AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023251.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023251.01.T01 MTR_8g089895 94.660 206 11 0 1 206 39 244 1.41e-132 375
MsG0480023251.01.T01 MTR_3g086790 62.567 187 55 5 1 175 42 225 2.35e-67 209
MsG0480023251.01.T01 MTR_3g080100 52.564 156 70 2 15 170 19 170 1.98e-45 150
MsG0480023251.01.T01 MTR_3g080100 52.564 156 70 2 15 170 58 209 4.48e-45 150
MsG0480023251.01.T01 MTR_8g469430 50.000 164 63 3 7 169 81 226 4.22e-42 144
MsG0480023251.01.T01 MTR_5g038280 43.902 205 80 4 5 180 77 275 6.10e-42 144
MsG0480023251.01.T01 MTR_6g007647 61.111 108 42 0 15 122 32 139 8.02e-40 137
MsG0480023251.01.T01 MTR_5g039000 45.455 176 87 3 2 170 65 238 1.06e-39 137
MsG0480023251.01.T01 MTR_6g007647 61.111 108 42 0 15 122 66 173 2.36e-39 136
MsG0480023251.01.T01 MTR_6g011610 45.902 183 82 5 5 171 86 267 2.66e-39 136
MsG0480023251.01.T01 MTR_6g011610 45.902 183 82 5 5 171 67 248 4.56e-39 135
MsG0480023251.01.T01 MTR_8g468210 63.265 98 36 0 14 111 75 172 2.50e-38 134
MsG0480023251.01.T01 MTR_4g107650 62.245 98 37 0 15 112 94 191 4.44e-35 126
MsG0480023251.01.T01 MTR_7g010020 58.763 97 40 0 15 111 79 175 8.73e-31 114
MsG0480023251.01.T01 MTR_8g026960 48.544 103 53 0 23 125 41 143 6.49e-29 108
MsG0480023251.01.T01 MTR_7g103340 51.485 101 42 1 15 115 62 155 1.15e-27 105
MsG0480023251.01.T01 MTR_1g061660 41.135 141 73 3 15 155 58 188 9.33e-27 102
MsG0480023251.01.T01 MTR_3g092150 53.846 91 42 0 18 108 40 130 2.46e-26 101
MsG0480023251.01.T01 MTR_5g019680 54.455 101 37 1 16 116 53 144 5.64e-24 94.7
MsG0480023251.01.T01 MTR_4g100550 45.902 122 52 2 12 126 116 230 5.85e-22 90.9
MsG0480023251.01.T01 MTR_5g019650 61.972 71 27 0 16 86 53 123 1.97e-21 88.2
MsG0480023251.01.T01 MTR_5g013010 43.443 122 55 2 12 126 132 246 8.30e-19 82.8
MsG0480023251.01.T01 MTR_4g097600 48.113 106 46 2 5 110 118 214 9.06e-19 82.4
MsG0480023251.01.T01 MTR_4g126900 47.253 91 41 1 19 109 91 174 1.02e-18 81.3
MsG0480023251.01.T01 MTR_1g017090 50.000 96 41 1 15 110 129 217 2.10e-18 81.6
MsG0480023251.01.T01 MTR_2g061030 44.340 106 52 1 5 110 189 287 6.80e-18 80.9
MsG0480023251.01.T01 MTR_1g054285 46.226 106 46 2 5 110 147 241 2.17e-17 79.0
MsG0480023251.01.T01 MTR_8g006705 42.857 119 54 2 15 126 145 256 2.29e-17 79.0
MsG0480023251.01.T01 MTR_5g014890 47.423 97 44 1 14 110 121 210 2.71e-17 78.2
MsG0480023251.01.T01 MTR_7g093430 46.875 96 44 1 15 110 159 247 3.86e-17 78.2
MsG0480023251.01.T01 MTR_3g103590 49.351 77 39 0 11 87 140 216 1.59e-14 70.9
MsG0480023251.01.T01 MTR_4g084750 46.154 91 48 1 11 101 61 150 9.13e-14 67.4
MsG0480023251.01.T01 MTR_2g038625 42.017 119 56 4 5 123 76 181 1.77e-13 67.0
MsG0480023251.01.T01 MTR_2g038580 42.017 119 56 4 5 123 76 181 1.77e-13 67.0
MsG0480023251.01.T01 MTR_5g013010 55.357 56 25 0 12 67 132 187 4.09e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023251.01.T01 AT2G22430 60.000 155 53 1 15 160 61 215 1.13e-56 182
MsG0480023251.01.T01 AT4G40060 50.242 207 84 7 1 193 34 235 1.49e-54 176
MsG0480023251.01.T01 AT5G65310 76.471 102 24 0 14 115 70 171 2.95e-52 171
MsG0480023251.01.T01 AT5G65310 76.471 102 24 0 14 115 52 153 3.49e-52 170
MsG0480023251.01.T01 AT3G01470 47.097 155 72 1 15 159 67 221 3.63e-39 135
MsG0480023251.01.T01 AT1G69780 58.559 111 46 0 14 124 83 193 9.33e-39 135
MsG0480023251.01.T01 AT3G01220 56.364 110 48 0 2 111 73 182 6.17e-37 130
MsG0480023251.01.T01 AT5G15150 43.529 170 81 4 2 171 101 255 1.87e-36 130
MsG0480023251.01.T01 AT1G26960 56.757 111 48 0 14 124 69 179 1.49e-34 123
MsG0480023251.01.T01 AT2G46680 50.400 125 60 1 17 139 33 157 2.03e-33 120
MsG0480023251.01.T01 AT2G46680 48.780 123 63 0 17 139 33 155 3.49e-32 117
MsG0480023251.01.T01 AT3G61890 46.218 119 61 1 19 137 33 148 5.02e-30 111
MsG0480023251.01.T01 AT1G27045 56.481 108 46 1 16 123 68 174 7.89e-30 110
MsG0480023251.01.T01 AT1G27045 56.481 108 46 1 16 123 25 131 9.03e-30 108
MsG0480023251.01.T01 AT1G27045 56.481 108 46 1 16 123 25 131 9.03e-30 108
MsG0480023251.01.T01 AT1G27045 56.481 108 46 1 16 123 17 123 9.57e-30 108
MsG0480023251.01.T01 AT5G03790 53.000 100 40 1 16 115 77 169 6.83e-27 103
MsG0480023251.01.T01 AT1G27045 58.065 93 39 0 16 108 68 160 7.38e-27 103
MsG0480023251.01.T01 AT5G03790 62.500 72 27 0 16 87 77 148 6.00e-25 97.1
MsG0480023251.01.T01 AT2G36610 45.794 107 43 2 15 113 70 169 2.51e-23 92.4
MsG0480023251.01.T01 AT2G18550 36.047 172 80 5 16 177 61 212 3.11e-22 90.5
MsG0480023251.01.T01 AT5G66700 48.980 98 50 0 16 113 71 168 5.18e-22 90.1
MsG0480023251.01.T01 AT4G36740 52.577 97 39 1 16 112 55 144 1.90e-21 88.2
MsG0480023251.01.T01 AT4G36740 52.577 97 39 1 16 112 56 145 1.92e-21 88.2
MsG0480023251.01.T01 AT5G53980 44.444 99 55 0 16 114 11 109 1.78e-20 84.3
MsG0480023251.01.T01 AT5G06710 48.113 106 44 2 5 110 183 277 6.15e-19 83.6
MsG0480023251.01.T01 AT3G60390 46.226 106 50 1 5 110 151 249 9.44e-18 80.1
MsG0480023251.01.T01 AT4G37790 46.226 106 47 2 5 110 118 213 2.20e-17 78.6
MsG0480023251.01.T01 AT4G16780 48.958 96 42 1 15 110 128 216 2.50e-17 78.6
MsG0480023251.01.T01 AT2G44910 47.917 96 43 1 15 110 162 250 8.05e-17 77.4
MsG0480023251.01.T01 AT2G22800 46.226 106 47 2 5 110 105 200 1.84e-16 75.9
MsG0480023251.01.T01 AT4G17460 46.226 106 50 1 5 110 124 222 5.11e-16 75.1
MsG0480023251.01.T01 AT2G01430 36.111 144 81 3 2 141 122 258 7.82e-16 74.3
MsG0480023251.01.T01 AT5G47370 46.226 106 50 1 5 110 119 217 1.61e-15 73.6
MsG0480023251.01.T01 AT5G06710 52.381 63 26 1 5 67 183 241 4.07e-12 63.9
MsG0480023251.01.T01 AT2G01430 47.143 70 34 1 2 68 122 191 8.11e-12 62.4

Find 92 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTCTCTTGTAAAATTT+TGG 0.074917 4:+82669431 MsG0480023251.01.T01:three_prime_UTR
TGGATCGTTCTATCGGATTT+AGG 0.239470 4:+82669730 MsG0480023251.01.T01:three_prime_UTR
TCATCTCATCTAAGCGTTAT+TGG 0.260502 4:+82669710 MsG0480023251.01.T01:three_prime_UTR
TTTGGATCCACAATACTAAA+AGG 0.271471 4:-82669598 None:intergenic
GCAAGCTTCACTTTCCTATC+TGG 0.289532 4:-82668140 None:intergenic
AACGCAGCAATTTCTTCATC+TGG 0.296534 4:+82668910 MsG0480023251.01.T01:CDS
AAGTTTAAGTGCATCATAAT+TGG 0.307318 4:-82668267 None:intergenic
GCCCCGAGGGGCACTGGTTA+AGG 0.316294 4:+82669801 MsG0480023251.01.T01:three_prime_UTR
AAACAATTGGAAAGAGATTA+TGG 0.321657 4:+82668233 MsG0480023251.01.T01:CDS
CATTCTTAGATCCGATTCTA+AGG 0.324209 4:+82668774 MsG0480023251.01.T01:CDS
ATAATCTCTTTCCAATTGTT+TGG 0.328373 4:-82668231 None:intergenic
GAAGATATTTACTATTCTAA+TGG 0.344689 4:+82669463 MsG0480023251.01.T01:three_prime_UTR
TTCCTTAACCAGTGCCCCTC+GGG 0.366227 4:-82669803 None:intergenic
GGGAGAGTTTACCGCACATT+TGG 0.366380 4:-82669616 None:intergenic
CATTGATTACACAGCTTTCA+AGG 0.373554 4:-82669845 None:intergenic
AGGTAAAGGAGTAAAGATAA+TGG 0.390626 4:-82669494 None:intergenic
TTCAGAACAATTAAACTTCA+AGG 0.401312 4:-82668976 None:intergenic
CTTCCTTAACCAGTGCCCCT+CGG 0.413999 4:-82669804 None:intergenic
TGTGGATCAAGTTAAGGCTT+TGG 0.415440 4:+82668085 MsG0480023251.01.T01:CDS
GGTAAAGGAGTAAAGATAAT+GGG 0.420804 4:-82669493 None:intergenic
TTCAAAACCGTCGTGCTAGA+TGG 0.422496 4:+82668204 MsG0480023251.01.T01:CDS
GCTTGGTTTGCAACCAAGAC+AGG 0.426710 4:+82668169 MsG0480023251.01.T01:CDS
GCTATGTACCTCTTTGAGTA+AGG 0.428563 4:-82668321 None:intergenic
CCTAGGTTCAAATCCACTCT+TGG 0.435239 4:-82669659 None:intergenic
GTGCGTACGTGGGTGTTACT+CGG 0.437407 4:-82669555 None:intergenic
CGTAATTGCACGTGCGTACG+TGG 0.442791 4:-82669566 None:intergenic
GTGAAGCTTGCTCAAGAGCT+TGG 0.455028 4:+82668152 MsG0480023251.01.T01:CDS
AACCAAGACAGGTTGCTGTT+TGG 0.456352 4:+82668180 MsG0480023251.01.T01:CDS
AACAACCACCAACGCTTCAA+TGG 0.458388 4:+82669114 MsG0480023251.01.T01:three_prime_UTR
TCAGACGCAGTTTGTGAAGA+TGG 0.461193 4:+82669040 MsG0480023251.01.T01:three_prime_UTR
ACCAGTGCCCCTCGGGGCAC+TGG 0.461940 4:-82669796 None:intergenic
ACCAGTGCCCCGAGGGGCAC+TGG 0.464565 4:+82669795 MsG0480023251.01.T01:three_prime_UTR
CCAAGAGTGGATTTGAACCT+AGG 0.465714 4:+82669659 MsG0480023251.01.T01:three_prime_UTR
ACGCTTAGATGAGATGATAT+AGG 0.471754 4:-82669704 None:intergenic
ACTAAGTGTGGATCAAGTTA+AGG 0.472988 4:+82668079 MsG0480023251.01.T01:CDS
AACCAAACAGCAACCTGTCT+TGG 0.475030 4:-82668182 None:intergenic
GTAGTTTAAGTCCTTAGAAT+CGG 0.480930 4:-82668785 None:intergenic
GAAGAACCGTCTTTGAAATC+CGG 0.484012 4:-82668850 None:intergenic
AGTCTTCGTTTCTTCTGCCC+TGG 0.485359 4:-82668059 None:intergenic
AGTTGCTTCACTATTTCCTC+CGG 0.491792 4:+82668831 MsG0480023251.01.T01:CDS
GAGAGAAGTTAAAGAAAGTG+AGG 0.495996 4:+82669290 MsG0480023251.01.T01:three_prime_UTR
TCTAGCTTAATCAAGATCCT+AGG 0.499847 4:-82669676 None:intergenic
GAGAAGTTAAAGAAAGTGAG+GGG 0.504805 4:+82669292 MsG0480023251.01.T01:three_prime_UTR
TTAACTTTGCTTTCCAAGAG+TGG 0.510277 4:+82669646 MsG0480023251.01.T01:three_prime_UTR
GACTCATGAGTTTATTTGAG+AGG 0.510867 4:+82669179 MsG0480023251.01.T01:three_prime_UTR
TAGATGGAAGACCAAACAAT+TGG 0.511361 4:+82668220 MsG0480023251.01.T01:CDS
GCGTTATTGGATCGTTCTAT+CGG 0.512212 4:+82669723 MsG0480023251.01.T01:three_prime_UTR
ACGCAGCAATTTCTTCATCT+GGG 0.521049 4:+82668911 MsG0480023251.01.T01:CDS
AATGGTATTGTTCAGAGGAG+TGG 0.534262 4:+82669132 MsG0480023251.01.T01:three_prime_UTR
TTCATCTAGTCCTTCCATCA+CGG 0.534291 4:-82668018 None:intergenic
ACCTTGCATAGTAGTTCTGT+CGG 0.537846 4:+82669513 MsG0480023251.01.T01:three_prime_UTR
AAAACAAGCTTGAACCAGAT+AGG 0.540809 4:+82668126 MsG0480023251.01.T01:CDS
AGAGAAGTTAAAGAAAGTGA+GGG 0.544627 4:+82669291 MsG0480023251.01.T01:three_prime_UTR
ATGGAAGGACTAGATGAAGA+AGG 0.546306 4:+82668023 MsG0480023251.01.T01:CDS
CTTAGAATCGGATCTAAGAA+TGG 0.550362 4:-82668773 None:intergenic
TTTCCTCCGGATTTCAAAGA+CGG 0.551128 4:+82668844 MsG0480023251.01.T01:CDS
GAACAATACCATTGAAGCGT+TGG 0.555180 4:-82669122 None:intergenic
AGAACTACTATGCAAGGTAA+AGG 0.560844 4:-82669508 None:intergenic
ATTGTTAACCAGTGCCCCGA+GGG 0.563308 4:+82669788 MsG0480023251.01.T01:three_prime_UTR
CAATGAAACCTTACTCAAAG+AGG 0.564712 4:+82668313 MsG0480023251.01.T01:CDS
CAATACCATTGAAGCGTTGG+TGG 0.571844 4:-82669119 None:intergenic
GGTGATGATCGCATGGTGTA+GGG 0.573835 4:+82669328 MsG0480023251.01.T01:three_prime_UTR
GATGATGATTAAGACCGTGC+GGG 0.577156 4:+82669367 MsG0480023251.01.T01:three_prime_UTR
AGGTGATGATCGCATGGTGT+AGG 0.577977 4:+82669327 MsG0480023251.01.T01:three_prime_UTR
GAATTTCAGTCCGTGATGGA+AGG 0.580376 4:+82668008 MsG0480023251.01.T01:exon
TCCGACAGAACTACTATGCA+AGG 0.581868 4:-82669514 None:intergenic
AACTTCAAGGAAGAAGAACC+AGG 0.601960 4:-82668963 None:intergenic
GGTGTAGGGTCGGAGATGAA+AGG 0.608295 4:+82669342 MsG0480023251.01.T01:three_prime_UTR
GCTTCAATGGTATTGTTCAG+AGG 0.609163 4:+82669127 MsG0480023251.01.T01:three_prime_UTR
AGAAGTTAAAGAAAGTGAGG+GGG 0.610194 4:+82669293 MsG0480023251.01.T01:three_prime_UTR
GAAGGATGTGTTGATGAACC+AGG 0.610489 4:+82668041 MsG0480023251.01.T01:CDS
ATGATGATTAAGACCGTGCG+GGG 0.615642 4:+82669368 MsG0480023251.01.T01:three_prime_UTR
AAGGGAATTTCAGTCCGTGA+TGG 0.618116 4:+82668004 None:intergenic
ATGATCGCATGGTGTAGGGT+CGG 0.618549 4:+82669332 MsG0480023251.01.T01:three_prime_UTR
GAAGAAACGAAGACTAAGTG+TGG 0.625631 4:+82668067 MsG0480023251.01.T01:CDS
GTAAGGTTTCATTGTCACGT+TGG 0.635299 4:-82668304 None:intergenic
TCCTTAACCAGTGCCCCTCG+GGG 0.644842 4:-82669802 None:intergenic
GTAATTGCACGTGCGTACGT+GGG 0.644889 4:-82669565 None:intergenic
GGTTGAAGGTGATGATCGCA+TGG 0.654524 4:+82669321 MsG0480023251.01.T01:three_prime_UTR
TGGTCTTCCATCTAGCACGA+CGG 0.655214 4:-82668211 None:intergenic
GATGATTAAGACCGTGCGGG+GGG 0.656865 4:+82669370 MsG0480023251.01.T01:three_prime_UTR
AAGCAATTACTCATAGAAGA+CGG 0.662929 4:-82669011 None:intergenic
GAACCGTCTTTGAAATCCGG+AGG 0.667219 4:-82668847 None:intergenic
AAGGATGTGTTGATGAACCA+GGG 0.673289 4:+82668042 MsG0480023251.01.T01:CDS
TGATGATTAAGACCGTGCGG+GGG 0.676961 4:+82669369 MsG0480023251.01.T01:three_prime_UTR
ATTGCAAGAATCAGAAAACA+CGG 0.678412 4:+82668735 MsG0480023251.01.T01:CDS
TATTGTTAACCAGTGCCCCG+AGG 0.695604 4:+82669787 MsG0480023251.01.T01:three_prime_UTR
AGAATCGGATCTAAGAATGG+CGG 0.697638 4:-82668770 None:intergenic
TGATGATGATTAAGACCGTG+CGG 0.699818 4:+82669366 MsG0480023251.01.T01:three_prime_UTR
GTATTGTGGATCCAAATGTG+CGG 0.711833 4:+82669605 MsG0480023251.01.T01:three_prime_UTR
GTACGCACGTGCAATTACGA+AGG 0.716791 4:+82669570 MsG0480023251.01.T01:three_prime_UTR
TTGTTAACCAGTGCCCCGAG+GGG 0.725704 4:+82669789 MsG0480023251.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATATATTTAAAATAA+GGG + Chr4:82669764-82669783 MsG0480023251.01.T01:three_prime_UTR 0.0%
!!! TTTTTTATATATTTAAAATA+AGG + Chr4:82669763-82669782 MsG0480023251.01.T01:three_prime_UTR 0.0%
!! TAAAATACATTTATATGCTA+AGG - Chr4:82668527-82668546 None:intergenic 15.0%
!! GAAGATATTTACTATTCTAA+TGG + Chr4:82669463-82669482 MsG0480023251.01.T01:three_prime_UTR 20.0%
!!! AAAACTCTCTTGTAAAATTT+TGG + Chr4:82669431-82669450 MsG0480023251.01.T01:three_prime_UTR 20.0%
!!! ATTCATTAATCCATTTTTAC+AGG - Chr4:82669258-82669277 None:intergenic 20.0%
!!! ATTGTATCATATGCTTATTT+TGG + Chr4:82668623-82668642 MsG0480023251.01.T01:intron 20.0%
!!! GTAAAAATGGATTAATGAAT+TGG + Chr4:82669258-82669277 MsG0480023251.01.T01:three_prime_UTR 20.0%
!!! TCTTGTAAAATTTTGGAATT+GGG + Chr4:82669438-82669457 MsG0480023251.01.T01:three_prime_UTR 20.0%
!!! TTCATTAATCCATTTTTACA+GGG - Chr4:82669257-82669276 None:intergenic 20.0%
! AAAAATAAGACATTGTGCAA+CGG + Chr4:82669212-82669231 MsG0480023251.01.T01:three_prime_UTR 25.0%
! AAACAATTGGAAAGAGATTA+TGG + Chr4:82668233-82668252 MsG0480023251.01.T01:CDS 25.0%
! AAAGCAAAGTTAAAAACTTG+GGG - Chr4:82669639-82669658 None:intergenic 25.0%
! AACTACGATTGTTTCAAAAA+CGG + Chr4:82668802-82668821 MsG0480023251.01.T01:CDS 25.0%
! AAGTTTAAGTGCATCATAAT+TGG - Chr4:82668270-82668289 None:intergenic 25.0%
! ATAATCTCTTTCCAATTGTT+TGG - Chr4:82668234-82668253 None:intergenic 25.0%
! ATAGCTATACTATACTTCTT+TGG + Chr4:82668339-82668358 MsG0480023251.01.T01:intron 25.0%
! GAAAGCAAAGTTAAAAACTT+GGG - Chr4:82669640-82669659 None:intergenic 25.0%
! TTAGTGTATCAGATATTCAA+GGG - Chr4:82668450-82668469 None:intergenic 25.0%
! TTCAGAACAATTAAACTTCA+AGG - Chr4:82668979-82668998 None:intergenic 25.0%
! TTGAATATCTGATACACTAA+GGG + Chr4:82668450-82668469 MsG0480023251.01.T01:intron 25.0%
!! TATACACTCTAAAGATACTT+CGG - Chr4:82668574-82668593 None:intergenic 25.0%
!!! CTCTTGTAAAATTTTGGAAT+TGG + Chr4:82669437-82669456 MsG0480023251.01.T01:three_prime_UTR 25.0%
AAAATCGATCCCTGTAAAAA+TGG + Chr4:82669245-82669264 MsG0480023251.01.T01:three_prime_UTR 30.0%
AAGCAATTACTCATAGAAGA+CGG - Chr4:82669014-82669033 None:intergenic 30.0%
AGAGAAGTTAAAGAAAGTGA+GGG + Chr4:82669291-82669310 MsG0480023251.01.T01:three_prime_UTR 30.0%
AGGTAAAGGAGTAAAGATAA+TGG - Chr4:82669497-82669516 None:intergenic 30.0%
ATTGCAAGAATCAGAAAACA+CGG + Chr4:82668735-82668754 MsG0480023251.01.T01:CDS 30.0%
CTTAGTGTATCAGATATTCA+AGG - Chr4:82668451-82668470 None:intergenic 30.0%
CTTGAATATCTGATACACTA+AGG + Chr4:82668449-82668468 MsG0480023251.01.T01:intron 30.0%
GGAAAGCAAAGTTAAAAACT+TGG - Chr4:82669641-82669660 None:intergenic 30.0%
GGTAAAGGAGTAAAGATAAT+GGG - Chr4:82669496-82669515 None:intergenic 30.0%
GTAGTTTAAGTCCTTAGAAT+CGG - Chr4:82668788-82668807 None:intergenic 30.0%
TAGTGTATCAGATATTCAAG+GGG - Chr4:82668449-82668468 None:intergenic 30.0%
TTTGGATCCACAATACTAAA+AGG - Chr4:82669601-82669620 None:intergenic 30.0%
!!! GTTCTGTCGGATTTTTTTTT+AGG + Chr4:82669526-82669545 MsG0480023251.01.T01:three_prime_UTR 30.0%
!!! TATCATATGCTTATTTTGGC+AGG + Chr4:82668627-82668646 MsG0480023251.01.T01:intron 30.0%
AAAACAAGCTTGAACCAGAT+AGG + Chr4:82668126-82668145 MsG0480023251.01.T01:CDS 35.0%
AATATCTGATACACTAAGGG+CGG + Chr4:82668453-82668472 MsG0480023251.01.T01:intron 35.0%
ACGCTTAGATGAGATGATAT+AGG - Chr4:82669707-82669726 None:intergenic 35.0%
ACTAAGTGTGGATCAAGTTA+AGG + Chr4:82668079-82668098 MsG0480023251.01.T01:CDS 35.0%
AGAACTACTATGCAAGGTAA+AGG - Chr4:82669511-82669530 None:intergenic 35.0%
AGAAGTTAAAGAAAGTGAGG+GGG + Chr4:82669293-82669312 MsG0480023251.01.T01:three_prime_UTR 35.0%
AGTGTATCAGATATTCAAGG+GGG - Chr4:82668448-82668467 None:intergenic 35.0%
ATACTTCGGTACAATTCAGA+TGG - Chr4:82668560-82668579 None:intergenic 35.0%
CAATGAAACCTTACTCAAAG+AGG + Chr4:82668313-82668332 MsG0480023251.01.T01:CDS 35.0%
CATTCTTAGATCCGATTCTA+AGG + Chr4:82668774-82668793 MsG0480023251.01.T01:CDS 35.0%
CTTAGAATCGGATCTAAGAA+TGG - Chr4:82668776-82668795 None:intergenic 35.0%
GACTCATGAGTTTATTTGAG+AGG + Chr4:82669179-82669198 MsG0480023251.01.T01:three_prime_UTR 35.0%
GAGAAGTTAAAGAAAGTGAG+GGG + Chr4:82669292-82669311 MsG0480023251.01.T01:three_prime_UTR 35.0%
GAGAGAAGTTAAAGAAAGTG+AGG + Chr4:82669290-82669309 MsG0480023251.01.T01:three_prime_UTR 35.0%
GATTGTTTCAAAAACGGTGA+TGG + Chr4:82668808-82668827 MsG0480023251.01.T01:CDS 35.0%
TAGATGGAAGACCAAACAAT+TGG + Chr4:82668220-82668239 MsG0480023251.01.T01:CDS 35.0%
TCATCTCATCTAAGCGTTAT+TGG + Chr4:82669710-82669729 MsG0480023251.01.T01:three_prime_UTR 35.0%
TTAACTTTGCTTTCCAAGAG+TGG + Chr4:82669646-82669665 MsG0480023251.01.T01:three_prime_UTR 35.0%
! CATTGATTACACAGCTTTCA+AGG - Chr4:82669848-82669867 None:intergenic 35.0%
! GGCTAATCCTTTTAGTATTG+TGG + Chr4:82669591-82669610 MsG0480023251.01.T01:three_prime_UTR 35.0%
! TCTAGCTTAATCAAGATCCT+AGG - Chr4:82669679-82669698 None:intergenic 35.0%
!!! ATGCTTATTTTGGCAGGTTA+AGG + Chr4:82668633-82668652 MsG0480023251.01.T01:intron 35.0%
AACGCAGCAATTTCTTCATC+TGG + Chr4:82668910-82668929 MsG0480023251.01.T01:CDS 40.0%
AACTTCAAGGAAGAAGAACC+AGG - Chr4:82668966-82668985 None:intergenic 40.0%
AATGGTATTGTTCAGAGGAG+TGG + Chr4:82669132-82669151 MsG0480023251.01.T01:three_prime_UTR 40.0%
ACGCAGCAATTTCTTCATCT+GGG + Chr4:82668911-82668930 MsG0480023251.01.T01:CDS 40.0%
AGAATCGGATCTAAGAATGG+CGG - Chr4:82668773-82668792 None:intergenic 40.0%
AGTTGCTTCACTATTTCCTC+CGG + Chr4:82668831-82668850 MsG0480023251.01.T01:CDS 40.0%
ATATCTGATACACTAAGGGC+GGG + Chr4:82668454-82668473 MsG0480023251.01.T01:intron 40.0%
ATGGAAGGACTAGATGAAGA+AGG + Chr4:82668023-82668042 MsG0480023251.01.T01:CDS 40.0%
GAACAATACCATTGAAGCGT+TGG - Chr4:82669125-82669144 None:intergenic 40.0%
GAAGAAACGAAGACTAAGTG+TGG + Chr4:82668067-82668086 MsG0480023251.01.T01:CDS 40.0%
GCGTTATTGGATCGTTCTAT+CGG + Chr4:82669723-82669742 MsG0480023251.01.T01:three_prime_UTR 40.0%
GCTATGTACCTCTTTGAGTA+AGG - Chr4:82668324-82668343 None:intergenic 40.0%
GCTTCAATGGTATTGTTCAG+AGG + Chr4:82669127-82669146 MsG0480023251.01.T01:three_prime_UTR 40.0%
GTAAGGTTTCATTGTCACGT+TGG - Chr4:82668307-82668326 None:intergenic 40.0%
GTATTGTGGATCCAAATGTG+CGG + Chr4:82669605-82669624 MsG0480023251.01.T01:three_prime_UTR 40.0%
GTGTATCAGATATTCAAGGG+GGG - Chr4:82668447-82668466 None:intergenic 40.0%
TCGAATCTCTTTGCATATGC+TGG + Chr4:82668478-82668497 MsG0480023251.01.T01:intron 40.0%
TGGATCGTTCTATCGGATTT+AGG + Chr4:82669730-82669749 MsG0480023251.01.T01:three_prime_UTR 40.0%
TGTGGATCAAGTTAAGGCTT+TGG + Chr4:82668085-82668104 MsG0480023251.01.T01:CDS 40.0%
TTCATCTAGTCCTTCCATCA+CGG - Chr4:82668021-82668040 None:intergenic 40.0%
TTTCCTCCGGATTTCAAAGA+CGG + Chr4:82668844-82668863 MsG0480023251.01.T01:CDS 40.0%
! AAGGATGTGTTGATGAACCA+GGG + Chr4:82668042-82668061 MsG0480023251.01.T01:CDS 40.0%
! ACCTTGCATAGTAGTTCTGT+CGG + Chr4:82669513-82669532 MsG0480023251.01.T01:three_prime_UTR 40.0%
! CACAACTTTTTGATGTCTCC+TGG + Chr4:82668945-82668964 MsG0480023251.01.T01:exon 40.0%
! TGATGATGATTAAGACCGTG+CGG + Chr4:82669366-82669385 MsG0480023251.01.T01:three_prime_UTR 40.0%
!! GAAGAACCGTCTTTGAAATC+CGG - Chr4:82668853-82668872 None:intergenic 40.0%
AAAGAAAGTGAGGGGGAGAA+GGG + Chr4:82669300-82669319 MsG0480023251.01.T01:three_prime_UTR 45.0%
AACAACCACCAACGCTTCAA+TGG + Chr4:82669114-82669133 MsG0480023251.01.T01:three_prime_UTR 45.0%
AACCAAACAGCAACCTGTCT+TGG - Chr4:82668185-82668204 None:intergenic 45.0%
ATGATGATTAAGACCGTGCG+GGG + Chr4:82669368-82669387 MsG0480023251.01.T01:three_prime_UTR 45.0%
CCTAGGTTCAAATCCACTCT+TGG - Chr4:82669662-82669681 None:intergenic 45.0%
GATGATGATTAAGACCGTGC+GGG + Chr4:82669367-82669386 MsG0480023251.01.T01:three_prime_UTR 45.0%
GCAAGCTTCACTTTCCTATC+TGG - Chr4:82668143-82668162 None:intergenic 45.0%
TAAAGAAAGTGAGGGGGAGA+AGG + Chr4:82669299-82669318 MsG0480023251.01.T01:three_prime_UTR 45.0%
TCAGACGCAGTTTGTGAAGA+TGG + Chr4:82669040-82669059 MsG0480023251.01.T01:three_prime_UTR 45.0%
TCCGACAGAACTACTATGCA+AGG - Chr4:82669517-82669536 None:intergenic 45.0%
TTCAAAACCGTCGTGCTAGA+TGG + Chr4:82668204-82668223 MsG0480023251.01.T01:CDS 45.0%
! AACCAAGACAGGTTGCTGTT+TGG + Chr4:82668180-82668199 MsG0480023251.01.T01:CDS 45.0%
! CCAAGAGTGGATTTGAACCT+AGG + Chr4:82669659-82669678 MsG0480023251.01.T01:three_prime_UTR 45.0%
! GAAGGATGTGTTGATGAACC+AGG + Chr4:82668041-82668060 MsG0480023251.01.T01:CDS 45.0%
! GAATTTCAGTCCGTGATGGA+AGG + Chr4:82668008-82668027 MsG0480023251.01.T01:exon 45.0%
!! CAATACCATTGAAGCGTTGG+TGG - Chr4:82669122-82669141 None:intergenic 45.0%
AGGTGATGATCGCATGGTGT+AGG + Chr4:82669327-82669346 MsG0480023251.01.T01:three_prime_UTR 50.0%
AGTCTTCGTTTCTTCTGCCC+TGG - Chr4:82668062-82668081 None:intergenic 50.0%
ATGATCGCATGGTGTAGGGT+CGG + Chr4:82669332-82669351 MsG0480023251.01.T01:three_prime_UTR 50.0%
ATTGTTAACCAGTGCCCCGA+GGG + Chr4:82669788-82669807 MsG0480023251.01.T01:three_prime_UTR 50.0%
GGGAGAGTTTACCGCACATT+TGG - Chr4:82669619-82669638 None:intergenic 50.0%
GGTGATGATCGCATGGTGTA+GGG + Chr4:82669328-82669347 MsG0480023251.01.T01:three_prime_UTR 50.0%
GGTTGAAGGTGATGATCGCA+TGG + Chr4:82669321-82669340 MsG0480023251.01.T01:three_prime_UTR 50.0%
GTAATTGCACGTGCGTACGT+GGG - Chr4:82669568-82669587 None:intergenic 50.0%
GTACGCACGTGCAATTACGA+AGG + Chr4:82669570-82669589 MsG0480023251.01.T01:three_prime_UTR 50.0%
TATTGTTAACCAGTGCCCCG+AGG + Chr4:82669787-82669806 MsG0480023251.01.T01:three_prime_UTR 50.0%
TGATGATTAAGACCGTGCGG+GGG + Chr4:82669369-82669388 MsG0480023251.01.T01:three_prime_UTR 50.0%
TGGTCTTCCATCTAGCACGA+CGG - Chr4:82668214-82668233 None:intergenic 50.0%
! GTGAAGCTTGCTCAAGAGCT+TGG + Chr4:82668152-82668171 MsG0480023251.01.T01:CDS 50.0%
!! GAACCGTCTTTGAAATCCGG+AGG - Chr4:82668850-82668869 None:intergenic 50.0%
!! GCTTGGTTTGCAACCAAGAC+AGG + Chr4:82668169-82668188 MsG0480023251.01.T01:CDS 50.0%
AAATTAACCCTCCCCCCGCA+CGG - Chr4:82669384-82669403 None:intergenic 55.0%
CGTAATTGCACGTGCGTACG+TGG - Chr4:82669569-82669588 None:intergenic 55.0%
CTTCCTTAACCAGTGCCCCT+CGG - Chr4:82669807-82669826 None:intergenic 55.0%
GATGATTAAGACCGTGCGGG+GGG + Chr4:82669370-82669389 MsG0480023251.01.T01:three_prime_UTR 55.0%
GGTGTAGGGTCGGAGATGAA+AGG + Chr4:82669342-82669361 MsG0480023251.01.T01:three_prime_UTR 55.0%
TTCCTTAACCAGTGCCCCTC+GGG - Chr4:82669806-82669825 None:intergenic 55.0%
TTGTTAACCAGTGCCCCGAG+GGG + Chr4:82669789-82669808 MsG0480023251.01.T01:three_prime_UTR 55.0%
!! GTGCGTACGTGGGTGTTACT+CGG - Chr4:82669558-82669577 None:intergenic 55.0%
ATTAAGACCGTGCGGGGGGA+GGG + Chr4:82669374-82669393 MsG0480023251.01.T01:three_prime_UTR 60.0%
GTGAGGGGGAGAAGGGTTGA+AGG + Chr4:82669307-82669326 MsG0480023251.01.T01:three_prime_UTR 60.0%
TCCTTAACCAGTGCCCCTCG+GGG - Chr4:82669805-82669824 None:intergenic 60.0%
GATTAAGACCGTGCGGGGGG+AGG + Chr4:82669373-82669392 MsG0480023251.01.T01:three_prime_UTR 65.0%
!! GCCCCGAGGGGCACTGGTTA+AGG + Chr4:82669801-82669820 MsG0480023251.01.T01:three_prime_UTR 70.0%
ACCAGTGCCCCTCGGGGCAC+TGG - Chr4:82669799-82669818 None:intergenic 75.0%
! ACCAGTGCCCCGAGGGGCAC+TGG + Chr4:82669795-82669814 MsG0480023251.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 82668008 82669871 82668008 ID=MsG0480023251.01;Name=MsG0480023251.01
Chr4 mRNA 82668008 82669871 82668008 ID=MsG0480023251.01.T01;Parent=MsG0480023251.01;Name=MsG0480023251.01.T01;_AED=0.27;_eAED=0.27;_QI=15|1|1|1|1|1|2|914|206
Chr4 exon 82668008 82668334 82668008 ID=MsG0480023251.01.T01:exon:942;Parent=MsG0480023251.01.T01
Chr4 exon 82668649 82669871 82668649 ID=MsG0480023251.01.T01:exon:943;Parent=MsG0480023251.01.T01
Chr4 five_prime_UTR 82668008 82668022 82668008 ID=MsG0480023251.01.T01:five_prime_utr;Parent=MsG0480023251.01.T01
Chr4 CDS 82668023 82668334 82668023 ID=MsG0480023251.01.T01:cds;Parent=MsG0480023251.01.T01
Chr4 CDS 82668649 82668957 82668649 ID=MsG0480023251.01.T01:cds;Parent=MsG0480023251.01.T01
Chr4 three_prime_UTR 82668958 82669871 82668958 ID=MsG0480023251.01.T01:three_prime_utr;Parent=MsG0480023251.01.T01
Gene Sequence

>MsG0480023251.01.T01

ATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCTCAAGAGCTTGGTTTGCAACCAAGACAGGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAGACCAAACAATTGGAAAGAGATTATGGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAATTGTGAGAATCTCCAACGTGACAATGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACGGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGATTGTTTCAAAAACGGTGATGGAGTTGCTTCACTATTTCCTCCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGACGAAAGCAACGCAGCAATTTCTTCATCTGGGTTCTTCAAAATCACAACTTTTTGA

Protein sequence

>MsG0480023251.01.T01

MEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCENLQRDNETLLKEVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNYDCFKNGDGVASLFPPDFKDGSSDSDSSAILNDESNAAISSSGFFKITTF*