID=MsG0180000090.01.T01;Parent=MsG0180000090.01;Name=MsG0180000090.01.T01;_AED=0.34;_eAED=0.34;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|81
Chr1	exon	1324993	1325238	1324993	ID=MsG0180000090.01.T01:exon:7337;Parent=MsG0180000090.01.T01
Chr1	CDS	1324993	1325238	1324993	ID=MsG0180000090.01.T01:cds;Parent=MsG0180000090.01.T01

Gene Sequence	>MsG0180000090.01.T01 ATGCCTTCAGCTGCAAGCCGGCTAAGTAGTTTATTGAAAGCACTTCCACTCATTTTCTACCACCTACTCGAGCAGCCTTTTGTTGGGCACAGCTGGAAGTGGATATACGTTAAAGTGGTTGTACAGCAAGAATTGCCAACCTCCATTACCCCTTGTAGCACTGTCTCAGAACCACCAGTACAAGAGCATGCTGGTGCTGGCATGGTTGAATCATCGTATGCAACTTGGTTCAATGCCAAGTCCTGA
Protein sequence	>MsG0180000090.01.T01 MPSAASRLSSLLKALPLIFYHLLEQPFVGHSWKWIYVKVVVQQELPTSITPCSTVSEPPVQEHAGAGMVESSYATWFNAKS*